Citrus Sinensis ID: 002875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870--
Protein Sequence
MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPHGK
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEccccccccccccccccccccccEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccccccccccEEccccccccccccccEEccccccEEcccHHHHccccccEEcccccEEEEcccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccEEEEcccccccccccccEEEccccEEEEcccccccccccccEEEccccEEEccccHHccccccccEEEcccccccccccccccccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHcccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccEEccccccEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHcccccccccEEEEEEcccccEEEEcccccccHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEcccccccccccccccEEEccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHccccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEccccccccccHHHccccccEEEEEEEccEEccccHHHHHcccccEEEEEEEcEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHcccccccEEEcccccccccccccccccccEEEEcccccccccccHHHcccccEEEEEcccccccccccEcccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccccEEEccccEEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHcccHHHHHHHEEccccccEEEEEEccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEccccHHHHHHHcHHEEEccccccEEEcccccccccHEEEEEEcccccHEHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mkglsgalpgkplrIFFNELVDLnlshnsfsgqfpveIFNLTSLISldisrnnfsghfpgGIQSLRNLLVLdafsnsfsgsvpaeISQLEHLKVLNLAgsyfsgpipsqfgsfksLEFLHLAGNLlndqipaelgMLKTVTHMEIGynfyqgnipwqlgnmseVQYLDIAganlsgsipkelsnltKLESLFLFRNQlagqvpwefsrvttlksldlsdnrlsgpipesfaDLKNLRLLSLMYNemsgtvpeslvqlpsleILFIWnnyfsgslpenlgrnsklRWVDVstnnfngsippdicsggVLFKLILFsnnftgslspslsncsSLVRLrlednsfsgeiplkfsqlpdinyidlsrngftggiptdinqaskleyfnvsnnpklggmipaqtwslpslqnfsasacnitgnlppfkscksISVIESHMnnlsgtipesvsncveLERIDLAnnkligsipevlarlpvlgvldlshnslsgqipakfgscsslTVLNVsfndisgsipsgkvLRLMGssayagnpklcgaplqpchaSVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFfrrggkghwKMISflglpqftandvlrsfnsteceeaarpqsaagckavlptgitvsVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLydylpngnlsekiRTKRDWAAKYKIVLGVARGlcflhhdcypaiphgdlkasnivfdenmephlaEFGFKYLtqladgsfpakiawTESGEFYNAMKEEMYMDVYGFGEIILEILtngrltnagsslqnkpidgllgemynenevgsssslqDEIKLVLDVALLctrstpsdrpSMEEALKLLSGLKPHGK
Flexible Loop (DISEMBL)
mkglsgalpgkpLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKsldlsdnrlsgpipesFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNnfngsippdiCSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQFTANDVLRSFNSTECEEaarpqsaagckavlptgitvsvkkiewgatrIKIVSEfitrigtvrHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTrstpsdrpsmeEALKllsglkphgk
Low Complexity Region (SEG)
MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGslspslsncsslVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTGKLKFVLLLCAGIVMfiaaallgifffRRGGKGHWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPHGK
Disordered region (IsUnstruct)
***********PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQFTANDVLRSFNSTEC********AAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA**********GLL*****************EIKLVLDVALLCT*************************
Disordered Region (DISOPRED)
MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGA*********************VLLLCAGIVMFIAAALLGIFF******************QFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD**FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN*****SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL*GL*****
Disordered Region (DISEMBL)
MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQFTANDVLRSFNS*************GCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN********QDEIKLVLDVALLCTRSTPSDRPSMEEALKLL********
Disordered Region (DISPRO)
*KGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPHGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	872	2.2.26 [Sep-21-2011]
Q9FII5	1041	Leucine-rich repeat recep	no	no	0.963	0.806	0.401	1e-180
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.973	0.825	0.344	1e-150
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.963	0.829	0.364	1e-150
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.961	0.836	0.358	1e-142
O49545	1003	Leucine-rich repeat recep	no	no	0.961	0.835	0.357	1e-142
Q9SYQ8	980	Receptor protein kinase C	no	no	0.940	0.836	0.349	1e-140
O65440	992	Leucine-rich repeat recep	no	no	0.951	0.836	0.345	1e-135
C0LGX3	993	LRR receptor-like serine/	no	no	0.951	0.835	0.325	1e-122
Q9SGP2	996	Receptor-like protein kin	no	no	0.948	0.830	0.315	1e-121
Q9LHP4	1141	Receptor-like protein kin	no	no	0.957	0.731	0.322	1e-120

>sp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1

 Score =  632 bits (1629), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 360/896 (40%), Positives = 515/896 (57%), Gaps = 56/896 (6%)

Query: 28   NSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEIS 87
            NS  G FP  IF+LT L +LDISRN+F   FP GI  L+ L V +AFSN+F G +P+++S
Sbjct: 115  NSLEGSFPTSIFDLTKLTTLDISRNSFDSSFPPGISKLKFLKVFNAFSNNFEGLLPSDVS 174

Query: 88   QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGY 147
            +L  L+ LN  GSYF G IP+ +G  + L+F+HLAGN+L  ++P  LG+L  + HMEIGY
Sbjct: 175  RLRFLEELNFGGSYFEGEIPAAYGGLQRLKFIHLAGNVLGGKLPPRLGLLTELQHMEIGY 234

Query: 148  NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFS 207
            N + GNIP +   +S ++Y D++  +LSGS+P+EL NL+ LE+LFLF+N   G++P  +S
Sbjct: 235  NHFNGNIPSEFALLSNLKYFDVSNCSLSGSLPQELGNLSNLETLFLFQNGFTGEIPESYS 294

Query: 208  RVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWN 267
             + +LK LD S N+LSG IP  F+ LKNL  LSL+ N +SG VPE + +LP L  LF+WN
Sbjct: 295  NLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSLISNNLSGEVPEGIGELPELTTLFLWN 354

Query: 268  NYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLS 327
            N F+G LP  LG N KL  +DVS N+F G+IP  +C G  L+KLILFSN F G L  SL+
Sbjct: 355  NNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSSLCHGNKLYKLILFSNMFEGELPKSLT 414

Query: 328  NCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSN 387
             C SL R R ++N  +G IP+ F  L ++ ++DLS N FT  IP D   A  L+Y N+S 
Sbjct: 415  RCESLWRFRSQNNRLNGTIPIGFGSLRNLTFVDLSNNRFTDQIPADFATAPVLQYLNLST 474

Query: 388  NPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVS 447
            N      +P   W  P+LQ FSAS  N+ G +P +  CKS   IE   N+L+GTIP  + 
Sbjct: 475  N-FFHRKLPENIWKAPNLQIFSASFSNLIGEIPNYVGCKSFYRIELQGNSLNGTIPWDIG 533

Query: 448  NCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSF 507
            +C +L  ++L+ N L G IP  ++ LP +  +DLSHN L+G IP+ FGS  ++T  NVS+
Sbjct: 534  HCEKLLCLNLSQNHLNGIIPWEISTLPSIADVDLSHNLLTGTIPSDFGSSKTITTFNVSY 593

Query: 508  NDISGSIPSGKVLRLMGSSAYAGNPKLCGAPL-QPCHASVAILG--------------KG 552
            N + G IPSG    L   S ++ N  LCG  + +PC++     G              K 
Sbjct: 594  NQLIGPIPSGSFAHL-NPSFFSSNEGLCGDLVGKPCNSDRFNAGNADIDGHHKEERPKKT 652

Query: 553  TGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGH-----------WKMISFLGLPQFTA 601
             G + ++L    G+  F+  A    F    G +             WK+ +F  L  FTA
Sbjct: 653  AGAIVWILAAAIGVGFFVLVAATRCFQKSYGNRVDGGGRNGGDIGPWKLTAFQRL-NFTA 711

Query: 602  NDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT--------RIKIVSEF 653
            +DV+   + T+        +    KA +P G  ++VKK+ WG          R   V   
Sbjct: 712  DDVVECLSKTD-NILGMGSTGTVYKAEMPNGEIIAVKKL-WGKNKENGKIRRRKSGVLAE 769

Query: 654  ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE-------KIRTKRDWAAKYKI 706
            +  +G VRH+N++RLLG C NR    LLY+Y+PNG+L +        +    +W A Y+I
Sbjct: 770  VDVLGNVRHRNIVRLLGCCTNRDCTMLLYEYMPNGSLDDLLHGGDKTMTAAAEWTALYQI 829

Query: 707  VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPAKI 765
             +GVA+G+C+LHHDC P I H DLK SNI+ D + E  +A+FG   L Q  +  S  A  
Sbjct: 830  AIGVAQGICYLHHDCDPVIVHRDLKPSNILLDADFEARVADFGVAKLIQTDESMSVVAGS 889

Query: 766  AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENE 825
                + E+   ++ +   D+Y +G I+LEI+T  R         N  +D +  ++  + +
Sbjct: 890  YGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSVEPEFGEGNSIVDWVRSKLKTKED 949

Query: 826  V--------GSSSSL-QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPHGK 872
            V        G S SL ++E+K +L +ALLCT  +P+DRP M + L +L   KP  K
Sbjct: 950  VEEVLDKSMGRSCSLIREEMKQMLRIALLCTSRSPTDRPPMRDVLLILQEAKPKRK 1005

Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  534 bits (1376), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 316/916 (34%), Positives = 519/916 (56%), Gaps = 67/916 (7%)

Query: 17   FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
            F  L  L+LS+N+F    P  + NLTSL  +D+S N+F G FP G+     L  ++A SN
Sbjct: 100  FPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFGTFPYGLGMATGLTHVNASSN 159

Query: 77   SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
            +FSG +P ++     L+VL+  G YF G +PS F + K+L+FL L+GN    ++P  +G 
Sbjct: 160  NFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGE 219

Query: 137  LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
            L ++  + +GYN + G IP + G ++ +QYLD+A  NL+G IP  L  L +L +++L++N
Sbjct: 220  LSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQN 279

Query: 197  QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
            +L G++P E   +T+L  LDLSDN+++G IP    +LKNL+LL+LM N+++G +P  + +
Sbjct: 280  RLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAE 339

Query: 257  LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSN 316
            LP+LE+L +W N   GSLP +LG+NS L+W+DVS+N  +G IP  +C    L KLILF+N
Sbjct: 340  LPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLILFNN 399

Query: 317  NFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQ 376
            +F+G +   + +C +LVR+R++ N  SG IP     LP + +++L++N  TG IP DI  
Sbjct: 400  SFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLPMLQHLELAKNNLTGKIPDDIAL 459

Query: 377  ASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP-PFKSCKSISVIESHM 435
            ++ L + ++S        + +  +S P+LQ F AS  N  G +P   +   S+SV++   
Sbjct: 460  STSLSFIDISF--NHLSSLSSSIFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSF 517

Query: 436  NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
            N+ SG IPE +++  +L  ++L +N+L+G IP+ LA + +L VLDLS+NSL+G IPA  G
Sbjct: 518  NHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLG 577

Query: 496  SCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGT-- 553
            +  +L +LNVSFN + G IPS  +   +      GN  LCG  L PC  S+A+  KG   
Sbjct: 578  ASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCGGVLPPCSKSLALSAKGRNP 637

Query: 554  GKLK-------FVL---LLCAGIVMFIAA-------------ALLGIFFFRRGGKGHWKM 590
            G++        F++   ++ A  +MF+A              A   IF  +   +  W++
Sbjct: 638  GRIHVNHAVFGFIVGTSVIVAMGMMFLAGRWIYTRWDLYSNFAREYIFCKKPREEWPWRL 697

Query: 591  ISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA------ 644
            ++F  L  FTA D+L     +              + +    +TV+VKK+ W +      
Sbjct: 698  VAFQRL-CFTAGDILSHIKESNIIGMGAIGIVYKAEVMRRPLLTVAVKKL-WRSPSPQND 755

Query: 645  ---------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR 695
                         I+ E +  +G +RH+N++++LG+ +N  +  ++Y+Y+PNGNL   + 
Sbjct: 756  IEDHHQEEDEEDDILRE-VNLLGGLRHRNIVKILGYVHNEREVMMVYEYMPNGNLGTALH 814

Query: 696  TK------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 749
            +K      RDW ++Y + +GV +GL +LH+DCYP I H D+K++NI+ D N+E  +A+FG
Sbjct: 815  SKDEKFLLRDWLSRYNVAVGVVQGLNYLHNDCYPPIIHRDIKSNNILLDSNLEARIADFG 874

Query: 750  FKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGS 806
               +  L      + +A +    + E+   +K +   D+Y  G ++LE++T G++    S
Sbjct: 875  LAKM-MLHKNETVSMVAGSYGYIAPEYGYTLKIDEKSDIYSLGVVLLELVT-GKMPIDPS 932

Query: 807  SLQNKPIDGLLGEMYNENE----------VGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
               +  +   +     +NE           G    + +E+ L L +ALLCT   P DRPS
Sbjct: 933  FEDSIDVVEWIRRKVKKNESLEEVIDASIAGDCKHVIEEMLLALRIALLCTAKLPKDRPS 992

Query: 857  MEEALKLLSGLKPHGK 872
            + + + +L+  KP  K
Sbjct: 993  IRDVITMLAEAKPRRK 1008

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  533 bits (1372), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 331/907 (36%), Positives = 511/907 (56%), Gaps = 67/907 (7%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGH-FPGGIQSLRNLLVLDAFS 75
            + LV  N+S N F    P  I     L S+DIS+N+FSG  F    +SL  L+ L+A  
Sbjct: 94  LSSLVSFNISCNGFESLLPKSI---PPLKSIDISQNSFSGSLFLFSNESL-GLVHLNASG 149

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           N+ SG++  ++  L  L+VL+L G++F G +PS F + + L FL L+GN L  ++P+ LG
Sbjct: 150 NNLSGNLTEDLGNLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSVLG 209

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
            L ++    +GYN ++G IP + GN++ ++YLD+A   LSG IP EL  L  LE+L L+ 
Sbjct: 210 QLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYE 269

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           N   G +P E   +TTLK LD SDN L+G IP     LKNL+LL+LM N++SG++P ++ 
Sbjct: 270 NNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPAIS 329

Query: 256 QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFS 315
            L  L++L +WNN  SG LP +LG+NS L+W+DVS+N+F+G IP  +C+ G L KLILF+
Sbjct: 330 SLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFN 389

Query: 316 NNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDIN 375
           N FTG +  +LS C SLVR+R+++N  +G IP+ F +L  +  ++L+ N  +GGIP DI+
Sbjct: 390 NTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDIS 449

Query: 376 QASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP-PFKSCKSISVIESH 434
            +  L + + S N ++   +P+   S+ +LQ F  +   I+G +P  F+ C S+S ++  
Sbjct: 450 DSVSLSFIDFSRN-QIRSSLPSTILSIHNLQAFLVADNFISGEVPDQFQDCPSLSNLDLS 508

Query: 435 MNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKF 494
            N L+GTIP S+++C +L  ++L NN L G IP  +  +  L VLDLS+NSL+G +P   
Sbjct: 509 SNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSNNSLTGVLPESI 568

Query: 495 GSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPC------------ 542
           G+  +L +LNVS+N ++G +P    L+ +      GN  LCG  L PC            
Sbjct: 569 GTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLPPCSKFQRATSSHSS 628

Query: 543 -HASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFF------RRGGKGH--WKMISF 593
            H    + G   G      +L  GI+  +   L   ++           KG   W++++F
Sbjct: 629 LHGKRIVAGWLIG---IASVLALGILTIVTRTLYKKWYSNGFCGDETASKGEWPWRLMAF 685

Query: 594 LGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITV-SVKKIEWGATRIK--IV 650
             L  FTA+D+L      E        +    KA +    TV +VKK+   A  I+    
Sbjct: 686 HRL-GFTASDILACIK--ESNMIGMGATGIVYKAEMSRSSTVLAVKKLWRSAADIEDGTT 742

Query: 651 SEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR-------DW 700
            +F+  +   G +RH+N++RLLGF YN     ++Y+++ NGNL + I  K        DW
Sbjct: 743 GDFVGEVNLLGKLRHRNIVRLLGFLYNDKNMMIVYEFMLNGNLGDAIHGKNAAGRLLVDW 802

Query: 701 AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYL 753
            ++Y I LGVA GL +LHHDC+P + H D+K++NI+ D N++  +A+FG        K  
Sbjct: 803 VSRYNIALGVAHGLAYLHHDCHPPVIHRDIKSNNILLDANLDARIADFGLARMMARKKET 862

Query: 754 TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN--------GRLTNAG 805
             +  GS+   IA     E+   +K +  +D+Y +G ++LE+LT         G   +  
Sbjct: 863 VSMVAGSY-GYIA----PEYGYTLKVDEKIDIYSYGVVLLELLTGRRPLEPEFGESVDIV 917

Query: 806 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
             ++ K  D +  E   +  VG+   +Q+E+ LVL +ALLCT   P DRPSM + + +L 
Sbjct: 918 EWVRRKIRDNISLEEALDPNVGNCRYVQEEMLLVLQIALLCTTKLPKDRPSMRDVISMLG 977

Query: 866 GLKPHGK 872
             KP  K
Sbjct: 978 EAKPRRK 984

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  508 bits (1307), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 314/876 (35%), Positives = 484/876 (55%), Gaps = 38/876 (4%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQS-LRNLLVLDAFSNSF 78
           L +L+L+ N  SG  P +I NL  L  L++S N F+G FP  + S L NL VLD ++N+ 
Sbjct: 95  LQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNL 154

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
           +G +P  ++ L  L+ L+L G+YFSG IP+ +G++  LE+L ++GN L  +IP E+G L 
Sbjct: 155 TGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLT 214

Query: 139 TVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
           T+  + IGY N ++  +P ++GN+SE+   D A   L+G IP E+  L KL++LFL  N 
Sbjct: 215 TLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNA 274

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
             G +  E   +++LKS+DLS+N  +G IP SF+ LKNL LL+L  N++ G +PE + ++
Sbjct: 275 FTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEM 334

Query: 258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNN 317
           P LE+L +W N F+GS+P+ LG N +L  +D+S+N   G++PP++CSG  L  LI   N 
Sbjct: 335 PELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNF 394

Query: 318 FTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQA 377
             GS+  SL  C SL R+R+ +N  +G IP +   LP ++ ++L  N  TG +P      
Sbjct: 395 LFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGV 454

Query: 378 S-KLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHM 435
           S  L   ++SNN +L G +PA   +L  +Q         +G++PP     + +S ++   
Sbjct: 455 SGDLGQISLSNN-QLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSH 513

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
           N  SG I   +S C  L  +DL+ N+L G IP  L  + +L  L+LS N L G IP    
Sbjct: 514 NLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIA 573

Query: 496 SCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPC----HASVAILGK 551
           S  SLT ++ S+N++SG +PS         +++ GN  LCG  L PC    H S      
Sbjct: 574 SMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCGPYLGPCGKGTHQSHVKPLS 633

Query: 552 GTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGH-WKMISFLGLPQFTANDVLRSFNS 610
            T KL  VL L    ++F   A++     R   +   W++ +F  L  FT +DVL S   
Sbjct: 634 ATTKLLLVLGLLFCSMVFAIVAIIKARSLRNASEAKAWRLTAFQRL-DFTCDDVLDSLK- 691

Query: 611 TECEEAARPQSAAGC--KAVLPTGITVSVKKI---EWGATRIKIVSEFITRIGTVRHKNL 665
              E+    +  AG   K  +P G  V+VK++     G++     +  I  +G +RH+++
Sbjct: 692 ---EDNIIGKGGAGIVYKGTMPKGDLVAVKRLATMSHGSSHDHGFNAEIQTLGRIRHRHI 748

Query: 666 IRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDC 721
           +RLLGFC N     L+Y+Y+PNG+L E +  K+     W  +YKI L  A+GLC+LHHDC
Sbjct: 749 VRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWNTRYKIALEAAKGLCYLHHDC 808

Query: 722 YPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---SGEFYNAM 777
            P I H D+K++NI+ D N E H+A+FG  K+L         + IA +    + E+   +
Sbjct: 809 SPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTL 868

Query: 778 KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN--------EVGSS 829
           K +   DVY FG ++LE++T  +    G       I   +  M + N        ++  S
Sbjct: 869 KVDEKSDVYSFGVVLLELITGKK--PVGEFGDGVDIVQWVRSMTDSNKDCVLKVIDLRLS 926

Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
           S    E+  V  VALLC      +RP+M E +++L+
Sbjct: 927 SVPVHEVTHVFYVALLCVEEQAVERPTMREVVQILT 962

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 315/880 (35%), Positives = 481/880 (54%), Gaps = 42/880 (4%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQS-LRNLLVLDAFSNSF 78
           L +L+L+ N  SG  P EI +L+ L  L++S N F+G FP  I S L NL VLD ++N+ 
Sbjct: 95  LQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNL 154

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
           +G +P  ++ L  L+ L+L G+YF+G IP  +GS+  +E+L ++GN L  +IP E+G L 
Sbjct: 155 TGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLT 214

Query: 139 TVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
           T+  + IGY N ++  +P ++GN+SE+   D A   L+G IP E+  L KL++LFL  N 
Sbjct: 215 TLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLDTLFLQVNV 274

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
            +G + WE   +++LKS+DLS+N  +G IP SFA+LKNL LL+L  N++ G +PE +  L
Sbjct: 275 FSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHGEIPEFIGDL 334

Query: 258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNN 317
           P LE+L +W N F+GS+P+ LG N KL  VD+S+N   G++PP++CSG  L  LI   N 
Sbjct: 335 PELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPNMCSGNKLETLITLGNF 394

Query: 318 FTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQA 377
             GS+  SL  C SL R+R+ +N  +G IP     LP +  ++L  N  +G +P     +
Sbjct: 395 LFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVS 454

Query: 378 SKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP-PFKSCKSISVIESHMN 436
             L   ++SNN +L G +P    +   +Q          G +P      + +S I+   N
Sbjct: 455 VNLGQISLSNN-QLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHN 513

Query: 437 NLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGS 496
             SG I   +S C  L  +DL+ N+L G IP  +  + +L  L+LS N L G IP    S
Sbjct: 514 LFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISS 573

Query: 497 CSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGK----- 551
             SLT L+ S+N++SG +P          +++ GNP LCG  L PC   VA  G      
Sbjct: 574 MQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVAKGGHQSHSK 633

Query: 552 ----GTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGH-WKMISFLGLPQFTANDVLR 606
                + KL  VL L    + F   A++     ++  +   W++ +F  L  FT +DVL 
Sbjct: 634 GPLSASMKLLLVLGLLVCSIAFAVVAIIKARSLKKASESRAWRLTAFQRL-DFTCDDVLD 692

Query: 607 SFNSTECEEAARPQSAAGC--KAVLPTGITVSVKKI---EWGATRIKIVSEFITRIGTVR 661
           S      E+    +  AG   K V+P G  V+VK++     G++     +  I  +G +R
Sbjct: 693 SLK----EDNIIGKGGAGIVYKGVMPNGDLVAVKRLAAMSRGSSHDHGFNAEIQTLGRIR 748

Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFL 717
           H++++RLLGFC N     L+Y+Y+PNG+L E +  K+     W  +YKI L  A+GLC+L
Sbjct: 749 HRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIALEAAKGLCYL 808

Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---SGEF 773
           HHDC P I H D+K++NI+ D N E H+A+FG  K+L         + IA +    + E+
Sbjct: 809 HHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEY 868

Query: 774 YNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ 833
              +K +   DVY FG ++LE++T GR    G       I   + +M + N+      L 
Sbjct: 869 AYTLKVDEKSDVYSFGVVLLELVT-GR-KPVGEFGDGVDIVQWVRKMTDSNKDSVLKVLD 926

Query: 834 --------DEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
                    E+  V  VA+LC      +RP+M E +++L+
Sbjct: 927 PRLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQILT 966

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score =  500 bits (1287), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 317/907 (34%), Positives = 497/907 (54%), Gaps = 87/907 (9%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRN-NFSGHFPGGI-QSLRNLLVLDA 73
               LV+L L+ N+F+G+ P+E+ +LTSL  L+IS N N +G FPG I +++ +L VLD 
Sbjct: 92  MLTHLVNLTLAANNFTGELPLEMKSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDT 151

Query: 74  FSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
           ++N+F+G +P E+S+L+ LK L+  G++FSG IP  +G  +SLE+L L G  L+ + PA 
Sbjct: 152 YNNNFNGKLPPEMSELKKLKYLSFGGNFFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAF 211

Query: 134 LGMLKTVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLF 192
           L  LK +  M IGY N Y G +P + G +++++ LD+A   L+G IP  LSNL  L +LF
Sbjct: 212 LSRLKNLREMYIGYYNSYTGGVPPEFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLF 271

Query: 193 LFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE 252
           L  N L G +P E S + +LKSLDLS N+L+G IP+SF +L N+ L++L  N + G +PE
Sbjct: 272 LHINNLTGHIPPELSGLVSLKSLDLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPE 331

Query: 253 SLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLI 312
           ++ +LP LE+  +W N F+  LP NLGRN  L  +DVS N+  G IP D+C G  L  LI
Sbjct: 332 AIGELPKLEVFEVWENNFTLQLPANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLI 391

Query: 313 LFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPT 372
           L +N F G +   L  C SL ++R+  N  +G +P     LP +  I+L+ N F+G +P 
Sbjct: 392 LSNNFFFGPIPEELGKCKSLTKIRIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPV 451

Query: 373 DINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP-PFKSCKSISVI 431
            ++    L+   +SNN    G IP    + P+LQ          GN+P      K +S I
Sbjct: 452 TMS-GDVLDQIYLSNN-WFSGEIPPAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRI 509

Query: 432 ESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIP 491
            +  NN++G IP+S+S C  L  +DL+ N++ G IP+ +  +  LG L++S N L+G IP
Sbjct: 510 NTSANNITGGIPDSISRCSTLISVDLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIP 569

Query: 492 AKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLC-----GAPLQPCHASV 546
              G+ +SLT L++SFND+SG +P G    +   +++AGN  LC       P +P     
Sbjct: 570 TGIGNMTSLTTLDLSFNDLSGRVPLGGQFLVFNETSFAGNTYLCLPHRVSCPTRP----- 624

Query: 547 AILGKGTGKLKFVLLLCAGIVMFIAAALLGIFF----FRRGGKGH------WKMISFLGL 596
              G+ +      L   + IV+ + AA+ G+       R+  K        WK+ +F  L
Sbjct: 625 ---GQTSDHNHTALFSPSRIVITVIAAITGLILISVAIRQMNKKKNQKSLAWKLTAFQKL 681

Query: 597 PQFTANDVLRSFNSTEC--EEAARPQSAAGC--KAVLPTGITVSVKKI---EWGATRIKI 649
             F + DVL      EC  EE    +  AG   +  +P  + V++K++     G +    
Sbjct: 682 -DFKSEDVL------ECLKEENIIGKGGAGIVYRGSMPNNVDVAIKRLVGRGTGRSDHGF 734

Query: 650 VSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKYK 705
            +E I  +G +RH++++RLLG+  N+    LLY+Y+PNG+L E +   +     W  +++
Sbjct: 735 TAE-IQTLGRIRHRHIVRLLGYVANKDTNLLLYEYMPNGSLGELLHGSKGGHLQWETRHR 793

Query: 706 IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAK 764
           + +  A+GLC+LHHDC P I H D+K++NI+ D + E H+A+FG  K+L   A     + 
Sbjct: 794 VAVEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFEAHVADFGLAKFLVDGAASECMSS 853

Query: 765 IAWTE---SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMY 821
           IA +    + E+   +K +   DVY FG ++LE++       AG     KP+ G  GE  
Sbjct: 854 IAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELI-------AGK----KPV-GEFGEGV 901

Query: 822 N--------ENEVGSSSSLQDEIKL---------------VLDVALLCTRSTPSDRPSME 858
           +        E E+   S     + +               V  +A++C     + RP+M 
Sbjct: 902 DIVRWVRNTEEEITQPSDAAIVVAIVDPRLTGYPLTSVIHVFKIAMMCVEEEAAARPTMR 961

Query: 859 EALKLLS 865
           E + +L+
Sbjct: 962 EVVHMLT 968

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 312/904 (34%), Positives = 479/904 (52%), Gaps = 74/904 (8%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPG-GIQSLRNLLVLDAFSNSF 78
           LV L++S NSFSG+ P EI+ L+ L  L+IS N F G     G   +  L+ LDA+ NSF
Sbjct: 103 LVFLDISSNSFSGELPKEIYELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSF 162

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
           +GS+P  ++ L  L+ L+L G+YF G IP  +GSF SL+FL L+GN L  +IP EL  + 
Sbjct: 163 NGSLPLSLTTLTRLEHLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLRGRIPNELANIT 222

Query: 139 TVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
           T+  + +GY N Y+G IP   G +  + +LD+A  +L GSIP EL NL  LE LFL  N+
Sbjct: 223 TLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLKNLEVLFLQTNE 282

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
           L G VP E   +T+LK+LDLS+N L G IP   + L+ L+L +L +N + G +PE + +L
Sbjct: 283 LTGSVPRELGNMTSLKTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRLHGEIPEFVSEL 342

Query: 258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNN 317
           P L+IL +W+N F+G +P  LG N  L  +D+STN   G IP  +C G  L  LILF+N 
Sbjct: 343 PDLQILKLWHNNFTGKIPSKLGSNGNLIEIDLSTNKLTGLIPESLCFGRRLKILILFNNF 402

Query: 318 FTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI--- 374
             G L   L  C  L R RL  N  + ++P     LP+++ ++L  N  TG IP +    
Sbjct: 403 LFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGLIYLPNLSLLELQNNFLTGEIPEEEAGN 462

Query: 375 NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP-PFKSCKSISVIES 433
            Q S L   N+SNN +L G IP    +L SLQ     A  ++G +P    S KS+  I+ 
Sbjct: 463 AQFSSLTQINLSNN-RLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEIGSLKSLLKIDM 521

Query: 434 HMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAK 493
             NN SG  P    +C+ L  +DL++N++ G IP  ++++ +L  L++S NS +  +P +
Sbjct: 522 SRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQISQIRILNYLNVSWNSFNQSLPNE 581

Query: 494 FGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHAS-----VAI 548
            G   SLT  + S N+ SGS+P+        ++++ GNP LCG    PC+ S       +
Sbjct: 582 LGYMKSLTSADFSHNNFSGSVPTSGQFSYFNNTSFLGNPFLCGFSSNPCNGSQNQSQSQL 641

Query: 549 LGKGTGKLKFVLLLCAGIVMFIAAALLGIFF----------FRRGGKGHWKMISFLGLPQ 598
           L +   + +  +     +   +      + F           R+     WK+I F  L  
Sbjct: 642 LNQNNARSRGEISAKFKLFFGLGLLGFFLVFVVLAVVKNRRMRKNNPNLWKLIGFQKLG- 700

Query: 599 FTANDVLRSFNSTECEEAARPQSAAG----CKAVLPTGITVSVKK---IEWGATRIKIVS 651
                  RS +  EC +        G     K V+P G  V+VKK   I  G++    ++
Sbjct: 701 ------FRSEHILECVKENHVIGKGGRGIVYKGVMPNGEEVAVKKLLTITKGSSHDNGLA 754

Query: 652 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKYKIV 707
             I  +G +RH+N++RLL FC N+    L+Y+Y+PNG+L E +  K      W  + +I 
Sbjct: 755 AEIQTLGRIRHRNIVRLLAFCSNKDVNLLVYEYMPNGSLGEVLHGKAGVFLKWETRLQIA 814

Query: 708 LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFP--AKI 765
           L  A+GLC+LHHDC P I H D+K++NI+     E H+A+FG        +G+    + I
Sbjct: 815 LEAAKGLCYLHHDCSPLIIHRDVKSNNILLGPEFEAHVADFGLAKFMMQDNGASECMSSI 874

Query: 766 AWTE---SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE--- 819
           A +    + E+   ++ +   DVY FG ++LE++T GR          KP+D    E   
Sbjct: 875 AGSYGYIAPEYAYTLRIDEKSDVYSFGVVLLELIT-GR----------KPVDNFGEEGID 923

Query: 820 MYNENEVGSSSSLQDEIKLV---------------LDVALLCTRSTPSDRPSMEEALKLL 864
           +   +++ ++ + Q  +K++                 VA+LC +    +RP+M E ++++
Sbjct: 924 IVQWSKIQTNCNRQGVVKIIDQRLSNIPLAEAMELFFVAMLCVQEHSVERPTMREVVQMI 983

Query: 865 SGLK 868
           S  K
Sbjct: 984 SQAK 987

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 304/934 (32%), Positives = 472/934 (50%), Gaps = 104/934 (11%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGG----IQSLRNLLVLDAFS 75
           +  ++LS  + SG FP     + +LI++ +S+NN +G            L+NL++     
Sbjct: 76  VTTIDLSGYNISGGFPYGFCRIRTLINITLSQNNLNGTIDSAPLSLCSKLQNLIL---NQ 132

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           N+FSG +P    +   L+VL L  + F+G IP  +G   +L+ L+L GN L+  +PA LG
Sbjct: 133 NNFSGKLPEFSPEFRKLRVLELESNLFTGEIPQSYGRLTALQVLNLNGNPLSGIVPAFLG 192

Query: 136 MLKTVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLF 194
            L  +T +++ Y +F    IP  LGN+S +  L +  +NL G IP  + NL  LE+L L 
Sbjct: 193 YLTELTRLDLAYISFDPSPIPSTLGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLA 252

Query: 195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 254
            N L G++P    R+ ++  ++L DNRLSG +PES  +L  LR   +  N ++G +PE +
Sbjct: 253 MNSLTGEIPESIGRLESVYQIELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKI 312

Query: 255 VQL-----------------------PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST 291
             L                       P+L    I+NN F+G+LP NLG+ S++   DVST
Sbjct: 313 AALQLISFNLNDNFFTGGLPDVVALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVST 372

Query: 292 NNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFS 351
           N F+G +PP +C    L K+I FSN  +G +  S  +C SL  +R+ DN  SGE+P +F 
Sbjct: 373 NRFSGELPPYLCYRRKLQKIITFSNQLSGEIPESYGDCHSLNYIRMADNKLSGEVPARFW 432

Query: 352 QLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSAS 411
           +LP       + N   G IP  I++A  L    +S N    G+IP +   L  L+    S
Sbjct: 433 ELPLTRLELANNNQLQGSIPPSISKARHLSQLEISAN-NFSGVIPVKLCDLRDLRVIDLS 491

Query: 412 ACNITGNLPP-FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVL 470
             +  G++P      K++  +E   N L G IP SVS+C EL  ++L+NN+L G IP  L
Sbjct: 492 RNSFLGSIPSCINKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPEL 551

Query: 471 ARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAG 530
             LPVL  LDLS+N L+G+IPA+      L   NVS N + G IPSG    +   S + G
Sbjct: 552 GDLPVLNYLDLSNNQLTGEIPAELLRL-KLNQFNVSDNKLYGKIPSGFQQDIFRPS-FLG 609

Query: 531 NPKLCGA---PLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIF-----FFRR 582
           NP LC     P++PC +          + +++L +    ++ +  AL+ +F      F+R
Sbjct: 610 NPNLCAPNLDPIRPCRSK--------RETRYILPISILCIVALTGALVWLFIKTKPLFKR 661

Query: 583 GGKGHWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEW 642
             K   K+  F  +  FT  D+      TE        S    +  L +G T++VKK+ W
Sbjct: 662 KPKRTNKITIFQRV-GFTEEDIYPQL--TEDNIIGSGGSGLVYRVKLKSGQTLAVKKL-W 717

Query: 643 GATRIKIVSEFITR-----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTK 697
           G T  K  SE + R     +G VRH N+++LL  C      +L+Y+++ NG+L + + ++
Sbjct: 718 GETGQKTESESVFRSEVETLGRVRHGNIVKLLMCCNGEEFRFLVYEFMENGSLGDVLHSE 777

Query: 698 R--------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 749
           +        DW  ++ I +G A+GL +LHHD  P I H D+K++NI+ D  M+P +A+FG
Sbjct: 778 KEHRAVSPLDWTTRFSIAVGAAQGLSYLHHDSVPPIVHRDVKSNNILLDHEMKPRVADFG 837

Query: 750 FKYLTQLADGSFPAKIAWTESGEFYNAMKEEM--------YMDVYGFGEIILEILTNGRL 801
                +  D    + ++ +     Y  +  E           DVY FG ++LE++T G+ 
Sbjct: 838 LAKPLKREDNDGVSDVSMSCVAGSYGYIAPEYGYTSKVNEKSDVYSFGVVLLELIT-GKR 896

Query: 802 TNAGSSLQNKPIDGLLGE-------------MYNENEVGSSSSLQ--------------D 834
            N  S  +NK I     E               N++ +G+   L               +
Sbjct: 897 PNDSSFGENKDIVKFAMEAALCYPSPSAEDGAMNQDSLGNYRDLSKLVDPKMKLSTREYE 956

Query: 835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK 868
           EI+ VLDVALLCT S P +RP+M + ++LL   K
Sbjct: 957 EIEKVLDVALLCTSSFPINRPTMRKVVELLKEKK 990

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  437 bits (1123), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 291/922 (31%), Positives = 463/922 (50%), Gaps = 95/922 (10%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           F+ +  ++LS  + +G FP  I  L++L  L +  N+ +   P  I + ++L  LD   N
Sbjct: 59  FSSVTSVDLSSANLAGPFPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQN 118

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             +G +P  ++ +  L  L+L G+ FSG IP+ FG F++LE L L  NLL+  IP  LG 
Sbjct: 119 LLTGELPQTLADIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGN 178

Query: 137 LKTVTHMEIGYN-FYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
           + T+  + + YN F    IP + GN++ ++ + +   +L G IP  L  L+KL  L L  
Sbjct: 179 ISTLKMLNLSYNPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLAL 238

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           N L G +P     +T +  ++L +N L+G IP    +LK+LRLL    N+++G +P+ L 
Sbjct: 239 NDLVGHIPPSLGGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDELC 298

Query: 256 QL-----------------------PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTN 292
           ++                       P+L  + I+ N  +G LP++LG NS LRW+DVS N
Sbjct: 299 RVPLESLNLYENNLEGELPASIALSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSEN 358

Query: 293 NFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQ 352
            F+G +P D+C+ G L +L++  N+F+G +  SL++C SL R+RL  N FSG +P  F  
Sbjct: 359 EFSGDLPADLCAKGELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWG 418

Query: 353 LPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASA 412
           LP +N ++L  N F+G I   I  AS L    +SNN +  G +P +  SL +L   SAS 
Sbjct: 419 LPHVNLLELVNNSFSGEISKSIGGASNLSLLILSNN-EFTGSLPEEIGSLDNLNQLSASG 477

Query: 413 CNITGNLPP-FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLA 471
              +G+LP    S   +  ++ H N  SG +   + +  +L  ++LA+N+  G IP+ + 
Sbjct: 478 NKFSGSLPDSLMSLGELGTLDLHGNQFSGELTSGIKSWKKLNELNLADNEFTGKIPDEIG 537

Query: 472 RLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGN 531
            L VL  LDLS N  SG+IP    S   L  LN+S+N +SG +P   + + M  +++ GN
Sbjct: 538 SLSVLNYLDLSGNMFSGKIPVSLQSL-KLNQLNLSYNRLSGDLPP-SLAKDMYKNSFIGN 595

Query: 532 PKLCGAPLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFF--------RRG 583
           P LCG     C +      +G   L   + + A +V+    A    F+F        R  
Sbjct: 596 PGLCGDIKGLCGSENEAKKRGYVWLLRSIFVLAAMVLLAGVAW---FYFKYRTFKKARAM 652

Query: 584 GKGHWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWG 643
            +  W ++SF  L  F+ +++L S +      A    S    K VL  G TV+VK++  G
Sbjct: 653 ERSKWTLMSFHKL-GFSEHEILESLDEDNVIGAG--ASGKVYKVVLTNGETVAVKRLWTG 709

Query: 644 ATR----------------IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           + +                 +     +  +G +RHKN+++L   C  R    L+Y+Y+PN
Sbjct: 710 SVKETGDCDPEKGYKPGVQDEAFEAEVETLGKIRHKNIVKLWCCCSTRDCKLLVYEYMPN 769

Query: 688 GNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           G+L + + + +     W  ++KI+L  A GL +LHHD  P I H D+K++NI+ D +   
Sbjct: 770 GSLGDLLHSSKGGMLGWQTRFKIILDAAEGLSYLHHDSVPPIVHRDIKSNNILIDGDYGA 829

Query: 744 HLAEFGFKYLTQLADGSFPAKIAWTESG------EFYNAMKEEMYMDVYGFGEIILEILT 797
            +A+FG      L  G  P  ++           E+   ++     D+Y FG +ILEI+T
Sbjct: 830 RVADFGVAKAVDLT-GKAPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILEIVT 888

Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS---------------SSLQDEIKLVLDV 842
             R           P+D  LGE      V S+               S  ++EI  +L+V
Sbjct: 889 RKR-----------PVDPELGEKDLVKWVCSTLDQKGIEHVIDPKLDSCFKEEISKILNV 937

Query: 843 ALLCTRSTPSDRPSMEEALKLL 864
            LLCT   P +RPSM   +K+L
Sbjct: 938 GLLCTSPLPINRPSMRRVVKML 959

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  433 bits (1114), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 305/945 (32%), Positives = 460/945 (48%), Gaps = 110/945 (11%)

Query: 23   LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 82
            L+LS N   G  P  +  L +L +L ++ N  +G  P  I     L  L  F N  +GS+
Sbjct: 134  LDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSI 193

Query: 83   PAEISQLEHLKVLNLAGSY-FSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVT 141
            P E+ +L  L+V+ + G+   SG IPS+ G   +L  L LA   ++  +P+ LG LK + 
Sbjct: 194  PTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLE 253

Query: 142  HMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQ 201
             + I      G IP  LGN SE+  L +   +LSGSIP+E+  LTKLE LFL++N L G 
Sbjct: 254  TLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGG 313

Query: 202  VPWEFSRVTTLKSLDLS------------------------DNRLSGPIPESFADLKNLR 237
            +P E    + LK +DLS                        DN+ SG IP + ++  +L 
Sbjct: 314  IPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLV 373

Query: 238  LLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGS 297
             L L  N++SG +P  L  L  L + F W+N   GS+P  L   + L+ +D+S N+  G+
Sbjct: 374  QLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGT 433

Query: 298  IPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDIN 357
            IP  +     L KL+L SN+ +G +   + NCSSLVRLRL  N  +GEIP     L  IN
Sbjct: 434  IPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKIN 493

Query: 358  YIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG 417
            ++D S N   G +P +I   S+L+  ++SNN  L G +P    SL  LQ    SA   +G
Sbjct: 494  FLDFSSNRLHGKVPDEIGSCSELQMIDLSNN-SLEGSLPNPVSSLSGLQVLDVSANQFSG 552

Query: 418  NLPP-------------------------FKSCKSISVIESHMNNLSGTIPESVSNCVEL 452
             +P                             C  + +++   N LSG IP  + +   L
Sbjct: 553  KIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENL 612

Query: 453  E-RIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
            E  ++L++N+L G IP  +A L  L +LDLSHN L G + A   +  +L  LN+S+N  S
Sbjct: 613  EIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLANIENLVSLNISYNSFS 671

Query: 512  GSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTGK---------------- 555
            G +P  K+ R +      GN KLC +    C  +    G G G                 
Sbjct: 672  GYLPDNKLFRQLSPQDLEGNKKLCSSTQDSCFLTYRK-GNGLGDDGDASRTRKLRLTLAL 730

Query: 556  --LKFVLLLCAGIVMFIAAALLGIFFFRRGGKGH---WKMISFLGLPQFTANDVLRSFNS 610
                 V+L+  G V  I A    I   R    G    W+   F  L  F+ + ++R    
Sbjct: 731  LITLTVVLMILGAVAVIRAR-RNIDNERDSELGETYKWQFTPFQKL-NFSVDQIIRCL-- 786

Query: 611  TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT-------RIKIV----SEFITRIGT 659
             E     +  S    +A +  G  ++VKK+ W A        + K V    S  +  +GT
Sbjct: 787  VEPNVIGKGCSGVVYRADVDNGEVIAVKKL-WPAMVNGGHDEKTKNVRDSFSAEVKTLGT 845

Query: 660  VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLC 715
            +RHKN++R LG C+NR+   L+YDY+PNG+L   +  +R    DW  +Y+I+LG A+GL 
Sbjct: 846  IRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERRGSSLDWDLRYRILLGAAQGLA 905

Query: 716  FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESG---- 771
            +LHHDC P I H D+KA+NI+   + EP++A+FG   L +L D     + + T +G    
Sbjct: 906  YLHHDCLPPIVHRDIKANNILIGLDFEPYIADFG---LAKLVDEGDIGRCSNTVAGSYGY 962

Query: 772  ---EFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-----EMYNE 823
               E+  +MK     DVY +G ++LE+LT  +  +         +D +       E+ + 
Sbjct: 963  IAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPIDPTVPEGIHLVDWVRQNRGSLEVLDS 1022

Query: 824  NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK 868
                 + +  DE+  VL  ALLC  S+P +RP+M++   +L  +K
Sbjct: 1023 TLRSRTEAEADEMMQVLGTALLCVNSSPDERPTMKDVAAMLKEIK 1067

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	872
224144009	953	predicted protein [Populus trichocarpa]	0.995	0.910	0.734	0.0
224088234	955	predicted protein [Populus trichocarpa]	0.993	0.906	0.736	0.0
359484751	972	PREDICTED: leucine-rich repeat receptor-	0.993	0.890	0.726	0.0
255565085	958	Receptor protein kinase CLAVATA1 precurs	0.997	0.908	0.728	0.0
449443009	959	PREDICTED: leucine-rich repeat receptor-	0.998	0.908	0.663	0.0
356556623	960	PREDICTED: leucine-rich repeat receptor-	0.987	0.896	0.684	0.0
356533009	960	PREDICTED: leucine-rich repeat receptor-	0.988	0.897	0.680	0.0
297795941	894	predicted protein [Arabidopsis lyrata su	0.910	0.888	0.592	0.0
15242059	895	putative leucine-rich repeat transmembra	0.910	0.887	0.580	0.0
357448387	923	Receptor-like kinase [Medicago truncatul	0.924	0.873	0.534	0.0

>gi|224144009|ref|XP_002325155.1| predicted protein [Populus trichocarpa] gi|222866589|gb|EEF03720.1| predicted protein [Populus trichocarpa]

 Score = 1311 bits (3393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/873 (73%), Positives = 740/873 (84%), Gaps = 5/873 (0%)

Query: 1   MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPG 60
           MK L G L GK   +F  ELVDLNLS+NSFSGQ PV IFNLT+L S DISRNNFSG FPG
Sbjct: 85  MKNLGGELTGKQFGVF-AELVDLNLSYNSFSGQLPVGIFNLTNLKSFDISRNNFSGQFPG 143

Query: 61  GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
           GI SLRNL+VLDAFSNSFSG +P E+SQLE+LKV NLAGSYF GPIPS++GSFKSLEF+H
Sbjct: 144 GISSLRNLVVLDAFSNSFSGPLPVEVSQLEYLKVFNLAGSYFDGPIPSEYGSFKSLEFIH 203

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           LAGN L+  IP ELG LKTVTHMEIGYN Y+G+IPWQ+GNMSE+QYLDIAGANLSG IPK
Sbjct: 204 LAGNSLSGNIPPELGQLKTVTHMEIGYNSYEGSIPWQMGNMSELQYLDIAGANLSGPIPK 263

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           +LSNLTKLESLFLFRNQL G VPWEF ++  L SLDLSDN+LSGPIPESFA+LKNL+LLS
Sbjct: 264 QLSNLTKLESLFLFRNQLTGLVPWEFRQIVPLASLDLSDNQLSGPIPESFAELKNLKLLS 323

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           LMYNEM+GTVP  + QLPSLE L IWNN+FSGSLP +LG+N KL+WVDVSTNNF GSIPP
Sbjct: 324 LMYNEMNGTVPPGIGQLPSLETLLIWNNFFSGSLPNDLGKNLKLKWVDVSTNNFIGSIPP 383

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
           DIC+GG L KLILFSNNFTGSL+PS+SNCSSLVRLR+EDNSFSGEIPLKFS LPDI Y+D
Sbjct: 384 DICAGG-LVKLILFSNNFTGSLTPSISNCSSLVRLRIEDNSFSGEIPLKFSHLPDITYVD 442

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
           LSRN FTGGIPTDI+QAS+L+YFN+SNNP LGGMIPA+TWSL  LQNFSASACNI+GNLP
Sbjct: 443 LSRNKFTGGIPTDISQASRLQYFNISNNPGLGGMIPAKTWSLQLLQNFSASACNISGNLP 502

Query: 421 PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLD 480
           PF SCKS+SVIE  MNNLSG++P  VSNC  L ++DLA+NK  G IPE LA LP L VLD
Sbjct: 503 PFHSCKSVSVIELRMNNLSGSVPGDVSNCQALGKMDLADNKFTGHIPEDLASLPALSVLD 562

Query: 481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQ 540
           LSH++ SG IPAKFG+ SSL +LNVSFNDISGSIPS  V +LMG+SAY GNPKLCGAPL+
Sbjct: 563 LSHDNFSGPIPAKFGASSSLVLLNVSFNDISGSIPSSNVFKLMGTSAYQGNPKLCGAPLE 622

Query: 541 PCHASVAILG-KGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQF 599
           PC AS+ I G KGT K  ++LLLCAG+V+ I A+  G+F+ RRG KGHWKM+SF GLP+F
Sbjct: 623 PCSASITIFGSKGTRKHTWILLLCAGVVVLIVASAFGVFYIRRGSKGHWKMVSFSGLPRF 682

Query: 600 TANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGT 659
           TA+DVLRSF+STE  EA  P+S + CKAVLPTGITVSVKKIE  A  +K  +EF+TR+G 
Sbjct: 683 TASDVLRSFSSTESMEAVPPESNSVCKAVLPTGITVSVKKIELEAKTMKKATEFMTRLGV 742

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 719
            RHKNLIRLLGFCYN+  AY+LYDY PNGNL+EKI  KRDW AKYK+V+G+ARGLCFLHH
Sbjct: 743 ARHKNLIRLLGFCYNKQLAYVLYDYQPNGNLAEKITLKRDWVAKYKLVIGIARGLCFLHH 802

Query: 720 DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE 779
           DCYPAIPHGDLK SNI+FDENMEPHLA+FGFKYL ++  GS PA I   E+GE  +++KE
Sbjct: 803 DCYPAIPHGDLKLSNILFDENMEPHLADFGFKYLVEMTKGSSPATIFMGETGELNSSIKE 862

Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV 839
           E+YMD+Y FGEIIL+ILTN  L NAG ++ +KP + LL E+Y+EN+ GS+ S Q+EIKLV
Sbjct: 863 ELYMDIYRFGEIILQILTN--LANAGGTIHSKPKEVLLREIYSENQTGSTDSTQEEIKLV 920

Query: 840 LDVALLCTRSTPSDRPSMEEALKLLSGLKPHGK 872
           L+VALLC +S PSDRPSME+ALKLLSG+K   K
Sbjct: 921 LEVALLCIKSRPSDRPSMEDALKLLSGMKSQRK 953

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088234|ref|XP_002308383.1| predicted protein [Populus trichocarpa] gi|222854359|gb|EEE91906.1| predicted protein [Populus trichocarpa]

 Score = 1310 bits (3389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/869 (73%), Positives = 734/869 (84%), Gaps = 3/869 (0%)

Query: 1   MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPG 60
           MK L G L GK   +F  ELVDLN S+NSFSGQ PV IFNLT+L  LDISRNNFSG FP 
Sbjct: 85  MKNLGGELSGKQFSVF-TELVDLNFSYNSFSGQLPVGIFNLTNLKILDISRNNFSGQFPE 143

Query: 61  GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
           GI  LRNL+VLDAFSNSFSG +P E+SQL++LK+LNLAGSYF GPIPS++GSFKSLEF+H
Sbjct: 144 GISGLRNLVVLDAFSNSFSGPLPVEVSQLDYLKILNLAGSYFDGPIPSKYGSFKSLEFIH 203

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           LAGN L   IP ELG LKTVTHMEIGYN Y+G++PWQL NMSE+QYLDIA ANLSG IPK
Sbjct: 204 LAGNFLGGTIPPELGQLKTVTHMEIGYNSYEGSVPWQLSNMSELQYLDIASANLSGPIPK 263

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           +LSNLTKLESLFLFRNQL G VPWEF ++  L SLDLSDN LSGPIPESFA+LKNL+LLS
Sbjct: 264 QLSNLTKLESLFLFRNQLTGSVPWEFGKIVPLASLDLSDNHLSGPIPESFAELKNLKLLS 323

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           LMYNEM+GTVP+ + QLPSLE   IWNN+FSGSLP +LGRN KL+WVDVSTNNF GSIPP
Sbjct: 324 LMYNEMNGTVPQGIGQLPSLETFLIWNNFFSGSLPRDLGRNLKLKWVDVSTNNFIGSIPP 383

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
           DIC+GG L KLILFSNNFTG LSPS+SNCSSLVRLR+EDNSFSGEIPLKFSQLPDI Y+D
Sbjct: 384 DICAGG-LVKLILFSNNFTGKLSPSISNCSSLVRLRIEDNSFSGEIPLKFSQLPDITYVD 442

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
           LS N F+GGIPTDI+QAS L YFN+SNNP LGGMIPA+TWS P LQNFSASACNI+GNLP
Sbjct: 443 LSGNEFSGGIPTDISQASNLRYFNISNNPGLGGMIPAKTWSSPLLQNFSASACNISGNLP 502

Query: 421 PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLD 480
           PF SCKS+SVIE H NNL+G++P SVS+C  L ++DLA NK  G IPE LA LP L VLD
Sbjct: 503 PFHSCKSVSVIELHTNNLAGSVPGSVSDCQALRKMDLAFNKFTGHIPEDLASLPGLSVLD 562

Query: 481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQ 540
           LSHN+ SG IPAKFG+ SSL +LNVSFNDISGSIPS  V RLMGS+AY GNPKLCGAPL+
Sbjct: 563 LSHNNFSGPIPAKFGASSSLVLLNVSFNDISGSIPSNNVFRLMGSNAYEGNPKLCGAPLK 622

Query: 541 PCHASVAIL-GKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQF 599
           PC AS+AI  GKGT KL +VLLLCAG+V+ I A++LGIF+ RRG KG WKM+SF GLP+F
Sbjct: 623 PCSASIAIFGGKGTRKLTWVLLLCAGLVVLIVASILGIFYIRRGSKGQWKMVSFSGLPRF 682

Query: 600 TANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGT 659
           TANDVLRSF+STE  EA   +S++ CKAVLPTGITVSVKKIE    R+K  +EF+TR+G 
Sbjct: 683 TANDVLRSFSSTESMEAVPAESSSVCKAVLPTGITVSVKKIELETKRMKKATEFMTRLGV 742

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 719
            RHKNLIRLLGFCYN+  AY+L+DY PNGNL+EKI  KRDW AKYK+V+G+ARGLCFLHH
Sbjct: 743 ARHKNLIRLLGFCYNKQLAYVLHDYQPNGNLAEKISLKRDWMAKYKLVIGIARGLCFLHH 802

Query: 720 DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE 779
           DCYPAIPHGDLK SNI+FDENMEPHLAEFGFKYL ++  GS PA I+  E+GE  +A+KE
Sbjct: 803 DCYPAIPHGDLKLSNILFDENMEPHLAEFGFKYLVEMTKGSSPATISMRETGELNSAIKE 862

Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV 839
           E+ MD Y FGEI+LEILTNGRL NAG S+Q+KP + LL E+Y+ N+ GS+ ++Q+EIKLV
Sbjct: 863 ELCMDTYKFGEIVLEILTNGRLANAGGSIQSKPKEVLLREIYSANQTGSADAMQEEIKLV 922

Query: 840 LDVALLCTRSTPSDRPSMEEALKLLSGLK 868
            +VALLC RS PSDRPSME+ALKLLSG+K
Sbjct: 923 FEVALLCMRSRPSDRPSMEDALKLLSGVK 951

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484751|ref|XP_002264530.2| PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Vitis vinifera]

 Score = 1298 bits (3360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/873 (72%), Positives = 743/873 (85%), Gaps = 7/873 (0%)

Query: 2   KGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGG 61
           K L G + GK   +F  ELVDLNLS+NSFS Q PVEIFNLT+L SLDISRNNFSGHFPGG
Sbjct: 85  KNLGGIISGKQFSVF-TELVDLNLSYNSFSEQLPVEIFNLTNLRSLDISRNNFSGHFPGG 143

Query: 62  IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL 121
           +  L +L+VLDAFSNSFSG +P E+SQLE+LKVLNLAGSYF GPIPS++GSFKSLEF+HL
Sbjct: 144 VSRLEHLVVLDAFSNSFSGPLPTEVSQLEYLKVLNLAGSYFKGPIPSEYGSFKSLEFIHL 203

Query: 122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 181
           AGNLL+  IP ELG L TVTHMEIGYN YQG+IPWQLGNM+E+QYLDIAGA+LSGSIPK+
Sbjct: 204 AGNLLSGSIPPELGKLSTVTHMEIGYNSYQGSIPWQLGNMTEIQYLDIAGADLSGSIPKQ 263

Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
           LSNLTKL+SLFLFRNQL G +P EFSR+ TL  LDLSDN+LSG IPESF++LKNLRLLSL
Sbjct: 264 LSNLTKLQSLFLFRNQLTGLIPSEFSRIVTLTDLDLSDNQLSGSIPESFSELKNLRLLSL 323

Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
           MYN+MSGTVPES+ +LP L+ L IWNN+FSGSLP++LG NSKL+WVDVSTNNFNG IPP+
Sbjct: 324 MYNDMSGTVPESIAELPLLDTLLIWNNFFSGSLPQSLGTNSKLKWVDVSTNNFNGPIPPE 383

Query: 302 ICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDL 361
           IC+GGVLFKLILFSNNFTG LSPSLSNCSSLVRLRLE+NSFSGEIPL+FS LP+I Y+DL
Sbjct: 384 ICTGGVLFKLILFSNNFTGGLSPSLSNCSSLVRLRLENNSFSGEIPLRFSHLPEITYVDL 443

Query: 362 SRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP 421
           S NGFTGGIPTDI+QAS L+YFNVS N +LGGM+PA+ WSLP LQNFSAS+C I+G++P 
Sbjct: 444 SGNGFTGGIPTDISQASNLQYFNVSKNSELGGMLPAKIWSLPLLQNFSASSCKISGHIPA 503

Query: 422 FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDL 481
           F+ CK+I+VIE  MNNLSG IPES+S+C  LE ++LANN   G IPE LA L  L V+DL
Sbjct: 504 FQVCKNITVIEVSMNNLSGIIPESISSCQALEMVNLANNNFTGHIPEQLASLHELAVVDL 563

Query: 482 SHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQP 541
           SHN+L+G IP K  + SSL ++NVSFNDISGSIPS K+ R+MGSSA+ GN KLCG PL+P
Sbjct: 564 SHNNLTGPIPEKLSNLSSLLLINVSFNDISGSIPSEKIFRVMGSSAFVGNSKLCGEPLKP 623

Query: 542 CHASVAI-----LG-KGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLG 595
           C  S  I     LG K   KLK+VLLLCAG+++FI  ++LGIF+FRRG KG W+M+SF G
Sbjct: 624 CADSEGIQHGFKLGSKSKDKLKWVLLLCAGVLLFILVSVLGIFYFRRGSKGRWEMVSFSG 683

Query: 596 LPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFIT 655
           LP+FTANDVLRSF+STE  E   P S++ CKAVLPTGITVSVKKIEW A R+K++SEFIT
Sbjct: 684 LPRFTANDVLRSFSSTESMETTPPLSSSVCKAVLPTGITVSVKKIEWEAKRMKVMSEFIT 743

Query: 656 RIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLC 715
           RIG  RHKNLIRLLGFCYN+H AYLLYDYLPNGNL+EKIR KRDW AKYKIV+G+ARGL 
Sbjct: 744 RIGNARHKNLIRLLGFCYNKHVAYLLYDYLPNGNLAEKIRMKRDWTAKYKIVIGIARGLH 803

Query: 716 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYN 775
           +LHH+CYPAIPHGDLK+S+I+FDENMEPHLAEFGFK L +L   S P+ I+ TE+GEF  
Sbjct: 804 YLHHECYPAIPHGDLKSSDILFDENMEPHLAEFGFKLLAELNKASLPSTISRTETGEFNP 863

Query: 776 AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE 835
           A+KEE+Y D+Y FGE+I+E +TNGRLTNAG S+Q+KP + LL E+YNENEVGS+ S+Q+E
Sbjct: 864 AIKEELYTDIYSFGEVIMETITNGRLTNAGGSIQSKPREALLREIYNENEVGSADSMQEE 923

Query: 836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK 868
           IKLV +VALLCTRS PSDRPSME+ L LLSGLK
Sbjct: 924 IKLVFEVALLCTRSRPSDRPSMEDVLNLLSGLK 956

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565085|ref|XP_002523535.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] gi|223537242|gb|EEF38874.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

 Score = 1287 bits (3331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/874 (72%), Positives = 737/874 (84%), Gaps = 4/874 (0%)

Query: 2   KGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGG 61
           K L GA PGK   +F  ELVDLNLS+NSFSG+ PVEIFNLT+L SLD SRNNFSG FP G
Sbjct: 86  KNLGGAFPGKHFSVF-TELVDLNLSYNSFSGRLPVEIFNLTNLRSLDFSRNNFSGQFPSG 144

Query: 62  IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL 121
           I SL+NL+VLDAFSNSFSG +P EISQLE++K++NLAGSYF GPIP ++GSF+SLEF+HL
Sbjct: 145 ISSLQNLVVLDAFSNSFSGLLPVEISQLEYIKIVNLAGSYFDGPIPPEYGSFRSLEFIHL 204

Query: 122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 181
           AGNLL+  IP ELG LKTVTHMEIGYN YQG+IPWQLGNMSE+QYLDIAGA+L+GSIPKE
Sbjct: 205 AGNLLSGNIPPELGRLKTVTHMEIGYNSYQGSIPWQLGNMSEIQYLDIAGASLTGSIPKE 264

Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
           LSNLTKL SLFLFRN L G VPWEF R+  L SLDLSDN+LSGPIPESF++LKNL+LLSL
Sbjct: 265 LSNLTKLRSLFLFRNHLTGLVPWEFGRIEPLSSLDLSDNQLSGPIPESFSELKNLKLLSL 324

Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
           MYNEM+GTVP+ + QLPSL+ L IWNN+FSGSLPE+LGRNSKL+WVDVSTNNF GSIPPD
Sbjct: 325 MYNEMNGTVPQGIAQLPSLDTLLIWNNFFSGSLPEDLGRNSKLKWVDVSTNNFVGSIPPD 384

Query: 302 ICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDL 361
           IC+GGVLFKLILFSNNFTGSLSPS+S CSSLVRLR+EDNSF GEIPLKF+ LPDI Y+DL
Sbjct: 385 ICAGGVLFKLILFSNNFTGSLSPSISKCSSLVRLRIEDNSFWGEIPLKFNNLPDITYVDL 444

Query: 362 SRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP 421
           SRN FTGGIP DI QA +L+YFN+SNNP+LGG IP +TWS P LQNFSAS CNI+GN+PP
Sbjct: 445 SRNKFTGGIPIDIFQAPQLQYFNISNNPELGGTIPTKTWSSPLLQNFSASGCNISGNVPP 504

Query: 422 FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDL 481
           F SCKS+SVIE  MNNL G +P S+S C  LE++DLA+NK  G IPE LA LP L  +DL
Sbjct: 505 FHSCKSVSVIELDMNNLEGNVPVSISKCHNLEKMDLASNKFSGHIPEELASLPALSFIDL 564

Query: 482 SHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQP 541
           SHN+ SG IPAKFG  S L +LNVSFNDISGSIP  K+ RL+GSSA++GN KLCGAPL+P
Sbjct: 565 SHNNFSGHIPAKFGDPSRLKLLNVSFNDISGSIPPKKLFRLIGSSAFSGNSKLCGAPLRP 624

Query: 542 CHASVAILG-KGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQFT 600
           CHAS+AILG KGT KL +VLLL AG+V+FI A+  GIF+ RRG KG WKM+SF GLP+FT
Sbjct: 625 CHASMAILGSKGTRKLTWVLLLSAGVVLFIVASAWGIFYIRRGSKGQWKMVSFNGLPRFT 684

Query: 601 ANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTV 660
           ANDVLRSF+ TE  EAA P SA+ CKAVLPTGITVSVKKIE+ A R+ +V+EF+ R+G  
Sbjct: 685 ANDVLRSFSFTESMEAAPPLSASVCKAVLPTGITVSVKKIEFEAKRMMMVTEFVMRMGNA 744

Query: 661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHD 720
           RHKNLIRLLG CYN+  AYLLYDYLPNGNL+EKI  KRDW AKYK+V G+ARGLCFLHHD
Sbjct: 745 RHKNLIRLLGLCYNKQLAYLLYDYLPNGNLAEKINVKRDWPAKYKLVTGIARGLCFLHHD 804

Query: 721 CYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA-MKE 779
           CYPAIPHGDL++SNIVFDENMEPHLAEFG K+L ++  GS  A I+  E+GE  N+ +KE
Sbjct: 805 CYPAIPHGDLRSSNIVFDENMEPHLAEFGIKFLAEMIKGSSLATISMKETGEILNSRIKE 864

Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKL 838
           E+YMD+Y FGEIILEILTNGR+ NAG S+Q+KP + LL E+YN      SS S+Q+EIK 
Sbjct: 865 ELYMDIYSFGEIILEILTNGRMANAGGSIQSKPKEVLLREIYNENEASSSSESMQEEIKQ 924

Query: 839 VLDVALLCTRSTPSDRPSMEEALKLLSGLKPHGK 872
           VL+VALLCTRS P+DRP ME+ALKLLSG +P  K
Sbjct: 925 VLEVALLCTRSRPADRPPMEDALKLLSGFRPQRK 958

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443009|ref|XP_004139273.1| PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Cucumis sativus] gi|449493663|ref|XP_004159400.1| PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Cucumis sativus]

 Score = 1170 bits (3028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/873 (66%), Positives = 696/873 (79%), Gaps = 2/873 (0%)

Query: 1   MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPG 60
           MK L G + G+   +F  ELVDLNLSHN  SG+ PV IFNLT+L SLDISRNNFSGHFP 
Sbjct: 84  MKRLGGGISGEQFHVF-KELVDLNLSHNYISGKLPVGIFNLTNLRSLDISRNNFSGHFPL 142

Query: 61  GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
           GI SL+NL+VLDAFSNSF+GS+P ++SQLE+LK LN AGSYF GPIPS++GSFK LEF+H
Sbjct: 143 GISSLQNLVVLDAFSNSFAGSLPVDLSQLENLKFLNFAGSYFKGPIPSEYGSFKKLEFIH 202

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           LAGN L+  +P ELG LKTVTHMEIGYN +QGN+PW+ GNMS +QYLDIA ANLSGSIPK
Sbjct: 203 LAGNFLSGNLPPELGKLKTVTHMEIGYNNFQGNLPWEFGNMSNLQYLDIASANLSGSIPK 262

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           E  NLTKLESLFLFRNQL+G +P E S++ +L +LDLSDN +SGPIPESF++LKNLRLLS
Sbjct: 263 EFGNLTKLESLFLFRNQLSGFLPDELSKIISLVNLDLSDNHISGPIPESFSELKNLRLLS 322

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           +MYNEMSG+VP+ + +LPSLE L IW+N FSGSLP NLG N KL+WVDVSTNNF G IPP
Sbjct: 323 VMYNEMSGSVPKGIGELPSLETLLIWSNQFSGSLPNNLGSNKKLKWVDVSTNNFVGVIPP 382

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
           DIC GG+LFKLILFSN F+G LSPSL+NCSSLVRLRLEDN FSG+I L F+ L  ++YID
Sbjct: 383 DICQGGLLFKLILFSNKFSGGLSPSLTNCSSLVRLRLEDNVFSGDISLNFNDLAHVSYID 442

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
           LSRN F+GG+P DIN+AS L+Y N+S+NP+LGG+ P +TW  P LQNFSAS C I GNLP
Sbjct: 443 LSRNNFSGGVPLDINKASNLQYLNISHNPQLGGVFPVETWISPLLQNFSASGCGIRGNLP 502

Query: 421 PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLD 480
            F+ CKSIS IE + N LSG IPES++NC  L R+DL+ N L G IPE LA LP + +LD
Sbjct: 503 KFQVCKSISTIELNNNKLSGKIPESIANCQALVRMDLSYNNLSGHIPEELAHLPSINILD 562

Query: 481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQ 540
           LSHN  +G IP KF   SSL +LNVS+NDISGSIP  +V R MG SA+ GN KLCGAPL+
Sbjct: 563 LSHNDFNGTIPDKFKDSSSLLLLNVSYNDISGSIPEKEVFRSMGRSAFTGNSKLCGAPLR 622

Query: 541 PCHASVAIL-GKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQF 599
           PC  S+A++ GKG GK   +L+LCAG+ +    +LL IFF RRG KG WKM+SF GLP F
Sbjct: 623 PCSGSLAMIGGKGMGKFILILILCAGLAIITVISLLWIFFVRRGSKGKWKMVSFTGLPPF 682

Query: 600 TANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGT 659
           TAND+LRSF+STE +EA  P SA+  KAVLPTGITVS+KKI+W A R+K +SEFIT++G+
Sbjct: 683 TANDILRSFDSTESKEAILPLSASIFKAVLPTGITVSIKKIDWEAKRMKTISEFITQLGS 742

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 719
           +RHKNL+RLLGFCYN+   YLLYDYLPNGNL+EKI TKR+W  K K+++G+ARG+ FLHH
Sbjct: 743 LRHKNLVRLLGFCYNKQMVYLLYDYLPNGNLAEKISTKREWPTKLKLIIGIARGVHFLHH 802

Query: 720 DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE 779
           DC PAIPHGDLK +NI+FDENMEP LAEFG ++L QL + + P          F NA +E
Sbjct: 803 DCSPAIPHGDLKPNNIIFDENMEPRLAEFGLRFLQQLNEDTLPLSSTTKGGDNFNNATEE 862

Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV 839
           E++MDV+ FGEIILEI++NGRLT AGSS QNK  D LL E+  EN   S +S Q+EI+ V
Sbjct: 863 ELWMDVHSFGEIILEIISNGRLTTAGSSTQNKARDLLLREICKENGTSSPNSSQEEIEQV 922

Query: 840 LDVALLCTRSTPSDRPSMEEALKLLSGLKPHGK 872
           LD+ALLCTRS PS+RPSME+ LKLLS +KP  K
Sbjct: 923 LDLALLCTRSRPSNRPSMEDILKLLSDIKPEVK 955

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556623|ref|XP_003546623.1| PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Glycine max]

 Score = 1167 bits (3018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/869 (68%), Positives = 697/869 (80%), Gaps = 8/869 (0%)

Query: 1   MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPG 60
           MK L G + GK   IF N L  LNLSHN FSGQ P EIFNLTSL SLDISRNNFSG FPG
Sbjct: 87  MKKLGGVVSGKQFIIFTN-LTSLNLSHNFFSGQLPAEIFNLTSLTSLDISRNNFSGPFPG 145

Query: 61  GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
           GI  L+NL+VLDAFSNSFSG +PAE SQLE+LKVLNLAGSYF G IP ++GSFKSLEFLH
Sbjct: 146 GIPRLQNLVVLDAFSNSFSGPLPAEFSQLENLKVLNLAGSYFRGSIPPEYGSFKSLEFLH 205

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           LAGN L   IP ELG LKTVTHMEIGYN YQG IP +LGNMS++QYLDIAGANLSG IPK
Sbjct: 206 LAGNSLTGSIPPELGHLKTVTHMEIGYNEYQGFIPPELGNMSQLQYLDIAGANLSGPIPK 265

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           +LSNLT L+S+FLFRNQL G +P E S +  L  LDLSDN L G IPESF++L+NLRLLS
Sbjct: 266 QLSNLTSLQSIFLFRNQLTGSIPSELSIIEPLTDLDLSDNFLIGSIPESFSELENLRLLS 325

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           +MYN+MSGTVPES+ +LPSLE L IWNN FSGSLP +LGRNSKL+WVD STN+  GSIPP
Sbjct: 326 VMYNDMSGTVPESIAKLPSLETLLIWNNRFSGSLPPSLGRNSKLKWVDASTNDLVGSIPP 385

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
           DIC+ G LFKLILFSN FTG LS S+SNCSSLVRLRLEDNSFSGEI LKFS LPDI Y+D
Sbjct: 386 DICASGELFKLILFSNKFTGGLS-SISNCSSLVRLRLEDNSFSGEITLKFSHLPDILYVD 444

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
           LS+N F GGIP+DI+QA++LEYFNVS NP+LGG+IP+QTWSLP LQNFSAS+C I+ +LP
Sbjct: 445 LSKNNFVGGIPSDISQATQLEYFNVSYNPQLGGIIPSQTWSLPQLQNFSASSCGISSDLP 504

Query: 421 PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLD 480
            F+SCKSISVI+   N+LSGTIP  VS C  LE+I+L+NN L G IP+ LA +PVLGV+D
Sbjct: 505 LFESCKSISVIDLDSNSLSGTIPNGVSKCQALEKINLSNNNLTGHIPDELASIPVLGVVD 564

Query: 481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQ 540
           LS+N  +G IPAKFGS S+L +LNVSFN+ISGSIP+ K  +LMG SA+ GN +LCGAPLQ
Sbjct: 565 LSNNKFNGPIPAKFGSSSNLQLLNVSFNNISGSIPTAKSFKLMGRSAFVGNSELCGAPLQ 624

Query: 541 PCHASVAILG-KGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQF 599
           PC  SV ILG KGT K+  ++LL  G+++ +   + GI + RRG K  WKM SF GLPQF
Sbjct: 625 PCPDSVGILGSKGTWKVTRIVLLSVGLLIVLLGLVFGILYLRRGIKSQWKMASFAGLPQF 684

Query: 600 TANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGT 659
           TAND+L S ++T   +    QS +  K VLPTGITV VKKIE  A  IK+VSEFI R+G 
Sbjct: 685 TANDILTSLSAT--TKPTDIQSPSVTKTVLPTGITVLVKKIELEARSIKVVSEFIMRLGN 742

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 719
            RHKNLIRLLGFC+N+H  YLLYDYLPNGNL+EK+  K DWAAK++ V+G+ARGLCFLHH
Sbjct: 743 ARHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKMEMKWDWAAKFRTVVGIARGLCFLHH 802

Query: 720 DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE 779
           +CYPAIPHGDL+ SNIVFDENMEPHLAEFGFK++++ + GS P    W    E+  A KE
Sbjct: 803 ECYPAIPHGDLRPSNIVFDENMEPHLAEFGFKHVSRWSKGSSPTTTKWET--EYNEATKE 860

Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV 839
           E+ MD+Y FGE+ILEILT  RL N+G+S+ +KP + LL E+YNEN   S+SSLQ EIKLV
Sbjct: 861 ELSMDIYKFGEMILEILTRERLANSGASIHSKPWEVLLREIYNENGASSASSLQ-EIKLV 919

Query: 840 LDVALLCTRSTPSDRPSMEEALKLLSGLK 868
           L+VA+LCTRS  SDRPSME+ LKLLSGLK
Sbjct: 920 LEVAMLCTRSRSSDRPSMEDVLKLLSGLK 948

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533009|ref|XP_003535061.1| PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Glycine max]

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/869 (68%), Positives = 694/869 (79%), Gaps = 7/869 (0%)

Query: 1   MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPG 60
           MK L G + GK   IF N L  LNLSHN FSG  P +IFNLTSL SLDISRNNFSG FPG
Sbjct: 87  MKKLGGVVSGKQFSIFTN-LTSLNLSHNFFSGNLPAKIFNLTSLTSLDISRNNFSGPFPG 145

Query: 61  GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
           GI  L+NL+VLDAFSNSFSGS+PAE SQL  LKVLNLAGSYF G IPS++GSFKSLEFLH
Sbjct: 146 GIPRLQNLIVLDAFSNSFSGSLPAEFSQLASLKVLNLAGSYFRGSIPSEYGSFKSLEFLH 205

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           LAGN L+  IP ELG L TVTHMEIGYN YQG IP ++GNMS++QYLDIAGANLSG IPK
Sbjct: 206 LAGNSLSGSIPPELGHLNTVTHMEIGYNLYQGFIPPEIGNMSQLQYLDIAGANLSGLIPK 265

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           +LSNL+ L+SLFLF NQL G +P E S +  L  LDLSDN  +G IPESF+DL+NLRLLS
Sbjct: 266 QLSNLSNLQSLFLFSNQLTGSIPSELSNIEPLTDLDLSDNFFTGSIPESFSDLENLRLLS 325

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           +MYN+MSGTVPE + QLPSLE L IWNN FSGSLP +LGRNSKL+WVD STN+  G+IPP
Sbjct: 326 VMYNDMSGTVPEGIAQLPSLETLLIWNNKFSGSLPRSLGRNSKLKWVDASTNDLVGNIPP 385

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
           DIC  G LFKLILFSN FTG LS S+SNCSSLVRLRLEDN FSGEI LKFS LPDI Y+D
Sbjct: 386 DICVSGELFKLILFSNKFTGGLS-SISNCSSLVRLRLEDNLFSGEITLKFSLLPDILYVD 444

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
           LSRN F GGIP+DI+QA++LEYFNVS N +LGG+IP+QTWSLP LQNFSAS+C I+ +LP
Sbjct: 445 LSRNNFVGGIPSDISQATQLEYFNVSYNQQLGGIIPSQTWSLPQLQNFSASSCGISSDLP 504

Query: 421 PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLD 480
           PF+SCKSISV++   NNLSGTIP SVS C  LE+I+L+NN L G IP+ LA +PVLGV+D
Sbjct: 505 PFESCKSISVVDLDSNNLSGTIPNSVSKCQTLEKINLSNNNLTGHIPDELATIPVLGVVD 564

Query: 481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQ 540
           LS+N+ +G IPAKFGSCS+L +LNVSFN+ISGSIP+GK  +LMG SA+ GN +LCGAPLQ
Sbjct: 565 LSNNNFNGTIPAKFGSCSNLQLLNVSFNNISGSIPAGKSFKLMGRSAFVGNSELCGAPLQ 624

Query: 541 PCHASVAILG-KGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQF 599
           PC  SV ILG K + K+  ++LL  G+++ +     G+ + RRG K  WKM+SF GLPQF
Sbjct: 625 PCPDSVGILGSKCSWKVTRIVLLSVGLLIVLLGLAFGMSYLRRGIKSQWKMVSFAGLPQF 684

Query: 600 TANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGT 659
           TANDVL S ++T   +    QS +  KAVLPTGITV VKKIEW     K+ SEFI R+G 
Sbjct: 685 TANDVLTSLSAT--TKPTEVQSPSVTKAVLPTGITVLVKKIEWEERSSKVASEFIVRLGN 742

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH 719
            RHKNL+RLLGFC+N H  YLLYDYLPNGNL+EK+  K DWAAK++ V+G+ARGLCFLHH
Sbjct: 743 ARHKNLVRLLGFCHNPHLVYLLYDYLPNGNLAEKMEMKWDWAAKFRTVVGIARGLCFLHH 802

Query: 720 DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE 779
           +CYPAIPHGDLK SNIVFDENMEPHLAEFGFK + + + GS P +  W E+G      KE
Sbjct: 803 ECYPAIPHGDLKPSNIVFDENMEPHLAEFGFKQVLRWSKGSSPTRNKW-ETGMTNKFTKE 861

Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV 839
           E+ MD+Y FGE+ILEI+T GRLTNAG+S+ +KP + LL E+YNENE  S+SSL  EIKLV
Sbjct: 862 ELCMDIYKFGEMILEIVTGGRLTNAGASIHSKPWEVLLREIYNENEGTSASSLH-EIKLV 920

Query: 840 LDVALLCTRSTPSDRPSMEEALKLLSGLK 868
           L+VA+LCT+S  SDRPSME+ LKLLSGLK
Sbjct: 921 LEVAMLCTQSRSSDRPSMEDVLKLLSGLK 949

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795941|ref|XP_002865855.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311690|gb|EFH42114.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/873 (59%), Positives = 639/873 (73%), Gaps = 79/873 (9%)

Query: 2   KGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFP- 59
           K L+G+L GK + + F EL++LN+S NSFSG+FP EIF NLT+L SLDISRNNFSG FP 
Sbjct: 85  KNLAGSLSGK-VFLVFTELLELNISDNSFSGEFPTEIFFNLTNLRSLDISRNNFSGRFPD 143

Query: 60  ---GGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSL 116
              GG  SL+NL++LDA SNSFSG +P  +SQLE+LKVLNLAGSYF+G IPSQ+GSFK+L
Sbjct: 144 GNGGGGSSLKNLILLDALSNSFSGPLPIHLSQLENLKVLNLAGSYFTGSIPSQYGSFKNL 203

Query: 117 EFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG 176
           EFLHL GNLL+  IP ELG L T+THMEIGYN Y+G IPWQ+G MSE++YLDIAGANLSG
Sbjct: 204 EFLHLGGNLLSGHIPQELGNLTTLTHMEIGYNSYEGVIPWQIGYMSELKYLDIAGANLSG 263

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
            +PK  SNLTKLESLFLFRN L+ ++PWE  ++T+L +LDLSDN +SG IPESF+ LKNL
Sbjct: 264 FLPKHFSNLTKLESLFLFRNHLSREIPWELGQITSLVNLDLSDNHISGTIPESFSGLKNL 323

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG 296
           RLL+LMYNEMSGT+P+ + QLPSL+ LFIWNNYFSGSLP++LG NSKLRWVDVSTN+F G
Sbjct: 324 RLLNLMYNEMSGTLPQVIAQLPSLDTLFIWNNYFSGSLPKSLGMNSKLRWVDVSTNSFEG 383

Query: 297 SIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDI 356
            IP  ICSGGVLFK+ILFSNNFTG+LSPSLSNCS+LVR+RLEDNSFSG IP  FS++PDI
Sbjct: 384 EIPQGICSGGVLFKVILFSNNFTGTLSPSLSNCSTLVRIRLEDNSFSGVIPFSFSEIPDI 443

Query: 357 NYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT 416
           +YIDLSRN  TGGIP DI++A+KL+YFN+SNNP+LGG +P Q WS P LQNFSAS+C+I+
Sbjct: 444 SYIDLSRNKLTGGIPLDISKATKLDYFNISNNPELGGKLPPQIWSAPRLQNFSASSCSIS 503

Query: 417 GNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVL 476
           G+LP F+SCK+I+VIE   NN+SG +  +VS C  LE++DL                   
Sbjct: 504 GSLPEFESCKAITVIELSNNNISGMLTPTVSTCGSLEKMDL------------------- 544

Query: 477 GVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCG 536
                SHN+LSG I                        PS KV + MG  AY GN  LCG
Sbjct: 545 -----SHNNLSGSI------------------------PSDKVFQSMGKHAYEGNANLCG 575

Query: 537 APLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGL 596
            PL+ C A        + KL  VL+ C   ++ +  A L +++ R+  +G WKM+SF GL
Sbjct: 576 LPLKSCSA------YSSKKLVSVLVACLVSILLMVVAALALYYIRQRSQGQWKMVSFAGL 629

Query: 597 PQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITR 656
           P FTA+DVLRSF S E  EA  P S +  KAVLPTGITV V+KIE    +  +V  F+T+
Sbjct: 630 PHFTADDVLRSFGSPEPSEAV-PASVS--KAVLPTGITVIVRKIELQDKKKSVVLNFLTQ 686

Query: 657 IGTVRHKNLIRLLGFCYNRHQAYLLYD-YLPNGNLSEKIRT-KRDWAAKYKIVLGVARGL 714
           +G  RH NL+RLLGFCYN H  Y+LYD  L  G L+EK+RT K+DWA K +I+ GVA+GL
Sbjct: 687 MGNARHVNLVRLLGFCYNNHLVYVLYDNNLHTGTLAEKMRTKKKDWATKKRIITGVAKGL 746

Query: 715 CFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEF 773
           CFLHH+CYPAIPHGD+K+SNI+FD++ +EP+L EFGFKY+  L             + + 
Sbjct: 747 CFLHHECYPAIPHGDVKSSNILFDDDKIEPYLGEFGFKYMLHL------------NTDQM 794

Query: 774 YNAMKEEMYMDVYGFGEIILEILTNGRLTNAGS-SLQNKPIDGLLGEMYNENEVGSSSSL 832
            + ++ E   D+Y FGE+ILEILTNG+L NAG   +QNKP D LL E+Y ENEVGSS   
Sbjct: 795 NDVIRAEQQKDIYNFGELILEILTNGKLMNAGGLMIQNKPKDVLLREVYTENEVGSSDFK 854

Query: 833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
           Q E+K V++VALLC RS  SDRP ME+AL+LLS
Sbjct: 855 QGEVKRVVEVALLCIRSDQSDRPCMEDALRLLS 887

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242059|ref|NP_199948.1| putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana] gi|9759281|dbj|BAB09746.1| receptor protein kinase-like [Arabidopsis thaliana] gi|224589717|gb|ACN59390.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332008686|gb|AED96069.1| putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/873 (58%), Positives = 628/873 (71%), Gaps = 79/873 (9%)

Query: 2   KGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFP- 59
           K L+G+L GK   +F  EL++LN+S NSFSG+FP EIF N+T+L SLDISRNNFSG FP 
Sbjct: 86  KNLAGSLSGKEFLVF-TELLELNISDNSFSGEFPAEIFFNMTNLRSLDISRNNFSGRFPD 144

Query: 60  --GGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLE 117
             GG  SL+NL+ LDA SNSFSG +P  +SQLE+LKVLNLAGSYF+G IPSQ+GSFK+LE
Sbjct: 145 GNGGDSSLKNLIFLDALSNSFSGPLPIHLSQLENLKVLNLAGSYFTGSIPSQYGSFKNLE 204

Query: 118 FLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS 177
           FLHL GNLL+  IP ELG L T+THMEIGYN Y+G IPW++G MSE++YLDIAGANLSG 
Sbjct: 205 FLHLGGNLLSGHIPQELGNLTTLTHMEIGYNSYEGVIPWEIGYMSELKYLDIAGANLSGF 264

Query: 178 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLR 237
           +PK  SNLTKLESLFLFRN L+ ++PWE   +T+L +LDLSDN +SG IPESF+ LKNLR
Sbjct: 265 LPKHFSNLTKLESLFLFRNHLSREIPWELGEITSLVNLDLSDNHISGTIPESFSGLKNLR 324

Query: 238 LLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGS 297
           LL+LM+NEMSGT+PE + QLPSL+ LFIWNNYFSGSLP++LG NSKLRWVDVSTN+F G 
Sbjct: 325 LLNLMFNEMSGTLPEVIAQLPSLDTLFIWNNYFSGSLPKSLGMNSKLRWVDVSTNSFQGE 384

Query: 298 IPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDIN 357
           IP  ICS GVLFKLILFSNNFTG+LSPSLSNCS+LVR+RLEDNSFSG IP  FS++PDI+
Sbjct: 385 IPQGICSRGVLFKLILFSNNFTGTLSPSLSNCSTLVRIRLEDNSFSGVIPFSFSEIPDIS 444

Query: 358 YIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG 417
           YIDLSRN  TGGIP DI++A+KL+YFN+SNNP+LGG +P   WS PSLQNFSAS+C+I+G
Sbjct: 445 YIDLSRNKLTGGIPLDISKATKLDYFNISNNPELGGKLPPHIWSAPSLQNFSASSCSISG 504

Query: 418 NLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLG 477
            LP F+SCKSI+VIE   NN+SG +  +VS C  L+++DL++N L G+IP          
Sbjct: 505 GLPVFESCKSITVIELSNNNISGMLTPTVSTCGSLKKMDLSHNNLRGAIP---------- 554

Query: 478 VLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGA 537
                                                 S KV + MG  AY  N  LCG 
Sbjct: 555 --------------------------------------SDKVFQSMGKHAYESNANLCGL 576

Query: 538 PLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLP 597
           PL+ C A        + KL  VL+ C   ++ +  A L +++ R+  +G WKM+SF GLP
Sbjct: 577 PLKSCSA------YSSRKLVSVLVACLVSILLMVVAALALYYIRQRSQGQWKMVSFAGLP 630

Query: 598 QFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRI 657
            FTA+DVLRSF S E  EA  P S +  KAVLPTGITV V+KIE    +  +V   +T++
Sbjct: 631 HFTADDVLRSFGSPEPSEAV-PASVS--KAVLPTGITVIVRKIELHDKKKSVVLNVLTQM 687

Query: 658 GTVRHKNLIRLLGFCYNRHQAYLLYD-YLPNG-NLSEKIRT-KRDWAAKYKIVLGVARGL 714
           G  RH NL+RLLGFCYN H  Y+LYD  L  G  L+EK++T K+DW  K +I+ GVA+GL
Sbjct: 688 GNARHVNLVRLLGFCYNNHLVYVLYDNNLHTGTTLAEKMKTKKKDWQTKKRIITGVAKGL 747

Query: 715 CFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEF 773
           CFLHH+C PAIPHGD+K+SNI+FD++ +EP L EFGFKY+  L             + + 
Sbjct: 748 CFLHHECLPAIPHGDVKSSNILFDDDKIEPCLGEFGFKYMLHL------------NTDQM 795

Query: 774 YNAMKEEMYMDVYGFGEIILEILTNGRLTNAGS-SLQNKPIDGLLGEMYNENEVGSSSSL 832
            + ++ E   DVY FG++ILEILTNG+L NAG   +QNKP DGLL E+Y ENEV SS   
Sbjct: 796 NDVIRVEKQKDVYNFGQLILEILTNGKLMNAGGLMIQNKPKDGLLREVYTENEVSSSDFK 855

Query: 833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
           Q E+K V++VALLC RS  SDRP ME+AL+LLS
Sbjct: 856 QGEVKRVVEVALLCIRSDQSDRPCMEDALRLLS 888

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448387|ref|XP_003594469.1| Receptor-like kinase [Medicago truncatula] gi|355483517|gb|AES64720.1| Receptor-like kinase [Medicago truncatula]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/892 (53%), Positives = 601/892 (67%), Gaps = 86/892 (9%)

Query: 1   MKGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPG 60
           MK L G L GK L +F  E++D NLS+N FSG+ P EIFNLT+L SLDI  NNFSG FP 
Sbjct: 87  MKKLGGVLSGKQLSVF-TEVIDFNLSNNLFSGKLPPEIFNLTNLKSLDIDTNNFSGQFPK 145

Query: 61  GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
           GI  L++L+V DA+ N+FSG +PAE S+LE+LK+LNL G+ FSG IPS++GSF+SLE L 
Sbjct: 146 GISKLKSLVVFDAWENNFSGQLPAEFSELENLKILNLYGNSFSGSIPSEYGSFRSLESLL 205

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           LA N L   IP ELG LKTVT MEIG N YQG IP QLGNMS++Q L+IA ANLSGSIPK
Sbjct: 206 LAANSLTGSIPPELGNLKTVTSMEIGSNSYQGFIPPQLGNMSQLQNLEIADANLSGSIPK 265

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           EL +LT L+ LFL  NQL G +P EFS++  L  LDLSDN LSG IPESF++LK+L +LS
Sbjct: 266 ELFSLTNLQILFLSINQLTGSIPSEFSKIKLLTFLDLSDNLLSGSIPESFSELKSLIILS 325

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           L  N+MSG VPE + +LPSLE L I +N FSGSLP++LG+NSKL+ VDVS NNFNGSIPP
Sbjct: 326 LGSNDMSGIVPEGIAELPSLEFLLISHNRFSGSLPKSLGKNSKLKSVDVSVNNFNGSIPP 385

Query: 301 DICSG------GVLFKLILFSN------------NFT-------GSLSPSLSNCSSLVRL 335
            IC         V + + L  N            NF+       G+L PS  +C S+  +
Sbjct: 386 SICQATQLSYFSVSYNMQLGGNIPSQIWSMPQLQNFSAYSCGILGNL-PSFESCKSISTI 444

Query: 336 RLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMI 395
           RL  N+ SG IP   S+   +  I+LS N  TG IP ++     LE  ++SNN KL G+I
Sbjct: 445 RLGRNNLSGTIPKSVSKCQALMIIELSDNNLTGQIPEELADIPILESVDLSNN-KLNGLI 503

Query: 396 PAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERI 455
           P +                       F S  S+ ++    NN+SG+IPE +++   LE +
Sbjct: 504 PEK-----------------------FGSSSSLKLLNVSFNNISGSIPEELADIPILESV 540

Query: 456 DLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIP 515
           DL+NNKL G IPE                        KFGS SS+ +LNVSFN+ISGSIP
Sbjct: 541 DLSNNKLNGLIPE------------------------KFGSSSSIKLLNVSFNNISGSIP 576

Query: 516 SGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGK-GTGKLKFVLLLCAGIVMFIAAAL 574
            GK  +LM +SA+ GN +LCG PL+PC  SV ILG   T KL  +LLL  G+++ +    
Sbjct: 577 KGKSFKLMDTSAFVGNSELCGVPLRPCIKSVGILGSTNTWKLTHILLLSVGLLIILMVLG 636

Query: 575 LGIFFFRRGGKGHWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGIT 634
            GI  F++G +  WKMISF+GLPQFT NDVL SFN    E           KAVLPTGIT
Sbjct: 637 FGILHFKKGFESRWKMISFVGLPQFTPNDVLTSFNVVAAEHTEV------TKAVLPTGIT 690

Query: 635 VSVKKIEWGATRIKIVSEFITRIG-TVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEK 693
           V VKKIEW    IK+VSEFI R+G   RHKNLIRLLGFCYN+   YLLYDYLPNGNL+EK
Sbjct: 691 VLVKKIEWETRSIKLVSEFIMRLGNAARHKNLIRLLGFCYNQQLVYLLYDYLPNGNLAEK 750

Query: 694 IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL 753
           I  + DW+ K++ ++G+ARGLCFLHH+CYPAIPHGDL ++N+VFDE+MEPHLAEFGFK++
Sbjct: 751 IGMEWDWSGKFRTIVGIARGLCFLHHECYPAIPHGDLNSTNVVFDEDMEPHLAEFGFKHV 810

Query: 754 TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI 813
            +L+ GS P      +  E+  +M+EE+  DVY FG++ILEILT  RLT+A +++ +K  
Sbjct: 811 IELSKGSSPTTTK--QETEYNESMEEELGSDVYNFGKMILEILTGRRLTSAAANIHSKSH 868

Query: 814 DGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
           + LL E+YN+NEV S+SS++ EIKLVL+VA+LCTRS  SDRPSME+ALKLLS
Sbjct: 869 ETLLREVYNDNEVTSASSME-EIKLVLEVAMLCTRSRSSDRPSMEDALKLLS 919

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	872
TAIR|locus:2163665	895	MOL1 "MORE LATERAL GROWTH1" [A	0.533	0.519	0.670	2.8e-169
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.612	0.518	0.405	1.4e-144
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.979	0.851	0.351	7.7e-135
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.885	0.770	0.361	1.5e-131
TAIR|locus:2204350	980	CLV1 "AT1G75820" [Arabidopsis	0.881	0.784	0.360	1.9e-129
TAIR|locus:2161158	1041	PXY "PHLOEM INTERCALATED WITH	0.618	0.517	0.454	3.7e-126
UNIPROTKB|Q5Z9N5	994	P0481E08.42 "Os06g0717200 prot	0.840	0.737	0.352	4e-122
TAIR|locus:2032553	996	HSL1 "HAESA-like 1" [Arabidops	0.786	0.688	0.321	1.5e-121
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.777	0.678	0.331	7.7e-116
TAIR|locus:2169975	993	HSL2 "HAESA-like 2" [Arabidops	0.909	0.798	0.328	5.5e-113

TAIR|locus:2163665 MOL1 "MORE LATERAL GROWTH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1646 (584.5 bits), Expect = 2.8e-169, P = 2.8e-169
 Identities = 315/470 (67%), Positives = 381/470 (81%)

Query:     2 KGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFP- 59
             K L+G+L GK   +F  EL++LN+S NSFSG+FP EIF N+T+L SLDISRNNFSG FP 
Sbjct:    86 KNLAGSLSGKEFLVF-TELLELNISDNSFSGEFPAEIFFNMTNLRSLDISRNNFSGRFPD 144

Query:    60 --GGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLE 117
               GG  SL+NL+ LDA SNSFSG +P  +SQLE+LKVLNLAGSYF+G IPSQ+GSFK+LE
Sbjct:   145 GNGGDSSLKNLIFLDALSNSFSGPLPIHLSQLENLKVLNLAGSYFTGSIPSQYGSFKNLE 204

Query:   118 FLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS 177
             FLHL GNLL+  IP ELG L T+THMEIGYN Y+G IPW++G MSE++YLDIAGANLSG 
Sbjct:   205 FLHLGGNLLSGHIPQELGNLTTLTHMEIGYNSYEGVIPWEIGYMSELKYLDIAGANLSGF 264

Query:   178 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLR 237
             +PK  SNLTKLESLFLFRN L+ ++PWE   +T+L +LDLSDN +SG IPESF+ LKNLR
Sbjct:   265 LPKHFSNLTKLESLFLFRNHLSREIPWELGEITSLVNLDLSDNHISGTIPESFSGLKNLR 324

Query:   238 LLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGS 297
             LL+LM+NEMSGT+PE + QLPSL+ LFIWNNYFSGSLP++LG NSKLRWVDVSTN+F G 
Sbjct:   325 LLNLMFNEMSGTLPEVIAQLPSLDTLFIWNNYFSGSLPKSLGMNSKLRWVDVSTNSFQGE 384

Query:   298 IPPDICSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDIN 357
             IP  ICS GVLFKLILFSNNFTG            VR+RLEDNSFSG IP  FS++PDI+
Sbjct:   385 IPQGICSRGVLFKLILFSNNFTGTLSPSLSNCSTLVRIRLEDNSFSGVIPFSFSEIPDIS 444

Query:   358 YIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG 417
             YIDLSRN  TGGIP DI++A+KL+YFN+SNNP+LGG +P   WS PSLQNFSAS+C+I+G
Sbjct:   445 YIDLSRNKLTGGIPLDISKATKLDYFNISNNPELGGKLPPHIWSAPSLQNFSASSCSISG 504

Query:   418 NLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIP 467
              LP F+SCKSI+VIE   NN+SG +  +VS C  L+++DL++N L G+IP
Sbjct:   505 GLPVFESCKSITVIELSNNNISGMLTPTVSTCGSLKKMDLSHNNLRGAIP 554

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:2000604 "negative regulation of secondary growth" evidence=IMP

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
 Identities = 218/537 (40%), Positives = 335/537 (62%)

Query:    17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
             F  L  L+LS+N+F    P  + NLTSL  +D+S N+F G FP G+     L  ++A SN
Sbjct:   100 FPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFGTFPYGLGMATGLTHVNASSN 159

Query:    77 SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             +FSG +P ++     L+VL+  G YF G +PS F + K+L+FL L+GN    ++P  +G 
Sbjct:   160 NFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGE 219

Query:   137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
             L ++  + +GYN + G IP + G ++ +QYLD+A  NL+G IP  L  L +L +++L++N
Sbjct:   220 LSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQN 279

Query:   197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
             +L G++P E   +T+L  LDLSDN+++G IP    +LKNL+LL+LM N+++G +P  + +
Sbjct:   280 RLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAE 339

Query:   257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSN 316
             LP+LE+L +W N   GSLP +LG+NS L+W+DVS+N  +G IP  +C    L KLILF+N
Sbjct:   340 LPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLILFNN 399

Query:   317 NFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQ 376
             +F+G            VR+R++ N  SG IP     LP + +++L++N  TG IP DI  
Sbjct:   400 SFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLPMLQHLELAKNNLTGKIPDDIAL 459

Query:   377 ASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP-PFKSCKSISVIESHM 435
             ++ L + ++S N  L  +  +  +S P+LQ F AS  N  G +P   +   S+SV++   
Sbjct:   460 STSLSFIDISFN-HLSSL-SSSIFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDLSF 517

Query:   436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
             N+ SG IPE +++  +L  ++L +N+L+G IP+ LA + +L VLDLS+NSL+G IPA  G
Sbjct:   518 NHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLG 577

Query:   496 SCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKG 552
             +  +L +LNVSFN + G IPS  +   +      GN  LCG  L PC  S+A+  KG
Sbjct:   578 ASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCGGVLPPCSKSLALSAKG 634

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1321 (470.1 bits), Expect = 7.7e-135, P = 7.7e-135
 Identities = 314/894 (35%), Positives = 475/894 (53%)

Query:     4 LSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQ 63
             LSG L   P       L +L+L+ N  SG  P EI +L+ L  L++S N F+G FP  I 
Sbjct:    81 LSGTL--SPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEIS 138

Query:    64 S-LRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLA 122
             S L NL VLD ++N+ +G +P  ++ L  L+ L+L G+YF+G IP  +GS+  +E+L ++
Sbjct:   139 SGLVNLRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVS 198

Query:   123 GNLLNDQIPAELGMLKTVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 181
             GN L  +IP E+G L T+  + IGY N ++  +P ++GN+SE+   D A   L+G IP E
Sbjct:   199 GNELVGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPE 258

Query:   182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
             +  L KL++LFL  N  +G + WE   +++LKS+DLS+N  +G IP SFA+LKNL LL+L
Sbjct:   259 IGKLQKLDTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNL 318

Query:   242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
               N++ G +PE +  LP LE+L +W N F+GS+P+ LG N KL  VD+S+N   G++PP+
Sbjct:   319 FRNKLHGEIPEFIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLPPN 378

Query:   302 ICSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDL 361
             +CSG  L  LI   N   G             R+R+ +N  +G IP     LP +  ++L
Sbjct:   379 MCSGNKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVEL 438

Query:   362 SRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP 421
               N  +G +P     +  L   ++SNN +L G +P    +   +Q          G +P 
Sbjct:   439 QDNYLSGELPVAGGVSVNLGQISLSNN-QLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPS 497

Query:   422 -FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLD 480
                  + +S I+   N  SG I   +S C  L  +DL+ N+L G IP  +  + +L  L+
Sbjct:   498 EVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLN 557

Query:   481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQ 540
             LS N L G IP    S  SLT L+ S+N++SG +P          +++ GNP LCG  L 
Sbjct:   558 LSRNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLG 617

Query:   541 PCHASVAILG-----KGTGKLKFVLLLCAGIVMXXXXXXXXXXXXRRGGKGH-----WKM 590
             PC   VA  G     KG       LLL  G+++             R  K       W++
Sbjct:   618 PCKDGVAKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVVAIIKARSLKKASESRAWRL 677

Query:   591 ISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGC--KAVLPTGITVSVKKI---EWGAT 645
              +F  L  FT +DVL S      E+    +  AG   K V+P G  V+VK++     G++
Sbjct:   678 TAFQRL-DFTCDDVLDSLK----EDNIIGKGGAGIVYKGVMPNGDLVAVKRLAAMSRGSS 732

Query:   646 RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRD----WA 701
                  +  I  +G +RH++++RLLGFC N     L+Y+Y+PNG+L E +  K+     W 
Sbjct:   733 HDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWD 792

Query:   702 AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGS 760
              +YKI L  A+GLC+LHHDC P I H D+K++NI+ D N E H+A+FG  K+L       
Sbjct:   793 TRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSE 852

Query:   761 FPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEILTN----GRLTNAGSSLQ--NK 811
               + IA +    + E+   +K +   DVY FG ++LE++T     G   +    +Q   K
Sbjct:   853 CMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRK 912

Query:   812 PIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
               D     +    +   SS    E+  V  VA+LC      +RP+M E +++L+
Sbjct:   913 MTDSNKDSVLKVLDPRLSSIPIHEVTHVFYVAMLCVEEQAVERPTMREVVQILT 966

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 289/800 (36%), Positives = 442/800 (55%)

Query:    20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQS-LRNLLVLDAFSNSF 78
             L +L+L+ N  SG  P +I NL  L  L++S N F+G FP  + S L NL VLD ++N+ 
Sbjct:    95 LQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNL 154

Query:    79 SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
             +G +P  ++ L  L+ L+L G+YFSG IP+ +G++  LE+L ++GN L  +IP E+G L 
Sbjct:   155 TGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLT 214

Query:   139 TVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
             T+  + IGY N ++  +P ++GN+SE+   D A   L+G IP E+  L KL++LFL  N 
Sbjct:   215 TLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNA 274

Query:   198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
               G +  E   +++LKS+DLS+N  +G IP SF+ LKNL LL+L  N++ G +PE + ++
Sbjct:   275 FTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEM 334

Query:   258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNN 317
             P LE+L +W N F+GS+P+ LG N +L  +D+S+N   G++PP++CSG  L  LI   N 
Sbjct:   335 PELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNF 394

Query:   318 FTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQA 377
               G             R+R+ +N  +G IP +   LP ++ ++L  N  TG +P      
Sbjct:   395 LFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGV 454

Query:   378 S-KLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHM 435
             S  L   ++SNN +L G +PA   +L  +Q         +G++PP     + +S ++   
Sbjct:   455 SGDLGQISLSNN-QLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSH 513

Query:   436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
             N  SG I   +S C  L  +DL+ N+L G IP  L  + +L  L+LS N L G IP    
Sbjct:   514 NLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIA 573

Query:   496 SCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPC----HASVAILGK 551
             S  SLT ++ S+N++SG +PS         +++ GN  LCG  L PC    H S      
Sbjct:   574 SMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCGPYLGPCGKGTHQSHVKPLS 633

Query:   552 GTGKLKFVL-LLCAGIVMXXXXXXXXXXXXRRGGKGHWKMISFLGLPQFTANDVLRSFNS 610
              T KL  VL LL   +V                    W++ +F  L  FT +DVL S   
Sbjct:   634 ATTKLLLVLGLLFCSMVFAIVAIIKARSLRNASEAKAWRLTAFQRL-DFTCDDVLDSLK- 691

Query:   611 TECEEAARPQSAAGC--KAVLPTGITVSVKKI---EWGATRIKIVSEFITRIGTVRHKNL 665
                E+    +  AG   K  +P G  V+VK++     G++     +  I  +G +RH+++
Sbjct:   692 ---EDNIIGKGGAGIVYKGTMPKGDLVAVKRLATMSHGSSHDHGFNAEIQTLGRIRHRHI 748

Query:   666 IRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRD----WAAKYKIVLGVARGLCFLHHDC 721
             +RLLGFC N     L+Y+Y+PNG+L E +  K+     W  +YKI L  A+GLC+LHHDC
Sbjct:   749 VRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWNTRYKIALEAAKGLCYLHHDC 808

Query:   722 YPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---SGEFYNAM 777
              P I H D+K++NI+ D N E H+A+FG  K+L         + IA +    + E+   +
Sbjct:   809 SPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTL 868

Query:   778 KEEMYMDVYGFGEIILEILT 797
             K +   DVY FG ++LE++T
Sbjct:   869 KVDEKSDVYSFGVVLLELIT 888

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2204350 CLV1 "AT1G75820" [Arabidopsis thaliana (taxid:3702)]

 Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
 Identities = 289/801 (36%), Positives = 453/801 (56%)

Query:    20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRN-NFSGHFPGGI-QSLRNLLVLDAFSNS 77
             LV+L L+ N+F+G+ P+E+ +LTSL  L+IS N N +G FPG I +++ +L VLD ++N+
Sbjct:    96 LVNLTLAANNFTGELPLEMKSLTSLKVLNISNNGNLTGTFPGEILKAMVDLEVLDTYNNN 155

Query:    78 FSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 137
             F+G +P E+S+L+ LK L+  G++FSG IP  +G  +SLE+L L G  L+ + PA L  L
Sbjct:   156 FNGKLPPEMSELKKLKYLSFGGNFFSGEIPESYGDIQSLEYLGLNGAGLSGKSPAFLSRL 215

Query:   138 KTVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
             K +  M IGY N Y G +P + G +++++ LD+A   L+G IP  LSNL  L +LFL  N
Sbjct:   216 KNLREMYIGYYNSYTGGVPPEFGGLTKLEILDMASCTLTGEIPTSLSNLKHLHTLFLHIN 275

Query:   197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
              L G +P E S + +LKSLDLS N+L+G IP+SF +L N+ L++L  N + G +PE++ +
Sbjct:   276 NLTGHIPPELSGLVSLKSLDLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEAIGE 335

Query:   257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSN 316
             LP LE+  +W N F+  LP NLGRN  L  +DVS N+  G IP D+C G  L  LIL +N
Sbjct:   336 LPKLEVFEVWENNFTLQLPANLGRNGNLIKLDVSDNHLTGLIPKDLCRGEKLEMLILSNN 395

Query:   317 NFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQ 376
              F G             ++R+  N  +G +P     LP +  I+L+ N F+G +P  ++ 
Sbjct:   396 FFFGPIPEELGKCKSLTKIRIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS- 454

Query:   377 ASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP-PFKSCKSISVIESHM 435
                L+   +SNN    G IP    + P+LQ          GN+P      K +S I +  
Sbjct:   455 GDVLDQIYLSNN-WFSGEIPPAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSA 513

Query:   436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
             NN++G IP+S+S C  L  +DL+ N++ G IP+ +  +  LG L++S N L+G IP   G
Sbjct:   514 NNITGGIPDSISRCSTLISVDLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIPTGIG 573

Query:   496 SCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLC-----GAPLQPCHASVAILG 550
             + +SLT L++SFND+SG +P G    +   +++AGN  LC       P +P   S     
Sbjct:   574 NMTSLTTLDLSFNDLSGRVPLGGQFLVFNETSFAGNTYLCLPHRVSCPTRPGQTSDHNHT 633

Query:   551 KGTGKLKFVLLLCAGIV-MXXXXXXXXXXXXRRGGKG-HWKMISFLGLPQFTANDVLRSF 608
                   + V+ + A I  +            ++  K   WK+ +F  L  F + DVL   
Sbjct:   634 ALFSPSRIVITVIAAITGLILISVAIRQMNKKKNQKSLAWKLTAFQKL-DFKSEDVLECL 692

Query:   609 NSTECEEAARPQSAAGC--KAVLPTGITVSVKKIEW---GATRIKIVSEFITRIGTVRHK 663
                  EE    +  AG   +  +P  + V++K++     G +     +E  T +G +RH+
Sbjct:   693 K----EENIIGKGGAGIVYRGSMPNNVDVAIKRLVGRGTGRSDHGFTAEIQT-LGRIRHR 747

Query:   664 NLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHH 719
             +++RLLG+  N+    LLY+Y+PNG+L E +   +     W  ++++ +  A+GLC+LHH
Sbjct:   748 HIVRLLGYVANKDTNLLLYEYMPNGSLGELLHGSKGGHLQWETRHRVAVEAAKGLCYLHH 807

Query:   720 DCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---SGEFYN 775
             DC P I H D+K++NI+ D + E H+A+FG  K+L   A     + IA +    + E+  
Sbjct:   808 DCSPLILHRDVKSNNILLDSDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAY 867

Query:   776 AMKEEMYMDVYGFGEIILEIL 796
              +K +   DVY FG ++LE++
Sbjct:   868 TLKVDEKSDVYSFGVVLLELI 888

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007172 "signal complex assembly" evidence=IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0030154 "cell differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2161158 PXY "PHLOEM INTERCALATED WITH XYLEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
 Identities = 247/544 (45%), Positives = 346/544 (63%)

Query:     2 KGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGG 61
             + LSG +P + +R + + L+ LNLS NS  G FP  IF+LT L +LDISRN+F   FP G
Sbjct:    91 RNLSGRIPIQ-IR-YLSSLLYLNLSGNSLEGSFPTSIFDLTKLTTLDISRNSFDSSFPPG 148

Query:    62 IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL 121
             I  L+ L V +AFSN+F G +P+++S+L  L+ LN  GSYF G IP+ +G  + L+F+HL
Sbjct:   149 ISKLKFLKVFNAFSNNFEGLLPSDVSRLRFLEELNFGGSYFEGEIPAAYGGLQRLKFIHL 208

Query:   122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 181
             AGN+L  ++P  LG+L  + HMEIGYN + GNIP +   +S ++Y D++  +LSGS+P+E
Sbjct:   209 AGNVLGGKLPPRLGLLTELQHMEIGYNHFNGNIPSEFALLSNLKYFDVSNCSLSGSLPQE 268

Query:   182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
             L NL+ LE+LFLF+N   G++P  +S + +LK LD S N+LSG IP  F+ LKNL  LSL
Sbjct:   269 LGNLSNLETLFLFQNGFTGEIPESYSNLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSL 328

Query:   242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
             + N +SG VPE + +LP L  LF+WNN F+G LP  LG N KL  +DVS N+F G+IP  
Sbjct:   329 ISNNLSGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSS 388

Query:   302 ICSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDL 361
             +C G  L+KLILFSN F G             R R ++N  +G IP+ F  L ++ ++DL
Sbjct:   389 LCHGNKLYKLILFSNMFEGELPKSLTRCESLWRFRSQNNRLNGTIPIGFGSLRNLTFVDL 448

Query:   362 SRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP 421
             S N FT  IP D   A  L+Y N+S N      +P   W  P+LQ FSAS  N+ G +P 
Sbjct:   449 SNNRFTDQIPADFATAPVLQYLNLSTN-FFHRKLPENIWKAPNLQIFSASFSNLIGEIPN 507

Query:   422 FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDL 481
             +  CKS   IE   N+L+GTIP  + +C +L  ++L+ N L G IP  ++ LP +  +DL
Sbjct:   508 YVGCKSFYRIELQGNSLNGTIPWDIGHCEKLLCLNLSQNHLNGIIPWEISTLPSIADVDL 567

Query:   482 SHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPL-Q 540
             SHN L+G IP+ FGS  ++T  NVS+N + G IPSG    L   S ++ N  LCG  + +
Sbjct:   568 SHNLLTGTIPSDFGSSKTITTFNVSYNQLIGPIPSGSFAHL-NPSFFSSNEGLCGDLVGK 626

Query:   541 PCHA 544
             PC++
Sbjct:   627 PCNS 630

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

UNIPROTKB|Q5Z9N5 P0481E08.42 "Os06g0717200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 274/778 (35%), Positives = 428/778 (55%)

Query:     5 SGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFP----G 60
             SG LP  P     + L +L ++     G  P+E+  L SL  L++S NN SGHFP    G
Sbjct:    83 SGYLP--PEIALLDSLANLTIAACCLPGHVPLELPTLPSLRHLNLSNNNLSGHFPVPDSG 140

Query:    61 GIQS--LRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF 118
             G  S    +L ++DA++N+ SG +P   +    L+ L+L G+YF+G IP  +G   +LE+
Sbjct:   141 GGASPYFPSLELIDAYNNNLSGLLPPFSASHARLRYLHLGGNYFTGAIPDSYGDLAALEY 200

Query:   119 LHLAGNLLNDQIPAELGMLKTVTHMEIGY-NFYQGNIPWQLGNMSEVQYLDIAGANLSGS 177
             L L GN L+  +P  L  L  +  M IGY N Y G +P + G++  +  LD++  NL+G 
Sbjct:   201 LGLNGNTLSGHVPVSLSRLTRLREMYIGYYNQYDGGVPPEFGDLGALLRLDMSSCNLTGP 260

Query:   178 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLR 237
             +P EL  L +L++LFL  N+L+G++P +   +++L SLDLS N L+G IP S A+L NL+
Sbjct:   261 VPPELGRLQRLDTLFLQWNRLSGEIPPQLGDLSSLASLDLSVNDLAGEIPPSLANLSNLK 320

Query:   238 LLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGS 297
             LL+L  N + G++P+ +     LE+L +W+N  +G++P  LG+N +L+ +D++TN+  G 
Sbjct:   321 LLNLFRNHLRGSIPDFVAGFAQLEVLQLWDNNLTGNIPAGLGKNGRLKTLDLATNHLTGP 380

Query:   298 IPPDICSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDIN 357
             IP D+C+G  L  L+L  N   G             R+RL  N  +G +P     LP  N
Sbjct:   381 IPADLCAGRRLEMLVLMENGLFGPIPDSLGDCKTLTRVRLAKNFLTGPVPAGLFNLPQAN 440

Query:   358 YIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG 417
              ++L+ N  TG +P D+    K+    + NN  +GG IP    +LP+LQ  S  + N +G
Sbjct:   441 MVELTDNLLTGELP-DVIGGDKIGMLLLGNNG-IGGRIPPAIGNLPALQTLSLESNNFSG 498

Query:   418 NLPP-FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVL 476
              LPP   + K++S +    N L+G IP+ +  C  L  +DL+ N   G IPE +  L +L
Sbjct:   499 ALPPEIGNLKNLSRLNVSGNALTGAIPDELIRCASLAAVDLSRNGFSGEIPESITSLKIL 558

Query:   477 GVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIP-SGKVLRLMGSSAYAGNPKLC 535
               L++S N L+G++P +  + +SLT L+VS+N +SG +P  G+ L +   S++ GNP LC
Sbjct:   559 CTLNVSRNRLTGELPPEMSNMTSLTTLDVSYNSLSGPVPMQGQFL-VFNESSFVGNPGLC 617

Query:   536 GAPL-QPCHASVAILGKGTG---KLKF-VLLLCAGIVMXXXXXXXXXXXXRRG------- 583
             G P+   C  S+A  G G G   +L++    +   +V             R+G       
Sbjct:   618 GGPVADACPPSMAGGGGGAGSQLRLRWDSKKMLVALVAAFAAVAVAFLGARKGCSAWRSA 677

Query:   584 ---GKGHWKMISFLGLPQFTANDVLRSFNSTECEEAARPQSAAGCKAV---LPTGITVSV 637
                  G WKM +F  L +F+A DV+      EC +        G   V   +  G  +++
Sbjct:   678 ARRRSGAWKMTAFQKL-EFSAEDVV------ECVKEDNIIGKGGAGIVYHGVTRGAELAI 730

Query:   638 KKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR 695
             K++    G    +  S  +T +G +RH+N++RLLGF  NR    LLY+Y+PNG+L E + 
Sbjct:   731 KRLVGRGGGEHDRGFSAEVTTLGRIRHRNIVRLLGFVSNRETNLLLYEYMPNGSLGEMLH 790

Query:   696 TKRD----WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 749
               +     W A+ ++    A GLC+LHHDC P I H D+K++NI+ D   E H+A+FG
Sbjct:   791 GGKGGHLGWEARARVAAEAACGLCYLHHDCAPRIIHRDVKSNNILLDSAFEAHVADFG 848

GO:0010080 "regulation of floral meristem growth" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
 Identities = 231/718 (32%), Positives = 370/718 (51%)

Query:     4 LSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQ 63
             L+G  P    R+  + L  L+L +NS +   P+ I    SL +LD+S+N  +G  P  + 
Sbjct:    72 LAGPFPSVICRL--SNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLA 129

Query:    64 SLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG 123
              +  L+ LD   N+FSG +PA   + E+L+VL+L  +   G IP   G+  +L+ L+L+ 
Sbjct:   130 DIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSY 189

Query:   124 NLLN-DQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL 182
             N  +  +IP E G L  +  M +      G IP  LG +S++  LD+A  +L G IP  L
Sbjct:   190 NPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSL 249

Query:   183 SNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM 242
               LT +  + L+ N L G++P E   + +L+ LD S N+L+G IP+    +  L  L+L 
Sbjct:   250 GGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDELCRVP-LESLNLY 308

Query:   243 YNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDI 302
              N + G +P S+   P+L  + I+ N  +G LP++LG NS LRW+DVS N F+G +P D+
Sbjct:   309 ENNLEGELPASIALSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSENEFSGDLPADL 368

Query:   303 CSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDLS 362
             C+ G L +L++  N+F+G             R+RL  N FSG +P  F  LP +N ++L 
Sbjct:   369 CAKGELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELV 428

Query:   363 RNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP- 421
              N F+G I   I  AS L    +SNN +  G +P +  SL +L   SAS    +G+LP  
Sbjct:   429 NNSFSGEISKSIGGASNLSLLILSNN-EFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDS 487

Query:   422 FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDL 481
               S   +  ++ H N  SG +   + +  +L  ++LA+N+  G IP+ +  L VL  LDL
Sbjct:   488 LMSLGELGTLDLHGNQFSGELTSGIKSWKKLNELNLADNEFTGKIPDEIGSLSVLNYLDL 547

Query:   482 SHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQP 541
             S N  SG+IP    S   L  LN+S+N +SG +P   + + M  +++ GNP LCG     
Sbjct:   548 SGNMFSGKIPVSLQSLK-LNQLNLSYNRLSGDLPPS-LAKDMYKNSFIGNPGLCGDIKGL 605

Query:   542 CHASVAILGKG-TGKLKFVLLLCAGIVMXXXX----XXXXXXXXRRGGKGHWKMISFLGL 596
             C +      +G    L+ + +L A +++                R   +  W ++SF  L
Sbjct:   606 CGSENEAKKRGYVWLLRSIFVLAAMVLLAGVAWFYFKYRTFKKARAMERSKWTLMSFHKL 665

Query:   597 PQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR---------- 646
               F+ +++L S +      A    S    K VL  G TV+VK++  G+ +          
Sbjct:   666 G-FSEHEILESLDEDNVIGAGA--SGKVYKVVLTNGETVAVKRLWTGSVKETGDCDPEKG 722

Query:   647 IK--IVSE-F---ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR 698
              K  +  E F   +  +G +RHKN+++L   C  R    L+Y+Y+PNG+L + + + +
Sbjct:   723 YKPGVQDEAFEAEVETLGKIRHKNIVKLWCCCSTRDCKLLVYEYMPNGSLGDLLHSSK 780

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 7.7e-116, Sum P(2) = 7.7e-116
 Identities = 236/711 (33%), Positives = 362/711 (50%)

Query:    20 LVDLNLSHNSFSGQFPVEIFNLT-SLISLDISRNNFSGHFPGGIQ-SLRNLLVLDAFSNS 77
             L  L+L +NS +G    + F+   +LISLD+S N   G  P  +  +L NL  L+   N+
Sbjct:    91 LHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNN 150

Query:    78 FSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLN-DQIPAELGM 136
              S ++P+   +   L+ LNLAG++ SG IP+  G+  +L+ L LA NL +  QIP++LG 
Sbjct:   151 LSDTIPSSFGEFRKLESLNLAGNFLSGTIPASLGNVTTLKELKLAYNLFSPSQIPSQLGN 210

Query:   137 LKTVTHMEI-GYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
             L  +  + + G N   G IP  L  ++ +  LD+    L+GSIP  ++ L  +E + LF 
Sbjct:   211 LTELQVLWLAGCNLV-GPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKTVEQIELFN 269

Query:   196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
             N  +G++P     +TTLK  D S N+L+G IP++  +L NL  L+L  N + G +PES+ 
Sbjct:   270 NSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNL-NLLNLESLNLFENMLEGPLPESIT 328

Query:   256 QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFS 315
             +  +L  L ++NN  +G LP  LG NS L++VD+S N F+G IP ++C  G L  LIL  
Sbjct:   329 RSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLILID 388

Query:   316 NNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDIN 375
             N+F+G             R+RL +N  SG+IP  F  LP ++ ++LS N FTG IP  I 
Sbjct:   389 NSFSGEISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTII 448

Query:   376 QASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP-FKSCKSISVIESH 434
              A  L    +S N +  G IP +  SL  +   S +  + +G +P      K +S ++  
Sbjct:   449 GAKNLSNLRISKN-RFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDLS 507

Query:   435 MNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKF 494
              N LSG IP  +     L  ++LANN L G IP+ +  LPVL  LDLS N  SG+IP + 
Sbjct:   508 KNQLSGEIPRELRGWKNLNELNLANNHLSGEIPKEVGILPVLNYLDLSSNQFSGEIPLEL 567

Query:   495 GSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVAILGKGTG 554
              +   L VLN+S+N +SG IP     ++     + GNP LC      C         G  
Sbjct:   568 QNLK-LNVLNLSYNHLSGKIPPLYANKIYAHD-FIGNPGLCVDLDGLCRKITRSKNIGYV 625

Query:   555 KLKFVLLLCAGIVMXXXXXXXXXXXXR-RGGKGHW----KMISFLGLPQFTANDVLRSFN 609
              +   + L AG+V             + R  K       K  SF  L  F+ +++    +
Sbjct:   626 WILLTIFLLAGLVFVVGIVMFIAKCRKLRALKSSTLAASKWRSFHKL-HFSEHEIADCLD 684

Query:   610 STECEEAARPQSAAGCKAVLPTGITVSVKKI---------EWGATRIK--IVSEFITRIG 658
               E        S    K  L  G  V+VKK+         E+ +  +   + +  +  +G
Sbjct:   685 --EKNVIGFGSSGKVYKVELRGGEVVAVKKLNKSVKGGDDEYSSDSLNRDVFAAEVETLG 742

Query:   659 TVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG 709
             T+RHK+++RL   C +     L+Y+Y+PNG+L++ +   R    K  +VLG
Sbjct:   743 TIRHKSIVRLWCCCSSGDCKLLVYEYMPNGSLADVLHGDR----KGGVVLG 789

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 5.5e-113, Sum P(2) = 5.5e-113
 Identities = 276/840 (32%), Positives = 433/840 (51%)

Query:     4 LSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTS-LISLDISRNNFSGHFPGGI 62
             +SG  P    RI    L+++ LS N+ +G       +L S L +L +++NNFSG  P   
Sbjct:    86 ISGGFPYGFCRI--RTLINITLSQNNLNGTIDSAPLSLCSKLQNLILNQNNFSGKLPEFS 143

Query:    63 QSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLA 122
                R L VL+  SN F+G +P    +L  L+VLNL G+  SG +P+  G    L  L LA
Sbjct:   144 PEFRKLRVLELESNLFTGEIPQSYGRLTALQVLNLNGNPLSGIVPAFLGYLTELTRLDLA 203

Query:   123 GNLLNDQ-IPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 181
                 +   IP+ LG L  +T + + ++   G IP  + N+  ++ LD+A  +L+G IP+ 
Sbjct:   204 YISFDPSPIPSTLGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPES 263

Query:   182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
             +  L  +  + L+ N+L+G++P     +T L++ D+S N L+G +PE  A L+ L   +L
Sbjct:   264 IGRLESVYQIELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKIAALQ-LISFNL 322

Query:   242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
               N  +G +P+ +   P+L    I+NN F+G+LP NLG+ S++   DVSTN F+G +PP 
Sbjct:   323 NDNFFTGGLPDVVALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVSTNRFSGELPPY 382

Query:   302 ICSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDL 361
             +C    L K+I FSN  +G              +R+ DN  SGE+P +F +LP +  ++L
Sbjct:   383 LCYRRKLQKIITFSNQLSGEIPESYGDCHSLNYIRMADNKLSGEVPARFWELP-LTRLEL 441

Query:   362 SRNG-FTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
             + N    G IP  I++A  L    +S N    G+IP +   L  L+    S  +  G++P
Sbjct:   442 ANNNQLQGSIPPSISKARHLSQLEISAN-NFSGVIPVKLCDLRDLRVIDLSRNSFLGSIP 500

Query:   421 P-FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVL 479
                   K++  +E   N L G IP SVS+C EL  ++L+NN+L G IP  L  LPVL  L
Sbjct:   501 SCINKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNYL 560

Query:   480 DLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGA-- 537
             DLS+N L+G+IPA+      L   NVS N + G IPSG    +   S + GNP LC    
Sbjct:   561 DLSNNQLTGEIPAELLRLK-LNQFNVSDNKLYGKIPSGFQQDIFRPS-FLGNPNLCAPNL 618

Query:   538 -PLQPCHASVAILGKGTGKLKFVLLLCAGIVMXXXXXXXXXXX--XRRGGKGHWKMISFL 594
              P++PC +      + T  +  + +LC   +               +R  K   K+  F 
Sbjct:   619 DPIRPCRSK-----RETRYILPISILCIVALTGALVWLFIKTKPLFKRKPKRTNKITIFQ 673

Query:   595 GLPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFI 654
              +  FT  D+      TE        S    +  L +G T++VKK+ WG T  K  SE +
Sbjct:   674 RVG-FTEEDIYPQL--TEDNIIGSGGSGLVYRVKLKSGQTLAVKKL-WGETGQKTESESV 729

Query:   655 TR-----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR--------DWA 701
              R     +G VRH N+++LL  C      +L+Y+++ NG+L + + +++        DW 
Sbjct:   730 FRSEVETLGRVRHGNIVKLLMCCNGEEFRFLVYEFMENGSLGDVLHSEKEHRAVSPLDWT 789

Query:   702 AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF 761
              ++ I +G A+GL +LHHD  P I H D+K++NI+ D  M+P +A+FG     +  D   
Sbjct:   790 TRFSIAVGAAQGLSYLHHDSVPPIVHRDVKSNNILLDHEMKPRVADFGLAKPLKREDNDG 849

Query:   762 PAKIAWT-ESGEFYNAMKEEMYM-------DVYGFGEIILEILTNGRLTNAGSSLQNKPI 813
              + ++ +  +G +     E  Y        DVY FG ++LE++T G+  N  S  +NK I
Sbjct:   850 VSDVSMSCVAGSYGYIAPEYGYTSKVNEKSDVYSFGVVLLELIT-GKRPNDSSFGENKDI 908

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII0976 hypothetical protein (953 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	872
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-166
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-17
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-16
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-16
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	8e-16
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-15
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-15
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-15
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-14
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	2e-13
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	8e-13
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	4e-12
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-11
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	6e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-10
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	6e-10
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	4e-09
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	1e-08
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-08
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	4e-08
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	4e-08
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	6e-08
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	7e-08
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	8e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-07
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-07
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	2e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-07
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-07
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	3e-07
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	5e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	5e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	9e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-06
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	5e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-06
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-05
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	1e-05
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-05
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-05
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-05
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	4e-05
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	4e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	5e-05
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	5e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	6e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-05
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-04
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	1e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-04
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	3e-04
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	3e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	3e-04
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-04
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	6e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	6e-04
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	0.001
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	0.001
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.001
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	0.002
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	0.002
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	0.003
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	0.003
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	0.003
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	0.003
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	0.004
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	0.004
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  508 bits (1309), Expect = e-166
 Identities = 310/892 (34%), Positives = 469/892 (52%), Gaps = 51/892 (5%)

Query: 2   KGLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLT-SLISLDISRNNFSGHFPG 60
           K +SG +     R+ + + +  NLS+N  SG  P +IF  + SL  L++S NNF+G  P 
Sbjct: 79  KNISGKISSAIFRLPYIQTI--NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136

Query: 61  GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
           G  S+ NL  LD  +N  SG +P +I     LKVL+L G+   G IP+   +  SLEFL 
Sbjct: 137 G--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           LA N L  QIP ELG +K++  + +GYN   G IP+++G ++ + +LD+   NL+G IP 
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
            L NL  L+ LFL++N+L+G +P     +  L SLDLSDN LSG IPE    L+NL +L 
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           L  N  +G +P +L  LP L++L +W+N FSG +P+NLG+++ L  +D+STNN  G IP 
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
            +CS G LFKLILFSN+  G +  SL  C SL R+RL+DNSFSGE+P +F++LP + ++D
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
           +S N   G I +       L+  +++ N   GG+    ++    L+N   S    +G +P
Sbjct: 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSFGSKRLENLDLSRNQFSGAVP 492

Query: 421 -PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVL 479
               S   +  ++   N LSG IP+ +S+C +L  +DL++N+L G IP   + +PVL  L
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Query: 480 DLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCG--- 536
           DLS N LSG+IP   G+  SL  +N+S N + GS+PS      + +SA AGN  LCG   
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDT 612

Query: 537 -APLQPCHASVAILGKGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGG---------KG 586
            + L PC      + K      ++       ++    A   +F   R            G
Sbjct: 613 TSGLPPCK----RVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDG 668

Query: 587 HWKMISFLG--LPQFTANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA 644
            W++  F        T ND+L S          +  ++   K++   G+   VK+I    
Sbjct: 669 TWELQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIK-NGMQFVVKEIN--- 724

Query: 645 TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKY 704
               I S  I  +G ++H N+++L+G C +   AYL+++Y+   NLSE +R    W  + 
Sbjct: 725 DVNSIPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN-LSWERRR 783

Query: 705 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK 764
           KI +G+A+ L FLH  C PA+  G+L    I+ D   EPHL       L       F + 
Sbjct: 784 KIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISS 842

Query: 765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-----------NGRLTN-AGSSLQNKP 812
                       + E+   D+YGFG I++E+LT           +G +   A     +  
Sbjct: 843 AYVAPETRETKDITEK--SDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCH 900

Query: 813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL 864
           +D  +      +     S  Q+EI  V+++AL CT + P+ RP   + LK L
Sbjct: 901 LDMWIDPSIRGD----VSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  177 bits (450), Expect = 1e-45
 Identities = 117/359 (32%), Positives = 171/359 (47%), Gaps = 51/359 (14%)

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWE-FSRVTTLKSLDLS 218
           N S V  +D++G N+SG I   +  L  ++++ L  NQL+G +P + F+  ++L+ L+LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 219 DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL 278
           +N  +G IP                             +P+LE L + NN  SG +P ++
Sbjct: 127 NNNFTGSIPRGS--------------------------IPNLETLDLSNNMLSGEIPNDI 160

Query: 279 GRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLE 338
           G  S L+ +D+  N   G IP  + +   L  L L SN   G +   L    SL  + L 
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 339 DNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQ 398
            N+ SGEIP +   L  +N++DL  N  TG IP+ +     L+Y  +  N KL G IP  
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPS 279

Query: 399 TWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLA 458
            +SL  L +   S                        N+LSG IPE V     LE + L 
Sbjct: 280 IFSLQKLISLDLSD-----------------------NSLSGEIPELVIQLQNLEILHLF 316

Query: 459 NNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
           +N   G IP  L  LP L VL L  N  SG+IP   G  ++LTVL++S N+++G IP G
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  113 bits (283), Expect = 2e-25
 Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 5/204 (2%)

Query: 315 SNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI 374
           S +       + +N S +V + L   + SG+I     +LP I  I+LS N  +G IP DI
Sbjct: 54  SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI 113

Query: 375 -NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP-PFKSCKSISVIE 432
              +S L Y N+SNN    G IP    S+P+L+    S   ++G +P    S  S+ V++
Sbjct: 114 FTTSSSLRYLNLSNN-NFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170

Query: 433 SHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPA 492
              N L G IP S++N   LE + LA+N+L+G IP  L ++  L  + L +N+LSG+IP 
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 493 KFGSCSSLTVLNVSFNDISGSIPS 516
           + G  +SL  L++ +N+++G IPS
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPS 254

Length = 968

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 70/265 (26%), Positives = 105/265 (39%), Gaps = 51/265 (19%)

Query: 625 CKAV-LPTGITVSVKKI------EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ 677
            KA    TG  V+VK +                 E I  +  + H N++RL+    ++  
Sbjct: 16  YKAKHKGTGKIVAVKILKKRSEKSK--KDQTARRE-IRILRRLSHPNIVRLIDAFEDKDH 72

Query: 678 AYLLYDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 734
            YL+ +Y   G+L + +       +  AK KI L + RGL +LH +    I H DLK  N
Sbjct: 73  LYLVMEYCEGGDLFDYLSRGGPLSEDEAK-KIALQILRGLEYLHSN---GIIHRDLKPEN 128

Query: 735 IVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEF--------YNA----MKEEMY 782
           I+ DEN    +A+FG             AK     S           Y A    +    Y
Sbjct: 129 ILLDENGVVKIADFGL------------AKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGY 176

Query: 783 ---MDVYGFGEIILEILTNGRL--TNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK 837
              +DV+  G +IL  L  G+   +      Q + I  +LG     +E   SS  ++   
Sbjct: 177 GPKVDVWSLG-VILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKD 235

Query: 838 LVLDVALLCTRSTPSDRPSMEEALK 862
           L+      C    PS RP+ EE L+
Sbjct: 236 LIKK----CLNKDPSKRPTAEEILQ 256

Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.5 bits (209), Expect = 9e-17
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 14/150 (9%)

Query: 438 LSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSC 497
           L G IP  +S    L+ I+L+ N + G+IP  L  +  L VLDLS+NS +G IP   G  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 498 SSLTVLNVSFNDISGSIPSGKVLRLM--GSSAYAGNPKLCGAP-LQPC--HASVAILGKG 552
           +SL +LN++ N +SG +P+    RL+   S  +  N  LCG P L+ C  H SV      
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVGA---- 545

Query: 553 TGKLKFVLLLCAGIVMFIAAALLGIFFFRR 582
             K+     +    +  +  A   + +++R
Sbjct: 546 --KIGIAFGVSVAFLFLVICA---MCWWKR 570

Length = 623

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 43/254 (16%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
             + V+VK ++  A+  +I  EF+        + H N+++LLG C      Y++ +Y+  
Sbjct: 27  KKVEVAVKTLKEDASEQQI-EEFLREARIMRKLDHPNVVKLLGVCTEEEPLYIVMEYMEG 85

Query: 688 GNLSEKIRTKRD---WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L   +R  R     +      L +ARG+ +L    +  I H DL A N +  EN+   
Sbjct: 86  GDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNF--I-HRDLAARNCLVGENLVVK 142

Query: 745 LAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEII 792
           +++FG         Y  +   G  P  I W   ES   G+F +        DV+ FG ++
Sbjct: 143 ISDFGLSRDLYDDDYYRK-RGGKLP--IRWMAPESLKEGKFTSK------SDVWSFGVLL 193

Query: 793 LEILTNGRLTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEI-KLVLDVALLCTRST 850
            EI T G           +P  G+   E+    + G            + D+ L C    
Sbjct: 194 WEIFTLGE----------QPYPGMSNEEVLEYLKNGYRLPQPPNCPPELYDLMLQCWAED 243

Query: 851 PSDRPSMEEALKLL 864
           P DRP+  E +++L
Sbjct: 244 PEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 26/181 (14%)

Query: 631 TGITVSVKKI---EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           TG  V++K I   +  +   +++ E I  +  + H N+++L G   + +  YL+ +Y   
Sbjct: 17  TGKKVAIKIIKKEDSSSLLEELLRE-IEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEG 75

Query: 688 GNLSEKIRTKR---DWAAKYKIVLGVARGLCFLH-HDCYPAIPHGDLKASNIVFDE-NME 742
           G+L + ++            +I+L +  GL +LH +     I H DLK  NI+ D  N +
Sbjct: 76  GSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNG----IIHRDLKPENILLDSDNGK 131

Query: 743 PHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNA---MKEEMY----MDVYGFGEIILE 794
             LA+FG  K LT   D S    I  T     Y A   +  + Y     D++  G I+ E
Sbjct: 132 VKLADFGLSKLLTS--DKSLLKTIVGT---PAYMAPEVLLGKGYYSEKSDIWSLGVILYE 186

Query: 795 I 795
           +
Sbjct: 187 L 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 78.0 bits (193), Expect = 8e-16
 Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 50/259 (19%)

Query: 630 PTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
              + V+VK ++  A+  +I  EF+        + H N+++LLG C       ++ +Y+P
Sbjct: 26  GKEVEVAVKTLKEDASEQQI-EEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMP 84

Query: 687 NGNLSEKIRTKRD----WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
            G+L + +R  R      +      L +ARG+ +L    +  I H DL A N +  EN+ 
Sbjct: 85  GGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNF--I-HRDLAARNCLVGENLV 141

Query: 743 PHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGE 790
             +++FG         Y      G  P  I W   ES   G+F +        DV+ FG 
Sbjct: 142 VKISDFGLSRDLYDDDYYKV-KGGKLP--IRWMAPESLKEGKFTSK------SDVWSFGV 192

Query: 791 IILEILTNGRLTNAGSSLQNKPIDGLLG-EMYNENEVGSS----SSLQDEIKLVLDVALL 845
           ++ EI T G           +P  G+   E+    + G       +   E+     + L 
Sbjct: 193 LLWEIFTLGE----------EPYPGMSNAEVLEYLKKGYRLPKPPNCPPEL---YKLMLQ 239

Query: 846 CTRSTPSDRPSMEEALKLL 864
           C    P DRP+  E +++L
Sbjct: 240 CWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 59/272 (21%), Positives = 104/272 (38%), Gaps = 70/272 (25%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
               V+VK ++  A+  +   +F+        + H N++RLLG C      YL+ +Y+  
Sbjct: 22  KTTEVAVKTLKEDASEEER-KDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG 80

Query: 688 GNLSEKIRTKRDWAA-----------KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
           G+L + +R  R                    + +A+G+ +L         H DL A N +
Sbjct: 81  GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLAS---KKFVHRDLAARNCL 137

Query: 737 FDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMYM---D 784
             E++   +++FG         Y  +   G  P +  W   ES      +K+ ++    D
Sbjct: 138 VGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIR--WMAPES------LKDGIFTSKSD 189

Query: 785 VYGFGEIILEILTNGRLTNAGSSLQN------------KPIDGLLGEMYNENEVGSSSSL 832
           V+ FG ++ EI T G     G S +             KP +    E+Y           
Sbjct: 190 VWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKP-EYCPDELY----------- 237

Query: 833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKLL 864
                   ++ L C +  P DRP+  E ++ L
Sbjct: 238 --------ELMLSCWQLDPEDRPTFSELVERL 261

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 58/257 (22%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           T   V+VK ++ GA+  +   EF+        + H N++RLLG C      Y++ +Y+P 
Sbjct: 27  TETKVAVKTLKEGASEEER-EEFLEEASIMKKLSHPNIVRLLGVCTQGEPLYIVTEYMPG 85

Query: 688 GNLSEKIRTKRD---WAAKYKIVLGVARGLCFLH-HDCYPAIPHGDLKASNIVFDENMEP 743
           G+L + +R   +        ++ L +A+G+ +L   +      H DL A N +  EN+  
Sbjct: 86  GDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNF----VHRDLAARNCLVTENLVV 141

Query: 744 HLAEFG-------FKYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEI 791
            +++FG         Y  +   G  P  I W   ES   G+F +        DV+ FG +
Sbjct: 142 KISDFGLSRDIYEDDYYRKRGGGKLP--IKWMAPESLKDGKFTSK------SDVWSFGVL 193

Query: 792 ILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL---------VLDV 842
           + EI T G     G S +         E+           L+D  +L         + ++
Sbjct: 194 LWEIFTLGEQPYPGMSNE---------EVLE--------LLEDGYRLPRPENCPDELYEL 236

Query: 843 ALLCTRSTPSDRPSMEE 859
            L C    P DRP+  E
Sbjct: 237 MLQCWAYDPEDRPTFSE 253

Length = 258

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 76.0 bits (188), Expect = 4e-15
 Identities = 68/258 (26%), Positives = 106/258 (41%), Gaps = 43/258 (16%)

Query: 625 CKAV-LPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAY 679
             A    TG  V++K I+    +IK   E I R    +  ++H N++RL     +  + Y
Sbjct: 16  YLARDKKTGKLVAIKVIK--KKKIKKDRERILREIKILKKLKHPNIVRLYDVFEDEDKLY 73

Query: 680 LLYDYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
           L+ +Y   G+L + ++ +     D A  Y  +  +   L +LH      I H DLK  NI
Sbjct: 74  LVMEYCEGGDLFDLLKKRGRLSEDEARFY--LRQILSALEYLHSKG---IVHRDLKPENI 128

Query: 736 VFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESG-EFYNA---MKEEMY---MDVYGF 788
           + DE+    LA+FG     QL  G        T  G   Y A   +  + Y   +D++  
Sbjct: 129 LLDEDGHVKLADFGLA--RQLDPGEK----LTTFVGTPEYMAPEVLLGKGYGKAVDIWSL 182

Query: 789 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN--ENEVGSSSSLQDEIK--LVLDVAL 844
           G I+ E+LT G+    G     +    +          E   S   +D I+  LV D   
Sbjct: 183 GVILYELLT-GKPPFPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLIRKLLVKD--- 238

Query: 845 LCTRSTPSDRPSMEEALK 862
                 P  R + EEAL+
Sbjct: 239 ------PEKRLTAEEALQ 250

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 5e-15
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 196 NQ-LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 254
           NQ L G +P + S++  L+S++LS N + G IP S   + +L +L L YN  +G++PESL
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 255 VQLPSLEILFIWNNYFSGSLPENLG 279
            QL SL IL +  N  SG +P  LG
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 36/244 (14%)

Query: 632 GITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
            +TV+VK ++     ++   EF+     +  ++H NL++LLG C      Y++ +++  G
Sbjct: 31  SLTVAVKTLKEDTMEVE---EFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYG 87

Query: 689 NLSEKIR----TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           NL + +R     + +      +   ++  + +L    +    H DL A N +  EN    
Sbjct: 88  NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVK 144

Query: 745 LAEFGFKYL------TQLADGSFPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           +A+FG   L      T  A   FP  I WT  ES  +    K  +  DV+ FG ++ EI 
Sbjct: 145 VADFGLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN---KFSIKSDVWAFGVLLWEIA 199

Query: 797 TNGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP 855
           T G     G  L    +  LL + Y  E   G           V ++   C +  PSDRP
Sbjct: 200 TYGMSPYPGIDLSQ--VYELLEKGYRMERPEGCPPK-------VYELMRACWQWNPSDRP 250

Query: 856 SMEE 859
           S  E
Sbjct: 251 SFAE 254

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.6 bits (186), Expect = 6e-14
 Identities = 36/92 (39%), Positives = 52/92 (56%)

Query: 167 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI 226
           L +    L G IP ++S L  L+S+ L  N + G +P     +T+L+ LDLS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 227 PESFADLKNLRLLSLMYNEMSGTVPESLVQLP 258
           PES   L +LR+L+L  N +SG VP +L    
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 72.0 bits (176), Expect = 2e-13
 Identities = 65/262 (24%), Positives = 116/262 (44%), Gaps = 46/262 (17%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTV----RHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
           +TV+VK ++  AT  K +S+ ++ +  +    +HKN+I LLG C      Y++ +Y   G
Sbjct: 48  VTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 106

Query: 689 NLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHGD 729
           NL E +R +R    +Y   +                   VARG+ +L    C     H D
Sbjct: 107 NLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCI----HRD 162

Query: 730 LKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
           L A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +     
Sbjct: 163 LAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ- 219

Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++  
Sbjct: 220 SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRD 274

Query: 843 ALLCTRSTPSDRPSMEEALKLL 864
              C  + PS RP+ ++ ++ L
Sbjct: 275 ---CWHAIPSHRPTFKQLVEDL 293

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 69.8 bits (171), Expect = 8e-13
 Identities = 69/266 (25%), Positives = 109/266 (40%), Gaps = 54/266 (20%)

Query: 633 ITVSVKKIEWGATR---IKIVSEF--ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
            TV+VK ++  AT      +VSE   +  IG  +HKN+I LLG C      Y++ +Y  +
Sbjct: 43  STVAVKMLKDDATEKDLSDLVSEMEMMKMIG--KHKNIINLLGVCTQEGPLYVVVEYAAH 100

Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFLHHDCYPAIPHGD 729
           GNL + +R +R                             VARG+ FL         H D
Sbjct: 101 GNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRD 157

Query: 730 LKASNIVFDENMEPHLAEFGFK-------YLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
           L A N++  E+    +A+FG         Y  +  +G  P K    E      A+ + +Y
Sbjct: 158 LAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPE------ALFDRVY 211

Query: 783 M---DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KL 838
               DV+ FG ++ EI T G     GS     P++ L   +     +    +   E+  L
Sbjct: 212 THQSDVWSFGVLLWEIFTLG-----GSPYPGIPVEELFKLLKEGYRMEKPQNCTQELYHL 266

Query: 839 VLDVALLCTRSTPSDRPSMEEALKLL 864
           + D    C    PS RP+ ++ ++ L
Sbjct: 267 MRD----CWHEVPSQRPTFKQLVEDL 288

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 69.3 bits (169), Expect = 1e-12
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 47/274 (17%)

Query: 622 AAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRH 676
           A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C    
Sbjct: 39  AIGLDKEKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 97

Query: 677 QAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL- 717
             Y++ +Y   GNL E +R +R    +Y                       VARG+ +L 
Sbjct: 98  PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA 157

Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTES 770
              C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W   
Sbjct: 158 SKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMAP 211

Query: 771 GEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS 830
              ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   S
Sbjct: 212 EALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKPS 265

Query: 831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL 864
           +  +E+ +++     C  + PS RP+ ++ ++ L
Sbjct: 266 NCTNELYMMMRD---CWHAVPSQRPTFKQLVEDL 296

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 2e-12
 Identities = 34/89 (38%), Positives = 52/89 (58%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 82
           L L +    G  P +I  L  L S+++S N+  G+ P  + S+ +L VLD   NSF+GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 83  PAEISQLEHLKVLNLAGSYFSGPIPSQFG 111
           P  + QL  L++LNL G+  SG +P+  G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 68.1 bits (166), Expect = 4e-12
 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 46/257 (17%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPNG 688
           +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y+L +Y   G
Sbjct: 45  VTVAVKMLKDDATD-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKG 103

Query: 689 NLSEKIRTKRDWAAKYKI------------------VLGVARGLCFL-HHDCYPAIPHGD 729
           NL E +R +R     Y                       VARG+ +L    C     H D
Sbjct: 104 NLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCI----HRD 159

Query: 730 LKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
           L A N++  E+    +A+FG         Y  +  +G  P K  W      ++ +     
Sbjct: 160 LAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ- 216

Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI T G     GS     P++ L   +   + +   ++   E+ +++  
Sbjct: 217 SDVWSFGVLLWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTHELYMIMRE 271

Query: 843 ALLCTRSTPSDRPSMEE 859
              C  + PS RP+ ++
Sbjct: 272 ---CWHAVPSQRPTFKQ 285

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 15/176 (8%)

Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K I  GA   +   E    +  + H  L++L G C  R    L+++++ +G LS+ +
Sbjct: 31  VAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYL 90

Query: 695 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
           R +R   ++  ++   L V  G+ +L       + H DL A N +  EN    +++FG  
Sbjct: 91  RAQRGKFSQETLLGMCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGMT 147

Query: 752 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 801
                   T      FP K  W+ S E ++  K     DV+ FG ++ E+ + G+ 
Sbjct: 148 RFVLDDQYTSSTGTKFPVK--WS-SPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKT 200

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 52/265 (19%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTV----RHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
           +TV+VK ++  AT  K +++ I+ +  +    +HKN+I LLG C      Y++ +Y   G
Sbjct: 45  VTVAVKMLKDNATD-KDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKG 103

Query: 689 NLSEKIRTKRDWAAKYKI------------------VLGVARGLCFLH-HDCYPAIPHGD 729
           NL E +R +R     Y                       VARG+ +L    C     H D
Sbjct: 104 NLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCI----HRD 159

Query: 730 LKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
           L A N++  E+    +A+FG         Y  + ++G  P K    E      A+ + +Y
Sbjct: 160 LAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPE------ALFDRVY 213

Query: 783 M---DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV 839
               DV+ FG ++ EI T G     GS     P++ L   +   + +   S+   E+ ++
Sbjct: 214 THQSDVWSFGILMWEIFTLG-----GSPYPGIPVEELFKLLREGHRMDKPSNCTHELYML 268

Query: 840 LDVALLCTRSTPSDRPSMEEALKLL 864
           +     C  + P+ RP+ ++ ++ L
Sbjct: 269 MRE---CWHAVPTQRPTFKQLVEAL 290

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 32/80 (40%), Positives = 45/80 (56%)

Query: 80  GSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKT 139
           G +P +IS+L HL+ +NL+G+   G IP   GS  SLE L L+ N  N  IP  LG L +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 140 VTHMEIGYNFYQGNIPWQLG 159
           +  + +  N   G +P  LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 32/219 (14%)

Query: 659 TVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG----VARGL 714
           T+RH NL++LLG     +  Y++ +Y+  G+L + +R++          LG    V  G+
Sbjct: 56  TLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGM 115

Query: 715 CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQ-LADGSFPAKIAWT---- 768
            +L         H DL A N++  E++   +++FG  K  +Q    G  P K  WT    
Sbjct: 116 EYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVK--WTAPEA 170

Query: 769 -ESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG 827
               +F          DV+ FG ++ EI + GR+      L+         ++    E G
Sbjct: 171 LREKKFSTK------SDVWSFGILLWEIYSFGRVPYPRIPLK---------DVVPHVEKG 215

Query: 828 SSSSLQDEI-KLVLDVALLCTRSTPSDRPSMEEALKLLS 865
                 +     V  V   C    P+ RP+ ++  + L+
Sbjct: 216 YRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLA 254

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 61.2 bits (148), Expect = 6e-10
 Identities = 63/237 (26%), Positives = 94/237 (39%), Gaps = 48/237 (20%)

Query: 652 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG-- 709
           E + ++G   H N+I LLG C +R   YL  +Y P+GNL + +R  R         +   
Sbjct: 59  EVLCKLG--HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS 116

Query: 710 ----------------VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 750
                           VARG+ +L    +    H DL A NI+  EN    +A+FG    
Sbjct: 117 TASTLSSQQLLHFAADVARGMDYLSQKQFI---HRDLAARNILVGENYVAKIADFGLSRG 173

Query: 751 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 809
            +   +   G  P +    ES    N        DV+ +G ++ EI+          SL 
Sbjct: 174 QEVYVKKTMGRLPVRWMAIES---LNYSVYTTNSDVWSYGVLLWEIV----------SLG 220

Query: 810 NKPIDGLL-GEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 861
             P  G+   E+Y +   G       +  DE   V D+   C R  P +RPS  + L
Sbjct: 221 GTPYCGMTCAELYEKLPQGYRLEKPLNCDDE---VYDLMRQCWREKPYERPSFAQIL 274

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 54/240 (22%), Positives = 108/240 (45%), Gaps = 36/240 (15%)

Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G   ++   E    + T++H  L+RL          Y++ +Y+  G+L + +
Sbjct: 33  VAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFL 92

Query: 695 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           ++            D++A+      +A G+ ++    Y    H DL+A+N++  E++   
Sbjct: 93  KSDEGGKVLLPKLIDFSAQ------IAEGMAYIERKNY---IHRDLRAANVLVSESLMCK 143

Query: 745 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +A+FG   + +  D  + A+      I WT + E  N     +  DV+ FG ++ EI+T 
Sbjct: 144 IADFGLARVIE--DNEYTAREGAKFPIKWT-APEAINFGSFTIKSDVWSFGILLYEIVTY 200

Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           G++   G S  N  +   L   Y    +    +  DE+    D+   C +    +RP+ +
Sbjct: 201 GKIPYPGMS--NSDVMSALQRGYRMPRM---ENCPDEL---YDIMKTCWKEKAEERPTFD 252

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 12/127 (9%)

Query: 201 QVPWE-----FSRVTT---LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE 252
           Q PW      F        +  L L +  L G IP   + L++L+ ++L  N + G +P 
Sbjct: 401 QHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP 460

Query: 253 SLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLI 312
           SL  + SLE+L +  N F+GS+PE+LG+ + LR ++++ N+ +G +P  +  GG L    
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL--GGRLLHRA 518

Query: 313 LFSNNFT 319
            F  NFT
Sbjct: 519 SF--NFT 523

Length = 623

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 37/240 (15%)

Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+  ++        + T++H  L++L      +   Y++ +++  G+L + +
Sbjct: 33  VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFL 91

Query: 695 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           ++            D++A+      +A G+ F+    Y    H DL+A+NI+   ++   
Sbjct: 92  KSDEGSKQPLPKLIDFSAQ------IAEGMAFIEQRNYI---HRDLRAANILVSASLVCK 142

Query: 745 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +A+FG   + +  D  + A+      I WT + E  N     +  DV+ FG +++EI+T 
Sbjct: 143 IADFGLARVIE--DNEYTAREGAKFPIKWT-APEAINFGSFTIKSDVWSFGILLMEIVTY 199

Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           GR+   G S  N  +   L   Y    +    +  +E+    ++ + C ++ P +RP+ E
Sbjct: 200 GRIPYPGMS--NPEVIRALERGY---RMPRPENCPEEL---YNIMMRCWKNRPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 58.6 bits (140), Expect = 6e-09
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 27/223 (12%)

Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKY-----KIVLGVARGLCF 716
             N+++L  F  +    YL+ +Y+  G+L + ++               I+  +   L +
Sbjct: 57  PPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEY 116

Query: 717 LHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQLADGSFPAKIAWT------- 768
           LH      I H D+K  NI+ D +     L +FG   L      +       +       
Sbjct: 117 LHSKG---IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPG 173

Query: 769 ----ESGEFYNAMKEEMYMDVYGFGEIILEILTN-----GRLTNAGSSLQNKPIDGLLGE 819
               E     +        D++  G  + E+LT      G   ++ +S   K I  L   
Sbjct: 174 YMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTP 233

Query: 820 MYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
                   S S+ +   K   D+        P +R S    L 
Sbjct: 234 SLASPL--SPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLS 274

Length = 384

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 8e-09
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query: 126 LNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNL 185
           L   IP ++  L+ +  + +  N  +GNIP  LG+++ ++ LD++  + +GSIP+ L  L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 186 TKLESLFLFRNQLAGQVP 203
           T L  L L  N L+G+VP
Sbjct: 490 TSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query: 47  LDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPI 106
           L +      G  P  I  LR+L  ++   NS  G++P  +  +  L+VL+L+ + F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 107 PSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           P   G   SL  L+L GN L+ ++PA LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           + V++K ++ G T   R   +SE  + +G   H N+IRL G       A ++ +Y+ NG 
Sbjct: 34  VAVAIKTLKPGYTEKQRQDFLSE-ASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGA 92

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L + +R      + Y++V    G+A G+ +L    Y    H DL A NI+ + N+E  ++
Sbjct: 93  LDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNY---VHRDLAARNILVNSNLECKVS 149

Query: 747 EFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +FG  + L    +G++        I WT + E     K     DV+ FG ++ E+++ G
Sbjct: 150 DFGLSRVLEDDPEGTYTTSGGKIPIRWT-APEAIAYRKFTSASDVWSFGIVMWEVMSFG 207

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 20/179 (11%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRHQA-YLLYDYLPNG 688
           TG  V+VK I+   T    + E  T + T + HKNL+RLLG     H   Y++ + +  G
Sbjct: 28  TGQKVAVKNIKCDVTAQAFLEE--TAVMTKLHHKNLVRLLGVIL--HNGLYIVMELMSKG 83

Query: 689 NLSEKIRTKRDWAAK----YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           NL   +RT+           +  L VA G+ +L       + H DL A NI+  E+    
Sbjct: 84  NLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAK 140

Query: 745 LAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM---DVYGFGEIILEILTNGR 800
           +++FG   +  +   +    + WT       A+K + +    DV+ +G ++ E+ + GR
Sbjct: 141 VSDFGLARVGSMGVDNSKLPVKWTAP----EALKHKKFSSKSDVWSYGVLLWEVFSYGR 195

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 19/192 (9%)

Query: 633 ITVSVKKIE--WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
           I V++K I+   G    + +++ +  +G++ H  ++RLLG C       L+    P G+L
Sbjct: 37  IPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGA-SLQLVTQLSPLGSL 95

Query: 691 SEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
            + +R  RD     +++   + +A+G+ +L       + H +L A NI+   +    +A+
Sbjct: 96  LDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIAD 152

Query: 748 FGFKYLTQLADGSF-------PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L    D  +       P K    ES  F     +    DV+ +G  + E+++ G 
Sbjct: 153 FGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQS---DVWSYGVTVWEMMSYGA 209

Query: 801 LTNAGSSLQNKP 812
              AG      P
Sbjct: 210 EPYAGMRPHEVP 221

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 4e-08
 Identities = 26/79 (32%), Positives = 48/79 (60%)

Query: 151 QGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVT 210
           +G IP  +  +  +Q ++++G ++ G+IP  L ++T LE L L  N   G +P    ++T
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 211 TLKSLDLSDNRLSGPIPES 229
           +L+ L+L+ N LSG +P +
Sbjct: 491 SLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 61/252 (24%)

Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G+   +        +  ++H  L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 33  VAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 91

Query: 695 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           +T            D AA+      +A G+ F+    Y    H DL+A+NI+  E +   
Sbjct: 92  KTPEGIKLTINKLIDMAAQ------IAEGMAFIERKNYI---HRDLRAANILVSETLCCK 142

Query: 745 LAEFGFKYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +A+FG   L      T      FP  I WT + E  N     +  DV+ FG ++ EI+T 
Sbjct: 143 IADFGLARLIEDNEYTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTY 199

Query: 799 GRLTNAGSS----LQN--------KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC 846
           GR+   G +    +QN        +P D    E+Y                   ++  LC
Sbjct: 200 GRIPYPGMTNPEVIQNLERGYRMPRP-DNCPEELY-------------------ELMRLC 239

Query: 847 TRSTPSDRPSME 858
            +  P +RP+ E
Sbjct: 240 WKEKPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 39/250 (15%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           I V++K I  GA   +   E    +  + H  L++L G C  +   Y++ +++ NG L  
Sbjct: 29  IKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLN 88

Query: 693 KIRTKRDWAAKYKIVLGVARGLC----FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R ++   +K  ++L + + +C    +L  + +    H DL A N +        +++F
Sbjct: 89  YLRQRQGKLSK-DMLLSMCQDVCEGMEYLERNSF---IHRDLAARNCLVSSTGVVKVSDF 144

Query: 749 GF-KYL-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLT 802
           G  +Y+     T  +   FP K  W+   E +N  K     DV+ FG ++ E+ T G++ 
Sbjct: 145 GMTRYVLDDEYTSSSGAKFPVK--WS-PPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKM- 200

Query: 803 NAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-------KLVLDVALLCTRSTPSDRP 855
                    P      E  +  EV    S    +         V +V   C    P  RP
Sbjct: 201 ---------PF-----EKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRP 246

Query: 856 SMEEALKLLS 865
           +  E L+ ++
Sbjct: 247 TFAELLRAIT 256

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 20/180 (11%)

Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 690
           G  V+VK I+  AT    ++E  + +  +RH NL++LLG         Y++ +Y+  G+L
Sbjct: 29  GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 87

Query: 691 SEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
            + +R++           K  L V   + +L  + +    H DL A N++  E+    ++
Sbjct: 88  VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNF---VHRDLAARNVLVSEDNVAKVS 144

Query: 747 EFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRL 801
           +FG  K  +   D G  P K  WT       A++E+ +    DV+ FG ++ EI + GR+
Sbjct: 145 DFGLTKEASSTQDTGKLPVK--WTAP----EALREKKFSTKSDVWSFGILLWEIYSFGRV 198

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 5e-08
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 24/130 (18%)

Query: 267 NNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSL 326
           N    G +P ++ +   L+ +++S N+  G+IPP + S   L  L L  N+F GS+  SL
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 327 SNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVS 386
              +SL  L L  NS SG +P                    GG    +++AS    FN +
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP-----------------AALGGRL--LHRAS----FNFT 523

Query: 387 NNPKLGGMIP 396
           +N  L G IP
Sbjct: 524 DNAGLCG-IP 532

Length = 623

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 24/209 (11%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG----VARGLC 715
           +RH  LI+L   C      Y++ + +  G+L E ++     A K   ++     VA G+ 
Sbjct: 58  LRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMA 117

Query: 716 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL------TQLADGSFPAKIAWTE 769
           +L    Y    H DL A N++  EN    +A+FG   +             FP K  WT 
Sbjct: 118 YLEAQNYI---HRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIK--WT- 171

Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
           + E     +  +  DV+ FG ++ EI+T GR+   G  + N  +   + + Y    +   
Sbjct: 172 APEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPG--MTNAEVLQQVDQGY---RMPCP 226

Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSME 858
                E+    D+ L C +  P DRP+ E
Sbjct: 227 PGCPKEL---YDIMLDCWKEDPDDRPTFE 252

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 46/221 (20%)

Query: 659 TVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----------DWAAKYKIVL 708
            +RH  L++L   C      Y++ +Y+  G+L + +++            D AA+     
Sbjct: 57  KLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQ----- 111

Query: 709 GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK---- 764
            +A G+ +L    Y    H DL A NI+  EN+   +A+FG   L  + D  + A+    
Sbjct: 112 -IAEGMAYLESRNY---IHRDLAARNILVGENLVCKIADFGLARL--IEDDEYTAREGAK 165

Query: 765 --IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-EMY 821
             I WT + E  N  +  +  DV+ FG ++ EI+T GR+          P  G+   E+ 
Sbjct: 166 FPIKWT-APEAANYGRFTIKSDVWSFGILLTEIVTYGRV----------PYPGMTNREVL 214

Query: 822 NENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
            + E G       +  +E+    D+ L C    P +RP+ E
Sbjct: 215 EQVERGYRMPRPPNCPEELY---DLMLQCWDKDPEERPTFE 252

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 54.7 bits (131), Expect = 8e-08
 Identities = 70/247 (28%), Positives = 107/247 (43%), Gaps = 34/247 (13%)

Query: 631 TGITVSVKKIEWGATRIK-----IVSE--FITRIGTVRHKNLIRLLGFCYNR-HQAYLLY 682
           T   V++KK+ +   +       I+ E  F+ RI   +H N I   G CY R H A+L+ 
Sbjct: 49  TNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRI---KHPNSIEYKG-CYLREHTAWLVM 104

Query: 683 DYLPNGNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           +Y   G+ S+ +   +    + +I     G  +GL +LH      + H D+KA NI+  E
Sbjct: 105 EYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTE 160

Query: 740 NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEIL 796
             +  LA+FG   +   A+ SF     W  + E   AM E  Y   +DV+  G   +E  
Sbjct: 161 PGQVKLADFGSASIASPAN-SFVGTPYWM-APEVILAMDEGQYDGKVDVWSLGITCIE-- 216

Query: 797 TNGRLTNAGSSLQN-KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP 855
               L      L N   +  L     NE+    S+   D  +  +D    C +  P DRP
Sbjct: 217 ----LAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDS---CLQKIPQDRP 269

Query: 856 SMEEALK 862
           + EE LK
Sbjct: 270 TSEELLK 276

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 43/218 (19%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----------DWAAKYKIVLG 709
           +RH+ L++L     +    Y++ +Y+  G+L + ++ +           D AA+      
Sbjct: 58  LRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQ------ 110

Query: 710 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK----- 764
           +A G+ ++    Y    H DL+A+NI+  EN+   +A+FG   L +  D  + A+     
Sbjct: 111 IASGMAYVERMNYV---HRDLRAANILVGENLVCKVADFGLARLIE--DNEYTARQGAKF 165

Query: 765 -IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-EMY 821
            I WT      Y   +  +  DV+ FG ++ E+ T GR+          P  G++  E+ 
Sbjct: 166 PIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGRV----------PYPGMVNREVL 213

Query: 822 NENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 DQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 68/260 (26%), Positives = 104/260 (40%), Gaps = 44/260 (16%)

Query: 619 PQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRI-GTVRHKNLIRLLGFCYNRHQ 677
           P +   CK  LP  +            +IK +SE   RI     H N+++L+G C  R  
Sbjct: 21  PVAVKTCKEDLPQEL------------KIKFLSE--ARILKQYDHPNIVKLIGVCTQRQP 66

Query: 678 AYLLYDYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLH-HDCYPAIPHGDLKAS 733
            Y++ + +P G+    +R K+D     ++V   L  A G+ +L   +C     H DL A 
Sbjct: 67  IYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCI----HRDLAAR 122

Query: 734 NIVFDENMEPHLAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYG 787
           N +  EN    +++FG     Q  DG + +       I WT + E  N  +     DV+ 
Sbjct: 123 NCLVGENNVLKISDFGMS--RQEDDGIYSSSGLKQIPIKWT-APEALNYGRYSSESDVWS 179

Query: 788 FGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVG-SSSSLQDEIKLVLDVALL 845
           +G ++ E            SL   P  G+  +   E  E G   S  Q     V  V   
Sbjct: 180 YGILLWETF----------SLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVYKVMQR 229

Query: 846 CTRSTPSDRPSMEEALKLLS 865
           C    P +RP   E  K L+
Sbjct: 230 CWDYKPENRPKFSELQKELA 249

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 212 LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
           LKSLDLS+NRL+     +F  L NL++L L  N ++   PE+   LPSL  L +  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 64/240 (26%), Positives = 96/240 (40%), Gaps = 49/240 (20%)

Query: 652 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR------DWAAKY- 704
           E + ++G   H N+I LLG C +R   YL  +Y P+GNL + +R  R       +A    
Sbjct: 47  EVLCKLG--HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS 104

Query: 705 -----------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 750
                           VARG+ +L    +    H DL A NI+  EN    +A+FG    
Sbjct: 105 TASTLSSQQLLHFAADVARGMDYLSQKQFI---HRDLAARNILVGENYVAKIADFGLSRG 161

Query: 751 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 809
            +   +   G  P +    ES    N        DV+ +G ++ EI+          SL 
Sbjct: 162 QEVYVKKTMGRLPVRWMAIES---LNYSVYTTNSDVWSYGVLLWEIV----------SLG 208

Query: 810 NKPIDGLL-GEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE-ALKL 863
             P  G+   E+Y +   G       +  DE   V D+   C R  P +RPS  +  + L
Sbjct: 209 GTPYCGMTCAELYEKLPQGYRLEKPLNCDDE---VYDLMRQCWREKPYERPSFAQILVSL 265

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 48/235 (20%)

Query: 652 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR------DWAAKY- 704
           E + ++G   H N+I LLG C NR   Y+  +Y P GNL + +R  R       +A ++ 
Sbjct: 54  EVLCKLG--HHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHG 111

Query: 705 -----------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 750
                      +    VA G+ +L    +    H DL A N++  EN+   +A+FG    
Sbjct: 112 TASTLTSQQLLQFASDVATGMQYLSEKQF---IHRDLAARNVLVGENLASKIADFGLSRG 168

Query: 751 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 809
            +   +   G  P +    ES    N        DV+ FG ++ EI+          SL 
Sbjct: 169 EEVYVKKTMGRLPVRWMAIES---LNYSVYTTKSDVWSFGVLLWEIV----------SLG 215

Query: 810 NKPIDGLL-GEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
             P  G+   E+Y +   G       +  DE   V ++   C R  P +RP   +
Sbjct: 216 GTPYCGMTCAELYEKLPQGYRMEKPRNCDDE---VYELMRQCWRDRPYERPPFAQ 267

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 38/232 (16%)

Query: 647 IKIVS--------EFITRIGT---VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR 695
           IKI+         +F   +     +RHK+LI L   C      Y++ + +  G+L   +R
Sbjct: 35  IKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLR 94

Query: 696 TKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
           +          ++     VA G+ +L         H DL A NI+  E++   +A+FG  
Sbjct: 95  SPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLA 151

Query: 752 -------YLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
                  YL+   D   P K  WT + E  +        DV+ FG ++ E+ T G++   
Sbjct: 152 RLIKEDVYLSS--DKKIPYK--WT-APEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYP 206

Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
           G +  N  +   +   Y    +   +    EI  ++   L C  + P DRPS
Sbjct: 207 GMN--NHEVYDQITAGY---RMPCPAKCPQEIYKIM---LECWAAEPEDRPS 250

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 35/254 (13%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLL--YDYL 685
           TG  V+VK +   +   +  S+F   I  +R   H+N+++  G C       L    +YL
Sbjct: 32  TGEQVAVKSLN-HSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYL 90

Query: 686 PNGNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
           P+G+L + ++  RD     +++L    + +G+ +L    Y    H DL A NI+ +    
Sbjct: 91  PSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYI---HRDLAARNILVESEDL 147

Query: 743 PHLAEFGF--------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILE 794
             +++FG          Y      G  P  I W  + E     K     DV+ FG  + E
Sbjct: 148 VKISDFGLAKVLPEDKDYYYVKEPGESP--IFWY-APECLRTSKFSSASDVWSFGVTLYE 204

Query: 795 ILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL---------VLDVALL 845
           + T G  + +  +   + I    G+M     +     L++  +L         V D+  L
Sbjct: 205 LFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLL---ELLKEGERLPRPPSCPDEVYDLMKL 261

Query: 846 CTRSTPSDRPSMEE 859
           C  + P DRPS  +
Sbjct: 262 CWEAEPQDRPSFAD 275

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 16/178 (8%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K ++ G++   R+  ++E  + +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 33  IDVAIKTLKAGSSDKQRLDFLTE-ASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGS 91

Query: 690 LSEKIRTKRD---WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L + +R             ++ G+A G+ +L    Y    H DL A NI+ + N+   ++
Sbjct: 92  LDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYV---HRDLAARNILVNSNLVCKVS 148

Query: 747 EFGFKYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +FG     + ++ ++  K     I WT + E     K     DV+ FG ++ E+++ G
Sbjct: 149 DFGLSRRLEDSEATYTTKGGKIPIRWT-APEAIAYRKFTSASDVWSFGIVMWEVMSYG 205

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 75/258 (29%), Positives = 108/258 (41%), Gaps = 54/258 (20%)

Query: 631 TGITVSVKKIEWGATRIK-----IVSEFITRIGTVRHKNLIRLLGFCYNR-HQAYLLYDY 684
           T   V++KK+ +   +       I+ E +  +  +RH N I   G CY R H A+L+ +Y
Sbjct: 39  TNEVVAIKKMSYSGKQSNEKWQDIIKE-VRFLQQLRHPNTIEYKG-CYLREHTAWLVMEY 96

Query: 685 LPNGNLSEKIRTKR------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
              G+ S+ +   +      + AA   I  G  +GL +LH        H D+KA NI+  
Sbjct: 97  CL-GSASDILEVHKKPLQEVEIAA---ICHGALQGLAYLHSHE---RIHRDIKAGNILLT 149

Query: 739 ENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEI 795
           E     LA+FG   L   A+ SF     W  + E   AM E  Y   +DV+  G   +E+
Sbjct: 150 EPGTVKLADFGSASLVSPAN-SFVGTPYWM-APEVILAMDEGQYDGKVDVWSLGITCIEL 207

Query: 796 ------LTNGRLTNAGSSL----QNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL 845
                 L N    NA S+L    QN                 SS+   D  +  +D    
Sbjct: 208 AERKPPLFN---MNAMSALYHIAQNDS------------PTLSSNDWSDYFRNFVD---S 249

Query: 846 CTRSTPSDRPSMEEALKL 863
           C +  P DRPS EE LK 
Sbjct: 250 CLQKIPQDRPSSEELLKH 267

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)

Query: 626 KAVLPTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY 682
           K VL     V+VK          + K + E    +    H N+++L+G C  +   Y++ 
Sbjct: 13  KGVLKGNTEVAVKTCRSTLPPDLKRKFLQE-AEILKQYDHPNIVKLIGVCVQKQPIYIVM 71

Query: 683 DYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           + +P G+L   +R K++     K++   L  A G+ +L       I H DL A N +  E
Sbjct: 72  ELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKN--CI-HRDLAARNCLVGE 128

Query: 740 NMEPHLAEFGFK-----YLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILE 794
           N    +++FG        +  ++DG     I WT + E  N  +     DV+ +G ++ E
Sbjct: 129 NNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWT-APEALNYGRYTSESDVWSYGILLWE 187

Query: 795 ILTNG 799
             + G
Sbjct: 188 TFSLG 192

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 22/236 (9%)

Query: 13  LRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFS------GHFPGGIQSLR 66
           L +     +DLNL+    +     E+  LT+L SLD+  NN +      G          
Sbjct: 90  LNLLPLPSLDLNLNRLRSN---ISELLELTNLTSLDLDNNNITDIPPLIGLLK------S 140

Query: 67  NLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLL 126
           NL  LD   N    S+P+ +  L +LK L+L+ +  S  +P    +  +L  L L+GN +
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKI 198

Query: 127 NDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 186
           +D +P E+ +L  +  +++  N     +   L N+  +  L+++  N    +P+ + NL+
Sbjct: 199 SD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLS 255

Query: 187 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM 242
            LE+L L  NQ++  +    S  T L+ LDLS N LS  +P     L  L LL  +
Sbjct: 256 NLETLDLSNNQIS-SISSLGSL-TNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309

Length = 394

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 51.9 bits (124), Expect = 5e-07
 Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 28/244 (11%)

Query: 631 TGITVSVKKIEWGATRIK-----IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
           T   V+VKK+ +   +       I+ E +  +  ++H N I   G     H A+L+ +Y 
Sbjct: 45  TNEVVAVKKMSYSGKQTNEKWQDIIKE-VKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYC 103

Query: 686 PNGNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
             G+ S+ +   +    + +I     G  +GL +LH      + H D+KA NI+  E  +
Sbjct: 104 L-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQ 159

Query: 743 PHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNG 799
             LA+FG    +  A+ SF     W  + E   AM E  Y   +DV+  G   +E     
Sbjct: 160 VKLADFGSASKSSPAN-SFVGTPYWM-APEVILAMDEGQYDGKVDVWSLGITCIE----- 212

Query: 800 RLTNAGSSLQN-KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
            L      L N   +  L     N++    S+   D  +  +D    C +  P +RP+  
Sbjct: 213 -LAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVD---YCLQKIPQERPASA 268

Query: 859 EALK 862
           E L+
Sbjct: 269 ELLR 272

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 20/180 (11%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           TG  V++KK +  +   + V +   R    +  +RH+N++ L      + + YL+++Y+ 
Sbjct: 25  TGEIVAIKKFK-ESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVE 83

Query: 687 NGNLS--EKIRTKRDWAAKYKIVLGVARGLCFLH-HDCYPAIPHGDLKASNIVFDENMEP 743
              L   E         A    +  + + + + H H+    I H D+K  NI+  E+   
Sbjct: 84  RTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHN----IIHRDIKPENILVSESGVL 139

Query: 744 HLAEFGF-KYLTQLADGSFPAKIA--WTESGEFYNAMKEEMY---MDVYGFGEIILEILT 797
            L +FGF + L           +A  W  + E    + +  Y   +DV+  G I+ E+L 
Sbjct: 140 KLCDFGFARALRARPASPLTDYVATRWYRAPELL--VGDTNYGKPVDVWAIGCIMAELLD 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 452 LERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDI 510
           L+ +DL+NN+L          LP L VLDLS N+L+   P  F    SL  L++S N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 66/264 (25%), Positives = 111/264 (42%), Gaps = 62/264 (23%)

Query: 637 VKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL---------- 685
           VKKI   A R I+++ +        RH+NL+ L+     + + YL+++++          
Sbjct: 43  VKKI---AMREIRMLKQL-------RHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEK 92

Query: 686 -PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
            PNG    ++R         K +  + RG+ F H      I H D+K  NI+  ++    
Sbjct: 93  YPNGLDESRVR---------KYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVK 140

Query: 745 LAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMKEEMY---MDVYGFGEIILEILTNG 799
           L +FGF          +   +A  W  + E    + +  Y   +D++  G ++ E+LT  
Sbjct: 141 LCDFGFARTLAAPGEVYTDYVATRWYRAPELL--VGDTKYGRAVDIWAVGCLVTEMLTGE 198

Query: 800 RLTNAGSSL-QNKPIDGLLG-------EMYNENEVGSSSSLQD--EIK-----------L 838
            L    S + Q   I   LG       E++ +N + +   L +  EI+           L
Sbjct: 199 PLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGL 258

Query: 839 VLDVALLCTRSTPSDRPSMEEALK 862
           VLD+A  C R  P DRPS  + L 
Sbjct: 259 VLDLAKQCLRIDPDDRPSSSQLLH 282

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 17/150 (11%)

Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLC----FL 717
           H NL++L G C  +   +++ +Y+ NG L   +R ++      + +L +   +C    +L
Sbjct: 58  HPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGT-EWLLDMCSDVCEAMEYL 116

Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYL-----TQLADGSFPAKIAWTESG 771
             + +    H DL A N +  E+    +++FG  +Y+     T      FP K  W    
Sbjct: 117 ESNGF---IHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVK--WA-PP 170

Query: 772 EFYNAMKEEMYMDVYGFGEIILEILTNGRL 801
           E ++  +     DV+ FG ++ E+ + G++
Sbjct: 171 EVFDYSRFSSKSDVWSFGVLMWEVFSEGKM 200

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 44/260 (16%)

Query: 635 VSVKKIEWGATRIKIVSEFIT---RIGTVRHKNLIRLLGFCYNRHQA------YLLYDYL 685
           V+VK ++        + EF++    +    H N+++L+G C+            ++  ++
Sbjct: 30  VAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFM 89

Query: 686 PNGNL-SEKIRTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
            +G+L S  + ++     +        K ++ +A G+ +L +  +    H DL A N + 
Sbjct: 90  KHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFI---HRDLAARNCML 146

Query: 738 DENMEPHLAEFGFK-------YLTQLADGSFPAKIAWTESGEFYNAMKEEMYM---DVYG 787
            E+M   +A+FG         Y  Q      P K    ES      + + +Y    DV+ 
Sbjct: 147 REDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIES------LADRVYTSKSDVWA 200

Query: 788 FGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCT 847
           FG  + EI T G+    G  ++N  I   L    + N +       DE   + D+   C 
Sbjct: 201 FGVTMWEIATRGQTPYPG--VENHEIYDYL---RHGNRLKQPEDCLDE---LYDLMYSCW 252

Query: 848 RSTPSDRPSMEEALKLLSGL 867
           R+ P DRP+  +  ++L  +
Sbjct: 253 RADPKDRPTFTKLREVLENI 272

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 11/228 (4%)

Query: 18  NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
           + L +L+LS N      P  + NL +L +LD+S N+ S   P  + +L NL  LD   N 
Sbjct: 140 SNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 78  FSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 137
            S  +P EI  L  L+ L+L+ +     + S   + K+L  L L+ N L D +P  +G L
Sbjct: 198 IS-DLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNL 254

Query: 138 KTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
             +  +++  N  Q +    LG+++ ++ LD++G +LS ++P     L  LE L      
Sbjct: 255 SNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNE 245
           L      E    + L + ++  N  +   PE+ + L++L  L  + N 
Sbjct: 313 LK---ALELKLNSILLNNNILSNGETS-SPEALSILESLNNLWTLDNA 356

Length = 394

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 29/236 (12%)

Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G    +   E    +  +RH  L++L     +    Y++ +Y+  G+L + +
Sbjct: 33  VAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 91

Query: 695 RTKRDWAAKY----KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +     A K      +   VA G+ ++    Y    H DL+++NI+  + +   +A+FG 
Sbjct: 92  KDGEGRALKLPNLVDMAAQVAAGMAYIERMNYI---HRDLRSANILVGDGLVCKIADFGL 148

Query: 751 KYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTN 803
             L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E++T GR+  
Sbjct: 149 ARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELVTKGRVPY 204

Query: 804 AGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
            G  + N+       E+  + E G       +  + L ++ L C +  P +RP+ E
Sbjct: 205 PG--MNNR-------EVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 59/260 (22%)

Query: 630 PTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
            TG  V++K I  E    + KI++E I  +   +H N+++  G    + + +++ ++   
Sbjct: 23  RTGKEVAIKVIKLESKEKKEKIINE-IQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSG 81

Query: 688 GNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLH--HDCYPAIPHGDLKASNIVFDEN 740
           G+L + +++          A   +   + +GL +LH        I H D+KA+NI+   +
Sbjct: 82  GSLKDLLKSTNQTLTESQIAY--VCKELLKGLEYLHSNG-----IIHRDIKAANILLTSD 134

Query: 741 MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA---MKEEMY---MDVYGFGEIILE 794
            E  L +FG     QL+D      +  T    ++ A   +  + Y    D++  G   +E
Sbjct: 135 GEVKLIDFGLS--AQLSDTKARNTMVGT---PYWMAPEVINGKPYDYKADIWSLGITAIE 189

Query: 795 ILTNGR------------LTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            L  G+               A          GL            S   +D +K     
Sbjct: 190 -LAEGKPPYSELPPMKALFKIA-----TNGPPGLRNPEKW------SDEFKDFLK----- 232

Query: 843 ALLCTRSTPSDRPSMEEALK 862
              C +  P  RP+ E+ LK
Sbjct: 233 --KCLQKNPEKRPTAEQLLK 250

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKY--KIVLGVARGL 714
            H  +I+L     +    Y + +Y PNG L + IR            Y  +I+L +    
Sbjct: 60  GHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALE--- 116

Query: 715 CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 749
            +LH      I H DLK  NI+ D++M   + +FG
Sbjct: 117 -YLHSK---GIIHRDLKPENILLDKDMHIKITDFG 147

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 48/260 (18%)

Query: 631 TGITVSVKKIEW----GATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYD 683
           TG  ++VK++ +     + + ++V      I     + H ++IR+LG         L  +
Sbjct: 24  TGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVE 83

Query: 684 YLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           ++  G++S  +      K      Y     + RGL +LH +    I H D+K +N++ D 
Sbjct: 84  WMAGGSVSHLLSKYGAFKEAVIINY--TEQLLRGLSYLHEN---QIIHRDVKGANLLIDS 138

Query: 740 N-MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAM------------KEEMY---M 783
                 +A+FG       A     AK   T +GEF   +            + E Y    
Sbjct: 139 TGQRLRIADFG-------AAARLAAKG--TGAGEFQGQLLGTIAFMAPEVLRGEQYGRSC 189

Query: 784 DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS-SSSLQDEIKLVLDV 842
           DV+  G +I+E+ T  +         N     L+ ++ +     S    L   ++   DV
Sbjct: 190 DVWSVGCVIIEMAT-AKPPWNAEKHSNHL--ALIFKIASATTAPSIPEHLSPGLR---DV 243

Query: 843 ALLCTRSTPSDRPSMEEALK 862
            L C    P DRP   E LK
Sbjct: 244 TLRCLELQPEDRPPSRELLK 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 30/241 (12%)

Query: 635 VSVKKIEWGATRIK-----IVSEFITRIGTVRHKNLIRLLGFCYNR-HQAYLLYDYLPNG 688
           V++KK+ +   +       I+ E +  +  +RH N I+  G CY R H A+L+ +Y   G
Sbjct: 43  VAIKKMSYSGKQSNEKWQDIIKE-VRFLQKLRHPNTIQYRG-CYLREHTAWLVMEYCL-G 99

Query: 689 NLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           + S+ +   +    + +I     G  +GL +LH      + H D+KA NI+  E     L
Sbjct: 100 SASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKL 156

Query: 746 AEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRLT 802
            +FG   +   A+  F     W  + E   AM E  Y   +DV+  G      +T   L 
Sbjct: 157 GDFGSASIMAPAN-XFVGTPYWM-APEVILAMDEGQYDGKVDVWSLG------ITCIELA 208

Query: 803 NAGSSLQN-KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 861
                L N   +  L     NE+    S    +  +  +D    C +  P DRP+ E  L
Sbjct: 209 ERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDS---CLQKIPQDRPTSEVLL 265

Query: 862 K 862
           K
Sbjct: 266 K 266

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 76/264 (28%), Positives = 107/264 (40%), Gaps = 34/264 (12%)

Query: 231 ADLKNLRLLSLMYNEM--SGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVD 288
           + L  L  L L+      S    E+L+ L  L  L +  N    ++ E L   + L  +D
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLD 122

Query: 289 VSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPL 348
           +  NN    IPP I       K +  S+N   SL   L N  +L  L L  N  S ++P 
Sbjct: 123 LDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPK 180

Query: 349 KFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNF 408
             S L ++N +DLS N  +  +P +I   S LE  ++SNN  +                 
Sbjct: 181 LLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII----------------- 222

Query: 409 SASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPE 468
                     L    S           NN    +PES+ N   LE +DL+NN++  S   
Sbjct: 223 ---------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI--SSIS 271

Query: 469 VLARLPVLGVLDLSHNSLSGQIPA 492
            L  L  L  LDLS NSLS  +P 
Sbjct: 272 SLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 53/253 (20%), Positives = 101/253 (39%), Gaps = 41/253 (16%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIG---TVRHKNLIRLLGFCYNR-HQAYLLY-DYL 685
           TG  ++VK +E      + +      I    +++H N++R  G   +       ++ +Y+
Sbjct: 24  TGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYV 83

Query: 686 PNGNLSEKIRTKRDWAAKYKIVLGVAR----GLCFLH-HDCYPAIPHGDLKASNIVFDEN 740
             G+LS  +  K+       ++    R    GL +LH +     I H D+K +NI+ D +
Sbjct: 84  SGGSLSSLL--KKFGKLPEPVIRKYTRQILEGLAYLHSNG----IVHRDIKGANILVDSD 137

Query: 741 MEPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNA---MKEEMY---MDVYGFGEIIL 793
               LA+FG  K L  +  G     +  T    ++ A   ++ E Y    D++  G  ++
Sbjct: 138 GVVKLADFGCAKRLGDIETGEGTGSVRGT---PYWMAPEVIRGEEYGRAADIWSLGCTVI 194

Query: 794 EILTNGRLTNAGSSLQNKP---IDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRS 849
           E+ T              P   +   +  +Y     G    + + + +   D    C R 
Sbjct: 195 EMATGKP-----------PWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRR 243

Query: 850 TPSDRPSMEEALK 862
            P  RP+ +E L+
Sbjct: 244 DPKKRPTADELLQ 256

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 49/253 (19%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V+VK +  GAT  +   EF+     +    H N+++LLG C      Y++ + +  G+
Sbjct: 27  IRVAVKTLRKGAT-DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGD 85

Query: 690 LSEKIRTKRDWAAKY-----------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
           L   +R  R    ++            I L VA+G  +L    +    H DL A N +  
Sbjct: 86  LLSYLRDAR--VERFGPPLLTLKELLDICLDVAKGCVYLEQMHF---IHRDLAARNCLVS 140

Query: 739 ENMEP-----HLAEFGF-------KYLTQLADGSFPAKIAWTES---GEFYNAMKEEMYM 783
           E          + +FG         Y  +  +G  P +    ES   G+F          
Sbjct: 141 EKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKF------TTQS 194

Query: 784 DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA 843
           DV+ FG ++ EILT G+      + Q      +L  +     +    +  D+I     + 
Sbjct: 195 DVWSFGVLMWEILTLGQQPYPALNNQE-----VLQHVTAGGRLQKPENCPDKIY---QLM 246

Query: 844 LLCTRSTPSDRPS 856
             C    PS+RP+
Sbjct: 247 TNCWAQDPSERPT 259

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 46.3 bits (111), Expect = 3e-05
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 631 TGITVSVKKIEWG---------ATR-IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL 680
           TG  V++KKI            A R I ++ E        +H N+++LL   +   + YL
Sbjct: 23  TGEIVALKKIRLDNEEEGIPSTALREISLLKEL-------KHPNIVKLLDVIHTERKLYL 75

Query: 681 LYDYLPN--GNLSEKIRTKRDWAAKYK-IVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
           +++Y         +K           K I+  + RGL + H      I H DLK  NI+ 
Sbjct: 76  VFEYCDMDLKKYLDKRPGPLS-PNLIKSIMYQLLRGLAYCHSHR---ILHRDLKPQNILI 131

Query: 738 DENMEPHLAEFG 749
           + +    LA+FG
Sbjct: 132 NRDGVLKLADFG 143

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 41/242 (16%)

Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE-- 692
           V++K ++ G    +   +    +  +RH  L+ L     +    Y++ +++  G+L +  
Sbjct: 33  VAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVV-SEEPIYIVTEFMGKGSLLDFL 91

Query: 693 --------KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
                   K+    D AA+      +A G+ ++    Y    H DL+A+NI+  +N+   
Sbjct: 92  KEGDGKYLKLPQLVDMAAQ------IADGMAYIERMNYI---HRDLRAANILVGDNLVCK 142

Query: 745 LAEFGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILT 797
           +A+FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E++T
Sbjct: 143 IADFGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELVT 198

Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            GR+   G  + N+ +   +   Y      G   SL + +K       LC +  P +RP+
Sbjct: 199 KGRVPYPG--MVNREVLEQVERGYRMPCPQGCPESLHELMK-------LCWKKDPDERPT 249

Query: 857 ME 858
            E
Sbjct: 250 FE 251

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 46/260 (17%)

Query: 630 PTGITVSVKKIEWG----ATRIKIVSEF-ITRIGTVRHKNLIRLLGFCYNR--HQAYLLY 682
             G  +  K+I++G      + ++VSE  I R   ++H N++R      +R     Y++ 
Sbjct: 23  SDGKILVWKEIDYGNMTEKEKQQLVSEVNILR--ELKHPNIVRYYDRIIDRSNQTLYIVM 80

Query: 683 DYLPNGNLSEKI-RTKRDWAAKY---KIVLGVARGLCFLHHDCY------PAIPHGDLKA 732
           +Y   G+L++ I + K++   KY   + +  +   L    ++C+        + H DLK 
Sbjct: 81  EYCEGGDLAQLIQKCKKE--RKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKP 138

Query: 733 SNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGF 788
           +NI  D N    L +FG  K L    D SF      T    S E  N M  +   D++  
Sbjct: 139 ANIFLDANNNVKLGDFGLAKILGH--DSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSL 196

Query: 789 GEIILEILT-----NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA 843
           G +I E+         R       L +K  +G     +       SS L + IK +L+V 
Sbjct: 197 GCLIYELCALSPPFTAR-NQL--QLASKIKEG----KFRRIPYRYSSELNEVIKSMLNV- 248

Query: 844 LLCTRSTPSDRPSMEEALKL 863
                  P  RPS EE L+L
Sbjct: 249 ------DPDKRPSTEELLQL 262

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 631 TGITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH--QAYLLYDY 684
           +G  V++KK+    E     I  + E IT +  +RH N++ L      +H    +L+ +Y
Sbjct: 31  SGEIVALKKVRMDNERDGIPISSLRE-ITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEY 89

Query: 685 LPN--GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
                 +L + + T    +    ++L + RGL +LH +    I H DLK SN++  +   
Sbjct: 90  CEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGC 146

Query: 743 PHLAEFGFKYLTQLADGSFPAKIA--WTESGEFYNAMKEE-MYMDVYGFGEIILEILTNG 799
             +A+FG      L       K+   W  + E           +D++  G I+ E+L + 
Sbjct: 147 LKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHK 206

Query: 800 RLTNAGSSL-QNKPIDGLLG 818
            L    S + Q   I  LLG
Sbjct: 207 PLLPGKSEIEQLDLIIQLLG 226

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 57/236 (24%), Positives = 87/236 (36%), Gaps = 69/236 (29%)

Query: 662 HKNLIRLLGFC-----------------YNRH---QAYLLYD-------YLPNGNLSEKI 694
           H N++RL+G C                 + +H    ++LLY        YLP   L    
Sbjct: 59  HPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQML---- 114

Query: 695 RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK--- 751
                     K +  +A G+ +L    +    H DL A N + +ENM   +A+FG     
Sbjct: 115 ---------VKFMTDIASGMEYLSSKSFI---HRDLAARNCMLNENMNVCVADFGLSKKI 162

Query: 752 ----YLTQLADGSFPAKIAWTESGEFYNAMKEEMYM---DVYGFGEIILEILTNGRLTNA 804
               Y  Q      P K    ES      + + +Y    DV+ FG  + EI T G+    
Sbjct: 163 YNGDYYRQGRIAKMPVKWIAIES------LADRVYTTKSDVWSFGVTMWEIATRGQTPYP 216

Query: 805 GSSLQNKPIDGLLGEMYNENEVGSS-SSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           G  ++N        E+Y+    G+      D +  +  +   C    P DRPS E 
Sbjct: 217 G--VENS-------EIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFET 263

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 22/171 (12%)

Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYL-LYDYLPNGNLSEKIRT-KRD 699
           T ++ V +F+     +    H N++ LLG C     + L +  Y+ +G+L   IR+   +
Sbjct: 35  TDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHN 94

Query: 700 WAAKYKIVLG--VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 749
              K  I  G  VA+G+ +L    +    H DL A N + DE+    +A+FG        
Sbjct: 95  PTVKDLIGFGLQVAKGMEYLASKKFV---HRDLAARNCMLDESFTVKVADFGLARDIYDK 151

Query: 750 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            +  +        P K    ES +     K     DV+ FG ++ E++T G
Sbjct: 152 EYYSVHNHTGAKLPVKWMALESLQTQ---KFTTKSDVWSFGVLLWELMTRG 199

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 63/229 (27%), Positives = 92/229 (40%), Gaps = 51/229 (22%)

Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR-----------TKRDWAAKY------ 704
           H N+++LLG C       LL++Y+  G+L+E +R                A K       
Sbjct: 67  HPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLP 126

Query: 705 -------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK---YLT 754
                   I   VA G+ +L    +    H DL   N +  ENM   +A+FG     Y  
Sbjct: 127 LSCTEQLCIAKQVAAGMAYLSERKFV---HRDLATRNCLVGENMVVKIADFGLSRNIYSA 183

Query: 755 QL--ADGSFPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN 810
               A  +    I W   ES  FYN    E   DV+ +G ++ EI + G        +Q 
Sbjct: 184 DYYKASENDAIPIRWMPPES-IFYNRYTTE--SDVWAYGVVLWEIFSYG--------MQ- 231

Query: 811 KPIDGLLGE--MYNENEVGSSSSLQDEIKL-VLDVALLCTRSTPSDRPS 856
            P  G+  E  +Y   + G+  S  D   L + ++  LC    PSDRPS
Sbjct: 232 -PYYGMAHEEVIYYVRD-GNVLSCPDNCPLELYNLMRLCWSKLPSDRPS 278

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 53/246 (21%), Positives = 93/246 (37%), Gaps = 29/246 (11%)

Query: 630 PTGITVSVKKI---EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           PTG   ++KKI        R +++ E  T         +++  G  Y   +  ++ +Y+ 
Sbjct: 24  PTGKIYALKKIHVDGDEEFRKQLLRELKTLRSC-ESPYVVKCYGAFYKEGEISIVLEYMD 82

Query: 687 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
            G+L++ ++            I   + +GL +LH   +  I H D+K SN++ +   E  
Sbjct: 83  GGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRH--IIHRDIKPSNLLINSKGEVK 140

Query: 745 LAEFGF-KYLTQLADG--SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR- 800
           +A+FG  K L    D   +F   + +  S E           D++  G  +LE    G+ 
Sbjct: 141 IADFGISKVLENTLDQCNTFVGTVTYM-SPERIQGESYSYAADIWSLGLTLLECAL-GKF 198

Query: 801 -LTNAGSSLQNKPIDGLL----GEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP 855
                G   Q    + +     G   +      S   +D I         C +  P  RP
Sbjct: 199 PFLPPG---QPSFFELMQAICDGPPPSLPAEEFSPEFRDFIS-------ACLQKDPKKRP 248

Query: 856 SMEEAL 861
           S  E L
Sbjct: 249 SAAELL 254

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 62/275 (22%), Positives = 102/275 (37%), Gaps = 64/275 (23%)

Query: 622 AAGCKAVLPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY 679
           AA C   LP    V++K+I  E   T +  + + +  +    H N+++         + +
Sbjct: 19  AAIC---LPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELW 75

Query: 680 LLYDYLPNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 734
           L+  YL  G+L + +++       D A    ++  V +GL +LH +      H D+KA N
Sbjct: 76  LVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGN 132

Query: 735 IVFDENMEPHLAEFG-----FKY--LTQLADGSFPAKIAWT-----ESGEFYNAMKEEMY 782
           I+  E+    +A+FG           T+    +F     W      E    Y+       
Sbjct: 133 ILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFK----- 187

Query: 783 MDVYGFGEIILEILTNGR---------------LTNAGSSLQNKPIDGLLGEMYNENEVG 827
            D++ FG   +E L  G                L N   SL+              +   
Sbjct: 188 ADIWSFGITAIE-LATGAAPYSKYPPMKVLMLTLQNDPPSLE-----------TGADYKK 235

Query: 828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
            S S +  I        LC +  PS RP+ EE LK
Sbjct: 236 YSKSFRKMIS-------LCLQKDPSKRPTAEELLK 263

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 43/143 (30%)

Query: 631 TGITVSVKKIEWG------------ATR-IKIVSEFITRIGTVRHKNLIRLLG-FCYNRH 676
           TG  V++KKI+ G            A R IK++ E        +H N+I LL  F +  +
Sbjct: 24  TGRIVAIKKIKLGERKEAKDGINFTALREIKLLQEL-------KHPNIIGLLDVFGHKSN 76

Query: 677 QAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVA----------RGLCFLHHDCYPAIP 726
              L+++++   +L + I+ K        IVL  A          RGL +LH   +  I 
Sbjct: 77  -INLVFEFME-TDLEKVIKDK-------SIVLTPADIKSYMLMTLRGLEYLH-SNW--IL 124

Query: 727 HGDLKASNIVFDENMEPHLAEFG 749
           H DLK +N++   +    LA+FG
Sbjct: 125 HRDLKPNNLLIASDGVLKLADFG 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 23/183 (12%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K ++ G T   R   +SE  + +G   H N+I L G         ++ +++ NG 
Sbjct: 33  IFVAIKTLKSGYTEKQRRDFLSE-ASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGA 91

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   +R         ++V    G+A G+ +L    Y    H DL A NI+ + N+   ++
Sbjct: 92  LDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNY---VHRDLAARNILVNSNLVCKVS 148

Query: 747 EFGF-KYL---------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           +FG  ++L         T    G  P  I WT + E     K     DV+ +G ++ E++
Sbjct: 149 DFGLSRFLEDDTSDPTYTSSLGGKIP--IRWT-APEAIAYRKFTSASDVWSYGIVMWEVM 205

Query: 797 TNG 799
           + G
Sbjct: 206 SYG 208

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 29/165 (17%)

Query: 657 IGTVRHKNLIRLLGFCYN-RHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIV---LGVAR 712
           + +V H +++RLLG C + + Q  L+   +P G L + +R  +D      ++   + +A+
Sbjct: 63  MASVDHPHVVRLLGICLSSQVQ--LITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAK 120

Query: 713 GLCFL--HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK-----I 765
           G+ +L         + H DL A N++        + +FG   L  + +  + A+     I
Sbjct: 121 GMSYLEEKR-----LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPI 175

Query: 766 AWT--ES---GEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 805
            W   ES     + +        DV+ +G  + E++T G     G
Sbjct: 176 KWMALESILHRIYTHK------SDVWSYGVTVWELMTFGAKPYEG 214

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 60/233 (25%)

Query: 661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLH 718
           +H NL++  G   +R + Y+  +Y   G L E +   R  D        L +  GL +LH
Sbjct: 57  KHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLH 116

Query: 719 HDCYPAIPHGDLKASNIVFDENMEPHLAEFG-FKYLTQLADGSFPAKIAWTESGEFYNAM 777
                 I H D+K +NI  D N    L +FG    L              T   E  +  
Sbjct: 117 SH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKL---------KNNTTTMGEEVQSLA 164

Query: 778 KEEMYM-----------------DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE- 819
               YM                 D++  G ++LE+ T G+          +P   L  E 
Sbjct: 165 GTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMAT-GK----------RPWSELDNEF 213

Query: 820 --MYNENEVGS--------SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
             M++   VG+        S  L  E K  LD    C  S P  RP+  E L+
Sbjct: 214 QIMFH---VGAGHKPPIPDSLQLSPEGKDFLD---RCLESDPKKRPTASELLQ 260

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 53/222 (23%), Positives = 84/222 (37%), Gaps = 35/222 (15%)

Query: 322 LSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPD-------INYIDLSRNGFTGGIPT-- 372
           L+ +L    SL  L L  N  +G IP     L         +  +DLS N          
Sbjct: 43  LASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101

Query: 373 -DINQASKLEYFNVSNNP--KLGGMIPAQ--TWSLPSLQNFSASACNITGN-----LPPF 422
             + ++S L+   ++NN     G  + A+      P+L+        + G          
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161

Query: 423 KSCKSISVIESHMNNLSG-----TIPESVSNCVELERIDLANNKL----IGSIPEVLARL 473
           ++ + +  +    N +             +NC  LE +DL NN L      ++ E LA L
Sbjct: 162 RANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASL 220

Query: 474 PVLGVLDLSHNSLSGQIPAKFGS-----CSSLTVLNVSFNDI 510
             L VL+L  N+L+    A   S       SL  L++S NDI
Sbjct: 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 21/179 (11%)

Query: 635 VSVKKIEWGATRIKIVSEFITRIGT---VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V++K I+ G+       EFI        + H+ L++L G C  +   Y++ +Y+ NG L 
Sbjct: 31  VAIKMIKEGSMS---EDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLL 87

Query: 692 EKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
             +R        +   ++   V  G+ +L    +    H DL A N + D+     +++F
Sbjct: 88  NYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQF---IHRDLAARNCLVDDQGCVKVSDF 144

Query: 749 GF-KYL-----TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G  +Y+     T      FP +  W+   E     K     DV+ FG ++ E+ + G++
Sbjct: 145 GLSRYVLDDEYTSSVGSKFPVR--WSPP-EVLLYSKFSSKSDVWAFGVLMWEVYSLGKM 200

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 19/130 (14%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 687
           TG  V++KKI        + S  I  I  ++   H N+++LL   +  ++ YL++++   
Sbjct: 24  TGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF--- 80

Query: 688 GNLSEKIRTKRDWAAKYKIVLGVAR--------GLCFLHHDCYPAIPHGDLKASNIVFDE 739
             L + ++   D +    I L + +        GL F H      + H DLK  N++ + 
Sbjct: 81  --LHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINT 135

Query: 740 NMEPHLAEFG 749
                LA+FG
Sbjct: 136 EGAIKLADFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 24/132 (18%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI-------GTVRHKNLIRLLGFCYNRHQAYLLYD 683
           TG  V++K+I       KI  E +  I         ++H N+++ +G        Y++ +
Sbjct: 24  TGDFVAIKQIS----LEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILE 79

Query: 684 YLPNGNLSEKIRTKR------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
           Y  NG+L + I  K+         A Y  V  V +GL +LH      + H D+KA+NI+ 
Sbjct: 80  YAENGSLRQII--KKFGPFPESLVAVY--VYQVLQGLAYLHEQ---GVIHRDIKAANILT 132

Query: 738 DENMEPHLAEFG 749
            ++    LA+FG
Sbjct: 133 TKDGVVKLADFG 144

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 187 KLESLFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN 244
            L+SL L  N+L   +P   F  +  LK LDLS N L+   PE+F+ L +LR L L  N
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 55/277 (19%)

Query: 629 LPTGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
                TV+VK ++  A+  +   ++SEF   +  V H ++I+L G C       L+ +Y 
Sbjct: 27  RAGYTTVAVKMLKENASSSELRDLLSEF-NLLKQVNHPHVIKLYGACSQDGPLLLIVEYA 85

Query: 686 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIP------------------- 726
             G+L   +R  R     Y +     R   +L +    A+                    
Sbjct: 86  KYGSLRSFLRESRKVGPSY-LGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLA 144

Query: 727 -----HGDLKASNIVFDENMEPHLAEFGFK--------YLTQLADGSFPAKIAWTESGEF 773
                H DL A N++  E  +  +++FG          Y+ + + G  P K    ES   
Sbjct: 145 EMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKR-SKGRIPVKWMAIES--- 200

Query: 774 YNAMKEEMYM---DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS 830
              + + +Y    DV+ FG ++ EI+T G     G + +   +  LL   Y      + S
Sbjct: 201 ---LFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPER--LFNLLKTGYRMERPENCS 255

Query: 831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                 + + ++ L C +  P  RP+  +  K L  +
Sbjct: 256 ------EEMYNLMLTCWKQEPDKRPTFADISKELEKM 286

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 21/137 (15%)

Query: 679 YLLYDYLPNGNLSEKIRT----KRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKA 732
           YL+ +YL  G+ +  I+T      DWA +Y  ++VLGV      LH      I H D+K 
Sbjct: 73  YLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVE----DLHQR---GIIHRDIKP 125

Query: 733 SNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFG 789
            N++ D+     L +FG         G    K   T    + E    + ++   D +  G
Sbjct: 126 ENLLIDQTGHLKLTDFGLSRN-----GLENKKFVGTPDYLAPETILGVGDDKMSDWWSLG 180

Query: 790 EIILEILTNGRLTNAGS 806
            +I E L      +A +
Sbjct: 181 CVIFEFLFGYPPFHAET 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 41/257 (15%)

Query: 631 TGITVSVKKIEW-GATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++   A  ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 32  TGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPY 91

Query: 688 GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDC----YPAIP---HGDLKASNIVFDEN 740
           G+L       RD+  K++  L   + L +    C    Y       H DL   NI+ +  
Sbjct: 92  GSL-------RDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESE 144

Query: 741 MEPHLAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEII 792
               + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++
Sbjct: 145 NRVKIGDFGLTKVLPQDKEYYKVREPGESP--IFWY-APESLTESKFSVASDVWSFGVVL 201

Query: 793 LEILTNGR---------LTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEIKLVLDV 842
            E+ T            +   G+  Q + I   L E+   N  + +      EI  ++  
Sbjct: 202 YELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIM-- 259

Query: 843 ALLCTRSTPSDRPSMEE 859
              C  + PS RPS  E
Sbjct: 260 -KECWNNDPSQRPSFSE 275

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 35/167 (20%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE------------------KIRTKRDWA 701
           ++H N++ LLG C       +L++YL +G+L E                   +++  D +
Sbjct: 65  LQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCS 124

Query: 702 AKYKIVLGVARGLCFL--HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KY 752
               I + +A G+ +L  HH       H DL A N +  E +   +++FG         Y
Sbjct: 125 DFLHIAIQIAAGMEYLSSHHFV-----HRDLAARNCLVGEGLTVKISDFGLSRDIYSADY 179

Query: 753 LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
               +    P +    E+  +     E    D++ FG ++ EI + G
Sbjct: 180 YRVQSKSLLPVRWMPPEAILYGKFTTES---DIWSFGVVLWEIFSYG 223

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 17/130 (13%)

Query: 630 PTGITVSVKKIEWGATRIKIVSEFITRI-------GTVRHKNLIRLLGFCYNRHQAYLLY 682
           PTG  ++VK I     R++I      +I              ++   G  YN     +  
Sbjct: 24  PTGKIMAVKTI-----RLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICM 78

Query: 683 DYLPNGNLSEKIRTKRDWAAKY---KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           +Y+  G+L + ++  +    +    KI + V +GL +LH      I H D+K SNI+ + 
Sbjct: 79  EYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKH--KIIHRDVKPSNILVNS 136

Query: 740 NMEPHLAEFG 749
             +  L +FG
Sbjct: 137 RGQIKLCDFG 146

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 56/240 (23%), Positives = 92/240 (38%), Gaps = 60/240 (25%)

Query: 658 GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYK-----------I 706
             + HKN++RLLG C      Y++ +Y   G+L + +R  +    K K           +
Sbjct: 63  RKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVAL 122

Query: 707 VLGVARGLCFLHHDCYPAIPHGDLKASN-IVFDENM----------EPHLAEFGFKYLTQ 755
              +A G+  L +  +    H DL A N +V  +            + + +E+ +K    
Sbjct: 123 CTQIALGMDHLSNARF---VHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEY-YKLRNA 178

Query: 756 LADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRLTNAGSS----- 807
           L        + W        A++E+ +    DV+ FG ++ E+ T G L   G S     
Sbjct: 179 L------IPLRWLA----PEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVL 228

Query: 808 --LQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
             LQ   ++  + E       G  S L    KL+      C    P DRPS  E +  L 
Sbjct: 229 NRLQAGKLELPVPE-------GCPSRLY---KLMTR----CWAVNPKDRPSFSELVSALG 274

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 335 LRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGM 394
           L L++    G IP   S+L  +  I+LS N   G IP  +   + LE  ++S N    G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGS 481

Query: 395 IPAQTWSLPSLQNFSASACNITGNLP 420
           IP     L SL+  + +  +++G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 9/206 (4%)

Query: 177 SIPKELSNLT-KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKN 235
            IP  +  L   L+ L L  N++   +P     +  LK+LDLS N LS  +P+  ++L N
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSN 187

Query: 236 LRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN 295
           L  L L  N++S  +P  +  L +LE L + NN     L  +L     L  +++S N   
Sbjct: 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLE 245

Query: 296 GSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFS-QLP 354
               P+        + +  SNN   S+S SL + ++L  L L  NS S  +PL     L 
Sbjct: 246 D--LPESIGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLL 302

Query: 355 DINYIDLSRNGFTGGIPTDINQASKL 380
               ++L        +  +    +  
Sbjct: 303 LELLLNLLLTLKALELKLNSILLNNN 328

Length = 394

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 41/191 (21%)

Query: 631 TGITVSVKKI------EWGATR----IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL 680
           TG  V++KKI      E         IK++ E         H N+I+LL    ++   YL
Sbjct: 23  TGEIVAIKKIKLRFESEGIPKTALREIKLLKEL-------NHPNIIKLLDVFRHKGDLYL 75

Query: 681 LYDYLPNGNLSEKIRTKRDWAAKYKI---VLGVARGLCFLH-HDCYPAIPHGDLKASNIV 736
           +++++ + +L + I+ ++    +  I   +  + +GL F H H       H DLK  N++
Sbjct: 76  VFEFM-DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGIL----HRDLKPENLL 130

Query: 737 FDENMEPHLAEFGFKYLTQLADGSFPAKIAWTE--SGEFYNA----MKEEMY---MDVYG 787
            +      LA+FG   L +           +T      +Y A    + ++ Y   +D++ 
Sbjct: 131 INTEGVLKLADFG---LARSFGSPVR---PYTHYVVTRWYRAPELLLGDKGYSTPVDIWS 184

Query: 788 FGEIILEILTN 798
            G I  E+L+ 
Sbjct: 185 VGCIFAELLSR 195

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 29/202 (14%)

Query: 629 LPTGITVSVK---KIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY 682
           +P G TV +    KI    T  K   EF+     + ++ H +L+RLLG C +     L+ 
Sbjct: 29  VPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVT 87

Query: 683 DYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
             +P+G L + +   +D      ++   + +A+G+ +L       + H DL A N++   
Sbjct: 88  QLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKS 144

Query: 740 NMEPHLAEFGFKYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILE 794
                + +FG   L +  +  + A      I W  + E  +  K     DV+ +G  I E
Sbjct: 145 PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWM-ALECIHYRKFTHQSDVWSYGVTIWE 203

Query: 795 ILTNGRLTNAGSSLQNKPIDGL 816
           ++T G           KP DG+
Sbjct: 204 LMTFG----------GKPYDGI 215

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 31/186 (16%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K ++ G T  K   +F++    +G   H N+I L G         ++ +Y+ NG+
Sbjct: 33  IPVAIKTLKAGYTE-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGS 91

Query: 690 LSEKIRTKRDWAAKYKIVL------GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D   ++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 92  LDAFLR-KHD--GQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILVNSNLVC 145

Query: 744 HLAEFGFK----------YLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIIL 793
            +++FG            Y T+   G  P  I WT + E     K     DV+ +G ++ 
Sbjct: 146 KVSDFGLSRVLEDDPEAAYTTR--GGKIP--IRWT-APEAIAYRKFTSASDVWSYGIVMW 200

Query: 794 EILTNG 799
           E+++ G
Sbjct: 201 EVMSYG 206

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSL 486
           N L+     +      L+ +DL+ N L    PE  + LP L  LDLS N+L
Sbjct: 10  NRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLH 718
           H N++RL+G C  +   Y++ + +  G+    +RT   +       ++V   A G+ +L 
Sbjct: 52  HPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLE 111

Query: 719 HDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK-------IAWTESG 771
                   H DL A N +  E     +++FG     +  DG + +        + WT + 
Sbjct: 112 SKH---CIHRDLAARNCLVTEKNVLKISDFGMS--REEEDGVYASTGGMKQIPVKWT-AP 165

Query: 772 EFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 809
           E  N  +     DV+ FG ++ E  + G +  A  S Q
Sbjct: 166 EALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQ 203

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 49/246 (19%), Positives = 89/246 (36%), Gaps = 71/246 (28%)

Query: 659 TVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------------- 703
             +H+N+++  G C       ++++Y+ +G+L++ +R+    AA                
Sbjct: 64  NFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQ 123

Query: 704 -YKIVLGVARGLCFL--HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK---YLTQL- 756
             +I + +A G+ +L   H       H DL   N +   ++   + +FG     Y T   
Sbjct: 124 LLQIAVQIASGMVYLASQH-----FVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYY 178

Query: 757 -ADGSFPAKIAWTESGEFYNAMKEEMYM--------DVYGFGEIILEILTNGRLTNAGSS 807
              G     I W         M  E  M        DV+ FG ++ EI T G+       
Sbjct: 179 RVGGHTMLPIRW---------MPPESIMYRKFTTESDVWSFGVVLWEIFTYGK------- 222

Query: 808 LQNKPIDGLLGEMYNENEVGSSSSLQDEIKL---------VLDVALLCTRSTPSDRPSME 858
              +P  G      +  EV     +     L         V D+ L C +  P  R +++
Sbjct: 223 ---QPWYG-----LSNEEV--IECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIK 272

Query: 859 EALKLL 864
           +  + L
Sbjct: 273 DIHERL 278

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 57/228 (25%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVAR----GLC 715
           ++H N+++ LG        Y+  + +P G+L++ +  K+  +    ++    R    GL 
Sbjct: 59  LQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLL--KKYGSFPEPVIRLYTRQILLGLE 116

Query: 716 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADG-SFPAKIAWTESGEF 773
           +LH        H D+K +NI+ D N    LA+FG  K + + +   SF     W      
Sbjct: 117 YLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYW------ 167

Query: 774 YNAMKEEMYM---------DVYGFGEIILEILTN----------GRLTNAGSSLQNKPID 814
              M  E+           D++  G  +LE+ T             +   G S +  PI 
Sbjct: 168 ---MAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPI- 223

Query: 815 GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
                            L DE K   D  L C +  PS RP+  E L+
Sbjct: 224 --------------PDHLSDEAK---DFILKCLQRDPSLRPTAAELLE 254

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 18/129 (13%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLG-FCYNRHQAYLLYDYLPNGN 689
           TG  V++KK+       +++   I  +   +H N++     +       +++ +Y+  G+
Sbjct: 43  TGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDE-LWVVMEYMDGGS 101

Query: 690 LSEKIR------TKRDWAAKYKIVLGVARGLCFLH--HDCYPAIPHGDLKASNIVFDENM 741
           L++ I        +   A    +   V +GL +LH  +     + H D+K+ NI+  ++ 
Sbjct: 102 LTDIITQNFVRMNEPQIAY---VCREVLQGLEYLHSQN-----VIHRDIKSDNILLSKDG 153

Query: 742 EPHLAEFGF 750
              LA+FGF
Sbjct: 154 SVKLADFGF 162

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 625 CKAV-LPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
            KA+   TG  V++K +       +I+ E I+ +       +++  G  +     +++ +
Sbjct: 20  YKAIHKETGQVVAIKVVPVEEDLQEIIKE-ISILKQCDSPYIVKYYGSYFKNTDLWIVME 78

Query: 684 YLPNGNLSE--KIRTKRDWAAKYKIVL-GVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           Y   G++S+  KI  K     +   +L    +GL +LH +      H D+KA NI+ +E 
Sbjct: 79  YCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEE 135

Query: 741 MEPHLAEFG 749
            +  LA+FG
Sbjct: 136 GQAKLADFG 144

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 28/185 (15%)

Query: 633 ITVSVKKIEWGA---TRIKIVSEF--ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           + V+VK ++  A    R  ++SE   ++ +G   H+N++ LLG C       ++ +Y   
Sbjct: 66  MKVAVKMLKPTAHSSEREALMSELKIMSHLGN--HENIVNLLGACTIGGPILVITEYCCY 123

Query: 688 GNLSEKIRTKRDWAAKYKIVLG----VARGLCFL-HHDCYPAIPHGDLKASNIVFDENME 742
           G+L   +R KR+     + +L     VA+G+ FL   +C     H DL A N++      
Sbjct: 124 GDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCI----HRDLAARNVLLTHGKI 179

Query: 743 PHLAEFGF--------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILE 794
             + +FG          Y+ +  +   P K    ES  F      E   DV+ +G ++ E
Sbjct: 180 VKICDFGLARDIMNDSNYVVK-GNARLPVKWMAPES-IFNCVYTFE--SDVWSYGILLWE 235

Query: 795 ILTNG 799
           I + G
Sbjct: 236 IFSLG 240

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 41/191 (21%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQA--YLLYDYL 685
           TG  V+VK ++    + +  S +   I  ++   H+N+++  G C  +      L+ +Y+
Sbjct: 32  TGEMVAVKTLKRECGQ-QNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYV 90

Query: 686 PNGNLSEKIRTKRDWAAKYKIVLG--------VARGLCFLHHDCYPAIPHGDLKASNIVF 737
           P G+L       RD+  K+K+ L         +  G+ +LH   Y    H DL A N++ 
Sbjct: 91  PLGSL-------RDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYI---HRDLAARNVLL 140

Query: 738 DENMEPHLAEFGF--------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM---DVY 786
           D +    + +FG         +Y     DG  P      E       +KE  +    DV+
Sbjct: 141 DNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVE------CLKENKFSYASDVW 194

Query: 787 GFGEIILEILT 797
            FG  + E+LT
Sbjct: 195 SFGVTLYELLT 205

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 35/166 (21%)

Query: 705 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK-------YLTQLA 757
           + ++ +A G+ +L         H DL A N + +ENM   +A+FG         Y  Q  
Sbjct: 117 RFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGC 173

Query: 758 DGSFPAKIAWTESGEFYNAMKEEMYM---DVYGFGEIILEILTNGRLTNAGSSLQNKPID 814
               P K    ES      + + +Y    DV+ FG  + EI+T G+   AG  ++N    
Sbjct: 174 ASKLPVKWLALES------LADNVYTTHSDVWAFGVTMWEIMTRGQTPYAG--VEN---- 221

Query: 815 GLLGEMYNE----NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
               E+YN     N +       ++   V ++   C    P  RPS
Sbjct: 222 ---SEIYNYLIKGNRLKQPPDCLED---VYELMCQCWSPEPKCRPS 261

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIG---TVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           T  T+++KKI        + S  I  I     ++H N++RL    ++  + YL+++YL +
Sbjct: 26  TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYL-D 84

Query: 688 GNLSEKIRTKRDWAAKYKIV----LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
            +L + + +  D+A   +++      + RG+ + H      + H DLK  N++ D     
Sbjct: 85  LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNA 141

Query: 744 -HLAEFG 749
             LA+FG
Sbjct: 142 LKLADFG 148

Length = 294

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 41/225 (18%)

Query: 662 HKNLIRLLGFCYNRHQA--YLLYDYLPNGNLS---EKIRTKRDWAAKY---KIVLGVARG 713
              +++  G   +   +   +  +Y   G+L    +K++ +     +    KI   V +G
Sbjct: 58  SPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKG 117

Query: 714 LCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESG-E 772
           L +LH      I H D+K SNI+     +  L +FG         G     +A T +G  
Sbjct: 118 LSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFG-------VSGELVNSLAGTFTGTS 167

Query: 773 FYNA---MKEEMYM---DVYGFGEIILEILTNGRLTNAGSSLQN-KPIDGLLG------- 818
           FY A   ++ + Y    DV+  G  +LE+    R            PI+ LL        
Sbjct: 168 FYMAPERIQGKPYSITSDVWSLGLTLLEV-AQNRFPFPPEGEPPLGPIE-LLSYIVNMPN 225

Query: 819 -EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
            E+ +E   G   S  +E K  +   L   +  P+ RP+  + L+
Sbjct: 226 PELKDEPGNGIKWS--EEFKDFIKQCL--EKD-PTRRPTPWDMLE 265

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 13/100 (13%)

Query: 660 VRHKNLIRLLGFC------YNRHQA--YLLYDYLPN--GNLSEKIRTKRDWAAKYKIVLG 709
           ++H+N++ L+  C      YNR++   YL++++  +    L      K   +   K++  
Sbjct: 68  LKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKM 127

Query: 710 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 749
           +  GL ++H +    I H D+KA+NI+  ++    LA+FG
Sbjct: 128 LLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFG 164

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 19/131 (14%)

Query: 631 TGITVSVKKIEWG------ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY 684
           TG  ++VK++ +          +  +   I  +  ++H+ +++  G   +     +  +Y
Sbjct: 26  TGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEY 85

Query: 685 LPNGNLSEKIRT----KRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
           +P G++ ++++           KY  +I+ GV     +LH +    I H D+K +NI+ D
Sbjct: 86  MPGGSVKDQLKAYGALTETVTRKYTRQILEGVE----YLHSN---MIVHRDIKGANILRD 138

Query: 739 ENMEPHLAEFG 749
                 L +FG
Sbjct: 139 SAGNVKLGDFG 149

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	872
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.98
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.98
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.98
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.98
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.98
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.98
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.98
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.98
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.98
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.98
PHA03210	501	serine/threonine kinase US3; Provisional	99.98
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.98
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.98
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.98
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.98
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.98
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.98
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.98
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.98
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.97
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.97
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.97
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.97
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.97
PLN00009	294	cyclin-dependent kinase A; Provisional	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.97
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.97
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.97
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.97
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.97
PHA02882	294	putative serine/threonine kinase; Provisional	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.97
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.97
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.97
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.97
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.97
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.97
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.97
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.97
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.97
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.97
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.97
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.97
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.96
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.96
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.96
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.96
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.96
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.96
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.96
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.96
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.95
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.95
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.95
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.94
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.94
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.94
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.94
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.93
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.93
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.93
KOG1152	772	consensus Signal transduction serine/threonine kin	99.92
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.92
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.9
PLN00181	793	protein SPA1-RELATED; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.87
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.87
PRK09188	365	serine/threonine protein kinase; Provisional	99.85
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.82
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.81
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.81
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.78
PRK12274	218	serine/threonine protein kinase; Provisional	99.78
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.78
PRK10345	210	hypothetical protein; Provisional	99.78
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.71
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.7
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.7
PRK14879	211	serine/threonine protein kinase; Provisional	99.7
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.7
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.7
smart00090	237	RIO RIO-like kinase.	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.68
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.6
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.59
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.56
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.55
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.54
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.45
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.41
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.4
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.38
PLN03150	623	hypothetical protein; Provisional	99.36
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.29
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
PLN03150	623	hypothetical protein; Provisional	99.07
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.03
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.01
KOG1243	690	consensus Protein kinase [General function predict	99.01
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.81
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.78
KOG3087	229	consensus Serine/threonine protein kinase [General	98.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.72
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.69
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.64
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.6
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.48
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.44
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.38
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
PRK09902	216	hypothetical protein; Provisional	98.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.11
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.09
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.07
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.01
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.99

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-103  Score=974.79  Aligned_cols=847  Identities=37%  Similarity=0.620  Sum_probs=713.8

Q ss_pred             CCcccCCcchhhhcCCCCcEEECCCCCCcccCCcccc-CCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccc
Q 002875            3 GLSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS   81 (872)
Q Consensus         3 ~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~   81 (872)
                      +++|.+|..+.+  ++.|+.|+|++|++++.+|..+. .+++|++|+|++|.+.+..|.  ..+++|++|||++|.+.+.
T Consensus        80 ~i~~~~~~~~~~--l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~  155 (968)
T PLN00113         80 NISGKISSAIFR--LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE  155 (968)
T ss_pred             CccccCChHHhC--CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc
Confidence            457788887777  89999999999999987787655 999999999999999887775  5689999999999999999


Q ss_pred             cCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCC
Q 002875           82 VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNM  161 (872)
Q Consensus        82 ~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l  161 (872)
                      .|..++++++|++|+|++|.+.+.+|..|+++++|++|+|++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  235 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL  235 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEc
Q 002875          162 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL  241 (872)
Q Consensus       162 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  241 (872)
                      ++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus       236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l  315 (968)
T PLN00113        236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL  315 (968)
T ss_pred             CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCC
Q 002875          242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGS  321 (872)
Q Consensus       242 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~  321 (872)
                      ++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+.+|+.|++++|.+.+.+|..++....++.+.+.+|++.+.
T Consensus       316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~  395 (968)
T PLN00113        316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE  395 (968)
T ss_pred             CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCC
Q 002875          322 LSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWS  401 (872)
Q Consensus       322 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~  401 (872)
                      .|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.. .+.+|..+ .
T Consensus       396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~-~~~~p~~~-~  473 (968)
T PLN00113        396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF-FGGLPDSF-G  473 (968)
T ss_pred             CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee-eeecCccc-c
Confidence            999999999999999999999999999999999999999999999999999888999999999999954 34555443 5


Q ss_pred             CcccccccccccccCCCCCC-CCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEE
Q 002875          402 LPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLD  480 (872)
Q Consensus       402 l~~L~~L~l~~~~l~~~~~~-~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  480 (872)
                      .++|+.|++++|.+++..|. +..+++|+.|+++.|.+.+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.||
T Consensus       474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  553 (968)
T PLN00113        474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD  553 (968)
T ss_pred             cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence            68999999999999988775 57899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCccccCCCCCcEEECcCCeeeecCCCCccccccCCccccCCCCCCCCCC----CCCCCCccccccCCCce
Q 002875          481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPL----QPCHASVAILGKGTGKL  556 (872)
Q Consensus       481 Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~l----~~~~~~~~~~~~~~~~~  556 (872)
                      |++|++++.+|..+..+++|+.|++++|++++.+|....+..+...++.|||.+|+.+.    .+|...     ......
T Consensus       554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~-----~~~~~~  628 (968)
T PLN00113        554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV-----RKTPSW  628 (968)
T ss_pred             CCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccc-----ccccee
Confidence            99999999999999999999999999999999999988888888889999999998653    334321     111112


Q ss_pred             eeeehhHHHHHHHHHHHhh-heeeeecCCC---------CCceeeeccC--CCccchhhHHhhcCcchhhhccCCCCCce
Q 002875          557 KFVLLLCAGIVMFIAAALL-GIFFFRRGGK---------GHWKMISFLG--LPQFTANDVLRSFNSTECEEAARPQSAAG  624 (872)
Q Consensus       557 ~~~i~~~~~~~~~~~~~~~-~~~~~rr~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~g~~~~v  624 (872)
                      .++++++++++++++++++ ++++++|++.         +.|+...+..  ...++..++.+.+.  ..+.+|+|+||.|
T Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ig~G~~g~V  706 (968)
T PLN00113        629 WFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDILSSLK--EENVISRGKKGAS  706 (968)
T ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHhhCC--cccEEccCCCeeE
Confidence            2233222222222222222 2222222110         1132211111  11244556666666  7789999999999


Q ss_pred             eeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChHHHhhCCCCHHHH
Q 002875          625 CKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK  703 (872)
Q Consensus       625 ~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~  703 (872)
                      |+|+. .+|+.||||+++....   ...+|++.+++++|||||+++|+|.+++..|+|||||++|+|.++++. .+|.++
T Consensus       707 y~~~~~~~~~~vavK~~~~~~~---~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~-l~~~~~  782 (968)
T PLN00113        707 YKGKSIKNGMQFVVKEINDVNS---IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN-LSWERR  782 (968)
T ss_pred             EEEEECCCCcEEEEEEccCCcc---ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc-CCHHHH
Confidence            99986 6899999999864322   223468889999999999999999999999999999999999999974 789999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccccccCchhhhcccCCcccc
Q 002875          704 YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM  783 (872)
Q Consensus       704 ~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  783 (872)
                      .+|+.|+|+|++|||+.+.++|+|||+||+||+++.++.+++. ||........  ....+...|++||+..+..++.++
T Consensus       783 ~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~--~~~~~t~~y~aPE~~~~~~~~~~s  859 (968)
T PLN00113        783 RKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD--TKCFISSAYVAPETRETKDITEKS  859 (968)
T ss_pred             HHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC--CCccccccccCcccccCCCCCccc
Confidence            9999999999999998878899999999999999999888875 6654332111  111234557788988888899999


Q ss_pred             cchhHHHHHHHHHcCCCCCCCCCCCCC----cccc----ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCC
Q 002875          784 DVYGFGEIILEILTNGRLTNAGSSLQN----KPID----GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP  855 (872)
Q Consensus       784 Dv~S~Gvil~el~tg~~p~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp  855 (872)
                      |||||||++|||+||+.|+........    |...    .......++......+...+.+.++.+++.+||+.||++||
T Consensus       860 Dv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RP  939 (968)
T PLN00113        860 DIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARP  939 (968)
T ss_pred             chhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCc
Confidence            999999999999999999853321111    1000    00111222221111222345566788999999999999999


Q ss_pred             CHHHHHHHHcccCC
Q 002875          856 SMEEALKLLSGLKP  869 (872)
Q Consensus       856 t~~~v~~~L~~~~~  869 (872)
                      ||+||++.|+++..
T Consensus       940 t~~evl~~L~~~~~  953 (968)
T PLN00113        940 CANDVLKTLESASR  953 (968)
T ss_pred             CHHHHHHHHHHhhc
Confidence            99999999998754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.3e-58  Score=570.26  Aligned_cols=518  Identities=35%  Similarity=0.582  Sum_probs=486.5

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccc-cCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGI-QSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ..++.|+|++|.+++..+.+|..+++|++|+|++|++.+.+|..+ ..+++|++|||++|.+++.+|.  +.+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            468999999999999999999999999999999999998777664 5999999999999999987775  5689999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      |++|.+.+..|..|+++++|++|+|++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++.+|++|++++|.+.+
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      .+|..++.+++|++|++++|.+.+..|..+.++++|++|++++|++.+..|.++..+++|+.|++++|.+.+.+|..+..
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEE
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR  336 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~  336 (872)
                      +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.....|+.+++++|++.+..|..+..+++|+.|+
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  386 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI  386 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence            99999999999999999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             cCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccC
Q 002875          337 LEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT  416 (872)
Q Consensus       337 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~  416 (872)
                      +++|.+.+..|..+..+++|+.|++++|++++.+|..+..+++|++|++++| .+.+.+|..++.+++|+.|++++|.+.
T Consensus       387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~~~  465 (968)
T PLN00113        387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQMLSLARNKFF  465 (968)
T ss_pred             CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC-cccCccChhhccCCCCcEEECcCceee
Confidence            9999999999999999999999999999999999999999999999999999 456677888889999999999999999


Q ss_pred             CCCCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccC
Q 002875          417 GNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGS  496 (872)
Q Consensus       417 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  496 (872)
                      +.+|......+|+.|+++.|.+.+.+|..+.++++|++|+|++|++.+.+|..+..+++|++|+|++|.+++.+|..|..
T Consensus       466 ~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  545 (968)
T PLN00113        466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE  545 (968)
T ss_pred             eecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence            99888777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEECcCCeeeecCCCCc-cccccCCccccCCCCCCCCC
Q 002875          497 CSSLTVLNVSFNDISGSIPSGK-VLRLMGSSAYAGNPKLCGAP  538 (872)
Q Consensus       497 l~~L~~L~ls~N~l~~~~p~~~-~~~~~~~~~~~~np~~c~~~  538 (872)
                      +++|++|++++|++++.+|..- ....+....+.+|+..+..|
T Consensus       546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            9999999999999999888642 23345556677888766444

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-49  Score=425.52  Aligned_cols=268  Identities=30%  Similarity=0.538  Sum_probs=221.7

Q ss_pred             ccchhhH---HhhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccchh-HHHHHHHHHHhhccCCCCceeEEEEEe
Q 002875          598 QFTANDV---LRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCY  673 (872)
Q Consensus       598 ~~~~~~~---~~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~-~~~~~~e~~~l~~l~H~niv~l~~~~~  673 (872)
                      .|+..++   ++.|+  ..+.+|+|+||.||||.+++|+.||||++.....+ .++|..|++++++++|||+|+|+|||.
T Consensus        64 ~fs~~el~~AT~~Fs--~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~  141 (361)
T KOG1187|consen   64 SFSYDELRKATNNFS--ESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCL  141 (361)
T ss_pred             eeeHHHHHHHHhCCc--hhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEe
Confidence            4565554   55677  88999999999999999999999999999876554 667999999999999999999999999


Q ss_pred             cCC-eeEEEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccc
Q 002875          674 NRH-QAYLLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF  748 (872)
Q Consensus       674 ~~~-~~~lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~df  748 (872)
                      +.+ +.+||||||++|+|.++|+..    ++|.+|++||.++|+||+|||..+.|+||||||||+|||||+++.+||+||
T Consensus       142 e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDF  221 (361)
T KOG1187|consen  142 EGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDF  221 (361)
T ss_pred             cCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCc
Confidence            988 599999999999999999874    489999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc-cCCCC-c-ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCC-----CCCccc----ccc
Q 002875          749 GFKYLTQL-ADGSF-P-AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSS-----LQNKPI----DGL  816 (872)
Q Consensus       749 g~~~~~~~-~~~~~-~-~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~-----~~~~~~----~~~  816 (872)
                      |+|+.... ..... . .++..|.+||++.....+.|+|||||||+++|++||+++.+....     ...|..    ...
T Consensus       222 GLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~  301 (361)
T KOG1187|consen  222 GLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGK  301 (361)
T ss_pred             cCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcc
Confidence            99976543 22111 1 456668899999888899999999999999999999988764321     111211    124


Q ss_pred             ccccccccccCCCCchH-HHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          817 LGEMYNENEVGSSSSLQ-DEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       817 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++|+.... ..... +.+.++..++.+|++.+|.+||+|.||+++|+.+.
T Consensus       302 ~~eiiD~~l~~-~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~  353 (361)
T KOG1187|consen  302 LREIVDPRLKE-GEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGIL  353 (361)
T ss_pred             hhheeCCCccC-CCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhc
Confidence            55666665321 12222 67788999999999999999999999999997654

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-45  Score=368.52  Aligned_cols=246  Identities=19%  Similarity=0.220  Sum_probs=204.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeec--cchhHHHHHHHHHHhhccCCCCceeEEEEEecCC-eeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEW--GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-QAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~--~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-~~~lv~ey~~~  687 (872)
                      ....||+|..|+|||+.+ ++++.+|+|.+..  +..-.+++.+|++++++.+||+||++||+|+.++ +.+|+||||.+
T Consensus        83 ~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDg  162 (364)
T KOG0581|consen   83 RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDG  162 (364)
T ss_pred             hhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCC
Confidence            677899999999999986 6899999999943  3445778899999999999999999999999988 59999999999


Q ss_pred             CChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          688 GNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       688 g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      |||++.+....  +....-+|+.+|++||.|||+ +   +||||||||+|||++..|.+||+|||.++...........+
T Consensus       163 GSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~---~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tfvG  239 (364)
T KOG0581|consen  163 GSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEER---KIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTFVG  239 (364)
T ss_pred             CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcc---CeeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccccc
Confidence            99999998643  555567999999999999996 5   99999999999999999999999999998765544334446


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|++||.+.+..|+.++||||||+.++|+++|+-|+..... ......+.+..+.++.++..+..  ...+++.+++.
T Consensus       240 T~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~-~~~~~~~Ll~~Iv~~ppP~lP~~--~fS~ef~~FV~  316 (364)
T KOG0581|consen  240 TSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNP-PYLDIFELLCAIVDEPPPRLPEG--EFSPEFRSFVS  316 (364)
T ss_pred             cccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCC-CCCCHHHHHHHHhcCCCCCCCcc--cCCHHHHHHHH
Confidence            6778899999999999999999999999999999999876421 11123345556666543333332  35677889999


Q ss_pred             HcccCCCCCCCCHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +|+++||.+||+++|+++|
T Consensus       317 ~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  317 CCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             HHhcCCcccCCCHHHHhcC
Confidence            9999999999999999865

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-44  Score=379.67  Aligned_cols=246  Identities=24%  Similarity=0.361  Sum_probs=203.7

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ....||+|.||+|+.|.......||||.++.+....+.|.+|+++|++++|+|||+++|+|..++.+|||||||+.|+|.
T Consensus       210 l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl  289 (468)
T KOG0197|consen  210 LIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLL  289 (468)
T ss_pred             HHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHH
Confidence            67889999999999999977779999999988888899999999999999999999999999988999999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC----Ccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS----FPA  763 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~----~~~  763 (872)
                      ++|+.    .....+-+.++.|||+||+||+++   ++|||||.++|||++++..+||+|||+|+........    ...
T Consensus       290 ~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kf  366 (468)
T KOG0197|consen  290 DYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKF  366 (468)
T ss_pred             HHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCC
Confidence            99986    236678889999999999999999   9999999999999999999999999999954433211    112


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      .+.|| +||.+....++.|||||||||+||||+|-++.+++..+..+.     +..+-.....+.++.   ++..+.++|
T Consensus       367 PIkWt-APEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev-----~~~le~GyRlp~P~~---CP~~vY~lM  437 (468)
T KOG0197|consen  367 PIKWT-APEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEV-----LELLERGYRLPRPEG---CPDEVYELM  437 (468)
T ss_pred             Cceec-CHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHH-----HHHHhccCcCCCCCC---CCHHHHHHH
Confidence            45665 558888889999999999999999999988877766544321     111111121222333   344677899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ..||+.+|++|||++.+...++++..
T Consensus       438 ~~CW~~~P~~RPtF~~L~~~l~~~~~  463 (468)
T KOG0197|consen  438 KSCWHEDPEDRPTFETLREVLEDFFT  463 (468)
T ss_pred             HHHhhCCcccCCCHHHHHHHHHHhhh
Confidence            99999999999999999998887654

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-44  Score=379.69  Aligned_cols=246  Identities=22%  Similarity=0.258  Sum_probs=197.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCC-eeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-QAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||+||+|....-..||||++.....   ..+.|.+|+.+|.+++|||||+++|+|.++. ..++|||||++
T Consensus        45 ~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~  124 (362)
T KOG0192|consen   45 IEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPG  124 (362)
T ss_pred             hhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCC
Confidence            4556999999999999985444499999976432   2568999999999999999999999999887 79999999999


Q ss_pred             CChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCC-cccCCCCCCCeeeCCCC-CeeEcccccccccccc--CC
Q 002875          688 GNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPA-IPHGDLKASNIVFDENM-EPHLAEFGFKYLTQLA--DG  759 (872)
Q Consensus       688 g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~-i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~~--~~  759 (872)
                      |+|.++++.    ..++..+++++.|||+||.|||++   + ||||||||+|||++.++ .+||+|||+++.....  ..
T Consensus       125 GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~  201 (362)
T KOG0192|consen  125 GSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSM  201 (362)
T ss_pred             CcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCccceeeccccccc
Confidence            999999965    568999999999999999999998   6 99999999999999997 9999999999876542  22


Q ss_pred             CCcccccccCchhhhc--ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          760 SFPAKIAWTESGEFYN--AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~--~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      ....++..+++||++.  ...++.|+|||||||++|||+||+.||.+-...+      ....+......+  +.......
T Consensus       202 ~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~------~~~~v~~~~~Rp--~~p~~~~~  273 (362)
T KOG0192|consen  202 TSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQ------VASAVVVGGLRP--PIPKECPP  273 (362)
T ss_pred             cCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhcCCCC--CCCccCCH
Confidence            2234556677889888  5689999999999999999999999997544311      111111111111  11112445


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .+..++..||..||++||++.|++..|+.+.
T Consensus       274 ~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~  304 (362)
T KOG0192|consen  274 HLSSLMERCWLVDPSRRPSFLEIVSRLESIM  304 (362)
T ss_pred             HHHHHHHHhCCCCCCcCCCHHHHHHHHHHHH
Confidence            6778888899999999999999999998653

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-43  Score=356.89  Aligned_cols=245  Identities=17%  Similarity=0.195  Sum_probs=198.1

Q ss_pred             chhhhccCCCCCceeeee-cCCCcEEEEEEeeccch--------hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          611 TECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGAT--------RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~--------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      ...+.+|.|+||.|-+|. ..+|+.||||++++...        .....++|+++|++++|||||++++++..++..|||
T Consensus       175 ii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmV  254 (475)
T KOG0615|consen  175 IISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMV  254 (475)
T ss_pred             EeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEE
Confidence            478899999999999997 57899999999976321        123457999999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC---CCeeEccccccccccc
Q 002875          682 YDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN---MEPHLAEFGFKYLTQL  756 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~---~~~ki~dfg~~~~~~~  756 (872)
                      |||++||+|.+.+-..  .....-+.+++|++.|+.|||+.   ||+||||||+|||+..+   ..+||+|||+|+....
T Consensus       255 lE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~  331 (475)
T KOG0615|consen  255 LEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGE  331 (475)
T ss_pred             EEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEecccchhhcccc
Confidence            9999999999998653  34555678999999999999999   99999999999999765   6799999999998653


Q ss_pred             cC-CCCcccccccCchhhhcccC---CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          757 AD-GSFPAKIAWTESGEFYNAMK---EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       757 ~~-~~~~~~~~~~~~~e~~~~~~---~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                      .. ..+.+|++.|.+||+.....   +..++|+||+|||+|-++||..||.+.....     ....++........++.+
T Consensus       332 ~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~-----sl~eQI~~G~y~f~p~~w  406 (475)
T KOG0615|consen  332 GSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDP-----SLKEQILKGRYAFGPLQW  406 (475)
T ss_pred             ceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCc-----cHHHHHhcCcccccChhh
Confidence            22 12334677788889876543   3447799999999999999999998654221     112233333333345566


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+..++.++++.++|..||++|||++|++++
T Consensus       407 ~~Iseea~dlI~~mL~VdP~~R~s~~eaL~h  437 (475)
T KOG0615|consen  407 DRISEEALDLINWMLVVDPENRPSADEALNH  437 (475)
T ss_pred             hhhhHHHHHHHHHhhEeCcccCcCHHHHhcC
Confidence            7788899999999999999999999999865

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-43  Score=353.61  Aligned_cols=191  Identities=24%  Similarity=0.308  Sum_probs=169.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ....||+|+||+||||+. .+|..||||.+.+.   .+..+.+..||.+|+.++|||||++++++++++..|||||||.|
T Consensus        14 ~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~g   93 (429)
T KOG0595|consen   14 LSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNG   93 (429)
T ss_pred             ehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCC
Confidence            667799999999999995 67899999999754   33466788999999999999999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC------CCeeEccccccccccccCC
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN------MEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~------~~~ki~dfg~~~~~~~~~~  759 (872)
                      |||.++++++  .+....+.++.|+|.|+++||+.   +||||||||+||||+..      -.+||+|||+|+.......
T Consensus        94 GDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~  170 (429)
T KOG0595|consen   94 GDLSDYIRRRGRLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSM  170 (429)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhH
Confidence            9999999875  57778889999999999999999   99999999999999764      4689999999998764332


Q ss_pred             -CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCC
Q 002875          760 -SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG  805 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~  805 (872)
                       ...+|.+.|++||+....+|+.|+|+||.|+|+||++||+.||...
T Consensus       171 a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  171 AETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             HHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence             2344778899999999999999999999999999999999999743

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.7e-43  Score=369.40  Aligned_cols=241  Identities=19%  Similarity=0.227  Sum_probs=201.4

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeec----cchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEW----GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~----~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      |.....+|+|+|+.+|+++. .+|+.||+|++.+    .....+...+||++.++++|||||+++++|++.+.+|||.|+
T Consensus        20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLEL   99 (592)
T KOG0575|consen   20 YKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLEL   99 (592)
T ss_pred             eeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEe
Confidence            34889999999999999997 9999999999976    345577889999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc--CCC
Q 002875          685 LPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA--DGS  760 (872)
Q Consensus       685 ~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~--~~~  760 (872)
                      |++|+|.+++++  ..+..+...+++||+.||.|||++   +|+|||||-.|++|+++..+||+|||+|......  ...
T Consensus       100 C~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~  176 (592)
T KOG0575|consen  100 CHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKK  176 (592)
T ss_pred             cCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecCcccccc
Confidence            999999999984  457788899999999999999999   9999999999999999999999999999766533  233


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      +.+|++.|-+||+......+..+||||+|||+|.|++|++||......      +.+..+......    .......++.
T Consensus       177 TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vk------ety~~Ik~~~Y~----~P~~ls~~A~  246 (592)
T KOG0575|consen  177 TLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVK------ETYNKIKLNEYS----MPSHLSAEAK  246 (592)
T ss_pred             eecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHH------HHHHHHHhcCcc----cccccCHHHH
Confidence            455888899999999888999999999999999999999999743211      111111111101    1113345677


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.++|+.||++|||+++|+++
T Consensus       247 dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  247 DLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             HHHHHHhcCCcccCCCHHHHhcC
Confidence            88899999999999999999864

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=8.7e-43  Score=336.38  Aligned_cols=248  Identities=19%  Similarity=0.277  Sum_probs=193.9

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      +...++|+|+||+|||++. .+|+.||||++.....   -.+...+||+++++++|||+|.++++|......+||+|||+
T Consensus         5 E~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~d   84 (396)
T KOG0593|consen    5 EKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCD   84 (396)
T ss_pred             hhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecc
Confidence            3778899999999999996 6799999999964332   36678899999999999999999999999999999999998


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCc-
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFP-  762 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~-  762 (872)
                      . ++.+-+..   ..+.....++++|+++|+.|+|++   ++|||||||+|||++.++.+|++|||+|+........+. 
T Consensus        85 h-TvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTD  160 (396)
T KOG0593|consen   85 H-TVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTD  160 (396)
T ss_pred             h-HHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcCCcchhhh
Confidence            7 55555543   456777889999999999999999   999999999999999999999999999987764332222 


Q ss_pred             -ccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-cc-----------------cccccccc
Q 002875          763 -AKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-ID-----------------GLLGEMYN  822 (872)
Q Consensus       763 -~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-~~-----------------~~~~~~~~  822 (872)
                       ..+.||.+||...+ ..|+..+||||.||++.||+||.+.|++..+..... +.                 ..+..+.-
T Consensus       161 YVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~l  240 (396)
T KOG0593|consen  161 YVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRL  240 (396)
T ss_pred             hhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeec
Confidence             26789999998765 689999999999999999999988887554321100 00                 11111111


Q ss_pred             ccccCCCCc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 ENEVGSSSS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~~~~~~~~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +. +..++.    .+....-.++++..|++.||++|++.+|++.+
T Consensus       241 P~-~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  241 PE-PEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             CC-CCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcC
Confidence            11 111111    13344567899999999999999999998753

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.6e-43  Score=334.84  Aligned_cols=239  Identities=18%  Similarity=0.226  Sum_probs=192.1

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEE-EEecCCe-eEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLG-FCYNRHQ-AYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~-~~~~~~~-~~lv~ey~  685 (872)
                      +.++||+|+||.|||+. +.+|+.||.|.++-+   .+..+....||.+++.++|||||++++ -+.++.+ .+||||||
T Consensus        23 Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c  102 (375)
T KOG0591|consen   23 ILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELC  102 (375)
T ss_pred             HHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhh
Confidence            89999999999999997 689999999999754   345667889999999999999999998 4455555 89999999


Q ss_pred             CCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCC--cccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          686 PNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPA--IPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       686 ~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~--i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      ..|||...|+.      ..+....++++.|++.||.++|+. .|.  |+||||||.||+|+.+|.+|++|||+++.....
T Consensus       103 ~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~  181 (375)
T KOG0591|consen  103 DAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSK  181 (375)
T ss_pred             cccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcc-ccccceeeccCcchheEEcCCCceeeccchhHhHhcch
Confidence            99999999864      336778899999999999999983 335  999999999999999999999999999876544


Q ss_pred             CCC--CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch-HH
Q 002875          758 DGS--FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL-QD  834 (872)
Q Consensus       758 ~~~--~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  834 (872)
                      ...  .-.+++||++||.+...+|+.++||||+||++|||+.-++||.+..-.      .....+-+...   ++.+ .-
T Consensus       182 ~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~------~L~~KI~qgd~---~~~p~~~  252 (375)
T KOG0591|consen  182 TTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLL------SLCKKIEQGDY---PPLPDEH  252 (375)
T ss_pred             hHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHH------HHHHHHHcCCC---CCCcHHH
Confidence            322  234889999999999999999999999999999999999999865211      11111111111   1111 12


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEA  860 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v  860 (872)
                      -+.++.+++..|+..||++||+.-..
T Consensus       253 YS~~l~~li~~ci~vd~~~RP~t~~~  278 (375)
T KOG0591|consen  253 YSTDLRELINMCIAVDPEQRPDTVPY  278 (375)
T ss_pred             hhhHHHHHHHHHccCCcccCCCcchH
Confidence            34567788888999999999984333

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-40  Score=343.69  Aligned_cols=245  Identities=20%  Similarity=0.276  Sum_probs=195.0

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||||+ ..+|+.||+|++....   .......+||.+|++++|||||++.+...+.  +.+|||+|||
T Consensus       121 ki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYM  200 (560)
T KOG0600|consen  121 KIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYM  200 (560)
T ss_pred             HHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecc
Confidence            88999999999999998 5899999999997643   2356778999999999999999999998876  6899999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      +. ||..++..   +.+..+.+.+++|++.||+|+|+.   +|+|||||++|||||.+|.+||+|||+|+++......  
T Consensus       201 dh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~  276 (560)
T KOG0600|consen  201 DH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPY  276 (560)
T ss_pred             cc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeeccCCCCccc
Confidence            87 99999877   457889999999999999999999   9999999999999999999999999999976544322  


Q ss_pred             -CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCC---------------Ccccccccc--ccc
Q 002875          761 -FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ---------------NKPIDGLLG--EMY  821 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~---------------~~~~~~~~~--~~~  821 (872)
                       ...-+-||.+||..-+ ..|+..+|+||.|||+.||++|++.+.+.....               .|. ...+.  ..+
T Consensus       277 T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~-~~kLP~~~~~  355 (560)
T KOG0600|consen  277 TSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWP-VSKLPHATIF  355 (560)
T ss_pred             ccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccc-cccCCccccc
Confidence             2235679999997754 579999999999999999999998887543211               122 10111  111


Q ss_pred             cccccCC----CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          822 NENEVGS----SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       822 ~~~~~~~----~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      .+. ...    .+........+++++..+|..||++|.|+.++++
T Consensus       356 kp~-~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  356 KPQ-QPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             CCC-CcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence            111 000    1112233456789999999999999999999874

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.5e-40  Score=315.81  Aligned_cols=250  Identities=20%  Similarity=0.269  Sum_probs=198.2

Q ss_pred             cchhhhccCCCCCceeeee-cCCCcEEEEEEeeccchh---HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          610 STECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      |...+.+|+|+||.||||. ..+|+.||||+++.+...   .....+||+.++.++||||+.++++|-+.+...||+|||
T Consensus         4 Y~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm   83 (318)
T KOG0659|consen    4 YEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFM   83 (318)
T ss_pred             hhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEec
Confidence            3478899999999999998 478999999999876443   456788999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCc
Q 002875          686 PNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFP  762 (872)
Q Consensus       686 ~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~  762 (872)
                      +. ||+..|+..   ...++.+.++.++.+|++|+|++   .|+|||+||.|+|++++|.+||+|||+|+..........
T Consensus        84 ~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~  159 (318)
T KOG0659|consen   84 PT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQT  159 (318)
T ss_pred             cc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCCCcccc
Confidence            87 999999874   36678899999999999999999   999999999999999999999999999998765443322


Q ss_pred             --ccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC---------------Ccccccccccccccc
Q 002875          763 --AKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ---------------NKPIDGLLGEMYNEN  824 (872)
Q Consensus       763 --~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~---------------~~~~~~~~~~~~~~~  824 (872)
                        ..+.||.+||... ...|+..+||||.|||+.||+-|.+.|.+..+..               .|+....+.+...-.
T Consensus       160 ~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~  239 (318)
T KOG0659|consen  160 HQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQ  239 (318)
T ss_pred             cceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHh
Confidence              4678999998664 5679999999999999999999766555433221               222221111111100


Q ss_pred             ---ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 ---EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ---~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                         .............+.++++..++..||.+|+|+.|++++
T Consensus       240 ~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  240 QFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             cCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence               000011223455677999999999999999999999865

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-41  Score=348.21  Aligned_cols=254  Identities=17%  Similarity=0.218  Sum_probs=199.2

Q ss_pred             HHhhcCcchhhhccCCCCCceeeee-cCCCcEEEEEEeeccchh--HHHHHHHHHHhhccC-CCCceeEEEEEecCC-ee
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGATR--IKIVSEFITRIGTVR-HKNLIRLLGFCYNRH-QA  678 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~~--~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~-~~  678 (872)
                      +.+.|.  ..+++|.|+||.||+|+ ..+|..||||+|+..-..  ...-.+|+..|+++. |||||++.+++.+.+ ..
T Consensus         8 ~m~RY~--~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L   85 (538)
T KOG0661|consen    8 FMDRYT--VIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRIL   85 (538)
T ss_pred             HHHHHH--HHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceE
Confidence            344555  89999999999999998 578999999999865433  334478999999999 999999999999887 99


Q ss_pred             EEEEcccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      |+|||||+- +|.+.++.+   .+......|+.||.+||+|+|.+   |+.|||+||+|||+.....+||+|||+|+...
T Consensus        86 ~fVfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev~  161 (538)
T KOG0661|consen   86 YFVFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREVR  161 (538)
T ss_pred             eeeHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEecccccccccc
Confidence            999999975 999999764   36778899999999999999999   99999999999999988899999999999876


Q ss_pred             ccCCCCc-ccccccCchhhh-cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-ccccccc------------
Q 002875          756 LADGSFP-AKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DGLLGEM------------  820 (872)
Q Consensus       756 ~~~~~~~-~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~~~~~~------------  820 (872)
                      .....+. ..+.||.+||+. ....|+.++||||+|||++|+.+-++.|++......... .+.++..            
T Consensus       162 SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La  241 (538)
T KOG0661|consen  162 SKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLA  241 (538)
T ss_pred             cCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHH
Confidence            5443332 367899999976 456789999999999999999999988886543221100 0000000            


Q ss_pred             ------cccc-ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 ------YNEN-EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ------~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                            .... +.....-......++++++.+|++.||.+|||++|++++
T Consensus       242 ~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  242 SAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             HHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence                  0000 000011113355678899999999999999999999876

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-41  Score=370.77  Aligned_cols=246  Identities=22%  Similarity=0.283  Sum_probs=195.6

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+++|+|+||+||+|..      ++.+.||||.++....  ...+|++|+++++.++|||||+|+|+|..++..|+|+|
T Consensus       490 ~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFE  569 (774)
T KOG1026|consen  490 FKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFE  569 (774)
T ss_pred             ehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEE
Confidence            568899999999999984      3456899999986433  57899999999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC----------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          684 YLPNGNLSEKIRTK----------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       684 y~~~g~L~~~l~~~----------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      ||..|||.++|+..                ++..+.+.||.|||.||+||-++   .+|||||..+|+|+.++..+||+|
T Consensus       570 Ym~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge~l~VKIsD  646 (774)
T KOG1026|consen  570 YMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGENLVVKISD  646 (774)
T ss_pred             ecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceeccceEEEecc
Confidence            99999999999641                34567889999999999999999   999999999999999999999999


Q ss_pred             ccccccccccCC-----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccc
Q 002875          748 FGFKYLTQLADG-----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN  822 (872)
Q Consensus       748 fg~~~~~~~~~~-----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  822 (872)
                      ||+++..-..+-     .....+.| +|||.+.+.+++++|||||||||+||++|-+.-++.+.+.++..     ..+.+
T Consensus       647 fGLsRdiYssDYYk~~~~t~lPIRW-MppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVI-----e~i~~  720 (774)
T KOG1026|consen  647 FGLSRDIYSSDYYKVRGNTLLPIRW-MPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVI-----ECIRA  720 (774)
T ss_pred             cccchhhhhhhhhcccCCceeeeec-CCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHH-----HHHHc
Confidence            999975432221     11224554 56788888899999999999999999999554333333332211     11111


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ......+   +.++.++.++|..||+..|++||+++||-..|+....
T Consensus       721 g~lL~~P---e~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~  764 (774)
T KOG1026|consen  721 GQLLSCP---ENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQ  764 (774)
T ss_pred             CCcccCC---CCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHh
Confidence            1111112   3445678899999999999999999999999987644

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-40  Score=347.40  Aligned_cols=242  Identities=16%  Similarity=0.223  Sum_probs=203.5

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ...+||+|+.|.||.|. ..+++.||||++....+ .++.+.+|+.+|+..+|+|||++++.|...++.+.|||||++|+
T Consensus       277 ~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggs  356 (550)
T KOG0578|consen  277 DFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGS  356 (550)
T ss_pred             chhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCc
Confidence            77899999999999997 57899999999987655 46677899999999999999999999998899999999999999


Q ss_pred             hHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCccccc
Q 002875          690 LSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPAKIA  766 (872)
Q Consensus       690 L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~~~~  766 (872)
                      |.|.+.. ..+..+...|++++++||+|||..   +|+|||||.+|||++.++.+||+||||+.......  .....+++
T Consensus       357 LTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTP  433 (550)
T KOG0578|consen  357 LTDVVTKTRMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTP  433 (550)
T ss_pred             hhhhhhcccccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCC
Confidence            9999876 468889999999999999999999   99999999999999999999999999986554433  23344889


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      ||++||++....|++++||||+|++++||+-|.+|+..+.........      .... .+.-...+.....+.+++.+|
T Consensus       434 YWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLI------a~ng-~P~lk~~~klS~~~kdFL~~c  506 (550)
T KOG0578|consen  434 YWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLI------ATNG-TPKLKNPEKLSPELKDFLDRC  506 (550)
T ss_pred             CccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHH------hhcC-CCCcCCccccCHHHHHHHHHH
Confidence            999999999999999999999999999999999999865543321111      1111 111222344556788999999


Q ss_pred             ccCCCCCCCCHHHHHHH
Q 002875          847 TRSTPSDRPSMEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~  863 (872)
                      |+.||++||+++|++++
T Consensus       507 L~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  507 LVVDVEQRASAKELLEH  523 (550)
T ss_pred             hhcchhcCCCHHHHhcC
Confidence            99999999999999875

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-40  Score=336.51  Aligned_cols=244  Identities=20%  Similarity=0.222  Sum_probs=189.7

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCC--eeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH--QAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||.||.+... +|...|||.+.... ...+.+.+|+.+|++++|||||+++|......  .+++.|||+++
T Consensus        21 ~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~  100 (313)
T KOG0198|consen   21 KGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPG  100 (313)
T ss_pred             hhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCC
Confidence            6789999999999999975 49999999997542 12566899999999999999999999865544  68999999999


Q ss_pred             CChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccc-----cC
Q 002875          688 GNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQL-----AD  758 (872)
Q Consensus       688 g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~-----~~  758 (872)
                      |+|.+++.+.   .+.....++..||++||+|||++   +||||||||+|||++. ++.+||+|||+++....     ..
T Consensus       101 GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~  177 (313)
T KOG0198|consen  101 GSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDS  177 (313)
T ss_pred             CcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCccccccccccccccc
Confidence            9999999864   47888899999999999999999   9999999999999999 79999999999876552     11


Q ss_pred             CCCcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          759 GSFPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      .....+++++++||+.... ....++||||+||++.||+||++||........+..    ....... .  +........
T Consensus       178 ~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~----~ig~~~~-~--P~ip~~ls~  250 (313)
T KOG0198|consen  178 ELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALL----LIGREDS-L--PEIPDSLSD  250 (313)
T ss_pred             cccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHH----HHhccCC-C--CCCCcccCH
Confidence            1122356677888888742 333589999999999999999888875311111111    0111110 0  111122445


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      +..+++.+|++.||++|||+++++++--
T Consensus       251 ~a~~Fl~~C~~~~p~~Rpta~eLL~hpf  278 (313)
T KOG0198|consen  251 EAKDFLRKCFKRDPEKRPTAEELLEHPF  278 (313)
T ss_pred             HHHHHHHHHhhcCcccCcCHHHHhhChh
Confidence            6778899999999999999999998754

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-40  Score=328.51  Aligned_cols=235  Identities=16%  Similarity=0.156  Sum_probs=191.0

Q ss_pred             hcCcchhhhccCCCCCceeeee-cCCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      .|.  ..+.||+|+||+||.+. .++|+.+|+|++++..    .+.+....|..++.+++||.||+++-.|++.+..|+|
T Consensus        26 dF~--~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   26 DFE--ILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hee--eeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            366  89999999999999987 4789999999998642    3456678899999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhCCCC--HHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc--
Q 002875          682 YDYLPNGNLSEKIRTKRD--WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA--  757 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~~~--~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~--  757 (872)
                      +||+.||+|+.+|++...  ......++.+|+.||.|||+.   +|||||+||+|||||.+|+++++|||+++..-..  
T Consensus       104 ld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~  180 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD  180 (357)
T ss_pred             EeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchhcccCCC
Confidence            999999999999997654  445567899999999999999   9999999999999999999999999999854322  


Q ss_pred             CCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          758 DGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       758 ~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      .+...+|+..|++||+.....++..+|.||+||++|||+||.+||.+.+...      +...+.....+..+..   ...
T Consensus       181 ~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~------~~~~I~~~k~~~~p~~---ls~  251 (357)
T KOG0598|consen  181 ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKK------MYDKILKGKLPLPPGY---LSE  251 (357)
T ss_pred             ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHH------HHHHHhcCcCCCCCcc---CCH
Confidence            2333457778999999999899999999999999999999999998655321      1111111110111111   234


Q ss_pred             HHHHHHHHcccCCCCCCC
Q 002875          838 LVLDVALLCTRSTPSDRP  855 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rp  855 (872)
                      ++.+++...++.||++|-
T Consensus       252 ~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  252 EARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             HHHHHHHHHhccCHHHhc
Confidence            577888889999999995

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-40  Score=356.18  Aligned_cols=243  Identities=21%  Similarity=0.319  Sum_probs=197.0

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      +.++||.|.||+||+|.++    ....||||.++.+.  +++..|..|..+|++++||||++|.|+.......+||+|||
T Consensus       633 Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyM  712 (996)
T KOG0196|consen  633 IEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYM  712 (996)
T ss_pred             EEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhh
Confidence            5678999999999999973    24589999999864  45778999999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-C
Q 002875          686 PNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-F  761 (872)
Q Consensus       686 ~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-~  761 (872)
                      +||+|+.+|+..   ..+-+...+.++||.||.||-..   +.|||||.++|||++.+..+||+|||+++...+.... .
T Consensus       713 ENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~y  789 (996)
T KOG0196|consen  713 ENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAY  789 (996)
T ss_pred             hCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeecccCCCccc
Confidence            999999999874   35677888999999999999998   9999999999999999999999999999876544321 1


Q ss_pred             c-----ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          762 P-----AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       762 ~-----~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      .     ..+.|+ +||.+.+.+++.++|||||||||||.++ |.+|+++-.. +     +.+..+-+....+.+.   ++
T Consensus       790 tt~GGKIPiRWT-APEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSN-Q-----dVIkaIe~gyRLPpPm---DC  859 (996)
T KOG0196|consen  790 TTLGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN-Q-----DVIKAIEQGYRLPPPM---DC  859 (996)
T ss_pred             cccCCccceeec-ChhHhhhcccCchhhccccceEEEEecccCCCcccccch-H-----HHHHHHHhccCCCCCC---CC
Confidence            1     135555 5688888899999999999999999876 6678774321 1     1222222222222222   33


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +..+.++|+.||++|-.+||+++|++.+|.++
T Consensus       860 P~aL~qLMldCWqkdR~~RP~F~qiV~~lDkl  891 (996)
T KOG0196|consen  860 PAALYQLMLDCWQKDRNRRPKFAQIVSTLDKL  891 (996)
T ss_pred             cHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence            45677899999999999999999999999876

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-39  Score=336.70  Aligned_cols=239  Identities=23%  Similarity=0.286  Sum_probs=190.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      +.+-+|.|+-|+||.|.+ .+++||||+++      +.-..+|+-|++++||||+.|.|+|.....+|||||||+.|-|.
T Consensus       128 ELeWlGSGaQGAVF~Grl-~netVAVKKV~------elkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~  200 (904)
T KOG4721|consen  128 ELEWLGSGAQGAVFLGRL-HNETVAVKKVR------ELKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLY  200 (904)
T ss_pred             hhhhhccCcccceeeeec-cCceehhHHHh------hhhhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHH
Confidence            677899999999999998 57899999985      22344688899999999999999999999999999999999999


Q ss_pred             HHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccccc
Q 002875          692 EKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIAW  767 (872)
Q Consensus       692 ~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~~  767 (872)
                      ++|+...  .......|..+||.||.|||.+   .|||||||+-||||..+..+||+|||-++......+  ++.++++ 
T Consensus       201 ~VLka~~~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVa-  276 (904)
T KOG4721|consen  201 EVLKAGRPITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVA-  276 (904)
T ss_pred             HHHhccCccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhHh-
Confidence            9998754  3344568999999999999999   999999999999999999999999999876544322  2334555 


Q ss_pred             cCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcc
Q 002875          768 TESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCT  847 (872)
Q Consensus       768 ~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  847 (872)
                      +++||++...+.+.|+||||||||+|||+||..|+.+-+......  +.-...+   ..+.+..+++   -+.-++.+||
T Consensus       277 WMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIw--GVGsNsL---~LpvPstcP~---GfklL~Kqcw  348 (904)
T KOG4721|consen  277 WMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIW--GVGSNSL---HLPVPSTCPD---GFKLLLKQCW  348 (904)
T ss_pred             hhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEE--eccCCcc---cccCcccCch---HHHHHHHHHH
Confidence            456799999999999999999999999999999886433221110  1111111   1222333333   4556778899


Q ss_pred             cCCCCCCCCHHHHHHHHcccCC
Q 002875          848 RSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       848 ~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      +..|..||++.+++.+|.-..+
T Consensus       349 ~sKpRNRPSFrqil~HldIa~p  370 (904)
T KOG4721|consen  349 NSKPRNRPSFRQILLHLDIASP  370 (904)
T ss_pred             hcCCCCCccHHHHHHHHhhcCH
Confidence            9999999999999999975544

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-39  Score=335.49  Aligned_cols=241  Identities=19%  Similarity=0.207  Sum_probs=194.9

Q ss_pred             cCcchhhhccCCCCCceeeee-cCCCcEEEEEEeecc----chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEE
Q 002875          608 FNSTECEEAARPQSAAGCKAV-LPTGITVSVKKIEWG----ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv  681 (872)
                      |.  +.+.+|+|+|+.||+|+ .+++++||||++.+.    ....+....|-..|.++ .||-||+|+-.|+++...|+|
T Consensus        75 F~--Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFv  152 (604)
T KOG0592|consen   75 FK--FGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFV  152 (604)
T ss_pred             cc--hhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEE
Confidence            55  88999999999999998 578999999999753    23455677788888888 899999999999999999999


Q ss_pred             EcccCCCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          682 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      +||+++|+|.++|++.+  +....+.++.+|+.|++|||++   |||||||||+|||||+++++||+|||-|+.......
T Consensus       153 Le~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~  229 (604)
T KOG0592|consen  153 LEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQK  229 (604)
T ss_pred             EEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeeccccccCChhhc
Confidence            99999999999999865  4455578999999999999999   999999999999999999999999999886532211


Q ss_pred             ---------------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc
Q 002875          760 ---------------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN  824 (872)
Q Consensus       760 ---------------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  824 (872)
                                     ..-.|++.|.+||+......+..+|+|+||||+|.|++|++||.++.....      +..+..-.
T Consensus       230 ~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Neyli------FqkI~~l~  303 (604)
T KOG0592|consen  230 SQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLI------FQKIQALD  303 (604)
T ss_pred             cccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHH------HHHHHHhc
Confidence                           112367788899999999999999999999999999999999987653221      11111111


Q ss_pred             ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ...++.   ..+.+.+++.+.|..||.+|+|++|+-+|
T Consensus       304 -y~fp~~---fp~~a~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  304 -YEFPEG---FPEDARDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             -ccCCCC---CCHHHHHHHHHHHccCccccccHHHHhhC
Confidence             001111   12456788888999999999999998765

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-38  Score=320.43  Aligned_cols=246  Identities=20%  Similarity=0.219  Sum_probs=192.8

Q ss_pred             cchhhhccCCCCCceeeee-cCCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          610 STECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      |+..++||.|..+.||+|. .+.++.||||++..++  ...+.+++|+..|+.++|||||+++..|..+...|+||.||.
T Consensus        28 YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa  107 (516)
T KOG0582|consen   28 YELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMA  107 (516)
T ss_pred             eeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhc
Confidence            4478899999999999998 6889999999997643  346789999999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          687 NGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       687 ~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      +||+.+.++..    .+......|.+++++||.|||++   |-||||||+.|||||++|.+||+|||.+-.......   
T Consensus       108 ~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~  184 (516)
T KOG0582|consen  108 GGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQV  184 (516)
T ss_pred             CCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCceeeeeecccCceee
Confidence            99999999763    45566778999999999999999   999999999999999999999999998643322111   


Q ss_pred             ---CCcccccccCchhhhc--ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc-----CCC
Q 002875          760 ---SFPAKIAWTESGEFYN--AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV-----GSS  829 (872)
Q Consensus       760 ---~~~~~~~~~~~~e~~~--~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  829 (872)
                         .+..+++++++||+..  ...|+.|+||||||+...||++|..||..-....     ..+...-...+.     ...
T Consensus       185 ~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmk-----vLl~tLqn~pp~~~t~~~~~  259 (516)
T KOG0582|consen  185 TRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMK-----VLLLTLQNDPPTLLTSGLDK  259 (516)
T ss_pred             EeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHH-----HHHHHhcCCCCCcccccCCh
Confidence               1223556677778743  3479999999999999999999999997432211     111111111110     001


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +........+.+++..|++.||++|||+++++++
T Consensus       260 d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  260 DEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             HHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence            1112334578899999999999999999999864

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=4.3e-39  Score=334.51  Aligned_cols=241  Identities=16%  Similarity=0.196  Sum_probs=198.6

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      .|.  ..+.||+|.||.||||+. .+++.||+|.+.+..   ++.+.+++|++++++++|||||.++++|++..++++|.
T Consensus         3 ~yh--v~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVt   80 (808)
T KOG0597|consen    3 QYH--VYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVT   80 (808)
T ss_pred             chh--HHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEe
Confidence            355  889999999999999985 678899999997643   34566899999999999999999999999999999999


Q ss_pred             cccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          683 DYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      |||.| +|+.++..  .++.++...|++++..||.|||+.   +|+|||+||+|||++..+.+|++|||+|+.+..... 
T Consensus        81 e~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~v  156 (808)
T KOG0597|consen   81 EYAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSV  156 (808)
T ss_pred             hhhhh-hHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhcccCcee
Confidence            99976 99999976  567888899999999999999999   999999999999999999999999999987654322 


Q ss_pred             -CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          760 -SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       +...+++.|++||.+.+..|+..+|.||+|||+||+++|++||+....      .....-+..+. +..+.   .....
T Consensus       157 ltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si------~~Lv~~I~~d~-v~~p~---~~S~~  226 (808)
T KOG0597|consen  157 LTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSI------TQLVKSILKDP-VKPPS---TASSS  226 (808)
T ss_pred             eeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHH------HHHHHHHhcCC-CCCcc---cccHH
Confidence             223477889999999999999999999999999999999999985431      11222222221 11121   34456


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +..++.-.+.+||.+|-|-.+++.+
T Consensus       227 f~nfl~gLL~kdP~~RltW~~Ll~H  251 (808)
T KOG0597|consen  227 FVNFLQGLLIKDPAQRLTWTDLLGH  251 (808)
T ss_pred             HHHHHHHHhhcChhhcccHHHHhcC
Confidence            7788888899999999998887654

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-38  Score=332.95  Aligned_cols=244  Identities=17%  Similarity=0.227  Sum_probs=191.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchh----HHHHHHHHHHhhccCCCCceeEEEEEec----CCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR----IKIVSEFITRIGTVRHKNLIRLLGFCYN----RHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~----~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lv~e  683 (872)
                      ....+|+|++|.||+|.. +|+.||||.++.....    .+.+.+|+.+|++++|||||+++|++.+    ....++|||
T Consensus        24 ~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~E  102 (283)
T PHA02988         24 TSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILE  102 (283)
T ss_pred             CCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEE
Confidence            456799999999999998 7999999999754322    4667899999999999999999999976    347899999


Q ss_pred             ccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          684 YLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       684 y~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      |+++|+|.+++...  .++.....++.|++.|++|+|+..  +++||||||+||++++++.+||+|||+++........ 
T Consensus       103 y~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~-  179 (283)
T PHA02988        103 YCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYT--NKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFK-  179 (283)
T ss_pred             eCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcC--CCCCCcCChhhEEECCCCcEEEcccchHhhhcccccc-
Confidence            99999999999763  578888999999999999999732  7889999999999999999999999998754332221 


Q ss_pred             cccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc-ccCCCCchHHHHHH
Q 002875          762 PAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEIKL  838 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  838 (872)
                      ..+...|.+||+...  ..++.++|||||||++|||+||+.||.......      ....+.... ....+   ......
T Consensus       180 ~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~------~~~~i~~~~~~~~~~---~~~~~~  250 (283)
T PHA02988        180 NVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKE------IYDLIINKNNSLKLP---LDCPLE  250 (283)
T ss_pred             ccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhcCCCCCCC---CcCcHH
Confidence            223344677787754  578899999999999999999999987543111      001110000 01111   122346


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.||++||||+|+++.|+.++
T Consensus       251 l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        251 IKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             HHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            778999999999999999999999998764

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-38  Score=362.67  Aligned_cols=246  Identities=20%  Similarity=0.306  Sum_probs=196.2

Q ss_pred             hhhhccCCCCCceeeeecC--CC----cEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLP--TG----ITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~--~g----~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ....||+|+||+||+|+..  +|    ..||||.++..  ..+..+|.+|..+|++++|||||+++|+|.+....+|++|
T Consensus       696 l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~le  775 (1025)
T KOG1095|consen  696 LLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLE  775 (1025)
T ss_pred             eeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEeh
Confidence            5577999999999999853  23    35999999864  4467889999999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC---------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          684 YLPNGNLSEKIRTK---------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       684 y~~~g~L~~~l~~~---------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ||++|||..+|++.         +...+-+.++.|||+|+.||++.   ++|||||.++|+||+....+||+|||+|+..
T Consensus       776 yM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaDFGlArDi  852 (1025)
T KOG1095|consen  776 YMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIADFGLARDI  852 (1025)
T ss_pred             hcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcccchhHhh
Confidence            99999999999874         24566789999999999999999   9999999999999999999999999999843


Q ss_pred             cccCC-----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCC
Q 002875          755 QLADG-----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       755 ~~~~~-----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      ...+.     .....+.| +|||.+....++.|+|||||||++||++|.+.+++.+.+..+....     +......+.+
T Consensus       853 y~~~yyr~~~~a~lPvkW-m~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~-----~~~ggRL~~P  926 (1025)
T KOG1095|consen  853 YDKDYYRKHGEAMLPVKW-MPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLD-----VLEGGRLDPP  926 (1025)
T ss_pred             hhchheeccCccccceec-CCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHH-----HHhCCccCCC
Confidence            22211     11123454 5668777788999999999999999999988877766554432211     1111112223


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ..++   ..+.++|.+||+.+|++||++.++++.+..+.+
T Consensus       927 ~~CP---~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~  963 (1025)
T KOG1095|consen  927 SYCP---EKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISN  963 (1025)
T ss_pred             CCCC---hHHHHHHHHHccCChhhCccHHHHHhhhhhhhh
Confidence            3333   456799999999999999999999998876643

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-38  Score=340.28  Aligned_cols=244  Identities=21%  Similarity=0.286  Sum_probs=190.5

Q ss_pred             hhhccCCCCCceeeeecCC--C--cE-EEEEEeec----cchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          613 CEEAARPQSAAGCKAVLPT--G--IT-VSVKKIEW----GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~--g--~~-vavK~~~~----~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ...+|+|+||.||+|++..  +  .. ||||..+.    ...+..++.+|.++|+.++|||||+++|++......|+|||
T Consensus       162 ~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmE  241 (474)
T KOG0194|consen  162 GKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVME  241 (474)
T ss_pred             cceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEE
Confidence            4789999999999999643  2  23 89999874    23457789999999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--
Q 002875          684 YLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       684 y~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--  758 (872)
                      +|+||+|.++|++.   .+..++..++.++|+||+|||+.   +++||||-++|+|++.++.+||+|||+++......  
T Consensus       242 l~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~  318 (474)
T KOG0194|consen  242 LCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMK  318 (474)
T ss_pred             ecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeCccccccCCcceeec
Confidence            99999999999874   57899999999999999999999   99999999999999999999999999987543111  


Q ss_pred             C-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccc-ccccccCCCCchHHH
Q 002875          759 G-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEM-YNENEVGSSSSLQDE  835 (872)
Q Consensus       759 ~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  835 (872)
                      . .....+.|. +||......++.++|||||||++||+++ |..|+.+-...+      ....+ ......+.++.   .
T Consensus       319 ~~~~klPirWL-APEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~------v~~kI~~~~~r~~~~~~---~  388 (474)
T KOG0194|consen  319 KFLKKLPIRWL-APETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYE------VKAKIVKNGYRMPIPSK---T  388 (474)
T ss_pred             cccccCcceec-ChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHH------HHHHHHhcCccCCCCCC---C
Confidence            1 112245555 4677777789999999999999999999 556555332111      11111 11111111222   2


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ...+..++.+||..||++||||.++.+.++.+..
T Consensus       389 p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~  422 (474)
T KOG0194|consen  389 PKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEK  422 (474)
T ss_pred             HHHHHHHHHHhccCChhhccCHHHHHHHHHHHHh
Confidence            3345567779999999999999999999987643

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=5.4e-38  Score=342.47  Aligned_cols=247  Identities=20%  Similarity=0.245  Sum_probs=188.6

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecC-CeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR-HQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-~~~~lv  681 (872)
                      ..+.||+|+||.||+|..      .+++.||||+++...  ...+.+.+|+.+++++ +|||||+++|+|... +..++|
T Consensus        11 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (338)
T cd05102          11 LGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVI   90 (338)
T ss_pred             eeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEE
Confidence            778999999999999963      346789999997532  2345688899999999 899999999998764 468999


Q ss_pred             EcccCCCChHHHhhCC----------------------------------------------------------------
Q 002875          682 YDYLPNGNLSEKIRTK----------------------------------------------------------------  697 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~----------------------------------------------------------------  697 (872)
                      |||+++|+|.+++...                                                                
T Consensus        91 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T cd05102          91 VEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSP  170 (338)
T ss_pred             EecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCC
Confidence            9999999999998642                                                                


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC----CcccccccCchhh
Q 002875          698 RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS----FPAKIAWTESGEF  773 (872)
Q Consensus       698 ~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~  773 (872)
                      .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++........    ...+...|.+||.
T Consensus       171 l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~  247 (338)
T cd05102         171 LTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPES  247 (338)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHH
Confidence            34566778999999999999998   9999999999999999999999999998754221111    1112234667788


Q ss_pred             hcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCC
Q 002875          774 YNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPS  852 (872)
Q Consensus       774 ~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~  852 (872)
                      .....++.++|||||||++|||+| |..||........  .   .....+......+   ......+.+++.+||+.||+
T Consensus       248 ~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~--~---~~~~~~~~~~~~~---~~~~~~l~~li~~cl~~dp~  319 (338)
T cd05102         248 IFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEE--F---CQRLKDGTRMRAP---ENATPEIYRIMLACWQGDPK  319 (338)
T ss_pred             hhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHH--H---HHHHhcCCCCCCC---CCCCHHHHHHHHHHccCChh
Confidence            777778999999999999999997 7777764322110  0   0011111101111   12234678999999999999


Q ss_pred             CCCCHHHHHHHHcccCC
Q 002875          853 DRPSMEEALKLLSGLKP  869 (872)
Q Consensus       853 ~Rpt~~~v~~~L~~~~~  869 (872)
                      +|||+.|+++.|+.+..
T Consensus       320 ~RPs~~el~~~l~~~~~  336 (338)
T cd05102         320 ERPTFSALVEILGDLLQ  336 (338)
T ss_pred             hCcCHHHHHHHHHHHHh
Confidence            99999999999987754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=3.2e-37  Score=309.68  Aligned_cols=252  Identities=21%  Similarity=0.250  Sum_probs=195.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCC-ceeEEEEEecCC------eeEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKN-LIRLLGFCYNRH------QAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~n-iv~l~~~~~~~~------~~~l  680 (872)
                      ..+++|+|+||+||||+. .+|+.||+|++.....   -.....+|+.++++++|+| ||++++++.+.+      ..++
T Consensus        15 ~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~l   94 (323)
T KOG0594|consen   15 KVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYL   94 (323)
T ss_pred             HHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEE
Confidence            788999999999999984 6899999999986544   2445678999999999999 999999999876      7899


Q ss_pred             EEcccCCCChHHHhhCC------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          681 LYDYLPNGNLSEKIRTK------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      |+||++. +|.+++...      .+-...+.++.|+++|++|||++   +|+||||||+|||++++|.+||+|||+|+..
T Consensus        95 vfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~  170 (323)
T KOG0594|consen   95 VFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFGLARAF  170 (323)
T ss_pred             EEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccchHHHh
Confidence            9999986 999998652      34456789999999999999999   9999999999999999999999999999876


Q ss_pred             cccCCCC--cccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCC---------------CCcccccc
Q 002875          755 QLADGSF--PAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSL---------------QNKPIDGL  816 (872)
Q Consensus       755 ~~~~~~~--~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~---------------~~~~~~~~  816 (872)
                      .......  ...+-||.+||+.-+. .|+..+||||+|||++||++++..|.+..+.               ..|+....
T Consensus       171 ~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~  250 (323)
T KOG0594|consen  171 SIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSS  250 (323)
T ss_pred             cCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccc
Confidence            5443322  2367789999987654 7899999999999999999988888754321               12222211


Q ss_pred             ccccccccccCC-CCc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH--Hccc
Q 002875          817 LGEMYNENEVGS-SSS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGL  867 (872)
Q Consensus       817 ~~~~~~~~~~~~-~~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~  867 (872)
                      ..+...+.+... ...    .+....+..+++.+|++.+|++|.|++.++.+  +..+
T Consensus       251 ~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~  308 (323)
T KOG0594|consen  251 LPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSEL  308 (323)
T ss_pred             cccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccc
Confidence            111110000000 111    11222468899999999999999999999987  5544

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=9.5e-38  Score=305.72  Aligned_cols=252  Identities=19%  Similarity=0.219  Sum_probs=190.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh---HHHHHHHHHHhhccCCCCceeEEEEEec--CCeeE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAY  679 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~  679 (872)
                      +.|.  ..+.|++|+||.||+|+. .+++.||.|+++.....   .-...+||.++.+.+|||||.+.++...  -+.+|
T Consensus        76 ~efe--~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy  153 (419)
T KOG0663|consen   76 EEFE--KLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIY  153 (419)
T ss_pred             HHHH--HHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceee
Confidence            4455  889999999999999996 57889999999875432   1234688999999999999999998764  35799


Q ss_pred             EEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      ||||||+. ||...+..   .....+.+.++.|+++|++|||..   .|+|||+|++|+|+.+.|.+||+|||+|+.+..
T Consensus       154 ~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygs  229 (419)
T KOG0663|consen  154 IVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLAREYGS  229 (419)
T ss_pred             eeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchhhhhcC
Confidence            99999987 88888865   345677888999999999999999   999999999999999999999999999998766


Q ss_pred             cCCCCc--ccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccccccc
Q 002875          757 ADGSFP--AKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGLLG  818 (872)
Q Consensus       757 ~~~~~~--~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~~~  818 (872)
                      ......  .-+-||.+||..-+ ..|+..+|+||+|||+.||+++++.|.+......               |+-.....
T Consensus       230 p~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp  309 (419)
T KOG0663|consen  230 PLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELP  309 (419)
T ss_pred             CcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccc
Confidence            533322  25678999987654 5689999999999999999999888875433211               11000000


Q ss_pred             cc--ccccccCCC---CchHH--HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 EM--YNENEVGSS---SSLQD--EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ~~--~~~~~~~~~---~~~~~--~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..  +.-...+..   .....  ......+++...+..||++|.|++|.+++
T Consensus       310 ~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  310 AVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             hhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence            00  000000000   00011  23566788888999999999999999864

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=334.84  Aligned_cols=241  Identities=20%  Similarity=0.196  Sum_probs=192.9

Q ss_pred             cchhhhccCCCCCceeeee-cCCCcEEEEEEeecc-----c-hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEE
Q 002875          610 STECEEAARPQSAAGCKAV-LPTGITVSVKKIEWG-----A-TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~-----~-~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv  681 (872)
                      |.....+|+|.||+||.|. ..+|..||||.+...     . ...+.+.+|+.++++++ ||||+++++++......|+|
T Consensus        19 y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~iv   98 (370)
T KOG0583|consen   19 YELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTKIYIV   98 (370)
T ss_pred             eeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEEE
Confidence            3378899999999999997 468899999977653     1 12445668999999999 99999999999999999999


Q ss_pred             EcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEcccccccccc-c-
Q 002875          682 YDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQ-L-  756 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~~-~-  756 (872)
                      ||||.+|+|.+++.+.  ....+...++.|++.|++|+|+.   +|+||||||+|||+|.+ +.+||+|||++.... . 
T Consensus        99 mEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~  175 (370)
T KOG0583|consen   99 MEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDFGLSAISPGED  175 (370)
T ss_pred             EEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEeccccccccCCCC
Confidence            9999999999999873  45667788999999999999999   99999999999999999 999999999998763 2 


Q ss_pred             cCCCCcccccccCchhhhcccC-C-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          757 ADGSFPAKIAWTESGEFYNAMK-E-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       757 ~~~~~~~~~~~~~~~e~~~~~~-~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      ......+|.+.|++||++.+.. | +.++||||+||++|.|++|..||.+.....      ....+.... ...+.... 
T Consensus       176 ~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~------l~~ki~~~~-~~~p~~~~-  247 (370)
T KOG0583|consen  176 GLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPN------LYRKIRKGE-FKIPSYLL-  247 (370)
T ss_pred             CcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHH------HHHHHhcCC-ccCCCCcC-
Confidence            2223445677789999988755 5 477999999999999999999998633211      111111111 11111111 


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                       ..++.+++.+|+..||.+|+|+.|+++
T Consensus       248 -S~~~~~Li~~mL~~~P~~R~t~~~i~~  274 (370)
T KOG0583|consen  248 -SPEARSLIEKMLVPDPSTRITLLEILE  274 (370)
T ss_pred             -CHHHHHHHHHHcCCCcccCCCHHHHhh
Confidence             567889999999999999999999984

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-38  Score=329.22  Aligned_cols=247  Identities=20%  Similarity=0.245  Sum_probs=192.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||.|.||+||+|...  ..||||.++..   ..+.+.|+.|+..+++-+|.||+=+.|||..++. .||+.+|+|-
T Consensus       396 l~~rIGsGsFGtV~Rg~wh--GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGs  472 (678)
T KOG0193|consen  396 LGERIGSGSFGTVYRGRWH--GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQWCEGS  472 (678)
T ss_pred             ccceeccccccceeecccc--cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehhccCc
Confidence            6678999999999999874  36999999763   3457889999999999999999999999998887 9999999999


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC----CCC
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD----GSF  761 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~----~~~  761 (872)
                      +|..+++.   +.+..+.+.|+.|||+||.|||.+   +|||||+|+.||++.+++.+||+|||++.......    ...
T Consensus       473 SLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~q  549 (678)
T KOG0193|consen  473 SLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQ  549 (678)
T ss_pred             hhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCC
Confidence            99999986   346677889999999999999999   99999999999999999999999999985432211    112


Q ss_pred             cccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          762 PAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       762 ~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      +.+..-|++||++.   ..+++.++||||||||+|||+||.-|+......+...+.+  +....+.   ......++.++
T Consensus       550 p~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVG--rG~l~pd---~s~~~s~~pk~  624 (678)
T KOG0193|consen  550 PHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVG--RGYLMPD---LSKIRSNCPKA  624 (678)
T ss_pred             CccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEec--ccccCcc---chhhhccCHHH
Confidence            22333355666654   3478999999999999999999999987222111111111  1111111   11122344567


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      |.+++..||..++++||.+.+++..|+.+.+
T Consensus       625 mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  625 MKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             HHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence            8888999999999999999999998877654

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-38  Score=300.68  Aligned_cols=252  Identities=21%  Similarity=0.238  Sum_probs=202.4

Q ss_pred             hhhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh---------HHHHHHHHHHhhcc-CCCCceeEE
Q 002875          601 ANDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR---------IKIVSEFITRIGTV-RHKNLIRLL  669 (872)
Q Consensus       601 ~~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~---------~~~~~~e~~~l~~l-~H~niv~l~  669 (872)
                      .++.+.+|.  ..+.+|+|..+.|.++.. ++|+++|+|++......         .+.-.+|+.+++++ -||+|+++.
T Consensus        12 a~~fy~~y~--pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~   89 (411)
T KOG0599|consen   12 AKGFYAKYE--PKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQ   89 (411)
T ss_pred             HhhHHhhcC--hHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEee
Confidence            345556665  889999999999988874 68899999999753221         33446789999987 499999999


Q ss_pred             EEEecCCeeEEEEcccCCCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          670 GFCYNRHQAYLLYDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       670 ~~~~~~~~~~lv~ey~~~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      ++|+++..+++|+|.|+.|.|+|++....  +..+..+|++|+.+|++|||..   .|||||+||+|||+|++..+||+|
T Consensus        90 D~yes~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~isD  166 (411)
T KOG0599|consen   90 DVYESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKISD  166 (411)
T ss_pred             eeccCcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEEec
Confidence            99999999999999999999999998854  5566689999999999999999   999999999999999999999999


Q ss_pred             ccccccccccCCC-CcccccccCchhhhc------ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccc
Q 002875          748 FGFKYLTQLADGS-FPAKIAWTESGEFYN------AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       748 fg~~~~~~~~~~~-~~~~~~~~~~~e~~~------~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      ||++........- ..++++.|.+||.+.      ...|+..+|+||.|||||.++.|.+||+....     + -+++-+
T Consensus       167 FGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQ-----m-lMLR~I  240 (411)
T KOG0599|consen  167 FGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQ-----M-LMLRMI  240 (411)
T ss_pred             cceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHH-----H-HHHHHH
Confidence            9999766544322 234677788887653      34678889999999999999999999984321     1 111222


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........++.+.+...+..+++.+|++.||.+|.|++|++++
T Consensus       241 meGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  241 MEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             HhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence            2222233466777888889999999999999999999999865

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-38  Score=317.03  Aligned_cols=247  Identities=21%  Similarity=0.227  Sum_probs=184.4

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecC---C--eeEEEEc
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR---H--QAYLLYD  683 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~---~--~~~lv~e  683 (872)
                      +...+++|+|+||.||+|++ .+++.||||++-.+.   +.-.+|+++|++++|||||++.-+|...   +  +..+|||
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~---r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVle  102 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDK---RYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLE  102 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCC---CcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHH
Confidence            34789999999999999996 568999999986443   2345689999999999999999888642   2  3468999


Q ss_pred             ccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEccccccccccc
Q 002875          684 YLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQL  756 (872)
Q Consensus       684 y~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~~~  756 (872)
                      |||. +|.++++.      +.+.-..+-+..|+.+|++|||+.   +|+||||||+|+|+|.+ |.+||||||-|+....
T Consensus       103 ymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~  178 (364)
T KOG0658|consen  103 YMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVK  178 (364)
T ss_pred             hchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcceeecc
Confidence            9997 99999883      345556678999999999999998   99999999999999965 8999999999987654


Q ss_pred             cCCCCcc-cccccCchhhh-cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-cc--------cccccc-----
Q 002875          757 ADGSFPA-KIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-ID--------GLLGEM-----  820 (872)
Q Consensus       757 ~~~~~~~-~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-~~--------~~~~~~-----  820 (872)
                      .+....- ...||.|||.+ .+..|+.+.||||.|||+.||+-|++.|.+.+...... +.        +.+..+     
T Consensus       179 ~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~  258 (364)
T KOG0658|consen  179 GEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYT  258 (364)
T ss_pred             CCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccc
Confidence            4433221 44567888765 56689999999999999999999999888654321100 00        000000     


Q ss_pred             --ccccccCCC--C-chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 --YNENEVGSS--S-SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 --~~~~~~~~~--~-~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                        ..+...+.+  . .......+.++++.++++.+|.+|.++.|++.+
T Consensus       259 ~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h  306 (364)
T KOG0658|consen  259 EFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAH  306 (364)
T ss_pred             cccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcc
Confidence              000000000  0 112334578899999999999999999998854

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-39  Score=335.39  Aligned_cols=409  Identities=21%  Similarity=0.204  Sum_probs=283.2

Q ss_pred             CCcEEECCCCCCcccCCccccCC--CCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNL--TSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      .-+.||.+.+.+..+.-..+.++  +.-++||+++|++..+.+..|.++++|+.+++.+|.++ .+|.......+|+.|+
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD  131 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence            34566777777655433333222  23445888888887777777788888888888887776 5666555566688888


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      |.+|.|+.+-.+++.-++.||.|||+.|.|+.+....|..                        -.++++|+|++|.|+.
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~------------------------~~ni~~L~La~N~It~  187 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPA------------------------KVNIKKLNLASNRITT  187 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCC------------------------CCCceEEeeccccccc
Confidence            8888777777777777778888888887776543333333                        3456666666666665


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      .--..|.++.+|.+|.|++|.++...+..|.++++|+.|+|..|+|....--.|.++++|+.|.+..|.+...-...|..
T Consensus       188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~  267 (873)
T KOG4194|consen  188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG  267 (873)
T ss_pred             cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence            55566666666777777777777666666766777777777777765433445667777777777777776655566667


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEE
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR  336 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~  336 (872)
                      +.++++|+|..|+++..-..++.+++.|+.|++|.|.+...-+                        .++.-+++|++|+
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~------------------------d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI------------------------DSWSFTQKLKELD  323 (873)
T ss_pred             ecccceeecccchhhhhhcccccccchhhhhccchhhhheeec------------------------chhhhcccceeEe
Confidence            7777777777777776666667777777777777776653222                        2344567788888


Q ss_pred             cCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccC
Q 002875          337 LEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT  416 (872)
Q Consensus       337 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~  416 (872)
                      |++|+|+...+..|..|..|+.|+|++|.+...-...|..+++|+.||+++|.. .                   .|-- 
T Consensus       324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l-s-------------------~~IE-  382 (873)
T KOG4194|consen  324 LSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL-S-------------------WCIE-  382 (873)
T ss_pred             ccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE-E-------------------EEEe-
Confidence            888888877777888888888888888888766667777788888888877732 1                   1100 


Q ss_pred             CCCCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccC
Q 002875          417 GNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGS  496 (872)
Q Consensus       417 ~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  496 (872)
                                              .-...|.++++|+.|+|.+|++..+...+|.+++.|+.|||.+|.|..+-|++|..
T Consensus       383 ------------------------Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  383 ------------------------DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             ------------------------cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence                                    01224667888888888888888777788888888888899888888888888888


Q ss_pred             CCCCcEEECcCCeeeecCCCCccccc
Q 002875          497 CSSLTVLNVSFNDISGSIPSGKVLRL  522 (872)
Q Consensus       497 l~~L~~L~ls~N~l~~~~p~~~~~~~  522 (872)
                      + .|++|-+..-.+.+.+.-.++..|
T Consensus       439 m-~Lk~Lv~nSssflCDCql~Wl~qW  463 (873)
T KOG4194|consen  439 M-ELKELVMNSSSFLCDCQLKWLAQW  463 (873)
T ss_pred             c-hhhhhhhcccceEEeccHHHHHHH
Confidence            8 888888877777665554444433

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.9e-38  Score=295.13  Aligned_cols=244  Identities=16%  Similarity=0.209  Sum_probs=198.2

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|+  ....+|+|.||.||.|.- .++-.||+|++.+.+-    -.+++++|+++-+.++||||.+++|++.+....||
T Consensus        22 ~dfe--igr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   22 DDFE--IGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             hhcc--ccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            3466  889999999999999985 5677899999975432    25678999999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          681 LYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      ++||+++|++...|+.    +.+......++.|+|.|+.|+|..   +|+||||||+|+|++..+..|++|||.+.....
T Consensus       100 ilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~  176 (281)
T KOG0580|consen  100 ILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  176 (281)
T ss_pred             EEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCceeecCC
Confidence            9999999999999984    235556678999999999999998   999999999999999999999999999866543


Q ss_pred             cCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          757 ADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       757 ~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      ....+.+++.-|.+||..++...+.++|+|++||++||++.|.+||.....  ...    ..++..-. ...+   ....
T Consensus       177 ~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~--~et----YkrI~k~~-~~~p---~~is  246 (281)
T KOG0580|consen  177 NKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSH--SET----YKRIRKVD-LKFP---STIS  246 (281)
T ss_pred             CCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhh--HHH----HHHHHHcc-ccCC---cccC
Confidence            334444566668899999999999999999999999999999999975431  111    11111111 1111   1233


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ..+.+++.+|+..+|.+|.+..|++++=
T Consensus       247 ~~a~dlI~~ll~~~p~~r~~l~~v~~hp  274 (281)
T KOG0580|consen  247 GGAADLISRLLVKNPIERLALTEVMDHP  274 (281)
T ss_pred             hhHHHHHHHHhccCccccccHHHHhhhH
Confidence            4677899999999999999999998763

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.5e-37  Score=310.23  Aligned_cols=240  Identities=16%  Similarity=0.204  Sum_probs=192.6

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      +..+.+|+|+||+|-+|.. ..|+.||||.+++.+.    ..-.+++||++|..++||||+.++++|+..+...|||||.
T Consensus        56 E~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYa  135 (668)
T KOG0611|consen   56 EITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYA  135 (668)
T ss_pred             HHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEec
Confidence            3889999999999999985 7899999999976432    2335689999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCc
Q 002875          686 PNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFP  762 (872)
Q Consensus       686 ~~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~  762 (872)
                      .+|+|.||+.++.  +..+...+++||..|+.|+|.+   +++|||+|-+|||+|.++.+||+|||++..+....- .+.
T Consensus       136 S~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTF  212 (668)
T KOG0611|consen  136 SGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTF  212 (668)
T ss_pred             CCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhhccccHHHHh
Confidence            9999999998754  5666788999999999999999   999999999999999999999999999876654321 122


Q ss_pred             ccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ++.+.|+.||+.++.+| ++.+|.||+||++|.++.|..||++.+...  ...+.-...|.+.+.  +       .+..-
T Consensus       213 CGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~--lvrQIs~GaYrEP~~--P-------SdA~g  281 (668)
T KOG0611|consen  213 CGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKR--LVRQISRGAYREPET--P-------SDASG  281 (668)
T ss_pred             cCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHH--HHHHhhcccccCCCC--C-------chHHH
Confidence            35566889999887654 578999999999999999999998654321  111111222222211  1       13445


Q ss_pred             HHHHcccCCCCCCCCHHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ++.+++..+|++|.|+++|..+-
T Consensus       282 LIRwmLmVNP~RRATieDiAsHW  304 (668)
T KOG0611|consen  282 LIRWMLMVNPERRATIEDIASHW  304 (668)
T ss_pred             HHHHHHhcCcccchhHHHHhhhh
Confidence            66677788999999999998764

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-38  Score=319.33  Aligned_cols=240  Identities=19%  Similarity=0.214  Sum_probs=196.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|.||.||||.. .+++.||+|++....  ...+..++|+.++..++|+||.++||.|..+...+++||||.||
T Consensus        17 ~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gG   96 (467)
T KOG0201|consen   17 KLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGG   96 (467)
T ss_pred             cchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCc
Confidence            668999999999999985 789999999997643  35678899999999999999999999999999999999999999


Q ss_pred             ChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccc
Q 002875          689 NLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAK  764 (872)
Q Consensus       689 ~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~  764 (872)
                      ++.+.++...  +.....-|++++..|+.|+|.+   +.+|||||+.||++..+|.+|++|||++........  ....+
T Consensus        97 sv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvG  173 (467)
T KOG0201|consen   97 SVLDLLKSGNILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVG  173 (467)
T ss_pred             chhhhhccCCCCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeechhhccccccc
Confidence            9999998654  3444566889999999999999   999999999999999999999999999865443222  22347


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ++++++||++....|+.|+||||+|++.+||++|.+|+..-..+.      .+--+.... ++.-  .....+.+.+++.
T Consensus       174 TPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmr------vlflIpk~~-PP~L--~~~~S~~~kEFV~  244 (467)
T KOG0201|consen  174 TPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMR------VLFLIPKSA-PPRL--DGDFSPPFKEFVE  244 (467)
T ss_pred             cccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcce------EEEeccCCC-CCcc--ccccCHHHHHHHH
Confidence            888999999998899999999999999999999998886543311      111111111 1111  1244566889999


Q ss_pred             HcccCCCCCCCCHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .|++.||+.||++.+++++
T Consensus       245 ~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  245 ACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             HHhhcCcccCcCHHHHhhh
Confidence            9999999999999999865

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-38  Score=312.08  Aligned_cols=248  Identities=21%  Similarity=0.274  Sum_probs=190.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeec---cchhHHHHHHHHHHhhccCCCCceeEEEEEec-----CCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEW---GATRIKIVSEFITRIGTVRHKNLIRLLGFCYN-----RHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~---~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-----~~~~~lv~  682 (872)
                      ..+.+|+|+||.|++|+. .+|+.||||++..   .....+...+|+.+++.++|+|||.+.+.+..     -+.+|+|+
T Consensus        26 ~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~  105 (359)
T KOG0660|consen   26 LIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVF  105 (359)
T ss_pred             ccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEeh
Confidence            468899999999999985 6899999999973   23346677889999999999999999998865     35789999


Q ss_pred             cccCCCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc---
Q 002875          683 DYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA---  757 (872)
Q Consensus       683 ey~~~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~---  757 (872)
                      |+|+. ||...++...  .......+++|+++||.|+|+.   +|+|||+||+|++++.+-..||+|||+|+.....   
T Consensus       106 elMet-DL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~  181 (359)
T KOG0660|consen  106 ELMET-DLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFED  181 (359)
T ss_pred             hHHhh-HHHHHHHcCccccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccceeeccccCcc
Confidence            99954 9999998754  4555677889999999999999   9999999999999999999999999999876432   


Q ss_pred             -CCCCcccccccCchhhh-cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-c----------------cccc
Q 002875          758 -DGSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-D----------------GLLG  818 (872)
Q Consensus       758 -~~~~~~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~----------------~~~~  818 (872)
                       .-+.-..+.||.+||+. ....|+..+||||.|||+.||++|++.|.+.+....... .                ..+.
T Consensus       182 ~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar  261 (359)
T KOG0660|consen  182 GFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKAR  261 (359)
T ss_pred             cchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHH
Confidence             11122357899999876 456899999999999999999999998886553221100 0                0011


Q ss_pred             cccc----ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 EMYN----ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ~~~~----~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+.    ....+.....+.....+++++.++|..||.+|+|++|++++
T Consensus       262 ~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  262 PYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            1111    00000011112334578899999999999999999999865

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-37  Score=328.86  Aligned_cols=240  Identities=19%  Similarity=0.205  Sum_probs=192.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      -.+.+|.|+-|.|-.|+. .+|+.+|||.+.+..    .....+.+||.+|+-+.||||+++++++++..++|+|.||++
T Consensus        16 LgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~   95 (786)
T KOG0588|consen   16 LGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVP   95 (786)
T ss_pred             ccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecC
Confidence            456789999999999985 799999999997542    234567899999999999999999999999999999999999


Q ss_pred             CCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-CCCcc
Q 002875          687 NGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-GSFPA  763 (872)
Q Consensus       687 ~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-~~~~~  763 (872)
                      +|.|++++..++  ...+..+++.||+.|+.|+|+.   +|+|||+||+|+|||.+..+||+|||+|....... -.+.+
T Consensus        96 gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeTSC  172 (786)
T KOG0588|consen   96 GGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLETSC  172 (786)
T ss_pred             CchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceeecccCCccccccC
Confidence            999999997654  5566688999999999999999   99999999999999999999999999997543221 12334


Q ss_pred             cccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      |.+-|++||+..+.+| +.++||||.|||+|.|+||+-||+++...  ......-...+        +.......++.++
T Consensus       173 GSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir--~LLlKV~~G~f--------~MPs~Is~eaQdL  242 (786)
T KOG0588|consen  173 GSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIR--VLLLKVQRGVF--------EMPSNISSEAQDL  242 (786)
T ss_pred             CCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHH--HHHHHHHcCcc--------cCCCcCCHHHHHH
Confidence            5566899999987654 68899999999999999999999854311  11111111111        1112334567788


Q ss_pred             HHHcccCCCCCCCCHHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      +.+|+..||++|.|++||.+|-
T Consensus       243 Lr~ml~VDp~~RiT~~eI~kHP  264 (786)
T KOG0588|consen  243 LRRMLDVDPSTRITTEEILKHP  264 (786)
T ss_pred             HHHHhccCccccccHHHHhhCc
Confidence            8889999999999999999874

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-37  Score=316.23  Aligned_cols=250  Identities=17%  Similarity=0.151  Sum_probs=190.8

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---------------hHHHHHHHHHHhhccCCCCceeE
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---------------RIKIVSEFITRIGTVRHKNLIRL  668 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---------------~~~~~~~e~~~l~~l~H~niv~l  668 (872)
                      ...|.  ....||+|+||+|-+|.. .+|+.||||++.+...               ..+..++||.+|++++|||||+|
T Consensus        96 lNqy~--l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   96 LNQYE--LIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             hhhee--hhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            34465  889999999999999985 6799999999964211               13578899999999999999999


Q ss_pred             EEEEecC--CeeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCee
Q 002875          669 LGFCYNR--HQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH  744 (872)
Q Consensus       669 ~~~~~~~--~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~k  744 (872)
                      +++..++  +.+|||+|||..|.+...=...  ....+.++|+.++..||+|||.+   +||||||||+|+||+++|++|
T Consensus       174 iEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl~~~g~VK  250 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLLSSDGTVK  250 (576)
T ss_pred             EEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEEcCCCcEE
Confidence            9999865  5799999999999986543222  46778899999999999999999   999999999999999999999


Q ss_pred             EccccccccccccC-------CCCcccccccCchhhhcc----cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc
Q 002875          745 LAEFGFKYLTQLAD-------GSFPAKIAWTESGEFYNA----MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI  813 (872)
Q Consensus       745 i~dfg~~~~~~~~~-------~~~~~~~~~~~~~e~~~~----~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~  813 (872)
                      |+|||.+.......       -....+++.+.+||....    ...+.+.||||+||++|.|+.|+.||.+....     
T Consensus       251 IsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~-----  325 (576)
T KOG0585|consen  251 ISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFEL-----  325 (576)
T ss_pred             eeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHH-----
Confidence            99999986541110       011234444555665433    23466789999999999999999999865422     


Q ss_pred             cccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          814 DGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                       .....+......  .+..++......+++.++|.+||++|.+..+|..+...-
T Consensus       326 -~l~~KIvn~pL~--fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt  376 (576)
T KOG0585|consen  326 -ELFDKIVNDPLE--FPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVT  376 (576)
T ss_pred             -HHHHHHhcCccc--CCCcccccHHHHHHHHHHhhcChhheeehhhheecceec
Confidence             122223222211  233345556788999999999999999999998776533

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=7.8e-37  Score=328.15  Aligned_cols=248  Identities=19%  Similarity=0.208  Sum_probs=185.1

Q ss_pred             hhhhccCCCCCceeeeecC-----------------CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLP-----------------TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFC  672 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-----------------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~  672 (872)
                      ..+.+|+|+||.||+|...                 ++..||||.+....  .....+.+|++++++++|||||++++++
T Consensus         9 ~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~   88 (304)
T cd05096           9 FKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVC   88 (304)
T ss_pred             eeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEE
Confidence            6788999999999999742                 34479999987532  2356788999999999999999999999


Q ss_pred             ecCCeeEEEEcccCCCChHHHhhCC---------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCC
Q 002875          673 YNRHQAYLLYDYLPNGNLSEKIRTK---------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLK  731 (872)
Q Consensus       673 ~~~~~~~lv~ey~~~g~L~~~l~~~---------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk  731 (872)
                      .+.+..++||||+++|+|.+++...                     .+|.+...++.|++.||+|||+.   +|+|||||
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~ivH~dlk  165 (304)
T cd05096          89 VDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---NFVHRDLA  165 (304)
T ss_pred             ecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---CccccCcc
Confidence            9999999999999999999988542                     35677889999999999999998   99999999


Q ss_pred             CCCeeeCCCCCeeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCC--CCCCCC
Q 002875          732 ASNIVFDENMEPHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG--RLTNAG  805 (872)
Q Consensus       732 ~~Nill~~~~~~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~--~p~~~~  805 (872)
                      |+||++++++.+||+|||+++........    .......|.+||+.....++.++|||||||++|||+++.  .|+...
T Consensus       166 p~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~  245 (304)
T cd05096         166 TRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGEL  245 (304)
T ss_pred             hhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcC
Confidence            99999999999999999998754322111    111223367788877777899999999999999999753  455432


Q ss_pred             CCCCCcccc-ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          806 SSLQNKPID-GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       806 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ......... ..............++   .....+.+++.+||+.||++||||+|+.+.|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         246 TDEQVIENAGEFFRDQGRQVYLFRPP---PCPQGLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             CHHHHHHHHHHHhhhccccccccCCC---CCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence            211100000 0000000000000011   12346788999999999999999999999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=1.7e-36  Score=333.95  Aligned_cols=245  Identities=19%  Similarity=0.228  Sum_probs=187.9

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|+.      .++..||||+++...  ...+.+.+|+.+++.+ +|||||+++|+|.+.+..++||
T Consensus        39 ~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~  118 (375)
T cd05104          39 FGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVIT  118 (375)
T ss_pred             hhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeee
Confidence            889999999999999862      456789999997532  2345678899999999 8999999999999999999999


Q ss_pred             cccCCCChHHHhhCC-----------------------------------------------------------------
Q 002875          683 DYLPNGNLSEKIRTK-----------------------------------------------------------------  697 (872)
Q Consensus       683 ey~~~g~L~~~l~~~-----------------------------------------------------------------  697 (872)
                      |||++|+|.++++..                                                                 
T Consensus       119 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (375)
T cd05104         119 EYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQD  198 (375)
T ss_pred             hhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccc
Confidence            999999999998531                                                                 


Q ss_pred             ------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC----
Q 002875          698 ------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF----  761 (872)
Q Consensus       698 ------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~----  761 (872)
                                  .++.....++.|+++||+|||+.   +|+||||||+||++++++.+||+|||+++.........    
T Consensus       199 ~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~  275 (375)
T cd05104         199 VTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGN  275 (375)
T ss_pred             cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCC
Confidence                        35667788999999999999998   99999999999999999999999999987543221111    


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ......|++||......++.++|||||||++|||+| |..||........  ............   .+.   ....++.
T Consensus       276 ~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~--~~~~~~~~~~~~---~~~---~~~~~l~  347 (375)
T cd05104         276 ARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSK--FYKMIKEGYRML---SPE---CAPSEMY  347 (375)
T ss_pred             CCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHH--HHHHHHhCccCC---CCC---CCCHHHH
Confidence            111223667888877788999999999999999998 6666643221110  000111111000   011   1124678


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +++.+||+.||++||||+|++++|+..
T Consensus       348 ~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         348 DIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             HHHHHHccCChhHCcCHHHHHHHHHhh
Confidence            999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-37  Score=325.79  Aligned_cols=247  Identities=23%  Similarity=0.332  Sum_probs=197.4

Q ss_pred             hhhhccCCCCCceeeeecCC-CcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLPT-GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      -..++|-|+||.||.|+.+. .-+||||.++.+.+..++|.+|..+|+.++|||+|+++|+|..+..+|||+|||..|+|
T Consensus       271 MkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNL  350 (1157)
T KOG4278|consen  271 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNL  350 (1157)
T ss_pred             eeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccH
Confidence            45679999999999999754 56899999999899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCC----CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc---
Q 002875          691 SEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA---  763 (872)
Q Consensus       691 ~~~l~~~~----~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~---  763 (872)
                      .+||++..    +---.+.++.||+.||+||...   .+||||+.++|+|+.++..+||+|||+++++.........   
T Consensus       351 LdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAK  427 (1157)
T KOG4278|consen  351 LDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAK  427 (1157)
T ss_pred             HHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCcc
Confidence            99998743    2222357889999999999999   9999999999999999999999999999987654332222   


Q ss_pred             -cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 -KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 -~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                       .+.|++| |-..+..++.|+|||+|||++||++|.+.-++.+.+..  ...+.+..-+..      +..+.+.+.+.++
T Consensus       428 FPIKWTAP-EsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlS--qVY~LLEkgyRM------~~PeGCPpkVYeL  498 (1157)
T KOG4278|consen  428 FPIKWTAP-ESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYGLLEKGYRM------DGPEGCPPKVYEL  498 (1157)
T ss_pred             CcccccCc-ccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHH--HHHHHHhccccc------cCCCCCCHHHHHH
Confidence             4556654 66667778999999999999999999765544443211  011122222211      1112344678899


Q ss_pred             HHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          843 ALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      |.+||+..|++||++.|+-+.++.|-.+
T Consensus       499 MraCW~WsPsDRPsFaeiHqafEtmf~~  526 (1157)
T KOG4278|consen  499 MRACWNWSPSDRPSFAEIHQAFETMFSS  526 (1157)
T ss_pred             HHHHhcCCcccCccHHHHHHHHHHHhcc
Confidence            9999999999999999999999877543

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=3e-36  Score=315.19  Aligned_cols=242  Identities=20%  Similarity=0.254  Sum_probs=191.5

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...++..+|+|.+.......+.+.+|+.++++++||||++++++|.+++..++||||+++|+|.
T Consensus         8 ~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~   87 (256)
T cd05114           8 FMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLL   87 (256)
T ss_pred             EeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHH
Confidence            67889999999999999888889999998765555677888999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---cccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAKI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~~  765 (872)
                      ++++.   ..++.....++.|++.|++|||+.   +|+||||||+||++++++.+|++|||.++.........   ....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~  164 (256)
T cd05114          88 NYLRQRQGKLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFP  164 (256)
T ss_pred             HHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCc
Confidence            99864   357888999999999999999998   99999999999999999999999999886532211111   1112


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||......++.++|||||||++|||+| |+.||........      ............+.   .....+.+++.
T Consensus       165 ~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~------~~~i~~~~~~~~~~---~~~~~~~~li~  235 (256)
T cd05114         165 VKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEV------VEMISRGFRLYRPK---LASMTVYEVMY  235 (256)
T ss_pred             hhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHH------HHHHHCCCCCCCCC---CCCHHHHHHHH
Confidence            24677888877778889999999999999999 7777653321110      00111111011111   11245789999


Q ss_pred             HcccCCCCCCCCHHHHHHHHc
Q 002875          845 LCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      +||+.||++||+++|+++.|.
T Consensus       236 ~c~~~~p~~Rps~~~l~~~l~  256 (256)
T cd05114         236 SCWHEKPEGRPTFAELLRAIT  256 (256)
T ss_pred             HHccCCcccCcCHHHHHHhhC
Confidence            999999999999999998873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1e-36  Score=323.73  Aligned_cols=243  Identities=14%  Similarity=0.119  Sum_probs=190.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||.+....    .....+.+|+.++++++|+||+++++++.+++..++|||||+
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~   83 (285)
T cd05631           4 HYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMN   83 (285)
T ss_pred             EEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecC
Confidence            678899999999999985 689999999987532    223456789999999999999999999999999999999999


Q ss_pred             CCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CC
Q 002875          687 NGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SF  761 (872)
Q Consensus       687 ~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~  761 (872)
                      +|+|.+++..    ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++........ ..
T Consensus        84 ~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  160 (285)
T cd05631          84 GGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRG  160 (285)
T ss_pred             CCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecC
Confidence            9999988753    357788899999999999999999   999999999999999999999999999875432211 12


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|++||+.....++.++||||+||++|||+||+.||.........   ............   ........++.+
T Consensus       161 ~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~---~~~~~~~~~~~~---~~~~~~s~~~~~  234 (285)
T cd05631         161 RVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKR---EEVDRRVKEDQE---EYSEKFSEDAKS  234 (285)
T ss_pred             CCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhH---HHHHHHhhcccc---cCCccCCHHHHH
Confidence            23455678889888888899999999999999999999998754321110   000000000001   111123346778


Q ss_pred             HHHHcccCCCCCCCC-----HHHHHHH
Q 002875          842 VALLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      ++.+||+.||++||+     ++|++++
T Consensus       235 li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         235 ICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             HHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence            999999999999997     8888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=2.1e-36  Score=332.67  Aligned_cols=245  Identities=17%  Similarity=0.218  Sum_probs=188.9

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.+|+|+||.||+|+.      .+++.||||+++...  ...+.+.+|+++++++ +|||||+++|+|.+.+..++||
T Consensus        42 ~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~  121 (374)
T cd05106          42 FGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVIT  121 (374)
T ss_pred             ehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeH
Confidence            889999999999999873      345689999997532  2345678899999999 8999999999999999999999


Q ss_pred             cccCCCChHHHhhCC-----------------------------------------------------------------
Q 002875          683 DYLPNGNLSEKIRTK-----------------------------------------------------------------  697 (872)
Q Consensus       683 ey~~~g~L~~~l~~~-----------------------------------------------------------------  697 (872)
                      |||++|+|.++++..                                                                 
T Consensus       122 ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (374)
T cd05106         122 EYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEE  201 (374)
T ss_pred             hhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchh
Confidence            999999999988531                                                                 


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC----ccccc
Q 002875          698 -------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF----PAKIA  766 (872)
Q Consensus       698 -------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~----~~~~~  766 (872)
                             .++.+..+++.|+++||+|||+.   +|+||||||+||++++++.+||+|||+++.........    ..+..
T Consensus       202 ~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~  278 (374)
T cd05106         202 DTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPV  278 (374)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCcc
Confidence                   35667789999999999999998   99999999999999999999999999986543221111    11122


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .|++||+.....++.++|||||||++|||+| |+.||........  ............   .+.   ....++.+++.+
T Consensus       279 ~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~--~~~~~~~~~~~~---~~~---~~~~~l~~li~~  350 (374)
T cd05106         279 KWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSK--FYKMVKRGYQMS---RPD---FAPPEIYSIMKM  350 (374)
T ss_pred             ceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHH--HHHHHHcccCcc---CCC---CCCHHHHHHHHH
Confidence            3677888777778999999999999999998 8888764322110  000011101110   011   113467789999


Q ss_pred             cccCCCCCCCCHHHHHHHHccc
Q 002875          846 CTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ||+.||++|||++|++++|+++
T Consensus       351 cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         351 CWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             HcCCChhhCcCHHHHHHHHHHH
Confidence            9999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.1e-36  Score=329.37  Aligned_cols=237  Identities=13%  Similarity=0.070  Sum_probs=188.0

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      +.||+|+||.||++.. .+|+.||||+++...    .....+.+|+.++++++||||+++++++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999985 578999999997532    23445678999999999999999999999999999999999999


Q ss_pred             ChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCccc
Q 002875          689 NLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPAK  764 (872)
Q Consensus       689 ~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~~  764 (872)
                      +|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....+
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~g  157 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCG  157 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceec
Confidence            999998653  47788889999999999999999   99999999999999999999999999986432111  112235


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||...+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+++.
T Consensus       158 t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~------~~~~~~~~~-~~~p~---~~~~~~~~li~  227 (323)
T cd05571         158 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK------LFELILMEE-IRFPR---TLSPEAKSLLA  227 (323)
T ss_pred             CccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHHHHHH
Confidence            566888898888888999999999999999999999987543211      001111111 11111   22345778899


Q ss_pred             HcccCCCCCCC-----CHHHHHHH
Q 002875          845 LCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +||+.||++||     +++|++++
T Consensus       228 ~~L~~dP~~R~~~~~~~~~~ll~h  251 (323)
T cd05571         228 GLLKKDPKQRLGGGPEDAKEIMEH  251 (323)
T ss_pred             HHccCCHHHcCCCCCCCHHHHHcC
Confidence            99999999999     79998764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-37  Score=319.73  Aligned_cols=249  Identities=21%  Similarity=0.272  Sum_probs=193.1

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      +.++||+|.||+|..+.+..+..||||.++.+..  ..+.|.+||++|.+++|||||+++|+|..++.+++|+|||++||
T Consensus       542 ~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGD  621 (807)
T KOG1094|consen  542 FKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGD  621 (807)
T ss_pred             hhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCc
Confidence            7789999999999999998899999999987543  46899999999999999999999999999999999999999999


Q ss_pred             hHHHhhCCC----CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-----CC
Q 002875          690 LSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-----GS  760 (872)
Q Consensus       690 L~~~l~~~~----~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-----~~  760 (872)
                      |.+++.+..    +-..-.+|+.|||.||+||.+.   .+||||+.++|+|+|.++++||+|||+++..-..+     +.
T Consensus       622 LnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr  698 (807)
T KOG1094|consen  622 LNQFLSAHELPTAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGR  698 (807)
T ss_pred             HHHHHHhccCcccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccCCceeeecc
Confidence            999998752    2234468999999999999998   99999999999999999999999999997432221     12


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcC--CCCCCCCCCCCCccccccccccccccccC-CCCchHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN--GRLTNAGSSLQNKPIDGLLGEMYNENEVG-SSSSLQDEIK  837 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  837 (872)
                      ....+.|++. |.+--.+++.++|||+|||++||+++-  .+|+....+.   ...+...++.+..... .......+..
T Consensus       699 ~vlpiRwmaw-EsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e---~vven~~~~~~~~~~~~~l~~P~~cp~  774 (807)
T KOG1094|consen  699 AVLPIRWMAW-ESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDE---QVVENAGEFFRDQGRQVVLSRPPACPQ  774 (807)
T ss_pred             eeeeeeehhH-HHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHH---HHHHhhhhhcCCCCcceeccCCCcCcH
Confidence            2224565544 555556889999999999999999774  4565532211   1112222222221111 0111122334


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+.+++..||..|-++||+++++...|+..
T Consensus       775 ~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  775 GLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             HHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence            677999999999999999999999998754

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-36  Score=326.11  Aligned_cols=235  Identities=15%  Similarity=0.100  Sum_probs=185.4

Q ss_pred             ccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          616 AARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       616 ~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ||+|+||.||+|.. .+|+.||||.++..    ......+.+|+.++++++|||||+++++|.+++..|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            69999999999986 46889999999753    22345677899999999999999999999999999999999999999


Q ss_pred             HHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCccccc
Q 002875          691 SEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPAKIA  766 (872)
Q Consensus       691 ~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~~~~  766 (872)
                      .+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....++.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~  157 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTP  157 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCc
Confidence            999865  357788889999999999999998   99999999999999999999999999987532211  11223556


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .|++||...+..++.++||||+||++|||+||+.||.+.....      ......... ...+.   .....+.+++.+|
T Consensus       158 ~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~------~~~~~~~~~-~~~~~---~~~~~~~~li~~~  227 (312)
T cd05585         158 EYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNE------MYRKILQEP-LRFPD---GFDRDAKDLLIGL  227 (312)
T ss_pred             ccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHH------HHHHHHcCC-CCCCC---cCCHHHHHHHHHH
Confidence            6888898888888999999999999999999999987543211      111111111 11111   2234577889999


Q ss_pred             ccCCCCCCCC---HHHHHHH
Q 002875          847 TRSTPSDRPS---MEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt---~~~v~~~  863 (872)
                      |+.||++||+   +.|++++
T Consensus       228 L~~dp~~R~~~~~~~e~l~h  247 (312)
T cd05585         228 LSRDPTRRLGYNGAQEIKNH  247 (312)
T ss_pred             cCCCHHHcCCCCCHHHHHcC
Confidence            9999999985   5666543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=3.6e-36  Score=316.28  Aligned_cols=244  Identities=16%  Similarity=0.219  Sum_probs=190.6

Q ss_pred             hhhhccCCCCCceeeeec----CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|..    ..+..||+|.++...  ...+.+.+|+..+++++|||||+++|++..++..++||||+
T Consensus         9 ~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   88 (266)
T cd05064           9 IERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYM   88 (266)
T ss_pred             EeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeC
Confidence            778899999999999975    346789999987542  23457888999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      ++|+|.+++..   ..++.+.+.++.|++.|++|||+.   +++||||||+||+++.++.+|++|||.+.........  
T Consensus        89 ~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~  165 (266)
T cd05064          89 SNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTT  165 (266)
T ss_pred             CCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCcccccccccchhcc
Confidence            99999999865   357889999999999999999998   9999999999999999999999999986543211111  


Q ss_pred             -CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          761 -FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       ...+...|.+||......++.++|||||||++||+++ |..||.+.....   ......+...   .+.+   ......
T Consensus       166 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~---~~~~~~~~~~---~~~~---~~~~~~  236 (266)
T cd05064         166 MSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQD---VIKAVEDGFR---LPAP---RNCPNL  236 (266)
T ss_pred             cCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH---HHHHHHCCCC---CCCC---CCCCHH
Confidence             1112234678888877888999999999999999775 888876432111   0001111100   1111   123345


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +.+++.+||+.+|++||+++|+.+.|+++
T Consensus       237 ~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         237 LHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             HHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            77899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=293.99  Aligned_cols=233  Identities=16%  Similarity=0.165  Sum_probs=189.6

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ....+|.|+||.|..++. .+|..+|+|+++++.    ++.+-...|..+|+++.||.+|++++.|.+.+..||
T Consensus        44 ~dfe--~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lym  121 (355)
T KOG0616|consen   44 QDFE--RLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYM  121 (355)
T ss_pred             hhhh--heeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEE
Confidence            3355  788999999999999885 568899999998643    345566789999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          681 LYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ||||.+||.|+.++++.  .+....+.++.||+.|++|||+.   +|++||+||+|||||.+|.+||+|||+|+..... 
T Consensus       122 vmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r-  197 (355)
T KOG0616|consen  122 VMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR-  197 (355)
T ss_pred             EEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEecCc-
Confidence            99999999999999984  45666788999999999999999   9999999999999999999999999999876544 


Q ss_pred             CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          759 GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      ..+.++++.|.+||+.....++..+|.|||||++|||+.|.+||++.....      ....+.... ...+..   ...+
T Consensus       198 T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~------iY~KI~~~~-v~fP~~---fs~~  267 (355)
T KOG0616|consen  198 TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQ------IYEKILEGK-VKFPSY---FSSD  267 (355)
T ss_pred             EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHH------HHHHHHhCc-ccCCcc---cCHH
Confidence            334457788999999999999999999999999999999999998765421      112222211 111111   2234


Q ss_pred             HHHHHHHcccCCCCCC
Q 002875          839 VLDVALLCTRSTPSDR  854 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~R  854 (872)
                      +.+++...++.|-.+|
T Consensus       268 ~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  268 AKDLLKKLLQVDLTKR  283 (355)
T ss_pred             HHHHHHHHHhhhhHhh
Confidence            5566777777788888

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=4.3e-36  Score=315.07  Aligned_cols=244  Identities=18%  Similarity=0.263  Sum_probs=194.6

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+++|+|+||.||+|...+++.||+|.+.......+.+.+|+.++++++||||+++++++.+.+..++||||+++|+|.
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   89 (261)
T cd05072          10 LVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLL   89 (261)
T ss_pred             EeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHH
Confidence            78899999999999999888899999998765556678899999999999999999999999999999999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---Cccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---FPAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---~~~~  764 (872)
                      ++++.    ..++.++..++.|+++|++|||+.   +++||||||+||++++++.+|++|||++.........   ....
T Consensus        90 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  166 (261)
T cd05072          90 DFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKF  166 (261)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCcc
Confidence            99864    347888899999999999999998   9999999999999999999999999998754322111   1112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||+.....++.++|||||||++|||+| |..||.......   ..........   .+..   .....++.+++
T Consensus       167 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~---~~~~~~~~~~---~~~~---~~~~~~~~~li  237 (261)
T cd05072         167 PIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSD---VMSALQRGYR---MPRM---ENCPDELYDIM  237 (261)
T ss_pred             ceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHH---HHHHHHcCCC---CCCC---CCCCHHHHHHH
Confidence            234677888777778889999999999999999 777765322111   0000111111   1111   12234677899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHccc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+|+..+|++||+++++.+.|+++
T Consensus       238 ~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         238 KTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             HHHccCCcccCcCHHHHHHHHhcC
Confidence            999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-36  Score=319.12  Aligned_cols=242  Identities=17%  Similarity=0.194  Sum_probs=197.9

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCe-eEEEEcc
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ-AYLLYDY  684 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~-~~lv~ey  684 (872)
                      |...+.+|+|+||.++.... .+++.||+|.+.....   .++...+|+.++++++|||||.+.+.++.++. .+|||||
T Consensus         6 Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y   85 (426)
T KOG0589|consen    6 YEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEY   85 (426)
T ss_pred             hhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEee
Confidence            34889999999999987664 4677999999976432   35577899999999999999999999998887 9999999


Q ss_pred             cCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--
Q 002875          685 LPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       685 ~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--  758 (872)
                      |+||++.+.|.+.    .+..+...++.|++.|+.|||+.   .|+|||||++||++..+..+|++|||+|+......  
T Consensus        86 ~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~  162 (426)
T KOG0589|consen   86 CEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSL  162 (426)
T ss_pred             cCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhcCCchhh
Confidence            9999999999763    35566789999999999999988   99999999999999999999999999999876553  


Q ss_pred             CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          759 GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      .....++++|++||...+.+|+.|+||||+||++|||++-+.+|.+.+...  .........+.+.    +   .....+
T Consensus       163 a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~--Li~ki~~~~~~Pl----p---~~ys~e  233 (426)
T KOG0589|consen  163 ASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSE--LILKINRGLYSPL----P---SMYSSE  233 (426)
T ss_pred             hheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHH--HHHHHhhccCCCC----C---ccccHH
Confidence            334458899999999999999999999999999999999988887544211  1111112222222    1   223345


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +..++..|++.+|+.||++.+++.+
T Consensus       234 l~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  234 LRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             HHHHHHHHhhcCCccCCCHHHHhhC
Confidence            7778889999999999999999875

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-36  Score=324.52  Aligned_cols=238  Identities=15%  Similarity=0.118  Sum_probs=190.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|++++++++||||+++++++.+.+..|+||||++
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~   84 (291)
T cd05612           5 RIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVP   84 (291)
T ss_pred             eeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCC
Confidence            778999999999999986 478999999997532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++...  .++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++....... ...+
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~-~~~g  160 (291)
T cd05612          85 GGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTW-TLCG  160 (291)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhccCCcc-cccC
Confidence            99999998753  46777888999999999999999   999999999999999999999999999875433221 2234


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ...|.+||...+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   .....+.+++.
T Consensus       161 t~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~li~  230 (291)
T cd05612         161 TPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFG------IYEKILAGK-LEFPR---HLDLYAKDLIK  230 (291)
T ss_pred             ChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCC-cCCCc---cCCHHHHHHHH
Confidence            455788898887788899999999999999999999987543211      011111111 11111   11345778999


Q ss_pred             HcccCCCCCCCC-----HHHHHHH
Q 002875          845 LCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      +||+.||.+||+     ++|++++
T Consensus       231 ~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         231 KLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             HHcCCCHHHccCCccCCHHHHhcC
Confidence            999999999995     8888866

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=6.1e-36  Score=324.66  Aligned_cols=249  Identities=16%  Similarity=0.166  Sum_probs=191.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||++.. .+|..||+|.+....  ...+.+.+|++++++++|||||++++++.+++..++||||+++|
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   88 (331)
T cd06649           9 RISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGG   88 (331)
T ss_pred             EEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCC
Confidence            788999999999999986 478899999987542  23567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccc
Q 002875          689 NLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA  766 (872)
Q Consensus       689 ~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~  766 (872)
                      +|.+++...  .++.....++.|++.|++|||+.+  +|+||||||+||+++.++.+||+|||+++...........+..
T Consensus        89 ~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~  166 (331)
T cd06649          89 SLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTR  166 (331)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCCc
Confidence            999999753  467788899999999999999852  6999999999999999999999999998654332222223455


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc---------c-------c--------------
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID---------G-------L--------------  816 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~---------~-------~--------------  816 (872)
                      .|.+||...+..++.++|||||||++|||+||+.||............         .       .              
T Consensus       167 ~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (331)
T cd06649         167 SYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMD  246 (331)
T ss_pred             CcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccccc
Confidence            677889888778899999999999999999999998643211000000         0       0              


Q ss_pred             ----------ccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          817 ----------LGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       817 ----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                                ...+....... .+ ......++.+++.+||+.||++|||++|++++-
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~  302 (331)
T cd06649         247 SRPAMAIFELLDYIVNEPPPK-LP-NGVFTPDFQEFVNKCLIKNPAERADLKMLMNHT  302 (331)
T ss_pred             cccchhHHHHHHHHHhCCCcC-CC-CccccHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence                      00000000000 00 011234678999999999999999999998764

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-36  Score=328.24  Aligned_cols=246  Identities=15%  Similarity=0.096  Sum_probs=192.9

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|+.. +|+.||||+++...    ...+.+.+|++++++++||||+++++++.+.+..|+||||++
T Consensus         5 ~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   84 (333)
T cd05600           5 ILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVP   84 (333)
T ss_pred             EEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCC
Confidence            7889999999999999964 68999999997532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..... .....+
T Consensus        85 g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~-~~~~~g  160 (333)
T cd05600          85 GGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTY-ANSVVG  160 (333)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCcccccc-cCCccc
Confidence            9999999975  347778889999999999999999   9999999999999999999999999998754331 122234


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||+..+..++.++||||+||++|||+||..||...................... .. .........++.+++.
T Consensus       161 t~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~~~~s~~~~~li~  238 (333)
T cd05600         161 SPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRP-VY-DDPRFNLSDEAWDLIT  238 (333)
T ss_pred             CccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCC-CC-CccccccCHHHHHHHH
Confidence            556788898887788999999999999999999999987543211100000000111110 00 0000123456778999


Q ss_pred             HcccCCCCCCCCHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +|+..+|.+||+++|++++
T Consensus       239 ~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         239 KLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             HHhhChhhhcCCHHHHHhC
Confidence            9999999999999999876

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.3e-36  Score=313.28  Aligned_cols=244  Identities=20%  Similarity=0.236  Sum_probs=194.7

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|++|.||+|...+++.||||.++......+.+.+|++++++++||||+++++++...+..|+||||+++|+|.
T Consensus        10 ~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   89 (261)
T cd05068          10 LLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLL   89 (261)
T ss_pred             eEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHH
Confidence            77899999999999999888889999999876556677889999999999999999999999999999999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc---
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK---  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~---  764 (872)
                      +++..    ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.+||+|||+++...........+   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  166 (261)
T cd05068          90 EYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKF  166 (261)
T ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcC
Confidence            99864    357889999999999999999998   99999999999999999999999999987654221111111   


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||+.....++.++|||||||++|||+| |+.||.+.....  ... .......   ...+   ......+.+++
T Consensus       167 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~--~~~-~~~~~~~---~~~~---~~~~~~~~~li  237 (261)
T cd05068         167 PIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAE--VLQ-QVDQGYR---MPCP---PGCPKELYDIM  237 (261)
T ss_pred             ceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH--HHH-HHHcCCC---CCCC---CcCCHHHHHHH
Confidence            123677888777778899999999999999999 776665322111  000 0000000   0011   12235678899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHccc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+|++.||++||+++++.+.|+.+
T Consensus       238 ~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         238 LDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             HHHhhcCcccCCCHHHHHHHHhcC
Confidence            999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7e-38  Score=326.57  Aligned_cols=369  Identities=21%  Similarity=0.221  Sum_probs=310.3

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ...-+.|||++|+++.+.+..|.++++|+.+++.+|.+. .+|..-....+|+.|+|.+|.|+.+-.+++..++.|+.||
T Consensus        77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            345678999999999999999999999999999999997 6787667777899999999999988888899999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      ||.|.|+.+.-.+|..=.++++|+|++|+|+......|..+.+|..|.++.|.++...+..|.++++|+.|||..|.|..
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            99999998777788888899999999999999999999999999999999999998778888899999999999999875


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      .---.|..|++|+.|.|..|.+.......|-.+..+++|+|..|+++..-..++.+++.|+.|++|+|.|..+-++.+.-
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            44567888999999999999999888888999999999999999999888889999999999999999999888888888


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCC---CCCCCCCCCc
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLS---PSLSNCSSLV  333 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~---~~~~~l~~L~  333 (872)
                      .++|++|+|++|+++...+..|..++.|+.|.+++|.+...-...|..+.+|+.|++.+|.+...+.   ..|.+++.|+
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence            8999999999999998888889999999999999998864333334445667777777776655443   2356677777


Q ss_pred             EEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccC
Q 002875          334 RLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSN  387 (872)
Q Consensus       334 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  387 (872)
                      .|++.+|++..+....|.++++|+.|||.+|.+...-|.+|..+ .|+.|.++.
T Consensus       396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            77777777766655667777777777777777766666666665 666665543

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.4e-35  Score=311.35  Aligned_cols=244  Identities=21%  Similarity=0.263  Sum_probs=193.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.+|+|+||.||+|.. .+++.||+|.++......+.+.+|++.+++++||||++++++|..++..++||||+++|+|
T Consensus        10 ~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   89 (263)
T cd05052          10 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL   89 (263)
T ss_pred             EeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcH
Confidence            678899999999999986 4688999999986655667788999999999999999999999999999999999999999


Q ss_pred             HHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc---
Q 002875          691 SEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA---  763 (872)
Q Consensus       691 ~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~---  763 (872)
                      .+++..    ..++..+..++.|+++||+|||+.   +++||||||+||++++++.+||+|||++............   
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~  166 (263)
T cd05052          90 LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK  166 (263)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCC
Confidence            999864    357888899999999999999998   9999999999999999999999999998754332211111   


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      ....|.+||...+..++.++|||||||++|||+| |..|+..... ...  .........   ...+   ......+.++
T Consensus       167 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~-~~~--~~~~~~~~~---~~~~---~~~~~~~~~l  237 (263)
T cd05052         167 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-SQV--YELLEKGYR---MERP---EGCPPKVYEL  237 (263)
T ss_pred             CccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH-HHH--HHHHHCCCC---CCCC---CCCCHHHHHH
Confidence            1223677888877788899999999999999999 7777654321 110  000111111   1111   1123467789


Q ss_pred             HHHcccCCCCCCCCHHHHHHHHccc
Q 002875          843 ALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +.+||+.||++|||+.|+.+.|+.+
T Consensus       238 i~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         238 MRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             HHHHccCCcccCCCHHHHHHHHHhh
Confidence            9999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-37  Score=289.54  Aligned_cols=243  Identities=19%  Similarity=0.206  Sum_probs=193.8

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..++||+|+|+.||++. .++|+.+|+|.+...   +...+.+.+|+++-+.++|||||++++.+.+.+..|+|+|+|.|
T Consensus        15 l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G   94 (355)
T KOG0033|consen   15 VKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTG   94 (355)
T ss_pred             HHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccc
Confidence            88999999999999987 478999999998643   33567788999999999999999999999999999999999999


Q ss_pred             CChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC---CCeeEccccccccccccCC-CC
Q 002875          688 GNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN---MEPHLAEFGFKYLTQLADG-SF  761 (872)
Q Consensus       688 g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~---~~~ki~dfg~~~~~~~~~~-~~  761 (872)
                      |+|..-|-.+.  +....-.++.||++||.|+|.+   +|||||+||.|+++.+.   ..+|++|||+|........ ..
T Consensus        95 ~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G  171 (355)
T KOG0033|consen   95 GELFEDIVAREFYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHG  171 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccceEEEeCCcccccc
Confidence            99987664432  3344557889999999999999   99999999999999643   4599999999987653221 12


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..+++.+++||+....+++..+|||+-|||+|-++.|..||++.+...  .+.+.....++-.    ++.++...++..+
T Consensus       172 ~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~r--lye~I~~g~yd~~----~~~w~~is~~Ak~  245 (355)
T KOG0033|consen  172 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR--LYEQIKAGAYDYP----SPEWDTVTPEAKS  245 (355)
T ss_pred             ccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHH--HHHHHhccccCCC----CcccCcCCHHHHH
Confidence            336777889999999999999999999999999999999999743211  1111122222221    3344445566778


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+|+..||++|.|+.|++++
T Consensus       246 LvrrML~~dP~kRIta~EAL~H  267 (355)
T KOG0033|consen  246 LIRRMLTVNPKKRITADEALKH  267 (355)
T ss_pred             HHHHHhccChhhhccHHHHhCC
Confidence            8999999999999999998765

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=2e-36  Score=316.48  Aligned_cols=241  Identities=23%  Similarity=0.338  Sum_probs=180.2

Q ss_pred             hhhhccCCCCCceeeeecC-----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLP-----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.||.|.||.||+|+..     .+..||||.++...  ...+.+.+|++.+++++||||++++|+|...+..++||||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            3567999999999999875     36789999996532  2367889999999999999999999999988889999999


Q ss_pred             cCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          685 LPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       685 ~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      |++|+|.+++...    .++.++..|+.|+++||+|||+.   +|+|+||+++||++++++.+||+|||++........ 
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~  159 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKY  159 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            9999999999774    57899999999999999999999   999999999999999999999999999876521111 


Q ss_pred             ---CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcC-CCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          760 ---SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN-GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       760 ---~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                         ........+.+||......++.++||||||+++||++|+ +.|+.+.. ..  .   ....+.+......+.   ..
T Consensus       160 ~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~-~~--~---~~~~~~~~~~~~~~~---~~  230 (259)
T PF07714_consen  160 KNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD-NE--E---IIEKLKQGQRLPIPD---NC  230 (259)
T ss_dssp             EESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC-HH--H---HHHHHHTTEETTSBT---TS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-cc--c---ccccccccccceecc---ch
Confidence               111122235578888777789999999999999999994 56654321 11  1   111111111111111   12


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ...+.+++.+||+.||++||||.|+++.|
T Consensus       231 ~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  231 PKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             BHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             hHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            34577899999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.8e-35  Score=309.10  Aligned_cols=242  Identities=17%  Similarity=0.206  Sum_probs=191.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...++..||||.+.......+.+.+|+.++++++||||++++++|.+.+..++||||+++|+|.
T Consensus         8 ~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~   87 (256)
T cd05113           8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLL   87 (256)
T ss_pred             EeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHH
Confidence            67889999999999998877778999998765555677889999999999999999999999888999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---cccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAKI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~~  765 (872)
                      +++..   ..++.+++.++.|++.|++|||+.   +++||||||+||+++.++.+||+|||.++.........   ..+.
T Consensus        88 ~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~  164 (256)
T cd05113          88 NYLREHGKRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFP  164 (256)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccC
Confidence            99864   358889999999999999999998   99999999999999999999999999986543221111   1122


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||...+..++.++|||||||++|||+| |..||.......   .....   ..........   .....+.+++.
T Consensus       165 ~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~---~~~~~---~~~~~~~~~~---~~~~~~~~li~  235 (256)
T cd05113         165 VRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSE---TVEKV---SQGLRLYRPH---LASEKVYAIMY  235 (256)
T ss_pred             hhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH---HHHHH---hcCCCCCCCC---CCCHHHHHHHH
Confidence            34677888777778889999999999999999 777775332111   00001   1100000011   12356789999


Q ss_pred             HcccCCCCCCCCHHHHHHHHc
Q 002875          845 LCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      +||+.||++||++.++++.++
T Consensus       236 ~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         236 SCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             HHcCCCcccCCCHHHHHHhhC
Confidence            999999999999999998774

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-35  Score=308.29  Aligned_cols=241  Identities=20%  Similarity=0.225  Sum_probs=190.7

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...++..+|||.+.......+.+.+|++++++++||||+++++++...+..|+||||+++|+|.
T Consensus         8 ~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   87 (256)
T cd05059           8 FLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLL   87 (256)
T ss_pred             hhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHH
Confidence            78899999999999999887889999998765555667888999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc---cc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA---KI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~---~~  765 (872)
                      +++..   ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.+|++|||+++...........   ..
T Consensus        88 ~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  164 (256)
T cd05059          88 NYLRERKGKLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFP  164 (256)
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCC
Confidence            99864   347888999999999999999999   9999999999999999999999999998654322111111   11


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||......++.++|||||||++|||+| |..||........   ..........   ..+.   ....++.+++.
T Consensus       165 ~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~---~~~~~~~~~~---~~~~---~~~~~~~~li~  235 (256)
T cd05059         165 VKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEV---VESVSAGYRL---YRPK---LAPTEVYTIMY  235 (256)
T ss_pred             ccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHH---HHHHHcCCcC---CCCC---CCCHHHHHHHH
Confidence            23677888877788889999999999999999 5666643221110   0001111000   0011   12346889999


Q ss_pred             HcccCCCCCCCCHHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      +||..+|++|||++|+++.|
T Consensus       236 ~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         236 SCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             HHhcCChhhCcCHHHHHHHh
Confidence            99999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=4.3e-36  Score=325.31  Aligned_cols=238  Identities=12%  Similarity=0.104  Sum_probs=190.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||.+....    ...+.+.+|+.++++++|||||++++++.+++..|+||||++
T Consensus        22 ~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  101 (329)
T PTZ00263         22 MGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVV  101 (329)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCC
Confidence            788999999999999986 578999999997532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++...  .++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ...+
T Consensus       102 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~g  177 (329)
T PTZ00263        102 GGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTF-TLCG  177 (329)
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcCCCcc-eecC
Confidence            99999999764  46677788999999999999999   999999999999999999999999999875433221 2234


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||...+..++.++|||||||++|||+||..||.+.....      ....+.... ...+..   ...++.+++.
T Consensus       178 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~------~~~~i~~~~-~~~p~~---~~~~~~~li~  247 (329)
T PTZ00263        178 TPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFR------IYEKILAGR-LKFPNW---FDGRARDLVK  247 (329)
T ss_pred             ChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHH------HHHHHhcCC-cCCCCC---CCHHHHHHHH
Confidence            556788898888788899999999999999999999987543211      001111111 111111   1235678999


Q ss_pred             HcccCCCCCCCC-----HHHHHHH
Q 002875          845 LCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      +||+.||++||+     ++|++++
T Consensus       248 ~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        248 GLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             HHhhcCHHHcCCCCCCCHHHHhcC
Confidence            999999999997     6888755

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=7.4e-36  Score=323.13  Aligned_cols=236  Identities=13%  Similarity=0.076  Sum_probs=187.3

Q ss_pred             hccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          615 EAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      .||+|+||.||++.. .+|+.||||++....    .....+.+|++++++++||||+++++++.+++..|+||||+++|+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~   81 (328)
T cd05593           2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGE   81 (328)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCC
Confidence            589999999999985 578999999997532    234567789999999999999999999999999999999999999


Q ss_pred             hHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          690 LSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       690 L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      |.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ....++
T Consensus        82 L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt  158 (328)
T cd05593          82 LFFHLSRERVFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGT  158 (328)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCC
Confidence            9998865  357888899999999999999999   999999999999999999999999999864322111  112245


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||......++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+++.+
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~------~~~~~~~~~-~~~p~---~~~~~~~~li~~  228 (328)
T cd05593         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK------LFELILMED-IKFPR---TLSADAKSLLSG  228 (328)
T ss_pred             cCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHH------HHHHhccCC-ccCCC---CCCHHHHHHHHH
Confidence            56788898887788999999999999999999999987543211      001111111 11111   123457788899


Q ss_pred             cccCCCCCCC-----CHHHHHHH
Q 002875          846 CTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      ||+.||++||     +++|++++
T Consensus       229 ~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         229 LLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             HcCCCHHHcCCCCCCCHHHHhcC
Confidence            9999999997     89998865

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=5.7e-36  Score=323.46  Aligned_cols=237  Identities=12%  Similarity=0.078  Sum_probs=186.8

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      +.+|+|+||.||++.. .+|+.||+|+++...    .....+.+|++++++++||||+++++++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3689999999999985 579999999997532    23445678999999999999999999999999999999999999


Q ss_pred             ChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccc
Q 002875          689 NLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAK  764 (872)
Q Consensus       689 ~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~  764 (872)
                      +|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ....+
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g  157 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCG  157 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccC
Confidence            999988653  57888899999999999999999   999999999999999999999999999864321111  11224


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||...+..++.++|||||||++|||+||+.||.......      ....+.... ...+.   .....+.+++.
T Consensus       158 t~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~------~~~~~~~~~-~~~p~---~~~~~~~~li~  227 (323)
T cd05595         158 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER------LFELILMEE-IRFPR---TLSPEAKSLLA  227 (323)
T ss_pred             CcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHH------HHHHHhcCC-CCCCC---CCCHHHHHHHH
Confidence            556778898877788999999999999999999999987543211      011111111 11111   12345678899


Q ss_pred             HcccCCCCCCC-----CHHHHHHH
Q 002875          845 LCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +||+.||++||     ++.+++++
T Consensus       228 ~~L~~dP~~R~~~~~~~~~~~l~h  251 (323)
T cd05595         228 GLLKKDPKQRLGGGPSDAKEVMEH  251 (323)
T ss_pred             HHccCCHHHhCCCCCCCHHHHHcC
Confidence            99999999998     88888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1e-35  Score=328.10  Aligned_cols=248  Identities=18%  Similarity=0.214  Sum_probs=189.0

Q ss_pred             chhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEE
Q 002875          611 TECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv  681 (872)
                      ...+.||+|+||.||+|+.      ..+..||||+++...  ...+.+.+|+++++++. |||||+++|+|.+.+..|+|
T Consensus        40 ~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv  119 (400)
T cd05105          40 VLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYII  119 (400)
T ss_pred             ehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEE
Confidence            3789999999999999974      234579999997532  23567889999999996 99999999999999999999


Q ss_pred             EcccCCCChHHHhhCC----------------------------------------------------------------
Q 002875          682 YDYLPNGNLSEKIRTK----------------------------------------------------------------  697 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~----------------------------------------------------------------  697 (872)
                      ||||++|+|.+++...                                                                
T Consensus       120 ~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (400)
T cd05105         120 TEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASK  199 (400)
T ss_pred             EEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhh
Confidence            9999999999987531                                                                


Q ss_pred             ----------------------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCe
Q 002875          698 ----------------------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP  743 (872)
Q Consensus       698 ----------------------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~  743 (872)
                                                        .++.+...++.|+++|++|||+.   +|+||||||+||++++++.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp~Nill~~~~~~  276 (400)
T cd05105         200 YSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAARNVLLAQGKIV  276 (400)
T ss_pred             hhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHhEEEeCCCEE
Confidence                                              34556678999999999999998   99999999999999999999


Q ss_pred             eEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccc
Q 002875          744 HLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLG  818 (872)
Q Consensus       744 ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~  818 (872)
                      ||+|||+++........    ...+...|.+||...+..++.++|||||||++|||+| |+.||........  ...   
T Consensus       277 kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~--~~~---  351 (400)
T cd05105         277 KICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDST--FYN---  351 (400)
T ss_pred             EEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHH--HHH---
Confidence            99999998754322111    1112233667787777778899999999999999997 7777764321110  000   


Q ss_pred             ccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          819 EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .+.......   ........+.+++.+||+.||++|||+.++.++|+.+-+
T Consensus       352 ~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         352 KIKSGYRMA---KPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             HHhcCCCCC---CCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence            000000000   111233567899999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.7e-35  Score=324.25  Aligned_cols=241  Identities=17%  Similarity=0.204  Sum_probs=184.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|+. .+|+.||||++....  ...+.+.+|++++++++|+|||++++++.+.+..++||||+++|
T Consensus        78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  157 (353)
T PLN00034         78 RVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGG  157 (353)
T ss_pred             hhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCC
Confidence            678899999999999985 578999999986432  23567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccccc
Q 002875          689 NLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIA  766 (872)
Q Consensus       689 ~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~  766 (872)
                      +|.+..  .........++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.......  ....+..
T Consensus       158 ~L~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~  232 (353)
T PLN00034        158 SLEGTH--IADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTI  232 (353)
T ss_pred             cccccc--cCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCc
Confidence            997643  235566778999999999999999   999999999999999999999999999875432211  1223455


Q ss_pred             ccCchhhhcc-----cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          767 WTESGEFYNA-----MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       767 ~~~~~e~~~~-----~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      +|.+||.+..     ...+.++|||||||++|||++|+.||...... .+..  ...........   ........++.+
T Consensus       233 ~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~-~~~~--~~~~~~~~~~~---~~~~~~~~~l~~  306 (353)
T PLN00034        233 AYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQG-DWAS--LMCAICMSQPP---EAPATASREFRH  306 (353)
T ss_pred             cccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCc-cHHH--HHHHHhccCCC---CCCCccCHHHHH
Confidence            5777786532     23456899999999999999999998732211 1110  00000000000   011123356788


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+||+.||++|||++|++++
T Consensus       307 li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        307 FISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             HHHHHccCChhhCcCHHHHhcC
Confidence            9999999999999999999976

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1e-35  Score=316.58  Aligned_cols=248  Identities=17%  Similarity=0.195  Sum_probs=186.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||+|.. .+|+.||+|.++...  .....+.+|++++++++||||+++++++.+.+..++||||+++ 
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~-   87 (288)
T cd07871           9 KLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDS-   87 (288)
T ss_pred             EeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCCc-
Confidence            788999999999999986 578999999986532  2244667899999999999999999999999999999999984 


Q ss_pred             ChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          689 NLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       689 ~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      +|.+++...   .++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++........  ...
T Consensus        88 ~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~  164 (288)
T cd07871          88 DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEV  164 (288)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCce
Confidence            999988643   46778889999999999999998   9999999999999999999999999998654322211  122


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccc---cccccccccc
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPID---GLLGEMYNEN  824 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~---~~~~~~~~~~  824 (872)
                      +..+|.+||...+ ..++.++||||+||++|||+||+.||........               +...   ..+.....+.
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (288)
T cd07871         165 VTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQ  244 (288)
T ss_pred             ecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCc
Confidence            4556778887644 5678899999999999999999999865432110               0000   0000000000


Q ss_pred             ccCCC--CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSS--SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~--~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .....  ........+.++++.+|++.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~h  285 (288)
T cd07871         245 YRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRH  285 (288)
T ss_pred             cCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            00000  0001123467899999999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=1.8e-35  Score=320.89  Aligned_cols=191  Identities=16%  Similarity=0.176  Sum_probs=162.5

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||++... +|+.||+|.+....  ...+.+.+|++++++++|||||+++++|.++++.++||||+++|
T Consensus         9 ~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   88 (333)
T cd06650           9 KISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGG   88 (333)
T ss_pred             eeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCC
Confidence            7889999999999999864 78899999987542  23456889999999999999999999999999999999999999


Q ss_pred             ChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccc
Q 002875          689 NLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA  766 (872)
Q Consensus       689 ~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~  766 (872)
                      +|.+++...  .++.....++.|++.|++|||+.+  +|+||||||+||++++++.+||+|||++............+..
T Consensus        89 ~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~  166 (333)
T cd06650          89 SLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTR  166 (333)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccCCCCc
Confidence            999999753  467777899999999999999742  7999999999999999999999999998654322222223445


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCC
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA  804 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~  804 (872)
                      .|.+||...+..++.++|||||||++|||++|+.||..
T Consensus       167 ~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         167 SYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             cccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            57788888877888999999999999999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=6e-36  Score=281.66  Aligned_cols=248  Identities=21%  Similarity=0.230  Sum_probs=192.2

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecC-----CeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----HQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lv~ey  684 (872)
                      +.+.+|+|+|+.||.+. +.++..+|+|++.... .+.+...+|++.-++++||||+++++++..+     .+.||+++|
T Consensus        25 i~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Py  104 (302)
T KOG2345|consen   25 IQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPY  104 (302)
T ss_pred             EeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeeh
Confidence            88999999999999998 6899999999998765 4577889999999999999999999987543     469999999


Q ss_pred             cCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          685 LPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       685 ~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      +..|+|.+.+..      ..+..+.+.|+.++++||++||.. .|+..||||||.|||+.+.+.+++.|||-+......-
T Consensus       105 y~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i  183 (302)
T KOG2345|consen  105 YKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQI  183 (302)
T ss_pred             hccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccccceEe
Confidence            999999999865      347788899999999999999987 5579999999999999999999999999875432110


Q ss_pred             C------------CCcccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-cccccccccc
Q 002875          759 G------------SFPAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-IDGLLGEMYN  822 (872)
Q Consensus       759 ~------------~~~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-~~~~~~~~~~  822 (872)
                      .            ...++.+ |.+||.+.   +.-.+.++||||+||++|+|+.|..||......-... ....-.++..
T Consensus       184 ~~~~~a~~lQe~a~e~Ct~p-yRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~  262 (302)
T KOG2345|consen  184 EGSRQALRLQEWAEERCTIP-YRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISI  262 (302)
T ss_pred             echHHHHHHHHHHHHhCCCc-ccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeecccccc
Confidence            0            0112334 55667654   3457888999999999999999999997432211100 1111112221


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.    ..   ...+.+.+++..|++.||.+||++.|++.+++.+.
T Consensus       263 P~----~~---~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  263 PN----SS---RYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             CC----CC---CccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence            21    11   13456788999999999999999999999987653

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.2e-35  Score=322.22  Aligned_cols=238  Identities=13%  Similarity=0.066  Sum_probs=189.0

Q ss_pred             hhhhccCCCCCceeeeecC-C-CcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP-T-GITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~-g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|... + +..||||++....    ...+.+.+|+.+++.++|||||++++++.+++..|+||||+
T Consensus        34 ~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~  113 (340)
T PTZ00426         34 FIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFV  113 (340)
T ss_pred             EEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCC
Confidence            7889999999999999853 3 3689999986432    23456788999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc
Q 002875          686 PNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA  763 (872)
Q Consensus       686 ~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~  763 (872)
                      ++|+|.+++...  .++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...... ....
T Consensus       114 ~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~-~~~~  189 (340)
T PTZ00426        114 IGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRT-YTLC  189 (340)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCeecCCCc-ceec
Confidence            999999999753  46778889999999999999999   99999999999999999999999999987643222 2223


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|++||+..+..++.++||||+||++|||+||..||.......  .    ...+.... ...+..   ....+.+++
T Consensus       190 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~--~----~~~i~~~~-~~~p~~---~~~~~~~li  259 (340)
T PTZ00426        190 GTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLL--I----YQKILEGI-IYFPKF---LDNNCKHLM  259 (340)
T ss_pred             CChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHH--H----HHHHhcCC-CCCCCC---CCHHHHHHH
Confidence            4556788898887778899999999999999999999997543211  0    01111111 111111   123467889


Q ss_pred             HHcccCCCCCCC-----CHHHHHHH
Q 002875          844 LLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      .+|++.||++|+     +++|++++
T Consensus       260 ~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        260 KKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             HHHcccCHHHcCCCCCCCHHHHHcC
Confidence            999999999995     89998876

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=2.5e-35  Score=312.21  Aligned_cols=239  Identities=13%  Similarity=0.100  Sum_probs=185.5

Q ss_pred             ccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          616 AARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       616 ~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ||+|+||+||++.. .+|+.||||.+.....    ..+.+..|++++++++||||+++.+++.+++..|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            68999999999985 5789999999975322    234567899999999999999999999999999999999999999


Q ss_pred             HHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Cc
Q 002875          691 SEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FP  762 (872)
Q Consensus       691 ~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~  762 (872)
                      .+++..      ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++.........  ..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGY  157 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcccccc
Confidence            988742      357788899999999999999999   9999999999999999999999999998654332211  11


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      .++..|.+||...+..++.++|||||||++|||+||+.||.........  ........... ..   ........+.++
T Consensus       158 ~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~--~~~~~~~~~~~-~~---~~~~~~~~~~~l  231 (280)
T cd05608         158 AGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN--KELKQRILNDS-VT---YPDKFSPASKSF  231 (280)
T ss_pred             CCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhH--HHHHHhhcccC-CC---CcccCCHHHHHH
Confidence            2445577889888888889999999999999999999998743321110  00011111111 11   111233567789


Q ss_pred             HHHcccCCCCCCC-----CHHHHHHH
Q 002875          843 ALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +.+||+.||++||     ++++++++
T Consensus       232 i~~~l~~~P~~R~~~~~~~~~~~l~h  257 (280)
T cd05608         232 CEALLAKDPEKRLGFRDGNCDGLRTH  257 (280)
T ss_pred             HHHHhcCCHHHhcCCCCCCHHHHhcC
Confidence            9999999999999     77888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=3.8e-35  Score=311.91  Aligned_cols=244  Identities=20%  Similarity=0.268  Sum_probs=190.5

Q ss_pred             hhhhccCCCCCceeeeecCC------CcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLPT------GITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~------g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.+|+|+||.||+|....      ++.||+|.+....  ...+.+.+|+..+++++||||+++++++...+..++|||
T Consensus         9 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e   88 (283)
T cd05048           9 FLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFE   88 (283)
T ss_pred             hhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEe
Confidence            78899999999999997532      3689999986532  234568899999999999999999999999899999999


Q ss_pred             ccCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeE
Q 002875          684 YLPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL  745 (872)
Q Consensus       684 y~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki  745 (872)
                      |+++|+|.+++...                  .++.+...++.|++.|++|||+.   +|+||||||+||++++++.+||
T Consensus        89 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~~~~~~~L  165 (283)
T cd05048          89 YLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKI  165 (283)
T ss_pred             cCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEcCCCcEEE
Confidence            99999999998642                  35677889999999999999999   9999999999999999999999


Q ss_pred             ccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccc
Q 002875          746 AEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       746 ~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      +|||+++.......    ........|.+||......++.++|||||||++|||+| |..||.+.....      ....+
T Consensus       166 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~------~~~~i  239 (283)
T cd05048         166 SDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQE------VIEMI  239 (283)
T ss_pred             CCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHH------HHHHH
Confidence            99999865422211    11112334677887777778899999999999999998 888886433211      01111


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .... .  .........++.+++.+||+.||++||+++|++++|+++
T Consensus       240 ~~~~-~--~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         240 RSRQ-L--LPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             HcCC-c--CCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            1111 1  111123345688999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=3.2e-35  Score=309.60  Aligned_cols=248  Identities=13%  Similarity=0.151  Sum_probs=193.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|+. .+|+.||||.+...    ......+.+|++++++++||||+++++++.+.+..++||||++
T Consensus         6 i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   85 (267)
T cd08228           6 IEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELAD   85 (267)
T ss_pred             eeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecC
Confidence            788899999999999985 57899999987542    2234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          687 NGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       687 ~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      +|+|.+++..      ..+..+...++.|+++|++|||+.   +++||||||+||+++.++.++++|||++.........
T Consensus        86 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~  162 (267)
T cd08228          86 AGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA  162 (267)
T ss_pred             CCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccceeccchhHH
Confidence            9999988842      246677889999999999999998   9999999999999999999999999998654322111


Q ss_pred             --CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          761 --FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       761 --~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                        ...+...+.+||...+...+.++|||||||++|||+||+.|+......... ..........   .  +.........
T Consensus       163 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~-~~~~~~~~~~---~--~~~~~~~~~~  236 (267)
T cd08228         163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFS-LCQKIEQCDY---P--PLPTEHYSEK  236 (267)
T ss_pred             HhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHH-HHHHHhcCCC---C--CCChhhcCHH
Confidence              112334567788877777888999999999999999999998644321100 0011111000   0  0011223456


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.+|++||+++||++.++.++
T Consensus       237 ~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         237 LRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             HHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            789999999999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.5e-35  Score=320.30  Aligned_cols=237  Identities=15%  Similarity=0.141  Sum_probs=185.8

Q ss_pred             hhccCCCCCceeeeec----CCCcEEEEEEeeccc-----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          614 EEAARPQSAAGCKAVL----PTGITVSVKKIEWGA-----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      +.||+|+||.||++..    .+|+.||||.++...     .....+.+|+.++++++||||+++++++.+++..|+||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5789999999999975    468899999997532     2234567899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--C
Q 002875          685 LPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--S  760 (872)
Q Consensus       685 ~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~  760 (872)
                      +++|+|.+++...  ..+.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  .
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  158 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTH  158 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCccc
Confidence            9999999998654  35677778999999999999999   999999999999999999999999999864322111  1


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+...|.+||......++.++||||+||++|||+||+.||.......      ....+.... ...++   .....+.
T Consensus       159 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~------~~~~~~~~~-~~~~~---~~~~~~~  228 (323)
T cd05584         159 TFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK------TIDKILKGK-LNLPP---YLTPEAR  228 (323)
T ss_pred             ccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHH
Confidence            1234556788898877778889999999999999999999987543211      011111111 11111   1234577


Q ss_pred             HHHHHcccCCCCCCC-----CHHHHHHH
Q 002875          841 DVALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +++.+||+.||++||     ++++++++
T Consensus       229 ~li~~~l~~~p~~R~~~~~~~~~~l~~h  256 (323)
T cd05584         229 DLLKKLLKRNPSSRLGAGPGDAAEVQSH  256 (323)
T ss_pred             HHHHHHcccCHhHcCCCCCCCHHHHhcC
Confidence            899999999999999     78888764

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=2.3e-35  Score=314.26  Aligned_cols=248  Identities=17%  Similarity=0.184  Sum_probs=188.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||.||+|+. .+|+.||||+++...   ...+.+.+|++++++++||||+++++++..++..|+||||+++
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   84 (287)
T cd07848           5 VLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEK   84 (287)
T ss_pred             EEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCC
Confidence            778899999999999997 468899999997532   2345678899999999999999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---CCc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---SFP  762 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~~~  762 (872)
                      +.+..+...  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......   ...
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  161 (287)
T cd07848          85 NMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEY  161 (287)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCccccccccccccccc
Confidence            877665543  457788889999999999999998   999999999999999999999999999875432211   112


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-ccc-----------------cccccccc
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DGL-----------------LGEMYNEN  824 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~~-----------------~~~~~~~~  824 (872)
                      .+...|.+||+..+..++.++||||+||++|||++|+.||........... ...                 ......+.
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (287)
T cd07848         162 VATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPA  241 (287)
T ss_pred             ccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCc
Confidence            244557888988777788999999999999999999998875322110000 000                 00000000


Q ss_pred             ccCCCCc-----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSSS-----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~~-----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ......     .......+.+++.+||+.||++|||++|++++
T Consensus       242 -~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~h  284 (287)
T cd07848         242 -VNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNH  284 (287)
T ss_pred             -ccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence             000000     01134568899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-36  Score=291.04  Aligned_cols=244  Identities=15%  Similarity=0.202  Sum_probs=200.4

Q ss_pred             cCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          608 FNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      |.  ..+++|+|.||.||||.. .+|..||||++... ...+++.+||.+|++.+.|+||++||.|......++|||||.
T Consensus        35 FD--i~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~-sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCG  111 (502)
T KOG0574|consen   35 FD--IVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD-TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCG  111 (502)
T ss_pred             HH--HHHHhcCCcchHHHHHHHhccCcEEEEEecCcc-chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcC
Confidence            55  889999999999999985 78999999998643 345677889999999999999999999998889999999999


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      .|+..+.++.   .+...+...+....++||+|||..   .-+|||||+.|||++.+|.+|++|||.|.......  ...
T Consensus       112 AGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNT  188 (502)
T KOG0574|consen  112 AGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNT  188 (502)
T ss_pred             CCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCc
Confidence            9999999875   346677788999999999999998   88999999999999999999999999986543322  123


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..+++++++||++....|.+++||||+|+...||+.|++|+.+-......       -++...+++.....+....++-+
T Consensus       189 VIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAI-------FMIPT~PPPTF~KPE~WS~~F~D  261 (502)
T KOG0574|consen  189 VIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAI-------FMIPTKPPPTFKKPEEWSSEFND  261 (502)
T ss_pred             cccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccccccee-------EeccCCCCCCCCChHhhhhHHHH
Confidence            34778888999998888999999999999999999999887654332211       12222323333334555677889


Q ss_pred             HHHHcccCCCCCCCCHHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ++..|+.+.|++|-|+.+++++-
T Consensus       262 Fi~~CLiK~PE~R~TA~~L~~H~  284 (502)
T KOG0574|consen  262 FIRSCLIKKPEERKTALRLCEHT  284 (502)
T ss_pred             HHHHHhcCCHHHHHHHHHHhhhh
Confidence            99999999999999999988763

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=5.3e-35  Score=310.68  Aligned_cols=252  Identities=18%  Similarity=0.229  Sum_probs=191.1

Q ss_pred             hhhhccCCCCCceeeee-----cCCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAV-----LPTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-----~~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~  682 (872)
                      ..+.+|+|+||+||.+.     ..+|+.||+|.+....  ...+.+.+|++.+++++||||++++++|...  ...++||
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   87 (283)
T cd05080           8 KIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIM   87 (283)
T ss_pred             eceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEe
Confidence            67889999999997754     3578899999987542  2456778899999999999999999998753  4689999


Q ss_pred             cccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          683 DYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       683 ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      ||+++|+|.+++.. ..++.++..++.|++.|++|||+.   +|+||||||+||++++++.+|++|||+++........ 
T Consensus        88 e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~  164 (283)
T cd05080          88 EYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY  164 (283)
T ss_pred             cCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecccccccCCcchhh
Confidence            99999999999875 568999999999999999999999   9999999999999999999999999998754322111 


Q ss_pred             ----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc--------ccccccccccccCC
Q 002875          761 ----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID--------GLLGEMYNENEVGS  828 (872)
Q Consensus       761 ----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  828 (872)
                          ...+...+.+||......++.++|||||||++|||+||..|+............        ....+..+....  
T Consensus       165 ~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  242 (283)
T cd05080         165 RVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMR--  242 (283)
T ss_pred             ccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCC--
Confidence                111233456778777777889999999999999999999887533211000000        000000000000  


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .+........+.+++.+||+.||++|||++++++.|+.++
T Consensus       243 ~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         243 LPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             CCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            0001122356889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.4e-35  Score=319.98  Aligned_cols=247  Identities=22%  Similarity=0.244  Sum_probs=188.9

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecC-CeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR-HQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-~~~~lv  681 (872)
                      ..+.||+|+||.||+|..      .+++.||+|+++...  ...+.+.+|+.++.++ +||||++++++|... ...++|
T Consensus        11 i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v   90 (337)
T cd05054          11 LGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (337)
T ss_pred             hhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEE
Confidence            789999999999999963      346799999987432  2345677899999999 899999999998754 578899


Q ss_pred             EcccCCCChHHHhhC---------------------------------------------------------------CC
Q 002875          682 YDYLPNGNLSEKIRT---------------------------------------------------------------KR  698 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~---------------------------------------------------------------~~  698 (872)
                      |||+++|+|.+++..                                                               ..
T Consensus        91 ~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (337)
T cd05054          91 VEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPL  170 (337)
T ss_pred             EecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCC
Confidence            999999999998853                                                               34


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC----CcccccccCchhhh
Q 002875          699 DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS----FPAKIAWTESGEFY  774 (872)
Q Consensus       699 ~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~  774 (872)
                      +|..+..++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++........    ...+...|.+||+.
T Consensus       171 ~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~  247 (337)
T cd05054         171 TLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESI  247 (337)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHh
Confidence            6788889999999999999998   9999999999999999999999999998754322111    11122346778888


Q ss_pred             cccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCC
Q 002875          775 NAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSD  853 (872)
Q Consensus       775 ~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~  853 (872)
                      .+..++.++|||||||++|||+| |..||........  ....+.....   ...+   .....++.+++.+||+.+|++
T Consensus       248 ~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~--~~~~~~~~~~---~~~~---~~~~~~~~~l~~~cl~~~p~~  319 (337)
T cd05054         248 FDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEE--FCRRLKEGTR---MRAP---EYATPEIYSIMLDCWHNNPED  319 (337)
T ss_pred             cCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHH--HHHHHhccCC---CCCC---ccCCHHHHHHHHHHccCChhh
Confidence            78888999999999999999998 8777754221110  0000000000   0001   122346789999999999999


Q ss_pred             CCCHHHHHHHHcccCC
Q 002875          854 RPSMEEALKLLSGLKP  869 (872)
Q Consensus       854 Rpt~~~v~~~L~~~~~  869 (872)
                      ||+++|++++|+++-+
T Consensus       320 RPs~~ell~~l~~~~~  335 (337)
T cd05054         320 RPTFSELVEILGDLLQ  335 (337)
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.7e-40  Score=330.38  Aligned_cols=475  Identities=26%  Similarity=0.372  Sum_probs=367.5

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      ..++.|.+++|.+.. ..+.+.++..|++|++++|++. ..|.+++.+..++.|+.++|.++ .+|..++.+.+|+.|+.
T Consensus        45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            578999999999974 4567899999999999999998 57788999999999999999998 78999999999999999


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCccc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS  177 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~  177 (872)
                      ++|.+. .+|++++.+..|+.|+..+|+++ ..|..+..+.++..+++.+|.+....|..+. |..|++||...|-+. .
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence            999998 57888999999999999999996 5788899999999999999988865555554 999999999988776 7


Q ss_pred             CCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCcc-ccCCCCCCEEEcccccCCCCCCccccC
Q 002875          178 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES-FADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       178 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      +|++++.|.+|+-|+|.+|++.. .| +|..+..|++|.++.|.|. .+|.. ..++.++.+|||..|++. ..|++++-
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl  273 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL  273 (565)
T ss_pred             CChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence            89999999999999999999984 45 8999999999999999998 45555 458999999999999998 78999999


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCc---eeEEE-------cCCCc----CCCCC
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV---LFKLI-------LFSNN----FTGSL  322 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~---l~~l~-------l~~n~----~~~~~  322 (872)
                      +.+|+.||+++|.++ .+|..++++ .|+.|-+.+|.+.. +..++-+.+.   +++|.       ++...    -.+..
T Consensus       274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            999999999999998 578889999 89999999998752 1111111110   11110       00000    00010


Q ss_pred             C----CCCCCCCCCcEEEcCCCccccccCccCCCCC--CCcEEEcCCCcCCCCCCchhhhhccccc-ccccCCCCCCCcC
Q 002875          323 S----PSLSNCSSLVRLRLEDNSFSGEIPLKFSQLP--DINYIDLSRNGFTGGIPTDINQASKLEY-FNVSNNPKLGGMI  395 (872)
Q Consensus       323 ~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~ls~n~~l~~~~  395 (872)
                      +    +....+-+.+.|++++-+++......|..-.  -....++++|++. .+|..+..+..+.+ +.+++|.  .+++
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~--isfv  427 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK--ISFV  427 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc--cccc
Confidence            1    1122345678888888888755444444322  2567888888887 56766666655544 4555552  2567


Q ss_pred             CcccCCCcccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCC
Q 002875          396 PAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPV  475 (872)
Q Consensus       396 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  475 (872)
                      |..+..++.|..|++++|.+....-.++.+..|+.++++.|+|. .+|.-+..+..++.+-.++|++....|+.+..|.+
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n  506 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN  506 (565)
T ss_pred             hHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence            77777788888888887766554445667777888888888776 56665555556666666668877777777888888


Q ss_pred             CCEEECCCCccccccCccccCCCCCcEEECcCCeee
Q 002875          476 LGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS  511 (872)
Q Consensus       476 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (872)
                      |.+|||.+|.+. .+|..++++++|++|++++|+|.
T Consensus       507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            888888888887 56778888888888888888886

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2e-35  Score=308.38  Aligned_cols=242  Identities=16%  Similarity=0.087  Sum_probs=190.3

Q ss_pred             cCcchhhhccCCCCCceeeee-cCCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          608 FNSTECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      |.  ....||+|+||.||.|. ..+|..+|+|++++..    .+.+-.+.|-.+|....+|.||+++-.|++.+..||||
T Consensus       143 Fe--~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiM  220 (550)
T KOG0605|consen  143 FE--LLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIM  220 (550)
T ss_pred             ch--hheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEE
Confidence            55  88999999999999997 5789999999998743    34566788889999999999999999999999999999


Q ss_pred             cccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc----
Q 002875          683 DYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL----  756 (872)
Q Consensus       683 ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~----  756 (872)
                      ||.||||+...|.+.  ++......++.+++.|+.-+|..   |+|||||||+|+|||..|++|++|||++.-...    
T Consensus       221 EylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~  297 (550)
T KOG0605|consen  221 EYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRI  297 (550)
T ss_pred             EecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccccchhhhhhhh
Confidence            999999999999874  35556677899999999999999   999999999999999999999999998742100    


Q ss_pred             --------------------cCC-------------------------CCcccccccCchhhhcccCCcccccchhHHHH
Q 002875          757 --------------------ADG-------------------------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEI  791 (872)
Q Consensus       757 --------------------~~~-------------------------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvi  791 (872)
                                          ...                         ....|++-|.+||++.+..|+..+|.||+|||
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~I  377 (550)
T KOG0605|consen  298 ESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCI  377 (550)
T ss_pred             hhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHH
Confidence                                000                         00124556788899999899999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCccccccccccc-cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCC---HHHHHH
Q 002875          792 ILEILTNGRLTNAGSSLQNKPIDGLLGEMY-NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS---MEEALK  862 (872)
Q Consensus       792 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt---~~~v~~  862 (872)
                      +|||+.|-+||.+....+.+.......+.+ .+.       ......++.+++.+|+- ||++|--   ++||-+
T Consensus       378 myEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~-------~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~  444 (550)
T KOG0605|consen  378 MYEMLVGYPPFCSETPQETYRKIVNWRETLKFPE-------EVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKK  444 (550)
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCC-------cCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhc
Confidence            999999999998766544332221111111 111       11222567788888887 9999964   666654

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=4.1e-35  Score=305.93  Aligned_cols=240  Identities=18%  Similarity=0.205  Sum_probs=185.7

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      +.+|+|+||.||+|+. .+|+.||+|.+...  ......+.+|++++++++||||++++++|...+..++||||+++|+|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            4689999999999986 57999999987643  22356788999999999999999999999999999999999999999


Q ss_pred             HHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCc----c
Q 002875          691 SEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFP----A  763 (872)
Q Consensus       691 ~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~----~  763 (872)
                      .+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||++...........    .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  157 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQ  157 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCcccccccccccCCCCC
Confidence            999965   357888899999999999999998   999999999999999999999999999865332111110    1


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      ....|.+||......++.++||||+||++|||++ |..|+.......   .......   ......+   ......+.++
T Consensus       158 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~---~~~~~~~---~~~~~~~---~~~~~~~~~l  228 (252)
T cd05084         158 IPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQ---TREAIEQ---GVRLPCP---ELCPDAVYRL  228 (252)
T ss_pred             CceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHH---HHHHHHc---CCCCCCc---ccCCHHHHHH
Confidence            1123667788777778889999999999999998 655554321100   0000000   0000111   1223467889


Q ss_pred             HHHcccCCCCCCCCHHHHHHHHc
Q 002875          843 ALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      +.+|++.||++|||++|+.+.|+
T Consensus       229 i~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         229 MERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             HHHHcCCChhhCcCHHHHHHHHh
Confidence            99999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3e-35  Score=324.34  Aligned_cols=245  Identities=18%  Similarity=0.133  Sum_probs=187.3

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      |...+.||+|+||.||++.. .+++.||+|...     .+.+.+|++++++++|||||++++++...+..++||||+. +
T Consensus        94 y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-----~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~  167 (391)
T PHA03212         94 FSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-----RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-T  167 (391)
T ss_pred             cEEEEEEcCCCCeEEEEEEECCCCCEEEEechh-----hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-C
Confidence            34888999999999999985 678999999754     2346789999999999999999999999999999999995 6


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCCcc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSFPA  763 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~~~  763 (872)
                      +|.+++..  ..++.+.+.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......   .....
T Consensus       168 ~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~  244 (391)
T PHA03212        168 DLYCYLAAKRNIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWA  244 (391)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCccccccccccccccccc
Confidence            99888865  457888899999999999999999   99999999999999999999999999986432211   11123


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc-----ccc------------------cccccc
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK-----PID------------------GLLGEM  820 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~-----~~~------------------~~~~~~  820 (872)
                      ++..|.+||+.....++.++||||+||++|||+||+.|+.........     ...                  ....+.
T Consensus       245 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  324 (391)
T PHA03212        245 GTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEI  324 (391)
T ss_pred             CccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHH
Confidence            556678889888888899999999999999999999887643321100     000                  000000


Q ss_pred             c----cc--cccCCCCch---HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 Y----NE--NEVGSSSSL---QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ~----~~--~~~~~~~~~---~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +    ..  ......+..   .+...++.+++.+||+.||++|||++|++++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~h  376 (391)
T PHA03212        325 YIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDF  376 (391)
T ss_pred             HHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            0    00  000001111   1234567889999999999999999999854

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.5e-35  Score=323.74  Aligned_cols=249  Identities=20%  Similarity=0.285  Sum_probs=185.3

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC-----CeeEEE
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----HQAYLL  681 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lv  681 (872)
                      ...+.+|+|+||.||+|+. .+|+.||||++....   .....+.+|++++++++|||||++++++...     ...|+|
T Consensus         3 ~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv   82 (338)
T cd07859           3 KIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVV   82 (338)
T ss_pred             EEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEE
Confidence            3678899999999999985 578999999986421   2344678899999999999999999998643     247999


Q ss_pred             EcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          682 YDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||||+ ++|.+++..  ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        83 ~e~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~  158 (338)
T cd07859          83 FELME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARVAFNDTP  158 (338)
T ss_pred             EecCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCccccccccccC
Confidence            99995 699998875  357888899999999999999999   999999999999999999999999999875322111


Q ss_pred             -----CCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------cccc--------
Q 002875          760 -----SFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------PIDG--------  815 (872)
Q Consensus       760 -----~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~~~~--------  815 (872)
                           ....++.+|.+||+...  ..++.++|||||||++|||+||+.||.+.......         +...        
T Consensus       159 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  238 (338)
T cd07859         159 TAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNE  238 (338)
T ss_pred             ccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhh
Confidence                 11224566788888754  56788999999999999999999988654321000         0000        


Q ss_pred             ----cccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          816 ----LLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       816 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                          ....+....+.......+.....+.+++.+||+.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         239 KARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             hHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                000000000000000011123457789999999999999999999865

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.3e-35  Score=326.41  Aligned_cols=243  Identities=13%  Similarity=0.127  Sum_probs=185.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|++++++++|||||++++++.+.+..|+|||||+
T Consensus         5 ~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~   84 (381)
T cd05626           5 KIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP   84 (381)
T ss_pred             EEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCC
Confidence            778899999999999985 678999999997532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC------
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------  758 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~------  758 (872)
                      +|+|.+++...  .++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......      
T Consensus        85 gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~  161 (381)
T cd05626          85 GGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQ  161 (381)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCccccccccccccc
Confidence            99999998653  46677788999999999999998   99999999999999999999999999875321000      


Q ss_pred             -------------------------------------------CCCcccccccCchhhhcccCCcccccchhHHHHHHHH
Q 002875          759 -------------------------------------------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEI  795 (872)
Q Consensus       759 -------------------------------------------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el  795 (872)
                                                                 .....++..|++||......++.++||||+||++|||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~el  241 (381)
T cd05626         162 KGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEM  241 (381)
T ss_pred             ccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHH
Confidence                                                       0011245668888988877889999999999999999


Q ss_pred             HcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH--cccCCCCCCCCHHHHHHH
Q 002875          796 LTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL--CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       796 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--cl~~dp~~Rpt~~~v~~~  863 (872)
                      +||..||..........  .... .......+..   .....++.+++.+  |+..+|.+||+++|++++
T Consensus       242 ltG~~Pf~~~~~~~~~~--~i~~-~~~~~~~~~~---~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         242 LVGQPPFLAPTPTETQL--KVIN-WENTLHIPPQ---VKLSPEAVDLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             HhCCCCCcCCCHHHHHH--HHHc-cccccCCCCC---CCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            99999997543211100  0000 0000001001   1122345566655  677788889999999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=4e-35  Score=316.48  Aligned_cols=246  Identities=17%  Similarity=0.237  Sum_probs=188.3

Q ss_pred             chhhhccCCCCCceeeeec-CCCc----EEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGI----TVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~----~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ...+.+|+|+||.||+|+. .+|+    .||||.++...  ...+.+.+|+.+++.++||||++++|+|... ..++|+|
T Consensus        10 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~v~e   88 (316)
T cd05108          10 KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQ   88 (316)
T ss_pred             eeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Cceeeee
Confidence            3889999999999999985 3444    48999986432  3356788899999999999999999999874 5789999


Q ss_pred             ccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          684 YLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       684 y~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      |+++|+|.++++..   .++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++........
T Consensus        89 ~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~  165 (316)
T cd05108          89 LMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKE  165 (316)
T ss_pred             cCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEccccccccccCCCcc
Confidence            99999999999763   47788899999999999999998   9999999999999999999999999999765432211


Q ss_pred             Cc----ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          761 FP----AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       761 ~~----~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      ..    .....|++||......++.++|||||||++|||+| |..|+.+.....   .......   ....+.++   ..
T Consensus       166 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~---~~~~~~~---~~~~~~~~---~~  236 (316)
T cd05108         166 YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE---ISSILEK---GERLPQPP---IC  236 (316)
T ss_pred             eeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH---HHHHHhC---CCCCCCCC---CC
Confidence            11    11223667788777788899999999999999998 777765322111   0000100   00011111   12


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ..++.+++.+||+.||++||++.+++..+..+..
T Consensus       237 ~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~  270 (316)
T cd05108         237 TIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  270 (316)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHc
Confidence            2457789999999999999999999999876643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=4.7e-35  Score=311.04  Aligned_cols=243  Identities=21%  Similarity=0.237  Sum_probs=187.3

Q ss_pred             hhhhccCCCCCceeeeec-----CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-----PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-----~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|+||.||+|..     .+++.||+|.+....  .....+.+|++++++++||||+++++++..++..|+||||
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   88 (283)
T cd05090           9 FMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEY   88 (283)
T ss_pred             eeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEc
Confidence            678899999999999973     467899999997432  2345788899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC-------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeE
Q 002875          685 LPNGNLSEKIRT-------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL  745 (872)
Q Consensus       685 ~~~g~L~~~l~~-------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki  745 (872)
                      +++|+|.+++..                   ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+|+
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~~~~~~kl  165 (283)
T cd05090          89 LNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGEQLHVKI  165 (283)
T ss_pred             CCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEcCCCcEEe
Confidence            999999999842                   235677788999999999999998   9999999999999999999999


Q ss_pred             ccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccc
Q 002875          746 AEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       746 ~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      +|||+++.......    ........|.+||+..+..++.++|||||||++|||+| |..||.+... ..  ..    +.
T Consensus       166 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~-~~--~~----~~  238 (283)
T cd05090         166 SDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN-QE--VI----EM  238 (283)
T ss_pred             ccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH-HH--HH----HH
Confidence            99999865422111    11112233677888777778899999999999999999 7667654321 10  00    11


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      ......  .+........+.+++.+||+.||++||+++++.++|.+
T Consensus       239 ~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         239 VRKRQL--LPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHcCCc--CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            111000  00011123457788999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=2.5e-35  Score=319.12  Aligned_cols=244  Identities=15%  Similarity=0.131  Sum_probs=184.3

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|.. .+|+.||+|+++...    ...+.+.+|+.++.++ +|||||++++++.+.+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            3689999999999985 568899999997532    2344567788887766 799999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++..  ..++.....++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~  157 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFC  157 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCcccccc
Confidence            999998865  457788889999999999999999   99999999999999999999999999986432111  11222


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC--ccccccccccccccccCCCCchHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN--KPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ++..|.+||+..+..++.++|||||||++|||+||+.||........  ........+.........+.   ....++.+
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~---~~~~~~~~  234 (329)
T cd05618         158 GTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR---SLSVKAAS  234 (329)
T ss_pred             CCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCC---CCCHHHHH
Confidence            45567888988888888999999999999999999999863211110  00000000111111011111   22345778


Q ss_pred             HHHHcccCCCCCCCC------HHHHHHH
Q 002875          842 VALLCTRSTPSDRPS------MEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt------~~~v~~~  863 (872)
                      ++.+||+.||++||+      ++|++++
T Consensus       235 ll~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05618         235 VLKSFLNKDPKERLGCHPQTGFADIQGH  262 (329)
T ss_pred             HHHHHhcCCHHHcCCCCCCCCHHHHhcC
Confidence            999999999999998      5677654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=2.3e-35  Score=324.21  Aligned_cols=243  Identities=14%  Similarity=0.066  Sum_probs=188.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||++.. .+|+.||||++....    ...+.+.+|+.+++.++||||+++++++.+++..|+|||||+
T Consensus        47 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~  126 (370)
T cd05596          47 VIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMP  126 (370)
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCC
Confidence            788999999999999986 578999999997422    234557789999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC-CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---CCc
Q 002875          687 NGNLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---SFP  762 (872)
Q Consensus       687 ~g~L~~~l~~~-~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~~~  762 (872)
                      +|+|.+++... .+......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++........   ...
T Consensus       127 gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~  203 (370)
T cd05596         127 GGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTA  203 (370)
T ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCC
Confidence            99999998763 46677778899999999999998   999999999999999999999999999865432211   122


Q ss_pred             ccccccCchhhhccc----CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          763 AKIAWTESGEFYNAM----KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~----~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      .++..|++||+....    .++.++||||+||++|||+||+.||.......      ....+.........+.......+
T Consensus       204 ~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~s~~  277 (370)
T cd05596         204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG------TYSKIMDHKNSLTFPDDIEISKQ  277 (370)
T ss_pred             CCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHH------HHHHHHcCCCcCCCCCcCCCCHH
Confidence            355667788876532    36788999999999999999999987543211      11111111000001111122356


Q ss_pred             HHHHHHHcccCCCCC--CCCHHHHHHH
Q 002875          839 VLDVALLCTRSTPSD--RPSMEEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~--Rpt~~~v~~~  863 (872)
                      +.+++.+|++.+|++  |||++|++++
T Consensus       278 ~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         278 AKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             HHHHHHHHccChhhccCCCCHHHHhcC
Confidence            778899999999988  9999999865

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-35  Score=314.74  Aligned_cols=243  Identities=17%  Similarity=0.139  Sum_probs=202.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+++. .+|+.+|+|.+.+...    ..+.+.+|+.+|+++. |||||.++++|++...+++|||+|
T Consensus        39 l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~  118 (382)
T KOG0032|consen   39 LGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELC  118 (382)
T ss_pred             ehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEec
Confidence            779999999999999996 4599999999976433    3468899999999999 999999999999999999999999


Q ss_pred             CCCChHHHhhCC-CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC----CCeeEcccccccccccc-CC
Q 002875          686 PNGNLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN----MEPHLAEFGFKYLTQLA-DG  759 (872)
Q Consensus       686 ~~g~L~~~l~~~-~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~----~~~ki~dfg~~~~~~~~-~~  759 (872)
                      .||+|.+.+... .+......++.|++.|++|||+.   +|+|||+||+|+|+...    +.+|++|||++...... ..
T Consensus       119 ~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~  195 (382)
T KOG0032|consen  119 EGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERL  195 (382)
T ss_pred             CCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceE
Confidence            999999999887 77778889999999999999998   99999999999999633    47999999999876542 22


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ....++++|.+||+.....++..+||||.||++|.|++|.+||++........      .+.........+.++.....+
T Consensus       196 ~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~------~i~~~~~~f~~~~w~~is~~a  269 (382)
T KOG0032|consen  196 HTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL------AILRGDFDFTSEPWDDISESA  269 (382)
T ss_pred             eeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH------HHHcCCCCCCCCCccccCHHH
Confidence            33457888999999998899999999999999999999999998665322111      111111112233445556678


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++..|+..||.+|+|+.+++++
T Consensus       270 kd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  270 KDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             HHHHHHhcccCcccCCCHHHHhcC
Confidence            889999999999999999999987

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=1.4e-35  Score=321.13  Aligned_cols=237  Identities=13%  Similarity=0.071  Sum_probs=186.3

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      +.+|+|+||.||++.. .+|+.||||.++...    .....+.+|++++++++||||+++++++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999985 679999999997532    23455677899999999999999999999999999999999999


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      +|.+++..  ..++.+...++.|++.||+|||+ .   +|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~  157 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFC  157 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCccccccc
Confidence            99998865  35788889999999999999997 6   999999999999999999999999999864321111  1122


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|.+||+..+..++.++|||||||++|||+||+.||.......      ....+.... ...+.   ....++.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~~~~~~~li  227 (325)
T cd05594         158 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK------LFELILMEE-IRFPR---TLSPEAKSLL  227 (325)
T ss_pred             CCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHH------HHHHHhcCC-CCCCC---CCCHHHHHHH
Confidence            4556788898888888999999999999999999999987543211      000110000 11111   1234577889


Q ss_pred             HHcccCCCCCCC-----CHHHHHHH
Q 002875          844 LLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      .+|++.||++|+     ++++++++
T Consensus       228 ~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         228 SGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             HHHhhcCHHHhCCCCCCCHHHHhcC
Confidence            999999999996     89998865

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=6.9e-35  Score=306.84  Aligned_cols=244  Identities=20%  Similarity=0.290  Sum_probs=191.4

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|...    +...||||.++...  .....+.+|+..+++++||||+++++++.+.+..++||||+
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   87 (266)
T cd05033           8 IEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYM   87 (266)
T ss_pred             eeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcC
Confidence            7889999999999999863    34589999987543  23556888999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-  761 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-  761 (872)
                      ++|+|.+++..   ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.+|++|||+++......... 
T Consensus        88 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~  164 (266)
T cd05033          88 ENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYT  164 (266)
T ss_pred             CCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhccccccccee
Confidence            99999999865   458889999999999999999998   99999999999999999999999999987653211111 


Q ss_pred             ---cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          762 ---PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       762 ---~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                         ......|.+||...+..++.++|||||||++|||+| |..|+.......   ..........   .+.+   .....
T Consensus       165 ~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~---~~~~~~~~~~---~~~~---~~~~~  235 (266)
T cd05033         165 TKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQD---VIKAVEDGYR---LPPP---MDCPS  235 (266)
T ss_pred             ccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHH---HHHHHHcCCC---CCCC---CCCCH
Confidence               112234677888877778889999999999999998 777775332111   0011111000   1111   12234


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+.+++.+||+.+|++||+++|++++|+++
T Consensus       236 ~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         236 ALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            677999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-35  Score=325.72  Aligned_cols=246  Identities=19%  Similarity=0.222  Sum_probs=193.5

Q ss_pred             cchhhhccCCCCCceeeeecCCC-cEEEEEEeec-cchhHHHHHHHHHHhhccC-CCCceeEEEE-Eec------CCeeE
Q 002875          610 STECEEAARPQSAAGCKAVLPTG-ITVSVKKIEW-GATRIKIVSEFITRIGTVR-HKNLIRLLGF-CYN------RHQAY  679 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~g-~~vavK~~~~-~~~~~~~~~~e~~~l~~l~-H~niv~l~~~-~~~------~~~~~  679 (872)
                      ..+.+.|.+|+|+.||.|....+ ..||+|++-. +....+...+||++|+.++ |||||.+++. ...      .-+++
T Consensus        39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Evl  118 (738)
T KOG1989|consen   39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVL  118 (738)
T ss_pred             EEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEE
Confidence            34778899999999999997665 9999999853 4556788999999999998 9999999993 321      13688


Q ss_pred             EEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      |.||||++|.|-|++..    ++...+.++|+.|+++|+++||.. .|+|||||||.+||||+.++..|+||||-+...-
T Consensus       119 lLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~  197 (738)
T KOG1989|consen  119 LLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATTKI  197 (738)
T ss_pred             eehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccccccccc
Confidence            99999999999999864    457889999999999999999985 7889999999999999999999999999875321


Q ss_pred             ccCCC-----------CcccccccCchhhh---cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccc
Q 002875          756 LADGS-----------FPAKIAWTESGEFY---NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMY  821 (872)
Q Consensus       756 ~~~~~-----------~~~~~~~~~~~e~~---~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~  821 (872)
                      .....           ...+++-|.+||.+   .+..++.|+|||++||++|-|+....||++.....      .+..-|
T Consensus       198 ~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~la------Ilng~Y  271 (738)
T KOG1989|consen  198 LSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLA------ILNGNY  271 (738)
T ss_pred             CCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCccee------EEeccc
Confidence            11100           11234557777754   56789999999999999999999999998653211      111111


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          822 NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .   .+   ..+.....+.+++..||+.||.+||++-||+..+.+|.
T Consensus       272 ~---~P---~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~  312 (738)
T KOG1989|consen  272 S---FP---PFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELA  312 (738)
T ss_pred             c---CC---CCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHh
Confidence            1   11   11334567888999999999999999999999887764

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=7.5e-35  Score=312.50  Aligned_cols=248  Identities=19%  Similarity=0.236  Sum_probs=184.9

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||+|... +|+.||||++.....  ....+.+|+.++++++|||||++++++.+++..++||||++ |
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~   87 (303)
T cd07869           9 KLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVH-T   87 (303)
T ss_pred             EeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCC-c
Confidence            7889999999999999964 789999999875322  23456789999999999999999999999999999999996 6


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      +|.+++..   ..+......++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.......  ....
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  164 (303)
T cd07869          88 DLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEV  164 (303)
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCc
Confidence            88887754   356778889999999999999999   999999999999999999999999999864322211  1122


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc----------------cccccccccccccc
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP----------------IDGLLGEMYNENEV  826 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~----------------~~~~~~~~~~~~~~  826 (872)
                      +..+|.+||...+ ..++.++||||+||++|||+||..||.+........                ..............
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (303)
T cd07869         165 VTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFT  244 (303)
T ss_pred             ccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhcccccccccc
Confidence            4456778887654 457888999999999999999999987532211000                00000000000000


Q ss_pred             -CCCCchHH------HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 -GSSSSLQD------EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 -~~~~~~~~------~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ..+....+      ....+.+++.+|++.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h  288 (303)
T cd07869         245 LYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSH  288 (303)
T ss_pred             ccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcC
Confidence             00000111      12456789999999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=8.8e-35  Score=306.28  Aligned_cols=248  Identities=14%  Similarity=0.159  Sum_probs=195.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||.+...    ......+.+|+.++++++||||+++++++.+++..++||||++
T Consensus         6 ~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~   85 (267)
T cd08229           6 IEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELAD   85 (267)
T ss_pred             hhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecC
Confidence            778999999999999995 68999999988642    2234577889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          687 NGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       687 ~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      +|+|.+++..      ..++.+.+.++.|+++|++|||+.   +++|+||||+||+++.++.++++|||++.........
T Consensus        86 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~  162 (267)
T cd08229          86 AGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA  162 (267)
T ss_pred             CCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcc
Confidence            9999998862      347888899999999999999998   9999999999999999999999999998654322211


Q ss_pred             --CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          761 --FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       761 --~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                        ...+...+.+||......++.++|||||||++|||+||..||........ ...........   .+..  .......
T Consensus       163 ~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~~~~~---~~~~--~~~~~~~  236 (267)
T cd08229         163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY-SLCKKIEQCDY---PPLP--SDHYSEE  236 (267)
T ss_pred             cccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHH-HHhhhhhcCCC---CCCC--cccccHH
Confidence              12244457788888777788899999999999999999999864321110 00011111100   0001  1123456


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.||.+||||++|++.++++.
T Consensus       237 ~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         237 LRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             HHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            778999999999999999999999998775

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.2e-34  Score=305.25  Aligned_cols=249  Identities=16%  Similarity=0.175  Sum_probs=195.7

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|... +|+.||+|.++..    ....+.+.+|++++++++|+||+++++++.+.+..++||||++
T Consensus         6 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   85 (267)
T cd08224           6 IEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELAD   85 (267)
T ss_pred             eeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCC
Confidence            7788999999999999975 8999999988642    2235678899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          687 NGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       687 ~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      +|+|.+++..      ..++.+...++.|+++|++|||+.   +|+||||||+||+++.++.++++|||++........ 
T Consensus        86 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~  162 (267)
T cd08224          86 AGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA  162 (267)
T ss_pred             CCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceeeeccCCCcc
Confidence            9999998853      246788899999999999999998   999999999999999999999999999865432211 


Q ss_pred             -CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          760 -SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       ....+...|.+||...+..++.++|||||||++|||+||+.|+........    ............+.+  .......
T Consensus       163 ~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~  236 (267)
T cd08224         163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY----SLCKKIEKCDYPPLP--ADHYSEE  236 (267)
T ss_pred             cceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHH----HHHhhhhcCCCCCCC--hhhcCHH
Confidence             111234456788887777788899999999999999999999864331100    000011000000001  1123346


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      +.+++.+||..+|++|||+.++++.|+.+++
T Consensus       237 ~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~~  267 (267)
T cd08224         237 LRDLVSRCINPDPEKRPDISYVLQVAKEMHA  267 (267)
T ss_pred             HHHHHHHHcCCCcccCCCHHHHHHHHHHhcC
Confidence            7789999999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=3.1e-35  Score=316.54  Aligned_cols=235  Identities=18%  Similarity=0.178  Sum_probs=181.8

Q ss_pred             hccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhc-cCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          615 EAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      .+|+|+||.||+|.. .+|+.||||.++...    ...+....|..++.. .+||||+++++++.+.+..|+||||+++|
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g   81 (316)
T cd05619           2 MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGG   81 (316)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCC
Confidence            689999999999986 568899999997532    223445556677765 58999999999999999999999999999


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCccc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPAK  764 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~~  764 (872)
                      +|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....+
T Consensus        82 ~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  158 (316)
T cd05619          82 DLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCG  158 (316)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecC
Confidence            99999975  457888899999999999999998   99999999999999999999999999986432111  111224


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||+..+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+++.
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~li~  228 (316)
T cd05619         159 TPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEE------LFQSIRMDN-PCYPR---WLTREAKDILV  228 (316)
T ss_pred             CccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCC-CCCCc---cCCHHHHHHHH
Confidence            556788898888788999999999999999999999987433111      011110000 00011   12245678899


Q ss_pred             HcccCCCCCCCCHH-HHHH
Q 002875          845 LCTRSTPSDRPSME-EALK  862 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~-~v~~  862 (872)
                      +||+.||++||++. ++.+
T Consensus       229 ~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         229 KLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             HHhccCHhhcCCChHHHHc
Confidence            99999999999997 5543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2.8e-35  Score=317.02  Aligned_cols=235  Identities=17%  Similarity=0.167  Sum_probs=181.8

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhc-cCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|.. .+|+.||||.++...    ...+....|..++.. .+||||+++++++.+.+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            3689999999999986 578999999997532    223445566777764 5899999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFC  157 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccC
Confidence            999999865  357788889999999999999999   99999999999999999999999999986432111  11222


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|.+||+..+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~------~~~~~~~~~-~~~~~---~~~~~~~~li  227 (316)
T cd05620         158 GTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDE------LFESIRVDT-PHYPR---WITKESKDIL  227 (316)
T ss_pred             CCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCC-CCCCC---CCCHHHHHHH
Confidence            4556788899888888999999999999999999999987543211      011111111 00011   1234577899


Q ss_pred             HHcccCCCCCCCCHH-HHH
Q 002875          844 LLCTRSTPSDRPSME-EAL  861 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~-~v~  861 (872)
                      .+||+.||++||++. ++.
T Consensus       228 ~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         228 EKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             HHHccCCHHHcCCChHHHH
Confidence            999999999999985 555

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-35  Score=299.00  Aligned_cols=253  Identities=18%  Similarity=0.278  Sum_probs=185.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHh--hccCCCCceeEEEEEecCC----eeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRI--GTVRHKNLIRLLGFCYNRH----QAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l--~~l~H~niv~l~~~~~~~~----~~~lv~ey~  685 (872)
                      ..+.+|+|.||.||||.+. ++.||||++...  +.+.|..|-++.  -.++|+||++++++-....    +++||+||.
T Consensus       214 l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~--~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh  290 (534)
T KOG3653|consen  214 LLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ--EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFH  290 (534)
T ss_pred             hHHHhhcCccceeehhhcc-CceeEEEecCHH--HHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeec
Confidence            6788999999999999994 599999999743  445566655554  4689999999999987654    899999999


Q ss_pred             CCCChHHHhhCC-CCHHHHHHHHHHHHHHHHHHhhC------CCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          686 PNGNLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHD------CYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       686 ~~g~L~~~l~~~-~~~~~~~~i~~~i~~gl~~lH~~------~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ++|+|.++|... .+|.+-.+|+..+++||+|||..      +.|+|+|||||++|||+..|+++.|+|||+|.......
T Consensus       291 ~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~  370 (534)
T KOG3653|consen  291 PKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGK  370 (534)
T ss_pred             cCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCC
Confidence            999999999875 59999999999999999999964      45899999999999999999999999999997654321


Q ss_pred             ----CCCcccccccCchhhhccc-CCc-----ccccchhHHHHHHHHHcCCCCCCCCCCC-CCcccc---------cccc
Q 002875          759 ----GSFPAKIAWTESGEFYNAM-KEE-----MYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPID---------GLLG  818 (872)
Q Consensus       759 ----~~~~~~~~~~~~~e~~~~~-~~~-----~~~Dv~S~Gvil~el~tg~~p~~~~~~~-~~~~~~---------~~~~  818 (872)
                          .....++..|++||+.++. ...     .++||||+|.|+|||+++...++.+... ...++.         +.+.
T Consensus       371 ~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq  450 (534)
T KOG3653|consen  371 PQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQ  450 (534)
T ss_pred             CCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHH
Confidence                1223467778888887653 222     2369999999999999987655422111 111111         1111


Q ss_pred             ccc-ccccc-CCCCch--HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          819 EMY-NENEV-GSSSSL--QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       819 ~~~-~~~~~-~~~~~~--~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +.+ ..+.. ..++.+  ...+.-+.+.+..||..||+.|-|+.=|-+++..+
T Consensus       451 ~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l  503 (534)
T KOG3653|consen  451 ELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAEL  503 (534)
T ss_pred             HHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHH
Confidence            111 11111 111222  13355677888999999999999987776666543

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=2.9e-35  Score=317.53  Aligned_cols=237  Identities=18%  Similarity=0.173  Sum_probs=184.1

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|.. .+|+.||||+++...    ...+.+..|+.++... +||||+++++++.+.+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999986 568899999997532    2344566777887765 699999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++..  ..+......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~  157 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFC  157 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccc
Confidence            999999865  457788889999999999999998   99999999999999999999999999986432111  11223


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|.+||......++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~li  227 (320)
T cd05590         158 GTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDD------LFEAILNDE-VVYPT---WLSQDAVDIL  227 (320)
T ss_pred             cCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH------HHHHHhcCC-CCCCC---CCCHHHHHHH
Confidence            4556788898888888899999999999999999999987543211      111111111 11111   1234577899


Q ss_pred             HHcccCCCCCCCCH------HHHHHH
Q 002875          844 LLCTRSTPSDRPSM------EEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~------~~v~~~  863 (872)
                      .+|++.||++||++      ++++++
T Consensus       228 ~~~L~~dP~~R~~~~~~~~~~~~~~h  253 (320)
T cd05590         228 KAFMTKNPTMRLGSLTLGGEEAILRH  253 (320)
T ss_pred             HHHcccCHHHCCCCCCCCCHHHHHcC
Confidence            99999999999998      666543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=6.6e-35  Score=316.06  Aligned_cols=243  Identities=15%  Similarity=0.125  Sum_probs=184.9

Q ss_pred             hccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          615 EAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      .||+|+||.||+|.. .+|+.||||.++...    ...+.+.+|+.++.++ +|||||++++++.+.+..|+|||||++|
T Consensus         2 ~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g   81 (329)
T cd05588           2 VIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGG   81 (329)
T ss_pred             eEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            689999999999986 578999999997532    2245577888998888 6999999999999999999999999999


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCccc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPAK  764 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~~  764 (872)
                      +|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....+
T Consensus        82 ~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g  158 (329)
T cd05588          82 DLMFHMQRQRKLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCG  158 (329)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccC
Confidence            99998864  457888899999999999999999   99999999999999999999999999986421111  111224


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC--CccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ--NKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      +..|.+||+..+..++.++||||+||++|||+||+.||.......  .........+.........+.   ....++.++
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~l  235 (329)
T cd05588         159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPR---SLSVKASSV  235 (329)
T ss_pred             CccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCC---CCCHHHHHH
Confidence            556778898888888899999999999999999999986321111  000000000111111011111   123457789


Q ss_pred             HHHcccCCCCCCCC------HHHHHHH
Q 002875          843 ALLCTRSTPSDRPS------MEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt------~~~v~~~  863 (872)
                      +.+|++.||++||+      ++|++++
T Consensus       236 i~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05588         236 LKGFLNKDPKERLGCHPQTGFRDIKSH  262 (329)
T ss_pred             HHHHhccCHHHcCCCCCCCCHHHHhcC
Confidence            99999999999997      6777654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=3.6e-35  Score=317.29  Aligned_cols=237  Identities=16%  Similarity=0.158  Sum_probs=184.6

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|+. .+|+.||||+++...    ...+.+..|+++++.+ +||||+++++++.+++..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            3689999999999986 568899999997532    2344566778888765 799999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~  157 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFC  157 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccCCccccccc
Confidence            999998865  347788889999999999999999   99999999999999999999999999986432211  11122


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|.+||......++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~~~~~~~ll  227 (321)
T cd05591         158 GTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDD------LFESILHDD-VLYPV---WLSKEAVSIL  227 (321)
T ss_pred             cCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHHHHH
Confidence            4556788898888888999999999999999999999987443211      111111111 00011   1224577889


Q ss_pred             HHcccCCCCCCC-------CHHHHHHH
Q 002875          844 LLCTRSTPSDRP-------SMEEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rp-------t~~~v~~~  863 (872)
                      .+|++.||++||       ++++++++
T Consensus       228 ~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         228 KAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             HHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence            999999999999       78888755

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=6.6e-35  Score=311.08  Aligned_cols=246  Identities=19%  Similarity=0.230  Sum_probs=192.9

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ....+|+|+||.||+|..      .++..||+|.++.... ..+.+.+|++.+++++||||+++++++...+..++||||
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   88 (291)
T cd05094           9 LKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEY   88 (291)
T ss_pred             EeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEec
Confidence            668899999999999973      3566799999875433 346788999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEc
Q 002875          685 LPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA  746 (872)
Q Consensus       685 ~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~  746 (872)
                      +++|+|.+++...                  .++.++..++.|++.|++|||+.   +|+||||||+||++++++.+||+
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~  165 (291)
T cd05094          89 MKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIG  165 (291)
T ss_pred             CCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEEEC
Confidence            9999999998642                  47888999999999999999999   99999999999999999999999


Q ss_pred             cccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccc
Q 002875          747 EFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMY  821 (872)
Q Consensus       747 dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  821 (872)
                      |||++........    ....+...|.+||...+..++.++|||||||++|||+| |..|+.......  .    ...+.
T Consensus       166 dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~--~----~~~~~  239 (291)
T cd05094         166 DFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTE--V----IECIT  239 (291)
T ss_pred             CCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--H----HHHHh
Confidence            9999865322111    11112345778888887788889999999999999999 777765432211  0    00011


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          822 NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ........   ......+.+++.+||+.||++|||++++++.|+.+..
T Consensus       240 ~~~~~~~~---~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         240 QGRVLERP---RVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             CCCCCCCC---ccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence            11100001   1123467899999999999999999999999987743

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=7e-35  Score=305.94  Aligned_cols=244  Identities=18%  Similarity=0.236  Sum_probs=193.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.+|.|+||.||+|...+++.||+|.+..... ....+.+|+.++++++||||+++++++.+.+..++||||+++|+|
T Consensus        10 ~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   89 (261)
T cd05148          10 LERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSL   89 (261)
T ss_pred             HhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCH
Confidence            7899999999999999988899999999976544 456788899999999999999999999999999999999999999


Q ss_pred             HHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC--ccc
Q 002875          691 SEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF--PAK  764 (872)
Q Consensus       691 ~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~--~~~  764 (872)
                      .++++.    ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++..........  ...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~  166 (261)
T cd05148          90 LAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKI  166 (261)
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCC
Confidence            999975    347888899999999999999998   99999999999999999999999999986543221111  112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...+.+||......++.++|||||||++|||+| |+.|+.......      ....+........+   ......+.+++
T Consensus       167 ~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~i  237 (261)
T cd05148         167 PYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHE------VYDQITAGYRMPCP---AKCPQEIYKIM  237 (261)
T ss_pred             ceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHH------HHHHHHhCCcCCCC---CCCCHHHHHHH
Confidence            223667787777778889999999999999999 666665332110      01111111001111   12234677899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHccc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+||+.||++|||++++.+.|+.+
T Consensus       238 ~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         238 LECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             HHHcCCCchhCcCHHHHHHHHhcC
Confidence            999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.2e-34  Score=307.66  Aligned_cols=243  Identities=17%  Similarity=0.217  Sum_probs=190.5

Q ss_pred             hhhhccCCCCCceeeeecC------CCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.+|+|+||.||+|...      +++.||||.++....  ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus         9 ~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   88 (280)
T cd05049           9 LKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFE   88 (280)
T ss_pred             HHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEe
Confidence            7889999999999999863      357899999875433  35678999999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC----------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          684 YLPNGNLSEKIRTK----------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       684 y~~~g~L~~~l~~~----------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      |+++|+|.++++..                .++.+...++.|++.|++|+|+.   +++||||||+||+++.++.+|++|
T Consensus        89 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~kl~d  165 (280)
T cd05049          89 YMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYDLVVKIGD  165 (280)
T ss_pred             cCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCCCeEEECC
Confidence            99999999999642                35677889999999999999999   999999999999999999999999


Q ss_pred             ccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccc
Q 002875          748 FGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYN  822 (872)
Q Consensus       748 fg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  822 (872)
                      ||+++.......    ........|.+||......++.++||||+||++|||+| |..||........      ...+..
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~------~~~~~~  239 (280)
T cd05049         166 FGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEV------IECITQ  239 (280)
T ss_pred             cccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHH------HHHHHc
Confidence            999864322111    11112234678888887788999999999999999999 8888764332110      000111


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .......   ......+.+++.+||+.||++||+++|+++.|++
T Consensus       240 ~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         240 GRLLQRP---RTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             CCcCCCC---CCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            1100001   1223467899999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=6.4e-35  Score=309.13  Aligned_cols=246  Identities=17%  Similarity=0.147  Sum_probs=190.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||.+....  ...+.+.+|++++++++||||++++++|..++..++||||+++|
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   84 (279)
T cd06619           5 YQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGG   84 (279)
T ss_pred             heeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCC
Confidence            678899999999999985 678999999986542  23567888999999999999999999999999999999999999


Q ss_pred             ChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccccc
Q 002875          689 NLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWT  768 (872)
Q Consensus       689 ~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~  768 (872)
                      +|..+.  ..++.....++.|++.|++|||+.   +|+|+||||+||+++.++.+||+|||++............+...|
T Consensus        85 ~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y  159 (279)
T cd06619          85 SLDVYR--KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAY  159 (279)
T ss_pred             ChHHhh--cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhh
Confidence            997653  457778889999999999999999   999999999999999999999999999875433222222344557


Q ss_pred             CchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-ccccccccccccCCCCchHHHHHHHHHHHHHcc
Q 002875          769 ESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCT  847 (872)
Q Consensus       769 ~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  847 (872)
                      .+||......++.++|||||||++|||+||+.||............ .......++......  ......++.+++.+|+
T Consensus       160 ~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l  237 (279)
T cd06619         160 MAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLP--VGQFSEKFVHFITQCM  237 (279)
T ss_pred             cCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCC--CCcCCHHHHHHHHHHh
Confidence            7888887777889999999999999999999998643221111100 111111111101000  0112345788999999


Q ss_pred             cCCCCCCCCHHHHHHHH
Q 002875          848 RSTPSDRPSMEEALKLL  864 (872)
Q Consensus       848 ~~dp~~Rpt~~~v~~~L  864 (872)
                      +.||++||+++|++++-
T Consensus       238 ~~~P~~Rp~~~eil~~~  254 (279)
T cd06619         238 RKQPKERPAPENLMDHP  254 (279)
T ss_pred             hCChhhCCCHHHHhcCc
Confidence            99999999999998764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.1e-35  Score=322.90  Aligned_cols=242  Identities=15%  Similarity=0.094  Sum_probs=188.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||++.. .+|+.||||+++....    ..+.+.+|+.+++.++||||+++++++.+.+..|+||||++
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   84 (330)
T cd05601           5 VKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQP   84 (330)
T ss_pred             EEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCC
Confidence            778999999999999985 5789999999975432    35567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---C
Q 002875          687 NGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---S  760 (872)
Q Consensus       687 ~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~  760 (872)
                      +|+|.+++...   .++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++........   .
T Consensus        85 ~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~  161 (330)
T cd05601          85 GGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSK  161 (330)
T ss_pred             CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeECCCCCceeee
Confidence            99999999753   57788888999999999999999   999999999999999999999999999875432221   1


Q ss_pred             CcccccccCchhhhc------ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          761 FPAKIAWTESGEFYN------AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~------~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      ...++..|.+||+..      ...++.++|||||||++|||+||+.||........      ...+.........+....
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~------~~~i~~~~~~~~~~~~~~  235 (330)
T cd05601         162 LPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKT------YNNIMNFQRFLKFPEDPK  235 (330)
T ss_pred             cccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHH------HHHHHcCCCccCCCCCCC
Confidence            123455677888775      34567889999999999999999999875432111      001100000000011111


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.+++..|+. +|++|||+++++++
T Consensus       236 ~~~~~~~li~~ll~-~p~~R~t~~~l~~h  263 (330)
T cd05601         236 VSSDFLDLIQSLLC-GQKERLGYEGLCCH  263 (330)
T ss_pred             CCHHHHHHHHHHcc-ChhhCCCHHHHhCC
Confidence            23456788888997 99999999999864

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=6.8e-35  Score=311.10  Aligned_cols=248  Identities=20%  Similarity=0.262  Sum_probs=181.2

Q ss_pred             hhhhccCCCCCceeeeec--CCCcEEEEEEeeccch---hHHHHHHHHHHhhcc---CCCCceeEEEEEec-----CCee
Q 002875          612 ECEEAARPQSAAGCKAVL--PTGITVSVKKIEWGAT---RIKIVSEFITRIGTV---RHKNLIRLLGFCYN-----RHQA  678 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l---~H~niv~l~~~~~~-----~~~~  678 (872)
                      ..+.||+|+||.||+|..  .+|+.||||.++....   ....+.+|+.+++++   +||||++++++|..     ....
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~   84 (290)
T cd07862           5 CVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKL   84 (290)
T ss_pred             eeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcE
Confidence            778899999999999985  3578899999865321   233455666666554   79999999999862     3568


Q ss_pred             EEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ++||||++ |+|.+++..    ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        85 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  160 (290)
T cd07862          85 TLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIY  160 (290)
T ss_pred             EEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEccccceEec
Confidence            99999997 699998864    257888899999999999999999   9999999999999999999999999998754


Q ss_pred             cccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccc-ccc
Q 002875          755 QLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPID-GLL  817 (872)
Q Consensus       755 ~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~-~~~  817 (872)
                      ..... ....+..+|++||......++.++|||||||++|||+||+.||.+......               ++.. ...
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  240 (290)
T cd07862         161 SFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALP  240 (290)
T ss_pred             cCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhccc
Confidence            33221 122245567888888777888899999999999999999988875432110               0000 000


Q ss_pred             cccccccccCCC-CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          818 GEMYNENEVGSS-SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       818 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.......... ...++....+.+++.+|++.||++|||+.|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~h  287 (290)
T cd07862         241 RQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  287 (290)
T ss_pred             chhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhcC
Confidence            000000000000 0001223456789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1e-34  Score=308.79  Aligned_cols=252  Identities=19%  Similarity=0.309  Sum_probs=189.6

Q ss_pred             hhhhccCCCCCceeeeec-----CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-----PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-----~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~e  683 (872)
                      ..+.+|+|+||.||+|..     .+|+.||||++.... ...+.+.+|++++++++|||||++++++...  ...++|||
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   87 (284)
T cd05081           8 FIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVME   87 (284)
T ss_pred             eeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEE
Confidence            778999999999999873     468899999987543 3356788999999999999999999988643  46899999


Q ss_pred             ccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          684 YLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       684 y~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      |+++|+|.+++..   ..++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++........
T Consensus        88 ~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~  164 (284)
T cd05081          88 YLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEY  164 (284)
T ss_pred             ecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCcccccccCCCcc
Confidence            9999999999864   357889999999999999999999   9999999999999999999999999998754322211


Q ss_pred             C----cc-cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccc---------ccccccccccc
Q 002875          761 F----PA-KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDG---------LLGEMYNENEV  826 (872)
Q Consensus       761 ~----~~-~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~---------~~~~~~~~~~~  826 (872)
                      .    .. ....|.+||......++.++|||||||++|||+||..++.............         .+.+.......
T Consensus       165 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (284)
T cd05081         165 YKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGR  244 (284)
T ss_pred             eeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCc
Confidence            1    11 1223567788777778889999999999999999877654221100000000         00000110000


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                        .+.......++.+++.+||+.+|++||||+|+++.|+.++
T Consensus       245 --~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~~  284 (284)
T cd05081         245 --LPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAIR  284 (284)
T ss_pred             --CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhcC
Confidence              0011122346889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=3.5e-35  Score=333.11  Aligned_cols=241  Identities=15%  Similarity=0.134  Sum_probs=189.1

Q ss_pred             cchhhhccCCCCCceeeeecC-C-CcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          610 STECEEAARPQSAAGCKAVLP-T-GITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~-~-g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      |...+.+|+|+||.||+|... + ++.||+|.+.... .....+.+|+.++++++|||||+++++|.+++..|+||||++
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~  148 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGS  148 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCC
Confidence            447889999999999999753 3 6789999875433 334567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--
Q 002875          687 NGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       687 ~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--  758 (872)
                      +|+|.++++.      ..++.+...++.|++.||+|+|+.   +|+||||||+||+++.++.+||+|||+++......  
T Consensus       149 gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~  225 (478)
T PTZ00267        149 GGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSL  225 (478)
T ss_pred             CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceecCCcccc
Confidence            9999988753      246677788999999999999998   99999999999999999999999999987643321  


Q ss_pred             --CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          759 --GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       759 --~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                        .....++..|.+||+.....++.++|||||||++|||+||+.||......      ..+.........+.+   ....
T Consensus       226 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~------~~~~~~~~~~~~~~~---~~~s  296 (478)
T PTZ00267        226 DVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQR------EIMQQVLYGKYDPFP---CPVS  296 (478)
T ss_pred             ccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHhCCCCCCC---ccCC
Confidence              11222556688889888888899999999999999999999998643211      011111111101001   1123


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      ..+.+++.+||+.||++||+++++++
T Consensus       297 ~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        297 SGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             HHHHHHHHHHhccChhhCcCHHHHHh
Confidence            46788999999999999999999875

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=4.4e-35  Score=317.05  Aligned_cols=239  Identities=18%  Similarity=0.166  Sum_probs=185.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHH---hhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~---l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++...    ...+.+.+|+++   +++++||||+++++++.+.+..|+|||
T Consensus         3 i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E   82 (324)
T cd05589           3 CLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVME   82 (324)
T ss_pred             EEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEc
Confidence            577899999999999985 579999999997532    223445556554   457789999999999999999999999


Q ss_pred             ccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CC
Q 002875          684 YLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GS  760 (872)
Q Consensus       684 y~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~  760 (872)
                      |+++|+|..+++. ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  ..
T Consensus        83 ~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~  159 (324)
T cd05589          83 YAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTS  159 (324)
T ss_pred             CCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCccc
Confidence            9999999998875 468889999999999999999998   99999999999999999999999999986432211  11


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+...|++||...+..++.++|||||||++|||+||+.||.......      ....+.... ...+.   .....+.
T Consensus       160 ~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~------~~~~i~~~~-~~~p~---~~~~~~~  229 (324)
T cd05589         160 TFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEE------VFDSIVNDE-VRYPR---FLSREAI  229 (324)
T ss_pred             ccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCC-CCCCC---CCCHHHH
Confidence            2224556788898888888899999999999999999999987433111      011111111 01111   1234567


Q ss_pred             HHHHHcccCCCCCCC-----CHHHHHHH
Q 002875          841 DVALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +++.+||+.||++||     ++++++++
T Consensus       230 ~li~~~L~~dP~~R~~~~~~~~~~l~~~  257 (324)
T cd05589         230 SIMRRLLRRNPERRLGSGEKDAEDVKKQ  257 (324)
T ss_pred             HHHHHHhhcCHhHcCCCCCCCHHHHhhC
Confidence            899999999999999     57777654

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=1.3e-34  Score=304.94  Aligned_cols=245  Identities=16%  Similarity=0.174  Sum_probs=189.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ....+|+|+||.||+|+. .+|+.||+|++.... ...+.+.+|+.++++++||||+++++++..++..|+||||+++|+
T Consensus        13 ~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~   92 (267)
T cd06646          13 LIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGS   92 (267)
T ss_pred             hhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCc
Confidence            889999999999999995 678999999987543 234567889999999999999999999999999999999999999


Q ss_pred             hHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          690 LSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       690 L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      |.++++.  ..++.+...++.|++.|++|||+.   +|+|||+||+||++++++.+||+|||++........  ....+.
T Consensus        93 L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  169 (267)
T cd06646          93 LQDIYHVTGPLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGT  169 (267)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeecccccccCccccC
Confidence            9999864  347788889999999999999998   999999999999999999999999999875432211  111233


Q ss_pred             cccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          766 AWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       766 ~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      ..|.+||...   ...++.++|||||||++|||+||+.|+..........  ........+..   ..........+.++
T Consensus       170 ~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~l  244 (267)
T cd06646         170 PYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALF--LMSKSNFQPPK---LKDKTKWSSTFHNF  244 (267)
T ss_pred             ccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhhe--eeecCCCCCCC---CccccccCHHHHHH
Confidence            4567778663   3346778999999999999999999886433211100  00001111110   11111233567899


Q ss_pred             HHHcccCCCCCCCCHHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      +.+||..||++|||++++++++
T Consensus       245 i~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         245 VKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             HHHHhhCChhhCcCHHHHhcCC
Confidence            9999999999999999998865

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.2e-34  Score=303.88  Aligned_cols=243  Identities=17%  Similarity=0.224  Sum_probs=190.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|+..++..||||+++......+.+.+|++++++++||||+++++++.+ +..++||||+++|+|.
T Consensus        10 ~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~-~~~~lv~e~~~~~~L~   88 (262)
T cd05071          10 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLL   88 (262)
T ss_pred             EeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEECC-CCcEEEEEcCCCCcHH
Confidence            778899999999999998777789999998655556678899999999999999999998754 5689999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---ccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~  764 (872)
                      ++++.    ..++.+...++.|+++||+|+|+.   +|+||||||+||++++++.+||+|||.++.........   ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~  165 (262)
T cd05071          89 DFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF  165 (262)
T ss_pred             HHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcc
Confidence            99975    357888999999999999999998   99999999999999999999999999986543222111   112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||......++.++|||||||++|||+| |..||.+... ..     ...........   +...+....+.+++
T Consensus       166 ~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~-~~-----~~~~~~~~~~~---~~~~~~~~~l~~li  236 (262)
T cd05071         166 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN-RE-----VLDQVERGYRM---PCPPECPESLHDLM  236 (262)
T ss_pred             cceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh-HH-----HHHHHhcCCCC---CCccccCHHHHHHH
Confidence            234677888777778899999999999999999 5555543221 10     00111011001   11123345678999


Q ss_pred             HHcccCCCCCCCCHHHHHHHHccc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+|++.||++||+++++.+.|+..
T Consensus       237 ~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         237 CQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             HHHccCCcccCCCHHHHHHHHHHh
Confidence            999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=317.03  Aligned_cols=236  Identities=18%  Similarity=0.175  Sum_probs=191.3

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      .|.  ...++|+|.||+|+.+.. .+++.+|||.++++.    ...+....|-+++.-. +||.+++++.++++.++.|+
T Consensus       369 ~F~--~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~f  446 (694)
T KOG0694|consen  369 DFR--LLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFF  446 (694)
T ss_pred             ceE--EEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEE
Confidence            466  788999999999999986 678899999998753    3455566666665544 69999999999999999999


Q ss_pred             EEcccCCCChHHHhh-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc--cc
Q 002875          681 LYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ--LA  757 (872)
Q Consensus       681 v~ey~~~g~L~~~l~-~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~--~~  757 (872)
                      ||||+.|||+..+++ ...+.++...|+..|+.||+|||.+   +||+||||-+|||||.+|.+||+|||+++.--  ..
T Consensus       447 vmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~  523 (694)
T KOG0694|consen  447 VMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGD  523 (694)
T ss_pred             EEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEecccccccccCCCCC
Confidence            999999999877777 3567888889999999999999999   99999999999999999999999999998643  22


Q ss_pred             CCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          758 DGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       758 ~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      .+++-+|++.|.+||+.....|+.++|.|||||++|||++|+.||.+++..      +.+..+....    .........
T Consensus       524 ~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEe------e~FdsI~~d~----~~yP~~ls~  593 (694)
T KOG0694|consen  524 RTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEE------EVFDSIVNDE----VRYPRFLSK  593 (694)
T ss_pred             ccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHH------HHHHHHhcCC----CCCCCcccH
Confidence            333445788889999999999999999999999999999999999865421      1122222221    111123456


Q ss_pred             HHHHHHHHcccCCCCCCCCH
Q 002875          838 LVLDVALLCTRSTPSDRPSM  857 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~  857 (872)
                      +.+.++.+.+..+|++|--+
T Consensus       594 ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  594 EAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             HHHHHHHHHhccCcccccCC
Confidence            78888999999999999765

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=1.2e-34  Score=308.51  Aligned_cols=246  Identities=19%  Similarity=0.223  Sum_probs=191.2

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|+||.||++..      .++..||||.+.... ...+.+.+|++++++++||||++++++|...+..++||||
T Consensus         9 ~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   88 (288)
T cd05093           9 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY   88 (288)
T ss_pred             eccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEc
Confidence            778899999999999974      345679999987543 3356788999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC---------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccc
Q 002875          685 LPNGNLSEKIRT---------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG  749 (872)
Q Consensus       685 ~~~g~L~~~l~~---------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg  749 (872)
                      +++|+|.+++..               ..++.+...++.|++.||+|||+.   +++||||||+||++++++.+|++|||
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg  165 (288)
T cd05093          89 MKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFG  165 (288)
T ss_pred             CCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEEeccCC
Confidence            999999999863               257888899999999999999998   99999999999999999999999999


Q ss_pred             ccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccc
Q 002875          750 FKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNEN  824 (872)
Q Consensus       750 ~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  824 (872)
                      +++........    ...+...|.+||......++.++|||||||++|||+| |..||.......  .    ...+....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~--~----~~~i~~~~  239 (288)
T cd05093         166 MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE--V----IECITQGR  239 (288)
T ss_pred             ccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--H----HHHHHcCC
Confidence            98644221111    1112234677888877788899999999999999999 666665332110  0    00111110


Q ss_pred             ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          825 EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       825 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ......   ....++.+++.+||+.||.+|||++|+.+.|+.+..
T Consensus       240 ~~~~~~---~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~  281 (288)
T cd05093         240 VLQRPR---TCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAK  281 (288)
T ss_pred             cCCCCC---CCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence            000011   122457899999999999999999999999987753

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=6.1e-35  Score=320.35  Aligned_cols=243  Identities=14%  Similarity=0.076  Sum_probs=186.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||++.. .+|+.||+|.++...    ...+.+.+|+.+++.++|||||++++++.+++..|+|||||+
T Consensus        47 ~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~  126 (370)
T cd05621          47 VVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMP  126 (370)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCC
Confidence            788999999999999986 568899999997422    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---CCc
Q 002875          687 NGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---SFP  762 (872)
Q Consensus       687 ~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~~~  762 (872)
                      +|+|.+++.. ..+......++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.......   ...
T Consensus       127 gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~  203 (370)
T cd05621         127 GGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTA  203 (370)
T ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecccceecccCCceecccC
Confidence            9999999976 346777888999999999999999   999999999999999999999999999876432211   122


Q ss_pred             ccccccCchhhhccc----CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          763 AKIAWTESGEFYNAM----KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~----~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      .++..|++||.....    .++.++||||+||++|||+||+.||.......      ....+.........+........
T Consensus       204 ~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~------~~~~i~~~~~~~~~p~~~~~s~~  277 (370)
T cd05621         204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVG------TYSKIMDHKNSLNFPEDVEISKH  277 (370)
T ss_pred             CCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCcccCCCCcccCCHH
Confidence            355667888877543    36788999999999999999999997543211      11111111000001111122345


Q ss_pred             HHHHHHHcccCCCCC--CCCHHHHHHH
Q 002875          839 VLDVALLCTRSTPSD--RPSMEEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~--Rpt~~~v~~~  863 (872)
                      +.+++..|+..+|.+  ||+++|++++
T Consensus       278 ~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         278 AKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             HHHHHHHHccCchhccCCCCHHHHhcC
Confidence            667777888755544  8999999876

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=8.6e-35  Score=308.02  Aligned_cols=247  Identities=17%  Similarity=0.227  Sum_probs=187.9

Q ss_pred             hhcCcchhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  677 (872)
                      +.|+  ....+|+|+||.||+|..      .+++.||||++....  .....+.+|+.++++++||||+++++++.+...
T Consensus         6 ~~~~--~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           6 EKIT--MSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             HHce--eeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            3455  788999999999999864      346789999986432  234567889999999999999999999999999


Q ss_pred             eEEEEcccCCCChHHHhhCC------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeE
Q 002875          678 AYLLYDYLPNGNLSEKIRTK------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL  745 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~~------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki  745 (872)
                      .++||||+++|+|.++++..            .++.+...++.|+++|++|||+.   +++||||||+||++++++.+|+
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~~~l  160 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKI  160 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCCEEE
Confidence            99999999999999998641            25677889999999999999998   9999999999999999999999


Q ss_pred             ccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccc
Q 002875          746 AEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       746 ~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      +|||+++........    ...+...|++||......++.++|||||||++|||+| |..||.+... ...     ....
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~-~~~-----~~~~  234 (277)
T cd05062         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN-EQV-----LRFV  234 (277)
T ss_pred             CCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH-HHH-----HHHH
Confidence            999998643221111    1112334677888777778899999999999999999 4566543221 110     0000


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      ........+   ......+.+++.+|++.||++|||+.|++++|++
T Consensus       235 ~~~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         235 MEGGLLDKP---DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             HcCCcCCCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            000000001   1123467889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=6.4e-35  Score=314.25  Aligned_cols=236  Identities=18%  Similarity=0.179  Sum_probs=180.2

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhc-cCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|.. .+|+.||||.++...    ...+....|..++.. .+||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999986 568899999997532    123344455566654 5899999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++..  ..+..+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~  157 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFC  157 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCcccccc
Confidence            999999865  356777888999999999999998   99999999999999999999999999986532211  11223


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|.+||...+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~ll  227 (316)
T cd05592         158 GTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDE------LFDSILNDR-PHFPR---WISKEAKDCL  227 (316)
T ss_pred             CCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHHHHH
Confidence            4566888898888788999999999999999999999987543211      111111111 11111   1224567888


Q ss_pred             HHcccCCCCCCCCHH-HHHH
Q 002875          844 LLCTRSTPSDRPSME-EALK  862 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~-~v~~  862 (872)
                      .+||+.||++||++. ++.+
T Consensus       228 ~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05592         228 SKLFERDPTKRLGVDGDIRQ  247 (316)
T ss_pred             HHHccCCHHHcCCChHHHHc
Confidence            999999999999875 4543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-35  Score=324.04  Aligned_cols=242  Identities=16%  Similarity=0.121  Sum_probs=191.5

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|... +|+.||||+++...    ...+.+.+|+.+++.++||||+++++++.+++..|+||||++
T Consensus         5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   84 (350)
T cd05573           5 VIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMP   84 (350)
T ss_pred             EEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCC
Confidence            7789999999999999964 79999999997532    335678889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC------
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------  758 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~------  758 (872)
                      +|+|.+++...  .+......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.......      
T Consensus        85 ~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~  161 (350)
T cd05573          85 GGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYL  161 (350)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccc
Confidence            99999999764  57788889999999999999998   99999999999999999999999999986543222      


Q ss_pred             -------------------------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc
Q 002875          759 -------------------------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI  813 (872)
Q Consensus       759 -------------------------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~  813 (872)
                                               .....++..|.+||......++.++|||||||++|||+||+.||.......... 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~-  240 (350)
T cd05573         162 NDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYN-  240 (350)
T ss_pred             cccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHH-
Confidence                                     111224556788898888888999999999999999999999987544211100 


Q ss_pred             cccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCC-HHHHHHH
Q 002875          814 DGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS-MEEALKL  863 (872)
Q Consensus       814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt-~~~v~~~  863 (872)
                       . +.........+..   .....++.+++..|+. ||++||+ ++|++++
T Consensus       241 -~-i~~~~~~~~~p~~---~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         241 -K-IINWKESLRFPPD---PPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             -H-HhccCCcccCCCC---CCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence             0 0000000001001   1123467788889997 9999999 9999876

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.8e-35  Score=310.26  Aligned_cols=244  Identities=15%  Similarity=0.119  Sum_probs=189.3

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      +..+.+|+|+||.||++.. .+|+.||||++.....    ....+.+|+.++++++|||||++++++.+++..++||||+
T Consensus         3 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   82 (285)
T cd05605           3 RHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLM   82 (285)
T ss_pred             eEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEecc
Confidence            3678899999999999985 5789999999975322    2345678999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-C
Q 002875          686 PNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-S  760 (872)
Q Consensus       686 ~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~  760 (872)
                      ++|+|.+++..    ..++.....++.|++.|++|||+.   +|+||||||+||++++++.++|+|||++........ .
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~  159 (285)
T cd05605          83 NGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIR  159 (285)
T ss_pred             CCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCccc
Confidence            99999988753    357888899999999999999998   999999999999999999999999999875432211 1


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+...|.+||......++.++||||+||++|||++|+.||.+.......  .. +.........   .........+.
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~--~~-~~~~~~~~~~---~~~~~~~~~~~  233 (285)
T cd05605         160 GRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKR--EE-VERRVKEDQE---EYSEKFSEAAR  233 (285)
T ss_pred             cccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHH--HH-HHHHhhhccc---ccCcccCHHHH
Confidence            112344577888887777888999999999999999999998753321100  00 0011111101   11112334577


Q ss_pred             HHHHHcccCCCCCCC-----CHHHHHHH
Q 002875          841 DVALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +++.+||+.||++||     ++++++++
T Consensus       234 ~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         234 SICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             HHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence            899999999999999     88898765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=7.4e-35  Score=312.29  Aligned_cols=246  Identities=22%  Similarity=0.288  Sum_probs=187.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCc--EEEEEEeecc--chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGI--TVSVKKIEWG--ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~--~vavK~~~~~--~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|.. .+|.  .+|+|.++..  ....+.+.+|++++.++ +||||+++++++.+.+..|+||||+
T Consensus        11 ~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (303)
T cd05088          11 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   90 (303)
T ss_pred             eeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeC
Confidence            778899999999999986 3554  4688877642  23456788899999999 8999999999999999999999999


Q ss_pred             CCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          686 PNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       686 ~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      ++|+|.++++..                  .++.+.+.++.|++.|++|||+.   +|+||||||+||++++++.+||+|
T Consensus        91 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~~~~kl~d  167 (303)
T cd05088          91 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIAD  167 (303)
T ss_pred             CCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCCCcEEeCc
Confidence            999999998642                  35778899999999999999998   999999999999999999999999


Q ss_pred             ccccccccccCCCCcc-cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccc
Q 002875          748 FGFKYLTQLADGSFPA-KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENE  825 (872)
Q Consensus       748 fg~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  825 (872)
                      ||+++........... ....|.+||......++.++|||||||++|||+| |+.||.......      ..........
T Consensus       168 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~------~~~~~~~~~~  241 (303)
T cd05088         168 FGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE------LYEKLPQGYR  241 (303)
T ss_pred             cccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHH------HHHHHhcCCc
Confidence            9998643211111111 1223567787777778889999999999999998 887775332111      0001100000


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ...+   ......+.+++.+||+.+|++||++++++..+..+-.
T Consensus       242 ~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~  282 (303)
T cd05088         242 LEKP---LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE  282 (303)
T ss_pred             CCCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            0001   1123457789999999999999999999999876543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1e-34  Score=319.91  Aligned_cols=244  Identities=17%  Similarity=0.211  Sum_probs=186.2

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|+.      ..++.||||+++...  ...+.+.+|+++++++. |||||+++|+|.+.+..++||
T Consensus        41 ~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~  120 (401)
T cd05107          41 LGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIIT  120 (401)
T ss_pred             hhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEE
Confidence            778999999999999984      245689999997542  22456788999999997 999999999999999999999


Q ss_pred             cccCCCChHHHhhCC-----------------------------------------------------------------
Q 002875          683 DYLPNGNLSEKIRTK-----------------------------------------------------------------  697 (872)
Q Consensus       683 ey~~~g~L~~~l~~~-----------------------------------------------------------------  697 (872)
                      |||++|+|.++++..                                                                 
T Consensus       121 E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (401)
T cd05107         121 EYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVK  200 (401)
T ss_pred             eccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhh
Confidence            999999999998642                                                                 


Q ss_pred             -----------------------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          698 -----------------------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       698 -----------------------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                                                         .++.+...++.|++.||+|||+.   +|+||||||+||++++++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrdlkp~NiLl~~~~~  277 (401)
T cd05107         201 YADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK---NCVHRDLAARNVLICEGKL  277 (401)
T ss_pred             hhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcCcccCCcceEEEeCCCE
Confidence                                               24456678999999999999998   9999999999999999999


Q ss_pred             eeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccc
Q 002875          743 PHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~  817 (872)
                      +|++|||+++........    ...+...|.+||......++.++|||||||++|||++ |+.|+.......      ..
T Consensus       278 ~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~------~~  351 (401)
T cd05107         278 VKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNE------QF  351 (401)
T ss_pred             EEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchH------HH
Confidence            999999998753221110    1112233667787777778889999999999999998 677765322111      00


Q ss_pred             ccccccc-ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          818 GEMYNEN-EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       818 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ....... ....+.   ....++.+++.+||..+|++||+++|+++.|+.+
T Consensus       352 ~~~~~~~~~~~~p~---~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         352 YNAIKRGYRMAKPA---HASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             HHHHHcCCCCCCCC---CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            0100000 000111   1234678899999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=5.6e-35  Score=315.17  Aligned_cols=237  Identities=16%  Similarity=0.144  Sum_probs=185.5

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.+|+|+||.||+|.. .+++.||||+++...    ...+.+..|+++++.+ +||||+++++++.+.+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999986 468899999997532    2344566788888777 699999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      |+|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.......  ....
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFC  157 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCccccee
Confidence            9999988754  57888899999999999999998   999999999999999999999999999864221111  1122


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      +...|.+||+..+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   .....+.+++
T Consensus       158 g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~li  227 (318)
T cd05570         158 GTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDE------LFQSILEDE-VRYPR---WLSKEAKSIL  227 (318)
T ss_pred             cCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHH------HHHHHHcCC-CCCCC---cCCHHHHHHH
Confidence            4456788898888888999999999999999999999986433111      011111111 11111   1234577899


Q ss_pred             HHcccCCCCCCCCH-----HHHHHH
Q 002875          844 LLCTRSTPSDRPSM-----EEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~-----~~v~~~  863 (872)
                      .+||+.||++||++     .+++++
T Consensus       228 ~~~l~~dP~~R~s~~~~~~~~ll~~  252 (318)
T cd05570         228 KSFLTKNPEKRLGCLPTGEQDIKGH  252 (318)
T ss_pred             HHHccCCHHHcCCCCCCCHHHHhcC
Confidence            99999999999999     887654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.8e-34  Score=302.57  Aligned_cols=242  Identities=18%  Similarity=0.246  Sum_probs=190.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...++..||+|.++......+.+.+|+.++++++|||++++++++. .+..++||||+++|+|.
T Consensus        10 ~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~   88 (260)
T cd05070          10 LIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMSKGSLL   88 (260)
T ss_pred             hhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecCCCcHH
Confidence            78899999999999999888899999999876555677899999999999999999999885 45689999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---ccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~  764 (872)
                      ++++.    ..++.++..++.|++.|++|||+.   +|+||||||+||++++++.+|++|||++..........   ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  165 (260)
T cd05070          89 DFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKF  165 (260)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCC
Confidence            99864    357888999999999999999998   99999999999999999999999999986543221111   111


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||......++.++|||||||++|||+| |..||.+.....      ....+........+   .+....+.+++
T Consensus       166 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~li  236 (260)
T cd05070         166 PIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNRE------VLEQVERGYRMPCP---QDCPISLHELM  236 (260)
T ss_pred             CccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHH------HHHHHHcCCCCCCC---CcCCHHHHHHH
Confidence            223677787777778889999999999999999 666665322110      01111111101111   12334688999


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .+|++.||++|||++++.+.|+.
T Consensus       237 ~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         237 LQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             HHHcccCcccCcCHHHHHHHHhc
Confidence            99999999999999999998875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=4.6e-35  Score=316.77  Aligned_cols=232  Identities=16%  Similarity=0.105  Sum_probs=178.5

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHH-HHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEF-ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e-~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||+||+|.. .+|+.||||++....    ...+.+.+| ..+++.++|||||++++++.+.+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            3689999999999986 579999999997532    122333344 3456789999999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      |+|.+++...  .++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFC  157 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCcccccc
Confidence            9999998753  46777888999999999999999   999999999999999999999999999864322111  1122


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|++||...+..++.++|||||||++|||+||+.||.......      ....+.... ....+   .....+.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~li  227 (323)
T cd05575         158 GTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAE------MYDNILNKP-LRLKP---NISVSARHLL  227 (323)
T ss_pred             CChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHHHHH
Confidence            4555778898888888899999999999999999999987532111      111111111 11111   1234577899


Q ss_pred             HHcccCCCCCCCCHH
Q 002875          844 LLCTRSTPSDRPSME  858 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~  858 (872)
                      .+|++.||++||++.
T Consensus       228 ~~~l~~~p~~R~~~~  242 (323)
T cd05575         228 EGLLQKDRTKRLGAK  242 (323)
T ss_pred             HHHhhcCHHhCCCCC
Confidence            999999999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1e-34  Score=310.29  Aligned_cols=245  Identities=20%  Similarity=0.216  Sum_probs=184.6

Q ss_pred             hhhhccCCCCCceeeeecCC---------------CcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEec
Q 002875          612 ECEEAARPQSAAGCKAVLPT---------------GITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYN  674 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~---------------g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~  674 (872)
                      ..+.||+|+||.||++....               ...||||.++...  ...+.+.+|++++++++||||+++++++..
T Consensus         9 ~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~   88 (295)
T cd05097           9 LKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVS   88 (295)
T ss_pred             ehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcC
Confidence            77899999999999987532               2358999987532  234578899999999999999999999999


Q ss_pred             CCeeEEEEcccCCCChHHHhhCC--------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC
Q 002875          675 RHQAYLLYDYLPNGNLSEKIRTK--------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN  740 (872)
Q Consensus       675 ~~~~~lv~ey~~~g~L~~~l~~~--------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~  740 (872)
                      .+..++||||+++|+|.+++...              .++.+...++.|++.|++|||+.   +++||||||+||+++++
T Consensus        89 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nill~~~  165 (295)
T cd05097          89 DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATRNCLVGNH  165 (295)
T ss_pred             CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccChhhEEEcCC
Confidence            99999999999999999998542              36778889999999999999998   99999999999999999


Q ss_pred             CCeeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcC--CCCCCCCCCCCCcccc
Q 002875          741 MEPHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN--GRLTNAGSSLQNKPID  814 (872)
Q Consensus       741 ~~~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg--~~p~~~~~~~~~~~~~  814 (872)
                      +.+|++|||++.........    .......|.+||......++.++|||||||++|||+|+  ..||.......  .. 
T Consensus       166 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~--~~-  242 (295)
T cd05097         166 YTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQ--VI-  242 (295)
T ss_pred             CcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHH--HH-
Confidence            99999999998653222111    11122346677877777788999999999999999984  44544221100  00 


Q ss_pred             cccccccc----ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          815 GLLGEMYN----ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       815 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ....+...    .......+   .....+.+++.+||+.||++||||++|++.|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         243 ENTGEFFRNQGRQIYLSQTP---LCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHHHhhhhccccccCCCCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            00000000    00000011   12346889999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=2.2e-34  Score=301.80  Aligned_cols=242  Identities=19%  Similarity=0.265  Sum_probs=192.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...+++.||||.+.......+.+.+|+.++++++||||+++++++. .+..++||||+++|+|.
T Consensus        10 ~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~   88 (260)
T cd05067          10 LVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYMENGSLV   88 (260)
T ss_pred             eeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcCCCCCHH
Confidence            77899999999999999999999999999876666778899999999999999999999874 46789999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---ccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~  764 (872)
                      +++..    ..++.+...++.|++.||+|||+.   +++||||||+||++++++.++++|||++..........   ...
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  165 (260)
T cd05067          89 DFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKF  165 (260)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcc
Confidence            99864    347888899999999999999998   99999999999999999999999999986543211111   112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||+.....++.++|||||||++||++| |+.||.+......   .........   ....   .....++.+++
T Consensus       166 ~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~---~~~~~~~~~---~~~~---~~~~~~~~~li  236 (260)
T cd05067         166 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEV---IQNLERGYR---MPRP---DNCPEELYELM  236 (260)
T ss_pred             cccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHH---HHHHHcCCC---CCCC---CCCCHHHHHHH
Confidence            234677888877778889999999999999999 7777764322110   000111110   0101   11234688899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .+|++.+|++|||++++.+.|+.
T Consensus       237 ~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         237 RLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             HHHccCChhhCCCHHHHHHHhhc
Confidence            99999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1.1e-34  Score=306.82  Aligned_cols=238  Identities=15%  Similarity=0.131  Sum_probs=182.6

Q ss_pred             ccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          616 AARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       616 ~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ||+|+||.||++.. .+|+.||+|.+....    ...+.+..|++++++++||||+++++++.++...|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            68999999999985 579999999996422    1234456689999999999999999999999999999999999999


Q ss_pred             HHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCcccc
Q 002875          691 SEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPAKI  765 (872)
Q Consensus       691 ~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~~~~  765 (872)
                      .+++..    ..++.....++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++........ ....+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~  157 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGT  157 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCC
Confidence            988854    357788889999999999999998   999999999999999999999999999865432211 112234


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||+.....++.++||||+||++|||+||+.||........  .................   .....++.+++.+
T Consensus       158 ~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~  232 (277)
T cd05607         158 NGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVA--KEELKRRTLEDEVKFEH---QNFTEESKDICRL  232 (277)
T ss_pred             CCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhh--HHHHHHHhhcccccccc---ccCCHHHHHHHHH
Confidence            457788888777789999999999999999999999864322111  00011111111100000   1223457889999


Q ss_pred             cccCCCCCCCCHHHHH
Q 002875          846 CTRSTPSDRPSMEEAL  861 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~  861 (872)
                      ||+.||++||+++|++
T Consensus       233 ~L~~~P~~R~~~~~~~  248 (277)
T cd05607         233 FLAKKPEDRLGSREKN  248 (277)
T ss_pred             HhccCHhhCCCCccch
Confidence            9999999999996655

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-34  Score=305.26  Aligned_cols=242  Identities=23%  Similarity=0.303  Sum_probs=185.4

Q ss_pred             hhccCCCCCceeeeecC-CCc--EEEEEEeecc--chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVLP-TGI--TVSVKKIEWG--ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~-~g~--~vavK~~~~~--~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.+|+|+||.||+|... +|.  .+|+|.++..  ....+.+.+|+++++++ +||||++++++|...+..++||||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            36899999999999874 444  5788988642  23456788899999999 799999999999999999999999999


Q ss_pred             CChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccc
Q 002875          688 GNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG  749 (872)
Q Consensus       688 g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg  749 (872)
                      |+|.+++...                  .++.+...++.|++.|++|||+.   +++||||||+||++++++.+|++|||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl~dfg  157 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFG  157 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEECCCC
Confidence            9999998642                  46788899999999999999998   99999999999999999999999999


Q ss_pred             ccccccccCCCCc-ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccC
Q 002875          750 FKYLTQLADGSFP-AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       750 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      ++........... .....|.+||+.....++.++|||||||++|||+| |..||.......      ............
T Consensus       158 l~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~------~~~~~~~~~~~~  231 (270)
T cd05047         158 LSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE------LYEKLPQGYRLE  231 (270)
T ss_pred             CccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHH------HHHHHhCCCCCC
Confidence            9853221111111 11223677888877788899999999999999997 777775322110      011111100000


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..   ......+.+++.+||+.||.+|||++|+++.|+.+
T Consensus       232 ~~---~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         232 KP---LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             CC---CcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence            01   11234577999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=6.3e-35  Score=320.82  Aligned_cols=192  Identities=13%  Similarity=0.125  Sum_probs=164.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    .....+.+|+.++.+++|||||++++++.+.+..|+|||||+
T Consensus         5 ~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~   84 (363)
T cd05628           5 SLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLP   84 (363)
T ss_pred             EeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCC
Confidence            778999999999999975 578999999997532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC------
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------  758 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~------  758 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......      
T Consensus        85 gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~  161 (363)
T cd05628          85 GGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYR  161 (363)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCcccccccccccccc
Confidence            9999999975  357788889999999999999999   99999999999999999999999999986432110      


Q ss_pred             -------------------------------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCC
Q 002875          759 -------------------------------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGS  806 (872)
Q Consensus       759 -------------------------------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~  806 (872)
                                                     .....++..|.+||+..+..++.++|||||||++|||+||+.||.+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~  240 (363)
T cd05628         162 NLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET  240 (363)
T ss_pred             cccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCC
Confidence                                           001134566788999888888999999999999999999999997543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-39  Score=325.58  Aligned_cols=461  Identities=25%  Similarity=0.371  Sum_probs=328.2

Q ss_pred             CCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCcccc
Q 002875            8 LPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEIS   87 (872)
Q Consensus         8 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~   87 (872)
                      +.++..|  +..+++|++++|+++ ..|.++..+..++.|+.++|+++ .+|..+.++.+|+.|+.++|.+. .+|++++
T Consensus        60 l~~dl~n--L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~  134 (565)
T KOG0472|consen   60 LREDLKN--LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIG  134 (565)
T ss_pred             ccHhhhc--ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHH
Confidence            4556667  888999999999997 56789999999999999999998 68889999999999999999998 6888999


Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEE
Q 002875           88 QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYL  167 (872)
Q Consensus        88 ~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  167 (872)
                      .+..|..|+..+|+++ ..|.++.++.+|..|++.+|++....|..+. ++.|++|+...|.+. .+|..++.|..|..|
T Consensus       135 ~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  135 RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELL  211 (565)
T ss_pred             HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence            9999999999999998 5788899999999999999999876666666 999999999988765 688899999999999


Q ss_pred             EeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC
Q 002875          168 DIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       168 ~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      ++..|++. .+| +|.++..|.+|+++.|+|..........+.++..|||.+|+++ ..|+.+.-+.+|..||+|+|.++
T Consensus       212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             Hhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence            99999998 566 8999999999999999998554444568999999999999998 57899999999999999999999


Q ss_pred             CCCCccccCCCCcceeecccccccccCCccCCCCC--CCcEEe-------cCCCe----eeecCCCCCC----CCCceeE
Q 002875          248 GTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNS--KLRWVD-------VSTNN----FNGSIPPDIC----SGGVLFK  310 (872)
Q Consensus       248 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~--~L~~L~-------ls~n~----l~~~~p~~~~----~~~~l~~  310 (872)
                       .+|..++++ +|+.|-+.+|.+...-.+.+.+-+  -|++|.       +|.-.    =.+..|.+.+    ..-..+.
T Consensus       289 -~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki  366 (565)
T KOG0472|consen  289 -SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI  366 (565)
T ss_pred             -cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence             467789999 999999999987532111111000  011110       00000    0000011111    1112334


Q ss_pred             EEcCCCcCCCCCCCCCCCC--CCCcEEEcCCCccccccCccCCCCCCCcEE-EcCCCcCCCCCCchhhhhcccccccccC
Q 002875          311 LILFSNNFTGSLSPSLSNC--SSLVRLRLEDNSFSGEIPLKFSQLPDINYI-DLSRNGFTGGIPTDINQASKLEYFNVSN  387 (872)
Q Consensus       311 l~l~~n~~~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  387 (872)
                      |..+.-+++..+...|..-  .-....+++.|++. ++|..+..+..+.+. ++++|.+ +.+|..+..+++|..|++++
T Consensus       367 L~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~N  444 (565)
T KOG0472|consen  367 LDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSN  444 (565)
T ss_pred             hcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeeccc
Confidence            4444444443332222211  12455666666665 445444444444332 3333333 35566666666666666666


Q ss_pred             CCCCCCcCCcccCCCcccccccccccccCCCCCCCC-cCCccceeeccccccCCCCCCcccccccCcEEEccCccceecc
Q 002875          388 NPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFK-SCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSI  466 (872)
Q Consensus       388 n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  466 (872)
                      |..  ..+|...+.+..||.++++.|++. .+|.+. ....++.+-.+.|++....|+.+.++.+|.+|||.+|.+. .+
T Consensus       445 N~L--n~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~I  520 (565)
T KOG0472|consen  445 NLL--NDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QI  520 (565)
T ss_pred             chh--hhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hC
Confidence            633  235556666666666666666443 223321 2233344444556666555556888888888888888877 56


Q ss_pred             chhccCCCCCCEEECCCCccc
Q 002875          467 PEVLARLPVLGVLDLSHNSLS  487 (872)
Q Consensus       467 ~~~~~~l~~L~~L~Ls~N~l~  487 (872)
                      |..+++|.+|++|+|++|.++
T Consensus       521 Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  521 PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChhhccccceeEEEecCCccC
Confidence            667788888888888888887

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.7e-35  Score=323.54  Aligned_cols=242  Identities=13%  Similarity=0.094  Sum_probs=187.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|+++++.++||||+++++++.+++..|+|||||+
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~   84 (364)
T cd05599           5 SIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLP   84 (364)
T ss_pred             EEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCC
Confidence            778999999999999986 578999999997532    234567789999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-----
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-----  759 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-----  759 (872)
                      +|+|.+++...  .+......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......     
T Consensus        85 ~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  161 (364)
T cd05599          85 GGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYR  161 (364)
T ss_pred             CcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceeccccccccccc
Confidence            99999998753  46778889999999999999999   999999999999999999999999999864321100     


Q ss_pred             -----------------------------------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCC
Q 002875          760 -----------------------------------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA  804 (872)
Q Consensus       760 -----------------------------------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~  804 (872)
                                                         ....++..|++||+.....++.++||||+||++|||+||..||..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~  241 (364)
T cd05599         162 ILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCS  241 (364)
T ss_pred             cccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCC
Confidence                                               011245568889988888889999999999999999999999875


Q ss_pred             CCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCC---HHHHHHH
Q 002875          805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS---MEEALKL  863 (872)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt---~~~v~~~  863 (872)
                      ......  ..... ........  +. .......+.+++.+|+. +|.+|++   ++|++++
T Consensus       242 ~~~~~~--~~~i~-~~~~~~~~--~~-~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h  296 (364)
T cd05599         242 DNPQET--YRKII-NWKETLQF--PD-EVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSH  296 (364)
T ss_pred             CCHHHH--HHHHH-cCCCccCC--CC-CCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcC
Confidence            432110  00000 00000000  00 01122456677778886 9999998   9888764

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.6e-34  Score=302.09  Aligned_cols=240  Identities=14%  Similarity=0.169  Sum_probs=184.1

Q ss_pred             hccCCCCCceeeeec---CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          615 EAARPQSAAGCKAVL---PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~---~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      .+|+|+||.||+|+.   .++..||||.+.....  ..+.+.+|+.++++++||||++++++|.. +..++||||+++|+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCCCC
Confidence            489999999999975   3466799999875432  34668899999999999999999999864 57899999999999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---c-
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---P-  762 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~-  762 (872)
                      |.+++..   ..++.+..+++.|+++|++|||+.   +++||||||+||+++.++.+|++|||+++.........   . 
T Consensus        81 L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  157 (257)
T cd05115          81 LNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSA  157 (257)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCC
Confidence            9999864   457888999999999999999998   99999999999999999999999999986543221111   1 


Q ss_pred             -ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          763 -AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       763 -~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                       .....|.+||......++.++|||||||++||+++ |..||........   .......   .....++   ....++.
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~---~~~~~~~---~~~~~~~---~~~~~l~  228 (257)
T cd05115         158 GKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEV---MSFIEQG---KRLDCPA---ECPPEMY  228 (257)
T ss_pred             CCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHH---HHHHHCC---CCCCCCC---CCCHHHH
Confidence             11233667787777778889999999999999997 8888764321110   0000000   0011111   1234677


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +++.+||+.||++||++.+|.+.|+.+
T Consensus       229 ~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         229 ALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             HHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=2.2e-34  Score=301.28  Aligned_cols=240  Identities=15%  Similarity=0.176  Sum_probs=184.7

Q ss_pred             hccCCCCCceeeeec---CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          615 EAARPQSAAGCKAVL---PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~---~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ++|+|+||.||+|..   .+++.||||+++...   ...+.+.+|+.++++++||||++++|++.. +..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA-ESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCcEEEEecCCCC
Confidence            589999999999964   467899999986533   235678889999999999999999999864 5678999999999


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC----Cc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS----FP  762 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~----~~  762 (872)
                      +|.+++..  ..++.....++.|++.|++|+|+.   +|+||||||+||++++++.+||+|||+++........    ..
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  157 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTH  157 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCC
Confidence            99999865  357888899999999999999998   9999999999999999999999999998754322211    01


Q ss_pred             -ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          763 -AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       763 -~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                       .....|++||......++.++|||||||++|||+| |..||.+.....   ........   .....+.   ....++.
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~~i~~~---~~~~~~~---~~~~~l~  228 (257)
T cd05116         158 GKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNE---VTQMIESG---ERMECPQ---RCPPEMY  228 (257)
T ss_pred             CCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHHCC---CCCCCCC---CCCHHHH
Confidence             11123567787776678889999999999999998 777776432211   00111110   0011111   1234577


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +++.+||+.||++||++++|.+.|++.
T Consensus       229 ~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         229 DLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             HHHHHHhccCchhCcCHHHHHHHHhcc
Confidence            899999999999999999999999763

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=8e-35  Score=311.34  Aligned_cols=245  Identities=21%  Similarity=0.280  Sum_probs=187.2

Q ss_pred             hhhhccCCCCCceeeeecC-CCc--EEEEEEeecc--chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGI--TVSVKKIEWG--ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~--~vavK~~~~~--~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|... +|.  .+|+|.++..  ....+.+.+|+++++++ +||||+++++++.+.+..|+||||+
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~   85 (297)
T cd05089           6 FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYA   85 (297)
T ss_pred             eeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEec
Confidence            6788999999999999864 343  5789888642  23355688899999999 7999999999999999999999999


Q ss_pred             CCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          686 PNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       686 ~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      ++|+|.++++..                  .++.+...++.|++.|++|||+.   +|+||||||+||++++++.+||+|
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~d  162 (297)
T cd05089          86 PYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIAD  162 (297)
T ss_pred             CCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCCeEEECC
Confidence            999999998642                  45778889999999999999998   999999999999999999999999


Q ss_pred             ccccccccccCCCCcc-cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccc
Q 002875          748 FGFKYLTQLADGSFPA-KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENE  825 (872)
Q Consensus       748 fg~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  825 (872)
                      ||++............ ....|.+||......++.++|||||||++|||+| |+.||.......      ..........
T Consensus       163 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~------~~~~~~~~~~  236 (297)
T cd05089         163 FGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAE------LYEKLPQGYR  236 (297)
T ss_pred             cCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH------HHHHHhcCCC
Confidence            9998643211111111 1223667788777778899999999999999998 878875432111      0001111000


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ...+   ......+.+++.+||+.+|.+|||++++++.|+.+.
T Consensus       237 ~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~  276 (297)
T cd05089         237 MEKP---RNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRML  276 (297)
T ss_pred             CCCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            0001   112346778999999999999999999999987664

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.5e-35  Score=318.27  Aligned_cols=233  Identities=16%  Similarity=0.121  Sum_probs=182.9

Q ss_pred             hhccCCCCCceeeeec----CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          614 EEAARPQSAAGCKAVL----PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      +.||+|+||.||++..    .+|+.||||++.....   ....+.+|++++++++||||+++++++.+++..|+||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5689999999998874    4789999999975322   23456778999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCc
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFP  762 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~  762 (872)
                      +|+|.+++.+.  .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~  158 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSF  158 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecc
Confidence            99999998653  57888899999999999999999   999999999999999999999999999875432211  112


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      .+...|++||......++.++|||||||++|||+||+.||.......      ....+.... ...+.   .....+.++
T Consensus       159 ~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~------~~~~i~~~~-~~~p~---~~~~~~~~l  228 (318)
T cd05582         159 CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE------TMTMILKAK-LGMPQ---FLSPEAQSL  228 (318)
T ss_pred             cCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHHHH
Confidence            24555788898877778889999999999999999999986433111      011111111 11111   123456788


Q ss_pred             HHHcccCCCCCCCCHHH
Q 002875          843 ALLCTRSTPSDRPSMEE  859 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~  859 (872)
                      +.+||+.||++||++.+
T Consensus       229 i~~~l~~~P~~R~~a~~  245 (318)
T cd05582         229 LRALFKRNPANRLGAGP  245 (318)
T ss_pred             HHHHhhcCHhHcCCCCC
Confidence            89999999999999443

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.9e-34  Score=304.37  Aligned_cols=235  Identities=17%  Similarity=0.227  Sum_probs=175.9

Q ss_pred             hccCCCCCceeeeecC-------------------------CCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeE
Q 002875          615 EAARPQSAAGCKAVLP-------------------------TGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRL  668 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~-------------------------~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l  668 (872)
                      .||+|+||.||+|...                         .+..||||.+..... ....+.+|+.++++++|||||++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            5899999999999741                         123689999865433 24567788999999999999999


Q ss_pred             EEEEecCCeeEEEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC----
Q 002875          669 LGFCYNRHQAYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM----  741 (872)
Q Consensus       669 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~----  741 (872)
                      +|+|.+....++||||+++|+|.+++..   ..++..+..++.|+++||+|||+.   +|+||||||+||++++.+    
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~Nill~~~~~~~~  158 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDK---NLVHGNVCAKNILLARLGLAEG  158 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCCcccEEEeccCcccC
Confidence            9999999999999999999999999864   357888999999999999999998   999999999999997643    


Q ss_pred             ---CeeEccccccccccccCCCCcccccccCchhhhc-ccCCcccccchhHHHHHHHHH-cCCCCCCCCCCCCCcccccc
Q 002875          742 ---EPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEIL-TNGRLTNAGSSLQNKPIDGL  816 (872)
Q Consensus       742 ---~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~-tg~~p~~~~~~~~~~~~~~~  816 (872)
                         .+|++|||++........ ...... |.+||... ...++.++|||||||++|||+ +|..|+........      
T Consensus       159 ~~~~~kl~d~g~~~~~~~~~~-~~~~~~-~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~------  230 (274)
T cd05076         159 TSPFIKLSDPGVSFTALSREE-RVERIP-WIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEK------  230 (274)
T ss_pred             ccceeeecCCccccccccccc-cccCCc-ccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHH------
Confidence               379999998754322111 112233 45566554 356788999999999999995 67777654321110      


Q ss_pred             ccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          817 LGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                       .......... ++   .....+.+++.+||+.+|++||||+++++.|+
T Consensus       231 -~~~~~~~~~~-~~---~~~~~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         231 -ERFYEKKHRL-PE---PSCKELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             -HHHHHhccCC-CC---CCChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence             0111111000 11   11235778999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.5e-34  Score=317.46  Aligned_cols=254  Identities=20%  Similarity=0.221  Sum_probs=191.3

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC----
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR----  675 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~----  675 (872)
                      +.+.|.  ..+.+|+|+||.||++.. .+++.||||++....   ...+.+.+|+.+++.++||||+++++++...    
T Consensus        15 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   92 (355)
T cd07874          15 VLKRYQ--NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLE   92 (355)
T ss_pred             hhhcee--EEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccc
Confidence            455666  788999999999999985 568899999997532   2345677899999999999999999998643    


Q ss_pred             --CeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          676 --HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       676 --~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                        ...|+||||+++ ++.+.+....++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus        93 ~~~~~~lv~e~~~~-~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Dfg~~~~  168 (355)
T cd07874          93 EFQDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLART  168 (355)
T ss_pred             ccceeEEEhhhhcc-cHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeCccccc
Confidence              357999999975 78888887788888999999999999999999   999999999999999999999999999875


Q ss_pred             ccccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc----------------ccc
Q 002875          754 TQLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI----------------DGL  816 (872)
Q Consensus       754 ~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~----------------~~~  816 (872)
                      ....... ...++..|++||...+..++.++|||||||++|||+||+.||.+......+..                ...
T Consensus       169 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (355)
T cd07874         169 AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPT  248 (355)
T ss_pred             CCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHH
Confidence            4332211 12245567888988887889999999999999999999999875431110000                000


Q ss_pred             ccccccc---------------cccC-CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 LGEMYNE---------------NEVG-SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 ~~~~~~~---------------~~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .......               ...+ ...........+.+++.+|++.||++|||++|++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         249 VRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             HHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence            0000000               0000 000001123457899999999999999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.3e-34  Score=313.54  Aligned_cols=244  Identities=14%  Similarity=0.099  Sum_probs=185.3

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|.. .+|+.||||+++...    ...+.+.+|+.++.++ +||||+++++++.+.+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            3689999999999986 567899999997532    2345577888888887 699999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++..  ..++..+..++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFC  157 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceeccc
Confidence            999998864  468888999999999999999999   99999999999999999999999999986422111  11223


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|++||+..+..++.++|||||||++|||+||+.||................+.....+...+.   .....+.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~li  234 (327)
T cd05617         158 GTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPR---FLSVKASHVL  234 (327)
T ss_pred             CCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCC---CCCHHHHHHH
Confidence            4556788898888888999999999999999999999986322211100000011111111111111   1224567889


Q ss_pred             HHcccCCCCCCCCH------HHHHHH
Q 002875          844 LLCTRSTPSDRPSM------EEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~------~~v~~~  863 (872)
                      .+|++.||++||++      +++.++
T Consensus       235 ~~~L~~dP~~R~~~~~~~~~~~i~~h  260 (327)
T cd05617         235 KGFLNKDPKERLGCQPQTGFSDIKSH  260 (327)
T ss_pred             HHHhccCHHHcCCCCCCCCHHHHHcC
Confidence            99999999999984      566544

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.4e-34  Score=307.42  Aligned_cols=243  Identities=19%  Similarity=0.207  Sum_probs=187.2

Q ss_pred             hhhhccCCCCCceeeeecC------CCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.+|+|+||.||+|...      +++.||||+++....  ..+.+.+|+.++++++|||||++++++.+.+..++++|
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e   88 (283)
T cd05091           9 FMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFS   88 (283)
T ss_pred             HHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEE
Confidence            7889999999999999852      357899999975432  24568889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeE
Q 002875          684 YLPNGNLSEKIRT------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL  745 (872)
Q Consensus       684 y~~~g~L~~~l~~------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki  745 (872)
                      |+++++|.+++..                  ..++.....++.|++.||+|+|+.   +|+||||||+||++++++.+||
T Consensus        89 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~kl  165 (283)
T cd05091          89 YCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKLNVKI  165 (283)
T ss_pred             cCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEecCCCceEe
Confidence            9999999999842                  246677889999999999999998   9999999999999999999999


Q ss_pred             ccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccc
Q 002875          746 AEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       746 ~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      +|||+++........    ...+...|.+||......++.++||||+||++|||+| |..|+.+... ..     ....+
T Consensus       166 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-~~-----~~~~i  239 (283)
T cd05091         166 SDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-QD-----VIEMI  239 (283)
T ss_pred             cccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH-HH-----HHHHH
Confidence            999998754322111    1112234677887776778889999999999999999 5555543221 11     11111


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .+......+   .+....+.+++..||+.+|++||+++|++..|+.
T Consensus       240 ~~~~~~~~~---~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         240 RNRQVLPCP---DDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             HcCCcCCCC---CCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            111111111   1233457789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.7e-34  Score=308.39  Aligned_cols=242  Identities=17%  Similarity=0.212  Sum_probs=192.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|+|+||.||+|.. .+|+.||+|.+.... ...+.+.+|+.++++++||||+++++++..++..|+||||+++|+
T Consensus        24 ~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~  103 (296)
T cd06654          24 RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGS  103 (296)
T ss_pred             eEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCC
Confidence            778899999999999985 678999999987543 235677889999999999999999999999999999999999999


Q ss_pred             hHHHhhCC-CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccccc
Q 002875          690 LSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIA  766 (872)
Q Consensus       690 L~~~l~~~-~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~  766 (872)
                      |.+++... .++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++........  ....+..
T Consensus       104 L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  180 (296)
T cd06654         104 LTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTP  180 (296)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCc
Confidence            99998753 58888999999999999999999   999999999999999999999999998765332211  1122444


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .|.+||......++.++|||||||++|||+||+.||.......... ..    .....+.  ..........+.+++.+|
T Consensus       181 ~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~-~~----~~~~~~~--~~~~~~~~~~l~~li~~~  253 (296)
T cd06654         181 YWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY-LI----ATNGTPE--LQNPEKLSAIFRDFLNRC  253 (296)
T ss_pred             cccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHH-HH----hcCCCCC--CCCccccCHHHHHHHHHH
Confidence            5778888877778889999999999999999999987543211110 00    0000000  011122334577899999


Q ss_pred             ccCCCCCCCCHHHHHHH
Q 002875          847 TRSTPSDRPSMEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~  863 (872)
                      |..||++|||++|++++
T Consensus       254 l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         254 LDMDVEKRGSAKELLQH  270 (296)
T ss_pred             CcCCcccCcCHHHHhhC
Confidence            99999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=3.5e-34  Score=298.54  Aligned_cols=240  Identities=20%  Similarity=0.236  Sum_probs=187.9

Q ss_pred             hhccCCCCCceeeeecCCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          614 EEAARPQSAAGCKAVLPTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      +.+|.|+||.||+|...+++.||+|.+.....  ....+.+|++++++++||||++++++|...+..++||||+++|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            36899999999999988899999999865432  2446788999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---Ccccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---FPAKI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---~~~~~  765 (872)
                      +++..   ..++.+...++.|++.|+.|+|+.   +++||||||+||++++++.+|++|||++.........   .....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~  157 (250)
T cd05085          81 SFLRKKKDELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIP  157 (250)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCc
Confidence            99864   347888899999999999999998   9999999999999999999999999998643221111   11112


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||+.....++.++|||||||++||++| |..||.......   ..........   ...+   ......+.+++.
T Consensus       158 ~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~---~~~~~~~~~~---~~~~---~~~~~~~~~li~  228 (250)
T cd05085         158 IKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQ---AREQVEKGYR---MSCP---QKCPDDVYKVMQ  228 (250)
T ss_pred             ccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHH---HHHHHHcCCC---CCCC---CCCCHHHHHHHH
Confidence            23677888877778889999999999999999 777775332111   0000000000   0001   122356789999


Q ss_pred             HcccCCCCCCCCHHHHHHHHc
Q 002875          845 LCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      +|++.+|++||++.|+++.|.
T Consensus       229 ~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         229 RCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             HHcccCcccCCCHHHHHHHhc
Confidence            999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-34  Score=301.94  Aligned_cols=242  Identities=20%  Similarity=0.257  Sum_probs=191.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|.|+||.||+|... |+.||||.+.......+.+.+|+.++++++|+||+++++++.+.+..++||||+++|+|.
T Consensus        10 ~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~   88 (256)
T cd05039          10 LGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLV   88 (256)
T ss_pred             ceeeeecCCCceEEEEEec-CcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHH
Confidence            7788999999999999864 889999999866555677888999999999999999999999989999999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAW  767 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~  767 (872)
                      +++..    ..++.....++.|++.|++|||+.   +++||||||+||+++.++.+||+|||.++........ ......
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~  164 (256)
T cd05039          89 DYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDS-GKLPVK  164 (256)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEccccccccccccccc-CCCccc
Confidence            99865    357889999999999999999999   9999999999999999999999999998765322221 112223


Q ss_pred             cCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          768 TESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       768 ~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      |.+||......++.++|||||||++|||++ |..||.......   ...........      .........+.+++.+|
T Consensus       165 ~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~li~~~  235 (256)
T cd05039         165 WTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD---VVPHVEKGYRM------EAPEGCPPEVYKVMKDC  235 (256)
T ss_pred             ccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHH---HHHHHhcCCCC------CCccCCCHHHHHHHHHH
Confidence            667787776778889999999999999998 777765332100   00000000000      00112235678899999


Q ss_pred             ccCCCCCCCCHHHHHHHHccc
Q 002875          847 TRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      |+.+|++|||++|+++.|+.+
T Consensus       236 l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         236 WELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             hccChhhCcCHHHHHHHHhcC
Confidence            999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.1e-34  Score=316.53  Aligned_cols=256  Identities=21%  Similarity=0.243  Sum_probs=191.4

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCC--
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH--  676 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--  676 (872)
                      .+.+.|.  ..+.||+|+||.||++.. .+|+.||||++...   ......+.+|+.++++++||||+++++++...+  
T Consensus        18 ~~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   95 (359)
T cd07876          18 TVLKRYQ--QLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSL   95 (359)
T ss_pred             hhhhceE--EEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCc
Confidence            3455666  889999999999999985 57899999999643   223556778999999999999999999986543  


Q ss_pred             ----eeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          677 ----QAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       677 ----~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                          ..|+||||+++ ++.+.+....++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        96 ~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~  171 (359)
T cd07876          96 EEFQDVYLVMELMDA-NLCQVIHMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLAR  171 (359)
T ss_pred             cccceeEEEEeCCCc-CHHHHHhccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCCCcc
Confidence                57999999975 77777777778888889999999999999999   99999999999999999999999999986


Q ss_pred             cccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc---------c-------c
Q 002875          753 LTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI---------D-------G  815 (872)
Q Consensus       753 ~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~---------~-------~  815 (872)
                      ....... ....++..|++||...+..++.++||||+||++|||+||+.||.+.+....+..         .       .
T Consensus       172 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (359)
T cd07876         172 TACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQP  251 (359)
T ss_pred             ccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            5322211 112244557888988888889999999999999999999999875432110000         0       0


Q ss_pred             ccccccccccc---------------CC-CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          816 LLGEMYNENEV---------------GS-SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       816 ~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .........+.               +. ..........+.+++.+||+.||++|||++|++++-
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp  316 (359)
T cd07876         252 TVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHP  316 (359)
T ss_pred             HHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCc
Confidence            00000000000               00 000001134578999999999999999999998763

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=307.85  Aligned_cols=242  Identities=21%  Similarity=0.245  Sum_probs=188.5

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hh---HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      -|.  ....||.|.||.||.|.. .+.+.||||+++-.. +.   -..+.+||..+.+++|||+|.+.|||..+...|||
T Consensus        27 lf~--dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLV  104 (948)
T KOG0577|consen   27 LFS--DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLV  104 (948)
T ss_pred             HHH--HHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHH
Confidence            355  788999999999999985 677899999997532 22   34578899999999999999999999999999999


Q ss_pred             EcccCCCChHHHh---hCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          682 YDYLPNGNLSEKI---RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       682 ~ey~~~g~L~~~l---~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ||||-| |-.|.+   ++.+..-++..|+.|.+.||+|||++   +.||||||+.|||+.+.|.+|++|||-|...... 
T Consensus       105 MEYClG-SAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA-  179 (948)
T KOG0577|consen  105 MEYCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA-  179 (948)
T ss_pred             HHHHhc-cHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhhcCch-
Confidence            999965 655554   45566677888999999999999999   9999999999999999999999999998765432 


Q ss_pred             CCCcccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          759 GSFPAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                       ....|++|+++||++-   ...|+-++||||+|+++.|++-.++|.+.-..+.     ..+.-.-++.+.-...   +.
T Consensus       180 -nsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMS-----ALYHIAQNesPtLqs~---eW  250 (948)
T KOG0577|consen  180 -NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-----ALYHIAQNESPTLQSN---EW  250 (948)
T ss_pred             -hcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHH-----HHHHHHhcCCCCCCCc---hh
Confidence             2234667778888764   3468889999999999999999888876422111     1111111122122222   33


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ...++.++..|+++-|.+|||.++++++-
T Consensus       251 S~~F~~Fvd~CLqKipqeRptse~ll~H~  279 (948)
T KOG0577|consen  251 SDYFRNFVDSCLQKIPQERPTSEELLKHR  279 (948)
T ss_pred             HHHHHHHHHHHHhhCcccCCcHHHHhhcc
Confidence            44577788889999999999999998764

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1.9e-34  Score=304.62  Aligned_cols=244  Identities=19%  Similarity=0.222  Sum_probs=183.4

Q ss_pred             hhhhccCCCCCceeeeecCC-Cc--EEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC------CeeE
Q 002875          612 ECEEAARPQSAAGCKAVLPT-GI--TVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------HQAY  679 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-g~--~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~  679 (872)
                      ..+.+|+|+||.||+|...+ +.  .||||.++..   ....+.+.+|++.+++++||||++++++|...      ...+
T Consensus         3 i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   82 (272)
T cd05075           3 LGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPV   82 (272)
T ss_pred             cccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcE
Confidence            56789999999999998644 33  6999988653   23356778899999999999999999988532      2468


Q ss_pred             EEEcccCCCChHHHhhC--------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          680 LLYDYLPNGNLSEKIRT--------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~--------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      +||||+++|+|.+++..        ..++.....++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        83 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  159 (272)
T cd05075          83 VILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFGLS  159 (272)
T ss_pred             EEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCCCcc
Confidence            99999999999998732        246788889999999999999998   9999999999999999999999999998


Q ss_pred             ccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccccc
Q 002875          752 YLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       752 ~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      +.......    ........+.+||......++.++|||||||++|||++ |+.||..... ..  .   ..........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-~~--~---~~~~~~~~~~  233 (272)
T cd05075         160 KKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN-SE--I---YDYLRQGNRL  233 (272)
T ss_pred             cccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCH-HH--H---HHHHHcCCCC
Confidence            76432211    11112233566777777778889999999999999999 5666643221 10  0   0011111101


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ...+   .....+.+++.+||+.||++|||++|+++.|+.+
T Consensus       234 ~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         234 KQPP---DCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             CCCC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            1111   2234577999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2e-34  Score=302.74  Aligned_cols=244  Identities=19%  Similarity=0.232  Sum_probs=184.5

Q ss_pred             hhccCCCCCceeeeecC----CCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEec-CCeeEEEEcccC
Q 002875          614 EEAARPQSAAGCKAVLP----TGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYN-RHQAYLLYDYLP  686 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lv~ey~~  686 (872)
                      +.+|+|+||.||+|...    ++..||+|++...  ....+.+.+|+.++++++||||++++++|.. ++..++||||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46899999999999852    3467999998542  2345677889999999999999999998864 556899999999


Q ss_pred             CCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-----
Q 002875          687 NGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-----  758 (872)
Q Consensus       687 ~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-----  758 (872)
                      +|+|.+++...   ..+.....++.|+++|++|||+.   +++||||||+||++++++.+|++|||+++......     
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  157 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVH  157 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCCcceeec
Confidence            99999998652   36777788999999999999998   99999999999999999999999999986432211     


Q ss_pred             -CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          759 -GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       759 -~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                       .....+...|.+||......++.++|||||||++|||+||+.|+.........     ..............   ..+.
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~  229 (262)
T cd05058         158 NHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDI-----TVYLLQGRRLLQPE---YCPD  229 (262)
T ss_pred             ccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHH-----HHHHhcCCCCCCCC---cCCH
Confidence             01111233466778777777888999999999999999977665433221110     00111111011011   1234


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .+.+++.+||+.+|++||+++|+++.|+.+.
T Consensus       230 ~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         230 PLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            6778999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.2e-34  Score=304.36  Aligned_cols=244  Identities=19%  Similarity=0.285  Sum_probs=185.8

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCe------e
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ------A  678 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~------~  678 (872)
                      ..+.+|+|+||.||+|+..    .++.||||+++...   ...+.+.+|++.+++++||||+++++++.+.+.      .
T Consensus         3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   82 (273)
T cd05035           3 LGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKP   82 (273)
T ss_pred             cccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCccc
Confidence            5678999999999999863    34789999987532   234578889999999999999999999876543      7


Q ss_pred             EEEEcccCCCChHHHhhC--------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT--------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~--------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                      ++||||+++|+|.+++..        ..++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+
T Consensus        83 ~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~  159 (273)
T cd05035          83 MVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADFGL  159 (273)
T ss_pred             EEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECCccc
Confidence            999999999999998843        347788889999999999999998   999999999999999999999999999


Q ss_pred             cccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccc
Q 002875          751 KYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENE  825 (872)
Q Consensus       751 ~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  825 (872)
                      ++........    .......+.+||......++.++|||||||++|||++ |..||.+... ..     ..........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~-~~-----~~~~~~~~~~  233 (273)
T cd05035         160 SKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN-HE-----IYDYLRHGNR  233 (273)
T ss_pred             eeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH-HH-----HHHHHHcCCC
Confidence            8754322111    1111223566777777778889999999999999999 6666543221 11     0111111110


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ...+   .....++.+++.+||+.||++|||+.|+++.|+.+
T Consensus       234 ~~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         234 LKQP---EDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             CCCC---cCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            1111   12345688999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=2.3e-34  Score=303.33  Aligned_cols=244  Identities=20%  Similarity=0.289  Sum_probs=191.1

Q ss_pred             hhhhccCCCCCceeeeecC-CC---cEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TG---ITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g---~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|+.. +|   ..||||.++...  ...+.+..|++++++++||||+++++++.+.+..|+||||+
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (268)
T cd05063           9 KQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYM   88 (268)
T ss_pred             EeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcC
Confidence            6789999999999999864 33   379999987542  23567888999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCc
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFP  762 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~  762 (872)
                      ++|+|.+++..   ..++.+...++.|++.|++|||+.   +++||||||+||++++++.+|++|||++...........
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~  165 (268)
T cd05063          89 ENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTY  165 (268)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccceecccccccce
Confidence            99999999864   357888999999999999999998   999999999999999999999999999865432211110


Q ss_pred             ----c-cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          763 ----A-KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       763 ----~-~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                          . ....|.+||+.....++.++|||||||++|||+| |..|+.......      ....+......+..   .+..
T Consensus       166 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~------~~~~i~~~~~~~~~---~~~~  236 (268)
T cd05063         166 TTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHE------VMKAINDGFRLPAP---MDCP  236 (268)
T ss_pred             eccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHH------HHHHHhcCCCCCCC---CCCC
Confidence                0 1123677888877778889999999999999998 888886432111      11111111101111   1223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+.+++.+||+.||++||++.++++.|+++
T Consensus       237 ~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         237 SAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             HHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            5678999999999999999999999999765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.8e-34  Score=307.68  Aligned_cols=246  Identities=20%  Similarity=0.250  Sum_probs=188.7

Q ss_pred             hhhhccCCCCCceeeeecC------CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.+|+|+||.||+|+..      .+..||+|.+....  ...+.+.+|+.++++++|||||+++++|...+..++|||
T Consensus         4 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (290)
T cd05045           4 LGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVE   83 (290)
T ss_pred             ccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEE
Confidence            6788999999999999742      34579999886543  234578889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC--------------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee
Q 002875          684 YLPNGNLSEKIRT--------------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF  737 (872)
Q Consensus       684 y~~~g~L~~~l~~--------------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill  737 (872)
                      |+++|+|.+++..                          ..++.+...++.|++.|++|||+.   +|+||||||+||++
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~dikp~nill  160 (290)
T cd05045          84 YAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLVHRDLAARNVLV  160 (290)
T ss_pred             ecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---CeehhhhhhheEEE
Confidence            9999999999853                          235777889999999999999998   99999999999999


Q ss_pred             CCCCCeeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcc
Q 002875          738 DENMEPHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKP  812 (872)
Q Consensus       738 ~~~~~~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~  812 (872)
                      ++++.+||+|||+++.......    ........|.+||......++.++|||||||++|||+| |..||.+... ..  
T Consensus       161 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~-~~--  237 (290)
T cd05045         161 AEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAP-ER--  237 (290)
T ss_pred             cCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCH-HH--
Confidence            9999999999999865322111    11112234667787777778889999999999999999 7777653221 11  


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ............   ..   .....++.+++..||+.+|++||+++|+++.|+++-.
T Consensus       238 ~~~~~~~~~~~~---~~---~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         238 LFNLLKTGYRME---RP---ENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             HHHHHhCCCCCC---CC---CCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHh
Confidence            001111111110   01   1223467889999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=9e-35  Score=316.12  Aligned_cols=244  Identities=15%  Similarity=0.064  Sum_probs=186.2

Q ss_pred             chhhhccCCCCCceeeeec----CCCcEEEEEEeeccc-----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          611 TECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGA-----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ...+.||+|+||.||++..    .+|+.||+|++....     ...+.+.+|+.+++++ +||||+++++++..++..++
T Consensus         3 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l   82 (332)
T cd05614           3 ELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHL   82 (332)
T ss_pred             eEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEE
Confidence            3778999999999999874    478999999986422     2244577889999999 48999999999999999999


Q ss_pred             EEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          681 LYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ||||+++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......
T Consensus        83 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~  159 (332)
T cd05614          83 ILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEE  159 (332)
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCCccccccC
Confidence            9999999999999865  357788889999999999999998   99999999999999999999999999987532221


Q ss_pred             C---CCcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          759 G---SFPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       759 ~---~~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      .   ....++..|++||...+. .++.++|||||||++|||+||+.||.........  ......+.... ...+.   .
T Consensus       160 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~--~~~~~~~~~~~-~~~~~---~  233 (332)
T cd05614         160 KERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQ--SEVSRRILKCD-PPFPS---F  233 (332)
T ss_pred             CCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCH--HHHHHHHhcCC-CCCCC---C
Confidence            1   112245567788877654 4678899999999999999999998643221110  00001111111 11111   1


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-----CHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      ....+.+++.+||+.||++||     +++|++++
T Consensus       234 ~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  267 (332)
T cd05614         234 IGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEH  267 (332)
T ss_pred             CCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcC
Confidence            234567889999999999999     77788765

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=2.7e-34  Score=301.08  Aligned_cols=242  Identities=16%  Similarity=0.217  Sum_probs=189.4

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|++|.||+|....+..||+|.+.......+.+.+|+.++++++|||++++++++. .+..++||||+++|+|.
T Consensus        10 ~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~   88 (260)
T cd05069          10 LDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMGKGSLL   88 (260)
T ss_pred             eeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCCCCCHH
Confidence            67889999999999999877778999998765555667888999999999999999999875 45689999999999999


Q ss_pred             HHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---ccc
Q 002875          692 EKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAK  764 (872)
Q Consensus       692 ~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~  764 (872)
                      ++++..    .++..+..++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++..........   ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  165 (260)
T cd05069          89 DFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKF  165 (260)
T ss_pred             HHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCcc
Confidence            999652    47888999999999999999998   99999999999999999999999999986543221111   112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||......++.++|||||||++|||+| |..|+.+.....   .   ...+.......   ........+.+++
T Consensus       166 ~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~---~~~~~~~~~~~---~~~~~~~~~~~li  236 (260)
T cd05069         166 PIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNRE---V---LEQVERGYRMP---CPQGCPESLHELM  236 (260)
T ss_pred             chhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---H---HHHHHcCCCCC---CCcccCHHHHHHH
Confidence            223667787777778889999999999999999 666665432111   0   01111110011   1112345678899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .+||+.||++||+++++.+.|+.
T Consensus       237 ~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         237 KLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             HHHccCCcccCcCHHHHHHHHhc
Confidence            99999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=312.95  Aligned_cols=241  Identities=21%  Similarity=0.239  Sum_probs=192.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc-chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG-ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~-~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      +.-++|+|+||.||.|.. ++...+|||-+... +...+-+-+||.+-++++|+|||+++|.|.+++++-|.||-.||||
T Consensus       579 ervVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGS  658 (1226)
T KOG4279|consen  579 ERVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGS  658 (1226)
T ss_pred             ceEEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCc
Confidence            345689999999999996 55668999998643 3445667899999999999999999999999999999999999999


Q ss_pred             hHHHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-CCCCeeEccccccccccccCCCC--
Q 002875          690 LSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHLAEFGFKYLTQLADGSF--  761 (872)
Q Consensus       690 L~~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-~~~~~ki~dfg~~~~~~~~~~~~--  761 (872)
                      |.+.++.+     -+..+.-.+.+||++||.|||..   .|||||||-.|||++ -.|.+||+|||-++.........  
T Consensus       659 LSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TET  735 (1226)
T KOG4279|consen  659 LSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTET  735 (1226)
T ss_pred             HHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhccCCccccc
Confidence            99999863     14556677899999999999999   999999999999997 56899999999887654433222  


Q ss_pred             cccccccCchhhhccc--CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAM--KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~--~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      -+++-.|++||++...  .|+..+|||||||.+.||+||++||.+-.+.+..+..   ..++..-    ++...+...++
T Consensus       736 FTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFk---VGmyKvH----P~iPeelsaea  808 (1226)
T KOG4279|consen  736 FTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFK---VGMYKVH----PPIPEELSAEA  808 (1226)
T ss_pred             cccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhh---hcceecC----CCCcHHHHHHH
Confidence            2244457788888653  5888899999999999999999999865544432211   1233222    33345667788


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      ..++++|+.+||.+||++++++.
T Consensus       809 k~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  809 KNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             HHHHHHHcCCCcccCccHHHhcc
Confidence            89999999999999999999874

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.5e-34  Score=305.62  Aligned_cols=250  Identities=18%  Similarity=0.265  Sum_probs=189.8

Q ss_pred             hhhhccCCCCCceeeeec-----CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-----PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-----~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~  682 (872)
                      ..+.+|+|+||.||.+..     .+++.||+|.++...  ...+.+.+|++++++++||||+++++++.+.  ...++||
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   87 (284)
T cd05079           8 RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIM   87 (284)
T ss_pred             hceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEE
Confidence            788899999999999873     468899999986432  2345788999999999999999999999875  5689999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+++|+|.+++..   ..++.++..++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||+++.......
T Consensus        88 e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~  164 (284)
T cd05079          88 EFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKE  164 (284)
T ss_pred             EccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCccccccccCcc
Confidence            99999999999864   358899999999999999999999   999999999999999999999999999875432211


Q ss_pred             C-----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc---------cccccccccccc
Q 002875          760 S-----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI---------DGLLGEMYNENE  825 (872)
Q Consensus       760 ~-----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~---------~~~~~~~~~~~~  825 (872)
                      .     ...+...|.+||+..+..++.++|||||||++|||+|++.|............         ............
T Consensus       165 ~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (284)
T cd05079         165 YYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKR  244 (284)
T ss_pred             ceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCcc
Confidence            1     11223345677877777788899999999999999998766432211000000         000000000000


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .   +........+.+++.+||+.||++|||++|+++.++++
T Consensus       245 ~---~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         245 L---PRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             C---CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            0   11112345688999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=2.2e-34  Score=304.12  Aligned_cols=245  Identities=18%  Similarity=0.223  Sum_probs=187.6

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecC------Ce
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR------HQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~------~~  677 (872)
                      ..|.  ..+.+|+|+||.||+|.. .+++.||+|.+.........+..|+.++.++ +||||++++++|...      ..
T Consensus         6 ~~y~--~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (272)
T cd06637           6 GIFE--LVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ   83 (272)
T ss_pred             hhhh--HHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcE
Confidence            3355  778899999999999985 5688999999976555566778899999988 699999999998753      46


Q ss_pred             eEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      .|+||||+++|+|.+++..    ..++.....++.|++.|++|||+.   +|+|||+||+||++++++.+||+|||++..
T Consensus        84 ~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Dfg~~~~  160 (272)
T cd06637          84 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  160 (272)
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccCCCcee
Confidence            8999999999999999875    247788889999999999999998   999999999999999999999999999875


Q ss_pred             ccccCCC--CcccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc
Q 002875          754 TQLADGS--FPAKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       754 ~~~~~~~--~~~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      .......  ...+...|.+||++.     ...++.++|||||||++|||+||+.||.+.........   ........ .
T Consensus       161 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~---~~~~~~~~-~  236 (272)
T cd06637         161 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFL---IPRNPAPR-L  236 (272)
T ss_pred             cccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHH---HhcCCCCC-C
Confidence            4322111  122344577788764     23567789999999999999999999864332111000   00000000 0


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ..   ......+.+++.+||..||.+|||++|++++
T Consensus       237 -~~---~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  269 (272)
T cd06637         237 -KS---KKWSKKFQSFIESCLVKNHSQRPTTEQLMKH  269 (272)
T ss_pred             -CC---CCcCHHHHHHHHHHcCCChhhCCCHHHHhhC
Confidence             01   1223467889999999999999999999864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=3.1e-34  Score=308.18  Aligned_cols=249  Identities=17%  Similarity=0.187  Sum_probs=189.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||++.. .+|..||+|.+.....  ..+.+.+|++++++++||||++++++|.+++..++||||+++|
T Consensus         5 ~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~   84 (308)
T cd06615           5 KLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGG   84 (308)
T ss_pred             EEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCC
Confidence            778899999999999985 5788999999865322  3456788999999999999999999999999999999999999


Q ss_pred             ChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccc
Q 002875          689 NLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA  766 (872)
Q Consensus       689 ~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~  766 (872)
                      +|.++++..  .++.....++.|+++||+|||+.+  +++||||||+||+++.++.+|++|||++............+..
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  162 (308)
T cd06615          85 SLDQVLKKAGRIPENILGKISIAVLRGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTR  162 (308)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC--CEEECCCChHHEEEecCCcEEEccCCCcccccccccccCCCCc
Confidence            999999753  467788899999999999999732  8999999999999999999999999998654322222222344


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccc-cc---------------------------
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGL-LG---------------------------  818 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~-~~---------------------------  818 (872)
                      .|.+||...+..++.++|||||||++|||+||+.||.............. ..                           
T Consensus       163 ~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (308)
T cd06615         163 SYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFEL  242 (308)
T ss_pred             CccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHH
Confidence            56778887777788899999999999999999999864321110000000 00                           


Q ss_pred             --ccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          819 --EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       819 --~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                        .......+..+.  .....++.+++.+||..||++|||++|++++-
T Consensus       243 ~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  288 (308)
T cd06615         243 LDYIVNEPPPKLPS--GAFSDEFQDFVDKCLKKNPKERADLKELTKHP  288 (308)
T ss_pred             HHHHhcCCCccCcC--cccCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence              000000000000  01234578999999999999999999998764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=4.6e-34  Score=298.69  Aligned_cols=241  Identities=20%  Similarity=0.252  Sum_probs=187.9

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEe-cCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCY-NRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~-~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.+|+|+||.||+|.. .|..||+|.++... ..+.+.+|+.++++++|+||+++++++. +++..++||||+++|+|
T Consensus        10 ~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L   87 (256)
T cd05082          10 LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL   87 (256)
T ss_pred             eeeeecccCCCeEEEEEE-cCCcEEEEEeCCCc-hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcH
Confidence            778999999999999976 48889999986433 3456888999999999999999999865 45678999999999999


Q ss_pred             HHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccc
Q 002875          691 SEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA  766 (872)
Q Consensus       691 ~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~  766 (872)
                      .++++..    .++.....++.|++.|++|||+.   +|+||||||+||++++++.+|++|||+++......... ....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~  163 (256)
T cd05082          88 VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG-KLPV  163 (256)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceeccccCCCC-ccce
Confidence            9998752    46788899999999999999998   99999999999999999999999999987543322211 1223


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .|.+||+.....++.++|||||||++|||+| |+.|+..... ..  ............   ..   ......+.+++.+
T Consensus       164 ~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~-~~--~~~~~~~~~~~~---~~---~~~~~~~~~li~~  234 (256)
T cd05082         164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-KD--VVPRVEKGYKMD---AP---DGCPPVVYDVMKQ  234 (256)
T ss_pred             eecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCH-HH--HHHHHhcCCCCC---CC---CCCCHHHHHHHHH
Confidence            4778888877788889999999999999998 7776653211 10  000000000000   01   1223467789999


Q ss_pred             cccCCCCCCCCHHHHHHHHccc
Q 002875          846 CTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      |++.||++|||++++++.|+.+
T Consensus       235 ~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         235 CWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             HhcCChhhCcCHHHHHHHHhcC
Confidence            9999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1e-34  Score=314.14  Aligned_cols=239  Identities=16%  Similarity=0.129  Sum_probs=185.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCC-CceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHK-NLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~-niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|.. .+++.||||++....    ...+.+..|+++++.++|+ +|+++++++.+.+..|+||||+
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   83 (324)
T cd05587           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYV   83 (324)
T ss_pred             EEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCC
Confidence            678899999999999985 467899999997532    2345667788888888764 6888999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      ++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  ...
T Consensus        84 ~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~  160 (324)
T cd05587          84 NGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRT  160 (324)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceee
Confidence            99999999865  347788889999999999999998   99999999999999999999999999986432111  112


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+
T Consensus       161 ~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~  230 (324)
T cd05587         161 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE------LFQSIMEHN-VSYPK---SLSKEAVS  230 (324)
T ss_pred             ecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHHH
Confidence            224566888998888888899999999999999999999986433111      111111111 11111   12345778


Q ss_pred             HHHHcccCCCCCCCCH-----HHHHHH
Q 002875          842 VALLCTRSTPSDRPSM-----EEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~-----~~v~~~  863 (872)
                      ++.+|+..||++||+.     +++.++
T Consensus       231 li~~~l~~~P~~R~~~~~~~~~~~~~h  257 (324)
T cd05587         231 ICKGLLTKHPAKRLGCGPTGERDIREH  257 (324)
T ss_pred             HHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            9999999999999976     566543

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.9e-34  Score=302.52  Aligned_cols=243  Identities=20%  Similarity=0.211  Sum_probs=177.8

Q ss_pred             hccCCCCCceeeeecC---CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          615 EAARPQSAAGCKAVLP---TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~---~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      .||+|+||.||+|...   ++..+|+|.++...  .....+.+|+.++++++||||+++++++.+....++||||+++|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            5899999999999854   34679999987543  234567889999999999999999999999999999999999999


Q ss_pred             hHHHhhCC-------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          690 LSEKIRTK-------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       690 L~~~l~~~-------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      |.++++..       .++.....++.|++.|++|||+.   +++||||||+||+++.++.+|++|||+++.......   
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~  158 (269)
T cd05087          82 LKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVT  158 (269)
T ss_pred             HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCccccccccCcceeec
Confidence            99998642       24566778999999999999998   999999999999999999999999999864322111   


Q ss_pred             -CCcccccccCchhhhccc-------CCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          760 -SFPAKIAWTESGEFYNAM-------KEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~~-------~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                       ....+...|.+||+....       .++.++|||||||++|||+| |..||............  .......  ...+.
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~--~~~~~~~--~~~~~  234 (269)
T cd05087         159 PDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYT--VREQQLK--LPKPR  234 (269)
T ss_pred             CCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHH--hhcccCC--CCCCc
Confidence             011122335677776432       35778999999999999997 88888643321110000  0000000  00000


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ........+.+++..|| .+|++|||++||++.|+
T Consensus       235 ~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         235 LKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             cCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            00112234667888898 58999999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=9.2e-35  Score=322.08  Aligned_cols=242  Identities=14%  Similarity=0.132  Sum_probs=182.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+++.||||++....    ...+.+.+|+.++++++|||||++++++.+++..|+|||||+
T Consensus         5 ~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~   84 (382)
T cd05625           5 KIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIP   84 (382)
T ss_pred             EEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCC
Confidence            788999999999999985 678899999997532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC------
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------  758 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~------  758 (872)
                      +|+|.+++.+.  .+......++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++.......      
T Consensus        85 gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~  161 (382)
T cd05625          85 GGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQ  161 (382)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccc
Confidence            99999998753  45667778999999999999999   99999999999999999999999999974221000      


Q ss_pred             -------------------------------------------CCCcccccccCchhhhcccCCcccccchhHHHHHHHH
Q 002875          759 -------------------------------------------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEI  795 (872)
Q Consensus       759 -------------------------------------------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el  795 (872)
                                                                 .....++..|++||+..+..++.++||||+||++|||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~el  241 (382)
T cd05625         162 SGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM  241 (382)
T ss_pred             cccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHH
Confidence                                                       0011245568888988888889999999999999999


Q ss_pred             HcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCC---HHHHHHH
Q 002875          796 LTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS---MEEALKL  863 (872)
Q Consensus       796 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt---~~~v~~~  863 (872)
                      +||+.||.........  .... ........+   .......++.+++.+++ .+|++|++   ++|++++
T Consensus       242 ltG~~Pf~~~~~~~~~--~~i~-~~~~~~~~p---~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~h  305 (382)
T cd05625         242 LVGQPPFLAQTPLETQ--MKVI-NWQTSLHIP---PQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAH  305 (382)
T ss_pred             HhCCCCCCCCCHHHHH--HHHH-ccCCCcCCC---CcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcC
Confidence            9999999754321110  0000 000000010   01112234555555554 49999987   8887754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3.7e-34  Score=300.14  Aligned_cols=235  Identities=19%  Similarity=0.239  Sum_probs=179.9

Q ss_pred             hhccCCCCCceeeeecCCC-----------cEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          614 EEAARPQSAAGCKAVLPTG-----------ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~g-----------~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      +.+|+|+||.||+|...+.           ..||+|.+.........+.+|+.++++++||||++++++|.. +..++||
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~   79 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVE   79 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEE
Confidence            4689999999999997543           257888876544446778899999999999999999999988 7789999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-------CeeEccccccc
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-------EPHLAEFGFKY  752 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-------~~ki~dfg~~~  752 (872)
                      ||+++|+|.+++..   ..++..+..++.|++.||+|||+.   +|+||||||+||+++.++       .+|++|||++.
T Consensus        80 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~  156 (259)
T cd05037          80 EYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPI  156 (259)
T ss_pred             EcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeCCCCccc
Confidence            99999999999875   357888899999999999999998   999999999999999887       79999999987


Q ss_pred             cccccCCCCcccccccCchhhhccc--CCcccccchhHHHHHHHHHcCCC-CCCCCCCCCCccccccccccccccccCCC
Q 002875          753 LTQLADGSFPAKIAWTESGEFYNAM--KEEMYMDVYGFGEIILEILTNGR-LTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~Dv~S~Gvil~el~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      ......  ...+...|.+||++...  .++.++|||||||++|||++|+. |+.... .....  ....   .....+.+
T Consensus       157 ~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~-~~~~~--~~~~---~~~~~~~~  228 (259)
T cd05037         157 TVLSRE--ERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS-SSEKE--RFYQ---DQHRLPMP  228 (259)
T ss_pred             cccccc--ccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC-chhHH--HHHh---cCCCCCCC
Confidence            543211  11122235677877655  67888999999999999999644 443321 11110  0000   01101111


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      .     ...+.+++.+||..+|.+|||+.|+++.|.
T Consensus       229 ~-----~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         229 D-----CAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             C-----chHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            1     156789999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=9.6e-35  Score=314.14  Aligned_cols=232  Identities=15%  Similarity=0.104  Sum_probs=177.5

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHH-HHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEF-ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e-~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|+. .+|+.||||++....    .....+.+| ..+++.++|||||++++++.+.+..|+||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999986 568899999997532    122333344 4467889999999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      |+|.+++...  ....+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFC  157 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCcccccc
Confidence            9999988653  46677788999999999999998   999999999999999999999999999864321111  1122


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|.+||......++.++||||+||++|||+||..||.......      ....+.... ...++   .....+.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~li  227 (321)
T cd05603         158 GTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQ------MYDNILHKP-LQLPG---GKTVAACDLL  227 (321)
T ss_pred             CCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHH------HHHHHhcCC-CCCCC---CCCHHHHHHH
Confidence            4556788898887788899999999999999999999987543111      111111111 11111   1224577889


Q ss_pred             HHcccCCCCCCCCHH
Q 002875          844 LLCTRSTPSDRPSME  858 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~  858 (872)
                      .+|++.||++||++.
T Consensus       228 ~~~l~~~p~~R~~~~  242 (321)
T cd05603         228 VGLLHKDQRRRLGAK  242 (321)
T ss_pred             HHHccCCHhhcCCCC
Confidence            999999999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=4.3e-34  Score=305.97  Aligned_cols=248  Identities=20%  Similarity=0.229  Sum_probs=187.1

Q ss_pred             hhhhccCCCCCceeeeecC-----------------CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLP-----------------TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFC  672 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-----------------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~  672 (872)
                      ..+.+|+|+||.||+|...                 .+..||+|.+....  ...+.+.+|++++++++||||++++++|
T Consensus         9 ~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~   88 (296)
T cd05051           9 FVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVC   88 (296)
T ss_pred             ccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            7899999999999998753                 23568999987543  3456788999999999999999999999


Q ss_pred             ecCCeeEEEEcccCCCChHHHhhCC-------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC
Q 002875          673 YNRHQAYLLYDYLPNGNLSEKIRTK-------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE  739 (872)
Q Consensus       673 ~~~~~~~lv~ey~~~g~L~~~l~~~-------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~  739 (872)
                      ..++..++||||+++|+|.+++...             .++.....++.|++.||+|||+.   +|+||||||+||+++.
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~dlkp~Nili~~  165 (296)
T cd05051          89 TVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLATRNCLVGK  165 (296)
T ss_pred             ecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---CccccccchhceeecC
Confidence            9999999999999999999998652             46788899999999999999998   9999999999999999


Q ss_pred             CCCeeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc--CCCCCCCCCCCCCccc
Q 002875          740 NMEPHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT--NGRLTNAGSSLQNKPI  813 (872)
Q Consensus       740 ~~~~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t--g~~p~~~~~~~~~~~~  813 (872)
                      ++.++++|||+++.......    ........|++||......++.++|||||||++|||+|  |..|+.......  ..
T Consensus       166 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~--~~  243 (296)
T cd05051         166 NYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQ--VI  243 (296)
T ss_pred             CCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHH--HH
Confidence            99999999999865322211    11112234677888777778899999999999999998  445554322111  00


Q ss_pred             cccccccccc-cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          814 DGLLGEMYNE-NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       814 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      . ........ ......+.......++.+++.+|++.||++|||+.|+++.|+
T Consensus       244 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         244 E-NAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             H-HHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            0 00011000 000000011112356889999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=4.4e-34  Score=302.63  Aligned_cols=243  Identities=18%  Similarity=0.260  Sum_probs=184.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCc----EEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGI----TVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~----~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.||+|+||.||+|.. .+|.    .||+|.+....  ...+.+..|+..+++++|||||+++|++.. ...++|+||
T Consensus        11 ~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~~~~i~e~   89 (279)
T cd05111          11 KLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-ASLQLVTQL   89 (279)
T ss_pred             eccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-CccEEEEEe
Confidence            778999999999999985 4454    47788775432  223567778888999999999999999864 457899999


Q ss_pred             cCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          685 LPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       685 ~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      +++|+|.+++..   ..++.....++.|++.||+|||+.   +++||||||+||+++.++.+|++|||+++........ 
T Consensus        90 ~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~  166 (279)
T cd05111          90 SPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKY  166 (279)
T ss_pred             CCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCccceeccCCCccc
Confidence            999999999964   347888999999999999999998   9999999999999999999999999998754322111 


Q ss_pred             ---CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccc-cCCCCchHHH
Q 002875          761 ---FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENE-VGSSSSLQDE  835 (872)
Q Consensus       761 ---~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  835 (872)
                         ...+...|.+||...+..++.++|||||||++||++| |..|+.+.....   .    .+...... ...+..   .
T Consensus       167 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~---~----~~~~~~~~~~~~~~~---~  236 (279)
T cd05111         167 FYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHE---V----PDLLEKGERLAQPQI---C  236 (279)
T ss_pred             ccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH---H----HHHHHCCCcCCCCCC---C
Confidence               1112334677888777788999999999999999998 777775432110   0    01111100 010111   1


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ...+.+++.+||..||++|||+.|+++.|..+.
T Consensus       237 ~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~  269 (279)
T cd05111         237 TIDVYMVMVKCWMIDENVRPTFKELANEFTRMA  269 (279)
T ss_pred             CHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence            234677889999999999999999999998764

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=3.8e-34  Score=299.50  Aligned_cols=240  Identities=15%  Similarity=0.167  Sum_probs=191.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|++|.||+|+. .+|+.||+|.+...   ....+.+.+|++++++++||||+++++++.+++..|+||||+++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd08529           4 ILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAEN   83 (256)
T ss_pred             EeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCC
Confidence            668899999999999986 57899999998642   33466788899999999999999999999999999999999999


Q ss_pred             CChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--C
Q 002875          688 GNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--F  761 (872)
Q Consensus       688 g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~  761 (872)
                      ++|.++++.    ..++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+|++|||+++........  .
T Consensus        84 ~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~  160 (256)
T cd08529          84 GDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANT  160 (256)
T ss_pred             CcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhc
Confidence            999999865    346778889999999999999998   9999999999999999999999999998754332211  1


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..+..+|.+||+.....++.++|||||||++|||+||+.||.......  .    ........ .  .+........+.+
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~----~~~~~~~~-~--~~~~~~~~~~~~~  231 (256)
T cd08529         161 IVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGA--L----ILKIIRGV-F--PPVSQMYSQQLAQ  231 (256)
T ss_pred             cccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH--H----HHHHHcCC-C--CCCccccCHHHHH
Confidence            124456788898887778899999999999999999999986443110  0    00111111 0  0001123356789


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+||+.+|++||++.|++++
T Consensus       232 ~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         232 LIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             HHHHHccCCcccCcCHHHHhhC
Confidence            9999999999999999999874

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=4.6e-34  Score=302.74  Aligned_cols=243  Identities=16%  Similarity=0.189  Sum_probs=188.1

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|+||.||++..      .++..||+|.+.... ...+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   88 (280)
T cd05092           9 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEY   88 (280)
T ss_pred             eccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEec
Confidence            678899999999999863      356789999986533 3356789999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhCC-----------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          685 LPNGNLSEKIRTK-----------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       685 ~~~g~L~~~l~~~-----------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      +++|+|.+++...                 .++.++..++.|++.|++|||+.   +|+||||||+||++++++.+||+|
T Consensus        89 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~~~~~kL~d  165 (280)
T cd05092          89 MRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQGLVVKIGD  165 (280)
T ss_pred             CCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcCCCCEEECC
Confidence            9999999998642                 46788899999999999999998   999999999999999999999999


Q ss_pred             ccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccc
Q 002875          748 FGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYN  822 (872)
Q Consensus       748 fg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  822 (872)
                      ||++.........    .......|.+||......++.++|||||||++|||+| |..||.......      .......
T Consensus       166 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~------~~~~~~~  239 (280)
T cd05092         166 FGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTE------AIECITQ  239 (280)
T ss_pred             CCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHH------HHHHHHc
Confidence            9998644221110    1111233677888777788999999999999999999 666665322111      0001111


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      ......+.   .....+.+++.+||+.||++||+++|+.+.|++
T Consensus       240 ~~~~~~~~---~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         240 GRELERPR---TCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             CccCCCCC---CCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            11011011   123457789999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=2.7e-34  Score=307.62  Aligned_cols=248  Identities=17%  Similarity=0.207  Sum_probs=192.0

Q ss_pred             hcCcchhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCe
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQ  677 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~  677 (872)
                      .|.  ..+.+|+|+||.||+|..      .++..||||.++...  ...+.+.+|+++++++ +||||++++++|...+.
T Consensus        36 ~~~--~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          36 NLS--FGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HeE--EcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            355  788999999999999863      346689999987542  2345788999999999 79999999999999999


Q ss_pred             eEEEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      .|+||||+++|+|.++++..    .++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+|++|||+++.
T Consensus       114 ~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~  190 (302)
T cd05055         114 ILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGLARD  190 (302)
T ss_pred             eEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCCccccc
Confidence            99999999999999999752    57899999999999999999998   999999999999999999999999999875


Q ss_pred             ccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCC
Q 002875          754 TQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       754 ~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      .......    .......|.+||......++.++||||+||++|||+| |..|+........      ..........  
T Consensus       191 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~------~~~~~~~~~~--  262 (302)
T cd05055         191 IMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSK------FYKLIKEGYR--  262 (302)
T ss_pred             ccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHH------HHHHHHcCCc--
Confidence            4322111    1112234678888777778889999999999999999 7777654321110      0001100000  


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .........++.+++.+|++.+|++|||+.|+++.|+++
T Consensus       263 ~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         263 MAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            000011234678999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=4.2e-34  Score=302.62  Aligned_cols=242  Identities=17%  Similarity=0.190  Sum_probs=186.5

Q ss_pred             hhhhccCCCCCceeeeecC------CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.+|+|++|.||+|...      ++..||+|.+....  .....+.+|+.++++++||||+++++++.+.+..++|||
T Consensus        10 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   89 (277)
T cd05036          10 LLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLE   89 (277)
T ss_pred             eeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEe
Confidence            7789999999999999864      46789999886432  234568889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC---------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC---CeeEcccccc
Q 002875          684 YLPNGNLSEKIRTK---------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM---EPHLAEFGFK  751 (872)
Q Consensus       684 y~~~g~L~~~l~~~---------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~---~~ki~dfg~~  751 (872)
                      |+++|+|.+++...         .++.+...++.||+.|++|||+.   +++||||||+||+++.++   .+|++|||++
T Consensus        90 ~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~  166 (277)
T cd05036          90 LMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVAKIADFGMA  166 (277)
T ss_pred             cCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcceEeccCccc
Confidence            99999999998642         47888899999999999999999   999999999999998654   5999999998


Q ss_pred             ccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccccc
Q 002875          752 YLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       752 ~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      +........    .......|.+||+.....++.++|||||||++|||+| |..||....... .  ...   .......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~-~--~~~---~~~~~~~  240 (277)
T cd05036         167 RDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE-V--MEF---VTGGGRL  240 (277)
T ss_pred             cccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH-H--HHH---HHcCCcC
Confidence            754221110    1111223677888877788999999999999999997 777765432111 0  000   0000000


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ..+   ......+.+++.+|++.+|++|||++||+++|+
T Consensus       241 ~~~---~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         241 DPP---KGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             CCC---CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            001   112346778999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=4.7e-34  Score=305.13  Aligned_cols=249  Identities=16%  Similarity=0.225  Sum_probs=195.5

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      .+..+.|.  ..+.+|+|+||.||+|.. .+|+.||+|.+.... ...+.+.+|+.+++.++||||+++++++..++..|
T Consensus        15 ~~~~~~y~--~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~   92 (297)
T cd06656          15 GDPKKKYT--RFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELW   92 (297)
T ss_pred             CChhhhce--eeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEE
Confidence            33445566  888999999999999985 689999999997543 23566788999999999999999999999999999


Q ss_pred             EEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          680 LLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      +||||+++|+|.+++.+ ..++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++.......
T Consensus        93 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~  169 (297)
T cd06656          93 VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  169 (297)
T ss_pred             EeecccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEccCCc
Confidence            99999999999999865 457888899999999999999998   99999999999999999999999999986543221


Q ss_pred             CC--CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          759 GS--FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       759 ~~--~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      ..  ...+..+|.+||......++.++|||||||++|||+||..||.............     ....+.  ........
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~  242 (297)
T cd06656         170 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIA-----TNGTPE--LQNPERLS  242 (297)
T ss_pred             cCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeec-----cCCCCC--CCCccccC
Confidence            11  1224455778888877778889999999999999999999986543221110000     000000  01111223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      ..+.+++.+||+.||++||+++++++
T Consensus       243 ~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         243 AVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhc
Confidence            45678899999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.4e-35  Score=321.40  Aligned_cols=242  Identities=13%  Similarity=0.057  Sum_probs=184.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||++.. .+|+.||||++....    ...+.+.+|++++++++|||||++++++.+++..|+||||++
T Consensus         5 ~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~   84 (377)
T cd05629           5 TVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLP   84 (377)
T ss_pred             EeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCC
Confidence            778999999999999975 688999999986532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC------
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------  758 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~------  758 (872)
                      +|+|.+++..  ..+......++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||+++......      
T Consensus        85 gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~  161 (377)
T cd05629          85 GGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQ  161 (377)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeeccccccccccccccccc
Confidence            9999999865  346677788999999999999999   99999999999999999999999999985321100      


Q ss_pred             --------C-----------------------------------CCcccccccCchhhhcccCCcccccchhHHHHHHHH
Q 002875          759 --------G-----------------------------------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEI  795 (872)
Q Consensus       759 --------~-----------------------------------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el  795 (872)
                              .                                   ....++..|.+||++....++.++||||+||++|||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~el  241 (377)
T cd05629         162 KLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFEC  241 (377)
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhh
Confidence                    0                                   001245568888988888889999999999999999


Q ss_pred             HcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCC---CCCHHHHHHH
Q 002875          796 LTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSD---RPSMEEALKL  863 (872)
Q Consensus       796 ~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~---Rpt~~~v~~~  863 (872)
                      +||..||........  ... .......  .. .+.......++.+++.+|+. +|.+   |+++.|++++
T Consensus       242 ltG~~Pf~~~~~~~~--~~~-i~~~~~~--~~-~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         242 LIGWPPFCSENSHET--YRK-IINWRET--LY-FPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             hcCCCCCCCCCHHHH--HHH-HHccCCc--cC-CCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence            999999875432110  000 0000000  00 00101122456678888887 6665   4699998876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=2.6e-34  Score=307.14  Aligned_cols=244  Identities=22%  Similarity=0.260  Sum_probs=188.9

Q ss_pred             hhhhccCCCCCceeeeecC------CCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.+|+|+||.||+|...      ....||+|.+....  .....+.+|++++.++ +||||++++++|..++..++||
T Consensus        16 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~   95 (293)
T cd05053          16 LGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVV   95 (293)
T ss_pred             EeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEE
Confidence            7789999999999999752      34689999987532  2345678899999999 7999999999999999999999


Q ss_pred             cccCCCChHHHhhC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCee
Q 002875          683 DYLPNGNLSEKIRT------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH  744 (872)
Q Consensus       683 ey~~~g~L~~~l~~------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~k  744 (872)
                      ||+++|+|.++++.                  ..++.....++.|++.|++|||+.   +|+||||||+||++++++.+|
T Consensus        96 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~Nil~~~~~~~k  172 (293)
T cd05053          96 EYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNVLVTEDHVMK  172 (293)
T ss_pred             EeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CccccccceeeEEEcCCCeEE
Confidence            99999999999853                  346788899999999999999998   999999999999999999999


Q ss_pred             EccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccc
Q 002875          745 LAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGE  819 (872)
Q Consensus       745 i~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~  819 (872)
                      ++|||+++........    .......|.+||......++.++|||||||++|||++ |..|+.......      ....
T Consensus       173 L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~------~~~~  246 (293)
T cd05053         173 IADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE------LFKL  246 (293)
T ss_pred             eCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHH------HHHH
Confidence            9999998754322111    1111233677888777788899999999999999998 777765332111      0000


Q ss_pred             cccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          820 MYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .........+   ......+.+++.+||..||++||||+|+++.|+++
T Consensus       247 ~~~~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~  291 (293)
T cd05053         247 LKEGYRMEKP---QNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM  291 (293)
T ss_pred             HHcCCcCCCC---CCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence            1011000001   12234678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.9e-34  Score=305.37  Aligned_cols=252  Identities=20%  Similarity=0.288  Sum_probs=192.4

Q ss_pred             hhhhccCCCCCceeeeec-----CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEec--CCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-----PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-----~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lv~  682 (872)
                      ..+.+|+|+||.||+|+.     .+++.||||.++....  ..+.+.+|++.+++++||||+++++++..  ....++||
T Consensus         8 ~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   87 (284)
T cd05038           8 FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIM   87 (284)
T ss_pred             hheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEE
Confidence            678899999999999984     3578999999976544  36788999999999999999999999987  55789999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+++|+|.+++..   ..++.+...++.|++.||+|||+.   +++||||||+||+++.++.+|++|||.+........
T Consensus        88 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  164 (284)
T cd05038          88 EYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKD  164 (284)
T ss_pred             ecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccccccccccCCc
Confidence            99999999999965   358888999999999999999998   999999999999999999999999999876542211


Q ss_pred             CC-----cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc--------ccccccccccccccc
Q 002875          760 SF-----PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK--------PIDGLLGEMYNENEV  826 (872)
Q Consensus       760 ~~-----~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~  826 (872)
                      ..     ......+.+||......++.++|||||||++|||+||+.|+.........        .......+.......
T Consensus       165 ~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (284)
T cd05038         165 YYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGER  244 (284)
T ss_pred             ceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCc
Confidence            11     11122345667666667888999999999999999999887643221100        000000001111000


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                        .+.......++.+++.+||+.+|++||||.|++++|++++
T Consensus       245 --~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         245 --LPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             --CCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhcC
Confidence              0001122356889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6e-34  Score=297.98  Aligned_cols=242  Identities=18%  Similarity=0.252  Sum_probs=186.6

Q ss_pred             hhccCCCCCceeeeec--C--CCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL--P--TGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~--~--~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ++||+|+||.||+|+.  .  ++..||+|.+.....  ..+.+.+|+.++++++|||||++++++.. +..++||||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-CceEEEEEeCCC
Confidence            3689999999999974  2  237899999976543  45678889999999999999999998864 567999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCc---
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFP---  762 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~---  762 (872)
                      |+|.+++..  ..++..+..++.|++.|++|||..   +++||||||+||+++.++.+|++|||+++..........   
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~  156 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATT  156 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecCCccccccc
Confidence            999999975  357888899999999999999998   999999999999999999999999999875433221111   


Q ss_pred             c--cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          763 A--KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       763 ~--~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      .  ....|.+||......++.++|||||||++|||+| |..||.......   ........   .....+   ......+
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~---~~~~~~~~---~~~~~~---~~~~~~l  227 (257)
T cd05060         157 AGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAE---VIAMLESG---ERLPRP---EECPQEI  227 (257)
T ss_pred             CccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHH---HHHHHHcC---CcCCCC---CCCCHHH
Confidence            1  1123667787777778899999999999999998 777765432111   00001010   000111   1123467


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .+++.+||..+|++||++.++.+.|+++.
T Consensus       228 ~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         228 YSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             HHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            79999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.2e-34  Score=313.81  Aligned_cols=233  Identities=16%  Similarity=0.119  Sum_probs=178.2

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhH-HHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRI-KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~-~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|.. .+++.||+|++....    ... +.+.++..+++.++||||+++++++.+.+..|+||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            3689999999999986 467889999997532    112 2333444456789999999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++...  ....+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~  157 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFC  157 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCccccc
Confidence            9999998753  35666778999999999999999   99999999999999999999999999986432211  11222


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|++||+..+..++.++||||+||++|||+||+.||.......      ....+.... ....+   .....+.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~------~~~~i~~~~-~~~~~---~~~~~~~~li  227 (325)
T cd05602         158 GTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE------MYDNILNKP-LQLKP---NITNSARHLL  227 (325)
T ss_pred             CCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHH------HHHHHHhCC-cCCCC---CCCHHHHHHH
Confidence            4556788898888888899999999999999999999987543211      111111111 11111   2234577888


Q ss_pred             HHcccCCCCCCCCHHH
Q 002875          844 LLCTRSTPSDRPSMEE  859 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~  859 (872)
                      .+|++.||.+||++.+
T Consensus       228 ~~~l~~~p~~R~~~~~  243 (325)
T cd05602         228 EGLLQKDRTKRLGAKD  243 (325)
T ss_pred             HHHcccCHHHCCCCCC
Confidence            9999999999998764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=1.6e-34  Score=312.59  Aligned_cols=238  Identities=16%  Similarity=0.132  Sum_probs=184.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|.. .+++.||||.++....    ..+.+..|..++..+ +||+|+++++++.+.+..|+||||+
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~   83 (323)
T cd05616           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYV   83 (323)
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCC
Confidence            678899999999999985 4678999999975321    233455667777766 5899999999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      ++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++......  ...
T Consensus        84 ~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~  160 (323)
T cd05616          84 NGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKT  160 (323)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCcccc
Confidence            99999999865  457788899999999999999998   99999999999999999999999999986432111  112


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|++||+.....++.++|||||||++|||+||+.||.......      ....+.... ...+.   ....++.+
T Consensus       161 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~~  230 (323)
T cd05616         161 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE------LFQSIMEHN-VAYPK---SMSKEAVA  230 (323)
T ss_pred             CCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHH------HHHHHHhCC-CCCCC---cCCHHHHH
Confidence            234566888999888889999999999999999999999987543211      111111111 11111   22346778


Q ss_pred             HHHHcccCCCCCCCCH-----HHHHH
Q 002875          842 VALLCTRSTPSDRPSM-----EEALK  862 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~-----~~v~~  862 (872)
                      ++.+|++.||++|+++     +++.+
T Consensus       231 li~~~l~~~p~~R~~~~~~~~~~i~~  256 (323)
T cd05616         231 ICKGLMTKHPGKRLGCGPEGERDIKE  256 (323)
T ss_pred             HHHHHcccCHHhcCCCCCCCHHHHhc
Confidence            9999999999999984     56554

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=6.3e-34  Score=298.32  Aligned_cols=236  Identities=17%  Similarity=0.224  Sum_probs=176.8

Q ss_pred             hhccCCCCCceeeeecCC-------------CcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          614 EEAARPQSAAGCKAVLPT-------------GITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~-------------g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      +.+|+|+||.||+|+..+             +..||+|.+..... ....+.+|+.+++.++|||||++++++.++...+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            368999999999998532             23689998765332 3456788899999999999999999999999999


Q ss_pred             EEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC-------eeEcccc
Q 002875          680 LLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME-------PHLAEFG  749 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~-------~ki~dfg  749 (872)
                      +||||+++|+|..++..   ..++.....++.|+++|++|||+.   +|+||||||+||+++.++.       +|++|||
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g  157 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIKLSDPG  157 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeEeCCCC
Confidence            99999999999998864   357888899999999999999998   9999999999999987654       8999999


Q ss_pred             ccccccccCCCCcccccccCchhhhc-ccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccC
Q 002875          750 FKYLTQLADGSFPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      ++........  ..+...|++||... ...++.++|||||||++|||++ |..|+.... ....      ..........
T Consensus       158 ~~~~~~~~~~--~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~-~~~~------~~~~~~~~~~  228 (262)
T cd05077         158 IPITVLSRQE--CVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKT-LAEK------ERFYEGQCML  228 (262)
T ss_pred             CCccccCccc--ccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcc-hhHH------HHHHhcCccC
Confidence            8864322111  11223356677664 4567888999999999999985 555544321 1100      0000110000


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ..+    ...++.+++.+||+.||.+||+++|+++.++
T Consensus       229 ~~~----~~~~~~~li~~cl~~dp~~Rp~~~~il~~~~  262 (262)
T cd05077         229 VTP----SCKELADLMTHCMNYDPNQRPFFRAIMRDIN  262 (262)
T ss_pred             CCC----ChHHHHHHHHHHcCCChhhCcCHHHHHHhcC
Confidence            011    1245778999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=3.5e-34  Score=303.32  Aligned_cols=240  Identities=18%  Similarity=0.217  Sum_probs=190.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|.|+||.||+|.. .+|+.||+|.+....  ...+.+.+|++++++++||||+++++++..++..|+||||+++|
T Consensus         8 ~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06642           8 KLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGG   87 (277)
T ss_pred             HHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCC
Confidence            778899999999999985 568899999987432  33567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhCC-CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccccc
Q 002875          689 NLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPAKI  765 (872)
Q Consensus       689 ~L~~~l~~~-~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~~~  765 (872)
                      +|.+++... .++.....++.|+++|++|||+.   +++|+||||+||++++++.+|++|||++.........  ...+.
T Consensus        88 ~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  164 (277)
T cd06642          88 SALDLLKPGPLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGT  164 (277)
T ss_pred             cHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCc
Confidence            999998754 57888889999999999999998   9999999999999999999999999998654322111  11234


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .+|.+||...+..++.++|||||||++|||+||+.|+........      ........ .  ..........+.+++.+
T Consensus       165 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~------~~~~~~~~-~--~~~~~~~~~~~~~li~~  235 (277)
T cd06642         165 PFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRV------LFLIPKNS-P--PTLEGQYSKPFKEFVEA  235 (277)
T ss_pred             ccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhH------HhhhhcCC-C--CCCCcccCHHHHHHHHH
Confidence            457788888777788899999999999999999988764321110      00000000 0  00111233567789999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.+|++||+|.|++++
T Consensus       236 ~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         236 CLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             HccCCcccCcCHHHHHHh
Confidence            999999999999999975

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.9e-35  Score=311.77  Aligned_cols=240  Identities=21%  Similarity=0.268  Sum_probs=190.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEee---c--cchhHHHHHHHHHHhhccCCCCceeEEEEEecCC--eeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIE---W--GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH--QAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~---~--~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lv~e  683 (872)
                      ..+++|+|+|-+||||.+ .+|.+||=-.++   .  .....+.|.+|+.+|+.|+|||||+++.++.+..  ..-+|+|
T Consensus        44 ~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTE  123 (632)
T KOG0584|consen   44 FDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITE  123 (632)
T ss_pred             hhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeee
Confidence            568899999999999997 568888732222   2  2234578999999999999999999999998765  4788999


Q ss_pred             ccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccccCCC
Q 002875          684 YLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       684 y~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      .|..|+|+.|+++  +.+....+.|++||++||.|||++ .|+|||||||..||+++. .|.+||+|.|+|...+.....
T Consensus       124 L~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~ak  202 (632)
T KOG0584|consen  124 LFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAK  202 (632)
T ss_pred             cccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhccccc
Confidence            9999999999976  457778889999999999999996 789999999999999984 588999999999877655545


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch--HHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL--QDEIKL  838 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  838 (872)
                      ...|++.+++||.|. ..|...+||||||..|+||+|+..|+.+-....         ++|....-+..+..  .-.-++
T Consensus       203 svIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~A---------QIYKKV~SGiKP~sl~kV~dPe  272 (632)
T KOG0584|consen  203 SVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPA---------QIYKKVTSGIKPAALSKVKDPE  272 (632)
T ss_pred             eeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHH---------HHHHHHHcCCCHHHhhccCCHH
Confidence            556888889999987 678899999999999999999999887443221         22222111111110  011246


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+++.+|+.. .++|||+.|+++.
T Consensus       273 vr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  273 VREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             HHHHHHHHhcC-chhccCHHHHhhC
Confidence            78899999999 9999999999853

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=3.4e-34  Score=312.45  Aligned_cols=247  Identities=21%  Similarity=0.227  Sum_probs=185.4

Q ss_pred             hhhhccCCCCCceeeee------cCCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecC-CeeEEE
Q 002875          612 ECEEAARPQSAAGCKAV------LPTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR-HQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~------~~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-~~~~lv  681 (872)
                      ..+.||+|+||.||+|.      ..+++.||||+++...  ...+.+.+|+.++.++ +|||||+++++|... ...++|
T Consensus        11 ~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv   90 (343)
T cd05103          11 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI   90 (343)
T ss_pred             ccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEE
Confidence            88999999999999996      3568899999997532  2345677899999999 689999999988754 467899


Q ss_pred             EcccCCCChHHHhhCC----------------------------------------------------------------
Q 002875          682 YDYLPNGNLSEKIRTK----------------------------------------------------------------  697 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~----------------------------------------------------------------  697 (872)
                      ||||++|+|.++++..                                                                
T Consensus        91 ~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (343)
T cd05103          91 VEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQED  170 (343)
T ss_pred             EeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhh
Confidence            9999999999998531                                                                


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC----Cccccccc
Q 002875          698 -----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS----FPAKIAWT  768 (872)
Q Consensus       698 -----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~----~~~~~~~~  768 (872)
                           .++.+...++.|+++|++|||+.   +|+||||||+||+++.++.+|++|||++.........    ...+...|
T Consensus       171 ~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y  247 (343)
T cd05103         171 LYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKW  247 (343)
T ss_pred             hhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcce
Confidence                 25566678999999999999998   9999999999999999999999999998653221111    11112236


Q ss_pred             CchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcc
Q 002875          769 ESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCT  847 (872)
Q Consensus       769 ~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  847 (872)
                      .+||......++.++|||||||++|||++ |..|+........  ...   ..........+.   ....++.+++..||
T Consensus       248 ~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~--~~~---~~~~~~~~~~~~---~~~~~~~~~~~~cl  319 (343)
T cd05103         248 MAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE--FCR---RLKEGTRMRAPD---YTTPEMYQTMLDCW  319 (343)
T ss_pred             ECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHH--HHH---HHhccCCCCCCC---CCCHHHHHHHHHHc
Confidence            67787777778889999999999999997 6667653221110  000   000000000011   11235778899999


Q ss_pred             cCCCCCCCCHHHHHHHHcccCC
Q 002875          848 RSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       848 ~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      +.||++|||+.|++++|+.+-.
T Consensus       320 ~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         320 HGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             cCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999987644

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=4.6e-34  Score=299.39  Aligned_cols=243  Identities=18%  Similarity=0.270  Sum_probs=191.6

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...++..||+|.+..+....+.+.+|++++++++|+||+++++++.+ ...++||||+++|+|.
T Consensus        10 ~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L~   88 (260)
T cd05073          10 LEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLL   88 (260)
T ss_pred             EEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCCCCcHH
Confidence            788999999999999998888899999988665566788899999999999999999999887 7789999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---ccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~  764 (872)
                      +++..    ..++.++..++.|++.|++|||+.   +++||||||+||+++.++.+|++|||.+..........   ...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~  165 (260)
T cd05073          89 DFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKF  165 (260)
T ss_pred             HHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcc
Confidence            99975    247888899999999999999998   99999999999999999999999999986543221111   111


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||+.....++.++|||||||++||++| |..||........   .....+...   .   +.......++.+++
T Consensus       166 ~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~---~~~~~~~~~---~---~~~~~~~~~~~~~i  236 (260)
T cd05073         166 PIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEV---IRALERGYR---M---PRPENCPEELYNIM  236 (260)
T ss_pred             cccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHH---HHHHhCCCC---C---CCcccCCHHHHHHH
Confidence            233677888877778889999999999999999 6666653321110   000001000   0   01112234678899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHccc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+|++.+|++||+++++.+.|+.+
T Consensus       237 ~~~l~~~p~~Rp~~~~l~~~L~~~  260 (260)
T cd05073         237 MRCWKNRPEERPTFEYIQSVLDDF  260 (260)
T ss_pred             HHHcccCcccCcCHHHHHHHHhcC
Confidence            999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=5e-34  Score=305.15  Aligned_cols=248  Identities=20%  Similarity=0.192  Sum_probs=184.0

Q ss_pred             hhhhccCCCCCceeeeec-----------------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-----------------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFC  672 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-----------------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~  672 (872)
                      ..+.+|+|+||.||++..                 .++..||||.+....  ...+.+.+|++++++++||||+++++++
T Consensus         9 ~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~   88 (296)
T cd05095           9 FKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVC   88 (296)
T ss_pred             eeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            778899999999998742                 234579999997532  2356788999999999999999999999


Q ss_pred             ecCCeeEEEEcccCCCChHHHhhCC-------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC
Q 002875          673 YNRHQAYLLYDYLPNGNLSEKIRTK-------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE  739 (872)
Q Consensus       673 ~~~~~~~lv~ey~~~g~L~~~l~~~-------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~  739 (872)
                      ...+..++||||+++|+|.+++...             .++.+...++.|++.|++|||+.   +|+||||||+||+++.
T Consensus        89 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dlkp~Nili~~  165 (296)
T cd05095          89 ITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDLATRNCLVGK  165 (296)
T ss_pred             ecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CeecccCChheEEEcC
Confidence            9999999999999999999998652             34567889999999999999999   9999999999999999


Q ss_pred             CCCeeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc--CCCCCCCCCCCCCccc
Q 002875          740 NMEPHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT--NGRLTNAGSSLQNKPI  813 (872)
Q Consensus       740 ~~~~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t--g~~p~~~~~~~~~~~~  813 (872)
                      ++.+|++|||+++.......    ........+++||......++.++|||||||++|||+|  |..|+...........
T Consensus       166 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~  245 (296)
T cd05095         166 NYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIEN  245 (296)
T ss_pred             CCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHH
Confidence            99999999999865422111    01111223556676666678889999999999999998  5556643221110000


Q ss_pred             c-ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          814 D-GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       814 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      . ............+...   .....+.+++.+||+.||++||+|+|+.+.|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         246 TGEFFRDQGRQVYLPKPA---LCPDSLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHHhhccccccCCCCC---CCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            0 0000000000000011   12256778999999999999999999999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=4.2e-34  Score=300.99  Aligned_cols=244  Identities=20%  Similarity=0.274  Sum_probs=190.7

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|...    .+..||+|.++...  ...+.+.+|+.++++++||||+++++++.+++..|+||||+
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   87 (267)
T cd05066           8 IEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYM   87 (267)
T ss_pred             eeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcC
Confidence            7789999999999999852    34479999987532  23567888999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-
Q 002875          686 PNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-  761 (872)
Q Consensus       686 ~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-  761 (872)
                      ++|+|.+++...   .++.+...++.|++.|++|||+.   +++||||||+||+++.++.+|++|||++.......... 
T Consensus        88 ~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~  164 (267)
T cd05066          88 ENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAY  164 (267)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCcccccccccceee
Confidence            999999999753   47888899999999999999998   99999999999999999999999999987543322111 


Q ss_pred             --cc--cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          762 --PA--KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       762 --~~--~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                        ..  ....|.+||...+..++.++|||||||++||+++ |..||.+.....   ......+...   .+..   ....
T Consensus       165 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~---~~~~~~~~~~---~~~~---~~~~  235 (267)
T cd05066         165 TTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQD---VIKAIEEGYR---LPAP---MDCP  235 (267)
T ss_pred             ecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHH---HHHHHhCCCc---CCCC---CCCC
Confidence              01  1123667888877778899999999999999887 888876433211   0000111110   1111   1223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+.+++.+|++.+|.+||+|+++++.|+++
T Consensus       236 ~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         236 AALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             HHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            4577899999999999999999999999765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=311.67  Aligned_cols=193  Identities=21%  Similarity=0.274  Sum_probs=167.1

Q ss_pred             cCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-C-----CCceeEEEEEecCCeeEE
Q 002875          608 FNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-H-----KNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H-----~niv~l~~~~~~~~~~~l  680 (872)
                      +.|++.+.||+|+||.|.||.. .+++.||||+++.......+...||.+|..++ |     -|+|++++|+...++.||
T Consensus       186 ~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  186 YRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            4567999999999999999985 67999999999987777778888999999987 4     499999999999999999


Q ss_pred             EEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC--CCeeEccccccccc
Q 002875          681 LYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN--MEPHLAEFGFKYLT  754 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~--~~~ki~dfg~~~~~  754 (872)
                      |+|.+.. +|.++|+.    ..+....+.++.||+.||.+||..   +|||+||||+||||.+.  ..+||+|||.+...
T Consensus       266 VfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~  341 (586)
T KOG0667|consen  266 VFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGSSCFE  341 (586)
T ss_pred             eehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEeccccccc
Confidence            9999976 99999986    346788899999999999999999   99999999999999744  36999999998764


Q ss_pred             cccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCC
Q 002875          755 QLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG  805 (872)
Q Consensus       755 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~  805 (872)
                      ....- .-....+|.+||++-+.+|..+.||||||||++||+||.+.|.++
T Consensus       342 ~q~vy-tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  342 SQRVY-TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             CCcce-eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            33221 223456799999999999999999999999999999997777643

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=9.9e-35  Score=314.48  Aligned_cols=232  Identities=14%  Similarity=0.089  Sum_probs=178.4

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHH-HHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFI-TRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~-~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|. .+++.++||||+++++++..++..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3689999999999985 579999999997532    2223344444 456789999999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++......  .....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~  157 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFC  157 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCccccc
Confidence            9999988653  46778889999999999999998   99999999999999999999999999986432111  11222


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|++||...+..++.++||||+||++|||+||+.||.......      ....+.... ....+   .....+.+++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~------~~~~~~~~~-~~~~~---~~~~~~~~ll  227 (325)
T cd05604         158 GTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAE------MYDNILHKP-LVLRP---GASLTAWSIL  227 (325)
T ss_pred             CChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHH------HHHHHHcCC-ccCCC---CCCHHHHHHH
Confidence            4556788898888888899999999999999999999987543211      111111111 11111   1224567889


Q ss_pred             HHcccCCCCCCCCHH
Q 002875          844 LLCTRSTPSDRPSME  858 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~  858 (872)
                      .+|++.||++||++.
T Consensus       228 ~~ll~~~p~~R~~~~  242 (325)
T cd05604         228 EELLEKDRQRRLGAK  242 (325)
T ss_pred             HHHhccCHHhcCCCC
Confidence            999999999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=5.5e-34  Score=300.47  Aligned_cols=243  Identities=19%  Similarity=0.238  Sum_probs=174.6

Q ss_pred             hccCCCCCceeeeecCC---CcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          615 EAARPQSAAGCKAVLPT---GITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~~---g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      .||+|+||+||+|...+   ...+|+|.+....  .....+.+|++.++.++||||++++++|.+.+..|+||||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999997543   3468888876432  234567889999999999999999999999999999999999999


Q ss_pred             hHHHhhCCC-------CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC----
Q 002875          690 LSEKIRTKR-------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD----  758 (872)
Q Consensus       690 L~~~l~~~~-------~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~----  758 (872)
                      |.+++....       ++.....++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++.......    
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~  158 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYIT  158 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccccccchheec
Confidence            999986532       4566788999999999999999   99999999999999999999999999986432111    


Q ss_pred             CCCcccccccCchhhhc-------ccCCcccccchhHHHHHHHHHcC-CCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          759 GSFPAKIAWTESGEFYN-------AMKEEMYMDVYGFGEIILEILTN-GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~-------~~~~~~~~Dv~S~Gvil~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      .........|.+||+..       ...++.++||||+||++|||+|+ ..|+.......  ............  .+.+.
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~--~~~~~~~~~~~~--~~~~~  234 (269)
T cd05042         159 KDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQ--VLKQVVREQDIK--LPKPQ  234 (269)
T ss_pred             cCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHH--HHHHHhhccCcc--CCCCc
Confidence            11111223356777653       23467789999999999999995 45554322110  000000000000  00011


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ........+.+++..|| .||++|||++||++.|.
T Consensus       235 ~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         235 LDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             ccccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            11122344566777888 59999999999999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.4e-34  Score=298.62  Aligned_cols=246  Identities=20%  Similarity=0.275  Sum_probs=195.0

Q ss_pred             hcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          607 SFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      .|.  ..+.+|+|+||.||+|...+++.||||.+.......+.+.+|+..+++++||||+++++++.+....++||||++
T Consensus         7 ~~~--i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034           7 SLK--LERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             hee--eeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccC
Confidence            355  778999999999999998888999999998766667788999999999999999999999999899999999999


Q ss_pred             CCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          687 NGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       687 ~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      +|+|.+++..    ..++.+...++.|++.|++|||+.   +++||||||+||++++++.+|++|||++.........  
T Consensus        85 ~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  161 (261)
T cd05034          85 KGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAR  161 (261)
T ss_pred             CCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccchhhhhh
Confidence            9999999975    347888999999999999999999   9999999999999999999999999998654321110  


Q ss_pred             -CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          761 -FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       .......|.+||...+..++.++||||+||++||++| |+.||.+... . ..    ...+........+.   ....+
T Consensus       162 ~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~-~-~~----~~~~~~~~~~~~~~---~~~~~  232 (261)
T cd05034         162 EGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN-R-EV----LEQVERGYRMPRPP---NCPEE  232 (261)
T ss_pred             hccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH-H-HH----HHHHHcCCCCCCCC---CCCHH
Confidence             0011223677888777778889999999999999999 7777653221 1 00    11111100000011   12346


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      +.+++.+|+..+|++||+++++.+.|+.
T Consensus       233 ~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         233 LYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             HHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            7889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=5.7e-34  Score=302.80  Aligned_cols=249  Identities=19%  Similarity=0.193  Sum_probs=192.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||++.. .+|+.||+|++....  ...+.+.+|++++++++||||+++++++...+..++||||+++|
T Consensus         9 ~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   88 (284)
T cd06620           9 TISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCG   88 (284)
T ss_pred             HHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCC
Confidence            889999999999999985 568999999886542  23567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccc
Q 002875          689 NLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA  766 (872)
Q Consensus       689 ~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~  766 (872)
                      +|.+++...  .++.....++.+++.|+.|||+.+  +++||||||+||++++++.++|+|||++............+..
T Consensus        89 ~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~  166 (284)
T cd06620          89 SLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVH--RIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTS  166 (284)
T ss_pred             CHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhc--CeeccCCCHHHEEECCCCcEEEccCCcccchhhhccCccccCc
Confidence            999998763  478888999999999999999732  8999999999999999999999999997643222222223344


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-----ccccccccccccccCCCCchHHHHHHHHH
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-----IDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      .+.+||......++.++|||||||++|||+||+.||..........     .......+.........  ..+....+.+
T Consensus       167 ~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  244 (284)
T cd06620         167 TYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLP--SSDFPEDLRD  244 (284)
T ss_pred             ccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCC--chhcCHHHHH
Confidence            5677888777778889999999999999999999987433211000     00111112111111101  1123456788


Q ss_pred             HHHHcccCCCCCCCCHHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ++.+|++.||++|||++|++++.
T Consensus       245 li~~~l~~dp~~Rpt~~e~~~~~  267 (284)
T cd06620         245 FVDACLLKDPTERPTPQQLCAMP  267 (284)
T ss_pred             HHHHHhcCCcccCcCHHHHhcCc
Confidence            99999999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=4.5e-34  Score=314.59  Aligned_cols=254  Identities=20%  Similarity=0.225  Sum_probs=191.6

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC----
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR----  675 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~----  675 (872)
                      +.+.|.  ..+.+|+|+||.||+|.. .+++.||||++...   ....+.+.+|+.+++.++||||+++++++...    
T Consensus        22 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~   99 (364)
T cd07875          22 VLKRYQ--NLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE   99 (364)
T ss_pred             hhccee--EEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccc
Confidence            445566  889999999999999985 56889999999743   23345677899999999999999999988643    


Q ss_pred             --CeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          676 --HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       676 --~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                        ...|+||||+++ +|.+.+....++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       100 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~  175 (364)
T cd07875         100 EFQDVYIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLART  175 (364)
T ss_pred             ccCeEEEEEeCCCC-CHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCCCccc
Confidence              357999999975 88888887788889999999999999999998   999999999999999999999999999875


Q ss_pred             ccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-c---------------c
Q 002875          754 TQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-G---------------L  816 (872)
Q Consensus       754 ~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~---------------~  816 (872)
                      ...... ....++..|++||+..+..++.++|||||||++|||+||+.||........+... .               .
T Consensus       176 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (364)
T cd07875         176 AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPT  255 (364)
T ss_pred             cCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHH
Confidence            433211 1122455688899888888899999999999999999999998754321100000 0               0


Q ss_pred             ccccccccc---------------cC-CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 LGEMYNENE---------------VG-SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 ~~~~~~~~~---------------~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........+               .+ ...........+.+++.+|++.||.+|||++|++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         256 VRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             HHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            000000000               00 000001122467899999999999999999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-34  Score=303.57  Aligned_cols=244  Identities=20%  Similarity=0.272  Sum_probs=192.1

Q ss_pred             hhhhccCCCCCceeeeecC---CCc--EEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLP---TGI--TVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~---~g~--~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.||+|.||.||+|+..   .|+  .||||.-+.+  ....+.|..|..+|+.++|||||+++|+|.+ ...+||||.
T Consensus       393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~WivmEL  471 (974)
T KOG4257|consen  393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMWIVMEL  471 (974)
T ss_pred             HHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-cceeEEEec
Confidence            5678999999999999852   343  6899988753  3357789999999999999999999999976 468999999


Q ss_pred             cCCCChHHHhhCCC---CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          685 LPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       685 ~~~g~L~~~l~~~~---~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      ++-|.|.++++...   +...-..++.||..||+|||+.   ..|||||.++|||+.+...+|++|||+++........ 
T Consensus       472 ~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYk  548 (974)
T KOG4257|consen  472 APLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYK  548 (974)
T ss_pred             ccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhhccccchhh
Confidence            99999999998754   4456678999999999999999   9999999999999999999999999999876543311 


Q ss_pred             -Cc--ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 -FP--AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 -~~--~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                       ..  ..+.|+ +||-++...++.++|||-|||.+||++. |..||.+-....      .+..+-+....+-+   +.++
T Consensus       549 aS~~kLPIKWm-aPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsD------VI~~iEnGeRlP~P---~nCP  618 (974)
T KOG4257|consen  549 ASRGKLPIKWM-APESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSD------VIGHIENGERLPCP---PNCP  618 (974)
T ss_pred             ccccccceeec-CccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccc------eEEEecCCCCCCCC---CCCC
Confidence             11  145655 5577778889999999999999999976 667876433211      11122122212222   2344


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      +.+..++.+||..||.+||.+.|+...|+++..
T Consensus       619 p~LYslmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  619 PALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             hHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence            567789999999999999999999999987654

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=3.4e-34  Score=308.03  Aligned_cols=245  Identities=21%  Similarity=0.255  Sum_probs=187.6

Q ss_pred             hhhhccCCCCCceeeeec--------CCCcEEEEEEeecc--chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL--------PTGITVSVKKIEWG--ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--------~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.||+|+||.||++..        .++..||+|.++..  ......+.+|+++++++ +||||++++++|...+..|+
T Consensus        22 i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~l  101 (307)
T cd05098          22 LGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  101 (307)
T ss_pred             EeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            788999999999999874        23457999999753  22345677899999999 79999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          681 LYDYLPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      ||||+++|+|.+++...                  .++.+...++.|++.||+|||+.   +++||||||+||+++.++.
T Consensus       102 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill~~~~~  178 (307)
T cd05098         102 IVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNV  178 (307)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHHheEEcCCCc
Confidence            99999999999999642                  46788899999999999999998   9999999999999999999


Q ss_pred             eeEccccccccccccCC--CCcc--cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccc
Q 002875          743 PHLAEFGFKYLTQLADG--SFPA--KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~--~~~~--~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~  817 (872)
                      +|++|||+++.......  ....  ....|++||...+..++.++||||+||++|||+| |..|+.. .....  .....
T Consensus       179 ~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~-~~~~~--~~~~~  255 (307)
T cd05098         179 MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG-VPVEE--LFKLL  255 (307)
T ss_pred             EEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCc-CCHHH--HHHHH
Confidence            99999999865432110  0111  1123677787777778889999999999999999 5566542 21110  00001


Q ss_pred             cccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          818 GEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ...   . .  .+.......++.+++.+||+.+|++||||+|+++.|+++.
T Consensus       256 ~~~---~-~--~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~  300 (307)
T cd05098         256 KEG---H-R--MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  300 (307)
T ss_pred             HcC---C-C--CCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence            010   0 0  0111122346778899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=2.4e-34  Score=309.56  Aligned_cols=248  Identities=18%  Similarity=0.208  Sum_probs=185.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||+|+. .+++.||||.++....  ....+.+|++++++++||||+++++++..++..++||||+++ 
T Consensus        10 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-   88 (309)
T cd07872          10 KLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDK-   88 (309)
T ss_pred             EEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCCC-
Confidence            788999999999999986 4688999999875322  234567899999999999999999999999999999999985 


Q ss_pred             ChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          689 NLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       689 ~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      +|.+++...   .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........  ...
T Consensus        89 ~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  165 (309)
T cd07872          89 DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEV  165 (309)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceecCCCcccccccc
Confidence            888887643   46788889999999999999998   9999999999999999999999999998654322211  122


Q ss_pred             cccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc---------cccccc------ccccccC
Q 002875          764 KIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID---------GLLGEM------YNENEVG  827 (872)
Q Consensus       764 ~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~---------~~~~~~------~~~~~~~  827 (872)
                      +...|.+||... ...++.++||||+||++|||+||+.||.+..........         ......      .+.....
T Consensus       166 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
T cd07872         166 VTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPK  245 (309)
T ss_pred             ccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCc
Confidence            345577778664 346788899999999999999999998754321100000         000000      0000000


Q ss_pred             CC-----CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SS-----SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~-----~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..     ........++.+++.+|++.||++|||++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  286 (309)
T cd07872         246 YKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKH  286 (309)
T ss_pred             cCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcC
Confidence            00     0011223467799999999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1e-34  Score=321.22  Aligned_cols=243  Identities=14%  Similarity=0.109  Sum_probs=184.4

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ...+.||+|+||.||+|.. .+|+.||||.+....    ...+.+.+|++++++++||||+++++++.+++..|+|||||
T Consensus         4 ~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~   83 (376)
T cd05598           4 VKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYI   83 (376)
T ss_pred             eEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCC
Confidence            3788999999999999985 578999999986432    23456788999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-----
Q 002875          686 PNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-----  758 (872)
Q Consensus       686 ~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-----  758 (872)
                      ++|+|.+++...  .+......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.......     
T Consensus        84 ~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~  160 (376)
T cd05598          84 PGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY  160 (376)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCcccccccccccc
Confidence            999999999764  35667778899999999999999   99999999999999999999999999974221000     


Q ss_pred             ----------------------------------------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcC
Q 002875          759 ----------------------------------------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN  798 (872)
Q Consensus       759 ----------------------------------------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg  798 (872)
                                                              .....++..|++||+.....++.++||||+||++|||+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G  240 (376)
T cd05598         161 QKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG  240 (376)
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhC
Confidence                                                    0011245567888988888889999999999999999999


Q ss_pred             CCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCC---CHHHHHHH
Q 002875          799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP---SMEEALKL  863 (872)
Q Consensus       799 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp---t~~~v~~~  863 (872)
                      +.||....................   .   +........+.+++.+|+ .+|.+|+   |++|++++
T Consensus       241 ~~Pf~~~~~~~~~~~i~~~~~~~~---~---~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         241 QPPFLADTPAETQLKVINWETTLH---I---PSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             CCCCCCCCHHHHHHHHhccCcccc---C---CCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCC
Confidence            999975442111000000000000   0   000112234556666655 4999999   89998866

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.2e-34  Score=324.95  Aligned_cols=244  Identities=15%  Similarity=0.173  Sum_probs=189.4

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCC-----
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-----  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----  676 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ......+.+|+..+..++|+||+++++.+...+     
T Consensus        32 ~rY~--i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~  109 (496)
T PTZ00283         32 KKYW--ISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE  109 (496)
T ss_pred             CCEE--EEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence            3455  889999999999999984 68999999999753   233556788999999999999999988775432     


Q ss_pred             ---eeEEEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          677 ---QAYLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       677 ---~~~lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                         ..++||||+++|+|.++++.      ..++.....++.|++.||+|+|+.   +|+||||||+||+++.++.+||+|
T Consensus       110 ~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~vkL~D  186 (496)
T PTZ00283        110 NVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGLVKLGD  186 (496)
T ss_pred             cceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCCEEEEe
Confidence               36899999999999999864      235677788999999999999999   999999999999999999999999


Q ss_pred             ccccccccccC----CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccc
Q 002875          748 FGFKYLTQLAD----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE  823 (872)
Q Consensus       748 fg~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  823 (872)
                      ||+++......    .....++..|++||......++.++|||||||++|||+||+.||.......      .+......
T Consensus       187 FGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~------~~~~~~~~  260 (496)
T PTZ00283        187 FGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEE------VMHKTLAG  260 (496)
T ss_pred             cccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHhcC
Confidence            99987543211    112235566888999888888999999999999999999999986432110      01111111


Q ss_pred             cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .....++   ....++.+++.+||+.||++||++.+++++
T Consensus       261 ~~~~~~~---~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        261 RYDPLPP---SISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             CCCCCCC---CCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            1011111   223467789999999999999999999865

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=5.1e-34  Score=329.92  Aligned_cols=246  Identities=16%  Similarity=0.157  Sum_probs=189.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||++....    ...+.+.+|++++++++|||||++++++.+.+..|+||||++
T Consensus         6 Ii~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~e   85 (932)
T PRK13184          6 IIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIE   85 (932)
T ss_pred             EEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCC
Confidence            778999999999999986 468999999986432    224568889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC-------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          687 NGNLSEKIRT-------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       687 ~g~L~~~l~~-------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      +|+|.+++..             ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus        86 GGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiDFGLAk~  162 (932)
T PRK13184         86 GYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWGAAIF  162 (932)
T ss_pred             CCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEecCccee
Confidence            9999998853             124566788999999999999999   999999999999999999999999999875


Q ss_pred             ccccC--------------------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc
Q 002875          754 TQLAD--------------------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI  813 (872)
Q Consensus       754 ~~~~~--------------------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~  813 (872)
                      .....                    .....++..|++||...+..++.++||||+||++|||+||+.||....... ...
T Consensus       163 i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~k-i~~  241 (932)
T PRK13184        163 KKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRK-ISY  241 (932)
T ss_pred             cccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhh-hhh
Confidence            41100                    001124566888898888888999999999999999999999986532211 000


Q ss_pred             cccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCC-CHHHHHHHHccc
Q 002875          814 DGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP-SMEEALKLLSGL  867 (872)
Q Consensus       814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-t~~~v~~~L~~~  867 (872)
                      .   .....+...   ....+....+.+++.+|++.||++|| +++++.+.|+..
T Consensus       242 ~---~~i~~P~~~---~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~  290 (932)
T PRK13184        242 R---DVILSPIEV---APYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPH  290 (932)
T ss_pred             h---hhccChhhc---cccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            0   011111100   00112334577889999999999996 566676766544

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=1.1e-33  Score=295.95  Aligned_cols=241  Identities=17%  Similarity=0.220  Sum_probs=191.9

Q ss_pred             hhhhccCCCCCceeeeecCC-CcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLPT-GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.+|.|+||.||+|...+ ++.||+|.++.... .+.+.+|++.+++++||||+++++++.+++..|+||||+++++|
T Consensus         7 ~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L   85 (256)
T cd06612           7 ILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSV   85 (256)
T ss_pred             hhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcH
Confidence            78899999999999999754 88999999975433 67889999999999999999999999999999999999999999


Q ss_pred             HHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          691 SEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       691 ~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      .+++..   ..++.+...++.|+++|++|||+.   +|+||||+|+||++++++.+||+|||++........  ....+.
T Consensus        86 ~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  162 (256)
T cd06612          86 SDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGT  162 (256)
T ss_pred             HHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCC
Confidence            999864   357888999999999999999998   999999999999999999999999999875433221  112234


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||+..+..++.++|||||||++|||+||+.|+...........      ..... .............+.+++.+
T Consensus       163 ~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~i~~  235 (256)
T cd06612         163 PFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFM------IPNKP-PPTLSDPEKWSPEFNDFVKK  235 (256)
T ss_pred             ccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhh------hccCC-CCCCCchhhcCHHHHHHHHH
Confidence            457788888777888999999999999999999998864332111100      00000 00011112233467889999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.||++|||++|++++
T Consensus       236 ~l~~~P~~Rps~~~il~~  253 (256)
T cd06612         236 CLVKDPEERPSAIQLLQH  253 (256)
T ss_pred             HHhcChhhCcCHHHHhcC
Confidence            999999999999999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=6.2e-34  Score=301.75  Aligned_cols=245  Identities=18%  Similarity=0.233  Sum_probs=187.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCc----EEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGI----TVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~----~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|+||.||+|+. ++|.    .||||.++...  ...+.+.+|+.++++++||||++++++|... ..+++|||
T Consensus        11 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~l~~~~   89 (279)
T cd05109          11 KVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-TVQLVTQL   89 (279)
T ss_pred             eeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-CcEEEEEc
Confidence            788999999999999984 4555    48999986432  2356778899999999999999999999764 57899999


Q ss_pred             cCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          685 LPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       685 ~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      +++|+|.++++.   ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.........
T Consensus        90 ~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~  166 (279)
T cd05109          90 MPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEY  166 (279)
T ss_pred             CCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCceeeccccccee
Confidence            999999999965   357888999999999999999999   99999999999999999999999999987653222111


Q ss_pred             ----cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          762 ----PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       762 ----~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                          ......|++||......++.++|||||||++|||+| |..|+..... .  .....+.....   ...+   ....
T Consensus       167 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~-~--~~~~~~~~~~~---~~~~---~~~~  237 (279)
T cd05109         167 HADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPA-R--EIPDLLEKGER---LPQP---PICT  237 (279)
T ss_pred             ecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH-H--HHHHHHHCCCc---CCCC---ccCC
Confidence                111234677787777778889999999999999999 6666643221 0  00011111100   0001   1223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ..+.+++.+||+.||++||++.|+++.|+.++.
T Consensus       238 ~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~  270 (279)
T cd05109         238 IDVYMIMVKCWMIDSECRPRFRELVDEFSRMAR  270 (279)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            467789999999999999999999999987754

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=3.4e-34  Score=314.83  Aligned_cols=248  Identities=15%  Similarity=0.092  Sum_probs=187.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ..+.+|+|+||.||++.. .+++.||+|.+....    ...+.+.+|+.+++.++||||+++++++.+++..|+
T Consensus        43 ~~y~--i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (371)
T cd05622          43 EDYE--VVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYM  120 (371)
T ss_pred             hhcE--EEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEE
Confidence            3455  889999999999999986 578899999986422    234567889999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          681 LYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      |||||++|+|.+++.. ..+......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus       121 v~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~  197 (371)
T cd05622         121 VMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGM  197 (371)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCc
Confidence            9999999999999875 346677788999999999999999   999999999999999999999999999875432211


Q ss_pred             ---CCcccccccCchhhhccc----CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          760 ---SFPAKIAWTESGEFYNAM----KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       760 ---~~~~~~~~~~~~e~~~~~----~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                         ....++..|++||+....    .++.++||||+||++|||+||+.||.......      ....+.........+..
T Consensus       198 ~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~  271 (371)
T cd05622         198 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG------TYSKIMNHKNSLTFPDD  271 (371)
T ss_pred             ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHH------HHHHHHcCCCcccCCCc
Confidence               122355667888877543    36788999999999999999999997543211      01111110000001111


Q ss_pred             HHHHHHHHHHHHHcccCCCCC--CCCHHHHHHHH
Q 002875          833 QDEIKLVLDVALLCTRSTPSD--RPSMEEALKLL  864 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~--Rpt~~~v~~~L  864 (872)
                      ......+.+++.+|+..++.+  ||+++|++++.
T Consensus       272 ~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~  305 (371)
T cd05622         272 NDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL  305 (371)
T ss_pred             CCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCc
Confidence            123345678888899844443  78999998864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1.5e-34  Score=324.06  Aligned_cols=246  Identities=18%  Similarity=0.209  Sum_probs=178.7

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecC--------CeeEEE
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--------HQAYLL  681 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--------~~~~lv  681 (872)
                      ...+.||+|+||.||+|.. .+|+.||||++....   ....+|+.++++++|||||++++++...        ...++|
T Consensus        69 ~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lv  145 (440)
T PTZ00036         69 KLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVV  145 (440)
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEE
Confidence            3788999999999999986 578999999986432   2345789999999999999999987532        246799


Q ss_pred             EcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccc
Q 002875          682 YDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLT  754 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~  754 (872)
                      |||+++ ++.+++..      ..++.....++.|++.||+|||+.   +|+||||||+||+++.++ .+||+|||+++..
T Consensus       146 mE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~  221 (440)
T PTZ00036        146 MEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDFGSAKNL  221 (440)
T ss_pred             EecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeeccccchhc
Confidence            999985 77776642      357788889999999999999999   999999999999999664 6999999999754


Q ss_pred             cccCCC-CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-ccccc--------cc---
Q 002875          755 QLADGS-FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DGLLG--------EM---  820 (872)
Q Consensus       755 ~~~~~~-~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~~~~--------~~---  820 (872)
                      ...... ...++.+|.+||+..+ ..++.++||||+||++|||+||..||.+......... .....        .+   
T Consensus       222 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~  301 (440)
T PTZ00036        222 LAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPN  301 (440)
T ss_pred             cCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchh
Confidence            332221 1224556778887644 4688899999999999999999988875432110000 00000        00   


Q ss_pred             ccccccC--CCCchH-----HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 YNENEVG--SSSSLQ-----DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ~~~~~~~--~~~~~~-----~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.....+  ......     ....++.+++.+||+.||.+|||+.|++++
T Consensus       302 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        302 YADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             hhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence            0000000  000011     123468899999999999999999999854

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=6.4e-34  Score=308.57  Aligned_cols=249  Identities=17%  Similarity=0.162  Sum_probs=183.2

Q ss_pred             hhhhccCC--CCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARP--QSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g--~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..++||+|  +|+.||++.. .+|+.||||+++...   ...+.+.+|+++++.++|||||+++++|.+++..++||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            45789999  6788999985 689999999997532   23456778999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--
Q 002875          686 PNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--  759 (872)
Q Consensus       686 ~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--  759 (872)
                      ++|+|.+++..    ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.++++|||..........  
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~  158 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRL  158 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhccccccccc
Confidence            99999999853    357888899999999999999998   999999999999999999999999986432211100  


Q ss_pred             -------CCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc--ccccccccc-------
Q 002875          760 -------SFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP--IDGLLGEMY-------  821 (872)
Q Consensus       760 -------~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~--~~~~~~~~~-------  821 (872)
                             ....+...|.+||+...  ..++.++|||||||++|||+||+.||..........  .........       
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (327)
T cd08227         159 RVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPA  238 (327)
T ss_pred             cccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhh
Confidence                   11112233567777654  457889999999999999999999986422110000  000000000       


Q ss_pred             -----------------cccc----c------CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 -----------------NENE----V------GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 -----------------~~~~----~------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                       ....    .      ...+........+.+++.+||+.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~  307 (327)
T cd08227         239 EELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  307 (327)
T ss_pred             hhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcC
Confidence                             0000    0      0000111233567899999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1e-33  Score=296.14  Aligned_cols=242  Identities=21%  Similarity=0.279  Sum_probs=190.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...++..+|||.+.........+.+|++++++++||||+++++++......++||||+++|+|.
T Consensus         8 ~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~   87 (256)
T cd05112           8 LVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLS   87 (256)
T ss_pred             EEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHH
Confidence            67889999999999999877889999998765555677889999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---cccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAKI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~~  765 (872)
                      +++..   ..++.....++.|++.|++|||+.   +++||||||+||+++.++.+||+|||.+..........   ....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~  164 (256)
T cd05112          88 DYLRAQRGKFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFP  164 (256)
T ss_pred             HHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccc
Confidence            99865   247888899999999999999998   99999999999999999999999999986432211111   1112


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||...+..++.++||||+||++|||++ |..||.......   ............ .  +.   .....+.+++.
T Consensus       165 ~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~---~~~~~~~~~~~~-~--~~---~~~~~~~~l~~  235 (256)
T cd05112         165 VKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSE---VVETINAGFRLY-K--PR---LASQSVYELMQ  235 (256)
T ss_pred             hhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHH---HHHHHhCCCCCC-C--CC---CCCHHHHHHHH
Confidence            23677888777778889999999999999998 777765322110   000000000000 0  11   12246888999


Q ss_pred             HcccCCCCCCCCHHHHHHHHc
Q 002875          845 LCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      +||+.+|++|||++|+++.|.
T Consensus       236 ~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         236 HCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             HHcccChhhCCCHHHHHHhhC
Confidence            999999999999999998874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=1.5e-33  Score=296.09  Aligned_cols=240  Identities=21%  Similarity=0.274  Sum_probs=189.5

Q ss_pred             hhccCCCCCceeeeecCC----CcEEEEEEeeccchh--HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVLPT----GITVSVKKIEWGATR--IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~----g~~vavK~~~~~~~~--~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.+|+|+||.||+|....    +..||||.+......  .+.+.+|++.+++++|+||+++++++.+.+..++||||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            368999999999999754    889999999764433  57788999999999999999999999999999999999999


Q ss_pred             CChHHHhhCC-----------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          688 GNLSEKIRTK-----------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       688 g~L~~~l~~~-----------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      |+|.+++...           .++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+|++|||.+.....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEccccccccccc
Confidence            9999999753           47888999999999999999998   999999999999999999999999999876543


Q ss_pred             cC----CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcC-CCCCCCCCCCCCccccccccccccccccCCCCc
Q 002875          757 AD----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN-GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSS  831 (872)
Q Consensus       757 ~~----~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  831 (872)
                      ..    .........|.+||......++.++||||+||++|||+++ ..||.......      .............+  
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~------~~~~~~~~~~~~~~--  229 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEE------VLEYLRKGYRLPKP--  229 (262)
T ss_pred             ccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHH------HHHHHHcCCCCCCC--
Confidence            21    1111123346778887777888999999999999999995 66665432110      01111111101111  


Q ss_pred             hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          832 LQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       832 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                       .....++.+++.+||+.||++|||++|++++|+
T Consensus       230 -~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         230 -EYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             -ccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence             122456889999999999999999999999874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=6.2e-34  Score=300.10  Aligned_cols=244  Identities=19%  Similarity=0.281  Sum_probs=189.9

Q ss_pred             hhhhccCCCCCceeeeecC-CC---cEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TG---ITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g---~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|... +|   ..||||.++..  ....+.+..|+.++++++||||+++++++.+++..++||||+
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~   87 (269)
T cd05065           8 IEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFM   87 (269)
T ss_pred             EEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecC
Confidence            7788999999999999863 33   36999998753  234567889999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      ++|+|.+++..   ..++.+...++.|++.|++|||+.   +++||||||+||+++.++.+|++|||+++........  
T Consensus        88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~  164 (269)
T cd05065          88 ENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPT  164 (269)
T ss_pred             CCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCccccccccCccccc
Confidence            99999999865   347888899999999999999998   9999999999999999999999999998654322111  


Q ss_pred             C---ccc--ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          761 F---PAK--IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       761 ~---~~~--~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      .   ..+  ...|.+||+.....++.++|||||||++||+++ |..||.......   ..........   .+..   .+
T Consensus       165 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~---~~~~i~~~~~---~~~~---~~  235 (269)
T cd05065         165 YTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD---VINAIEQDYR---LPPP---MD  235 (269)
T ss_pred             cccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHH---HHHHHHcCCc---CCCc---cc
Confidence            0   011  123677888877788889999999999999987 888876432111   0011111100   1111   12


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ....+.+++.+||+.+|++||++++++..|+.+
T Consensus       236 ~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         236 CPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            234567899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=5.3e-34  Score=306.18  Aligned_cols=245  Identities=21%  Similarity=0.264  Sum_probs=188.0

Q ss_pred             hhhhccCCCCCceeeeec--------CCCcEEEEEEeecc--chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL--------PTGITVSVKKIEWG--ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--------~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.+|+|+||.||+|..        .++..||+|.+...  ....+.+.+|+..++++ +||||+++++++...+..|+
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l   98 (304)
T cd05101          19 LGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV   98 (304)
T ss_pred             ecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEE
Confidence            778999999999999863        24568999998643  23456788899999999 89999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          681 LYDYLPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      ||||+++|+|.+++...                  .++.+...++.|+++|++|||+.   +|+||||||+||++++++.
T Consensus        99 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nili~~~~~  175 (304)
T cd05101          99 IVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVLVTENNV  175 (304)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---CeeecccccceEEEcCCCc
Confidence            99999999999998642                  35677889999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccc
Q 002875          743 PHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~  817 (872)
                      +||+|||+++........    .......|.+||...+..++.++|||||||++|||+| |+.|+.... ...     ..
T Consensus       176 ~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-~~~-----~~  249 (304)
T cd05101         176 MKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP-VEE-----LF  249 (304)
T ss_pred             EEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC-HHH-----HH
Confidence            999999998754322111    1111223677787777778889999999999999999 556654321 111     11


Q ss_pred             cccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          818 GEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ...........+   ......+.+++.+||+.+|++||||.|+++.|+++.
T Consensus       250 ~~~~~~~~~~~~---~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~  297 (304)
T cd05101         250 KLLKEGHRMDKP---ANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRIL  297 (304)
T ss_pred             HHHHcCCcCCCC---CCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHH
Confidence            111111100001   123356778999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=7.5e-34  Score=297.35  Aligned_cols=240  Identities=19%  Similarity=0.253  Sum_probs=186.9

Q ss_pred             hhccCCCCCceeeeecCC--C--cEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVLPT--G--ITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~--g--~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.+|+|++|.||+|...+  |  ..||||.+.....  ..+.+.+|++.+++++|||||++++++.+ ...++||||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            368999999999998633  3  3699999976544  46678899999999999999999999988 889999999999


Q ss_pred             CChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---
Q 002875          688 GNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---  760 (872)
Q Consensus       688 g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---  760 (872)
                      |+|.+++...    .++.....++.|+++||+|||+.   +++||||||+||+++.++.+|++|||+++........   
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  156 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVM  156 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEeccccccccccccccceec
Confidence            9999998653    47888899999999999999998   9999999999999999999999999998755332111   


Q ss_pred             --CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          761 --FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       761 --~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                        ...+...|.+||+.....++.++|||||||++|||+| |..|+....... . ... ...  .......+   .....
T Consensus       157 ~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~-~-~~~-~~~--~~~~~~~~---~~~~~  228 (257)
T cd05040         157 EEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQ-I-LKK-IDK--EGERLERP---EACPQ  228 (257)
T ss_pred             ccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHH-H-HHH-HHh--cCCcCCCC---ccCCH
Confidence              1112234678888877788899999999999999999 888875332111 0 000 000  00000001   12235


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      .+.+++.+|++.+|++|||+.|+++.|.
T Consensus       229 ~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         229 DIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             HHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            6788999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=2.2e-33  Score=297.13  Aligned_cols=240  Identities=18%  Similarity=0.214  Sum_probs=191.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|.|+||.||+|+. .+++.||||.+....  ...+.+.+|+.++++++||||+++++++.+++..|+||||+++|
T Consensus         8 ~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06640           8 KLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGG   87 (277)
T ss_pred             hhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCC
Confidence            778899999999999986 468899999987532  34567888999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          689 NLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       689 ~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      +|.+++.. ..++.+...++.|++.|++|+|+.   +++|+||+|+||+++.++.++++|||++........  ....+.
T Consensus        88 ~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  164 (277)
T cd06640          88 SALDLLRAGPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGT  164 (277)
T ss_pred             cHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCc
Confidence            99999875 346777888999999999999998   999999999999999999999999999865432211  111234


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .++.+||...+...+.++|||||||++|||+||..|+.+.......      ....... .  ..........+.+++.+
T Consensus       165 ~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~~li~~  235 (277)
T cd06640         165 PFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVL------FLIPKNN-P--PTLTGEFSKPFKEFIDA  235 (277)
T ss_pred             ccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHh------hhhhcCC-C--CCCchhhhHHHHHHHHH
Confidence            4577888887777888999999999999999999988643321100      0000000 0  11123345668899999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.+|++||+++|++++
T Consensus       236 ~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         236 CLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             HcccCcccCcCHHHHHhC
Confidence            999999999999999866

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-33  Score=299.54  Aligned_cols=243  Identities=16%  Similarity=0.210  Sum_probs=187.9

Q ss_pred             hhhhccCCCCCceeeeecC------CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ....+|+|+||.||+|...      +++.||+|.+....  .....+.+|+.++++++||||+++++++...+..++|||
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   89 (277)
T cd05032          10 LIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVME   89 (277)
T ss_pred             EEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEe
Confidence            7788999999999999853      34789999986543  234567889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          684 YLPNGNLSEKIRTK------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       684 y~~~g~L~~~l~~~------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      |+++|+|.+++...            .++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~kl~dfg~~  166 (277)
T cd05032          90 LMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVKIGDFGMT  166 (277)
T ss_pred             cCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCEEECCcccc
Confidence            99999999998642            36778889999999999999998   9999999999999999999999999998


Q ss_pred             ccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccccc
Q 002875          752 YLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       752 ~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      +.......    ....+...|.+||......++.++|||||||++||++| |..|+.+.....      ...........
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~------~~~~~~~~~~~  240 (277)
T cd05032         167 RDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEE------VLKFVIDGGHL  240 (277)
T ss_pred             hhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHH------HHHHHhcCCCC
Confidence            65432211    11112234667787777778889999999999999999 676665322111      00011111101


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      ..+.   .....+.+++.+||+.+|++|||+.|+++.|++
T Consensus       241 ~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         241 DLPE---NCPDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             CCCC---CCCHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence            1111   123567899999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=5.2e-34  Score=302.62  Aligned_cols=246  Identities=17%  Similarity=0.238  Sum_probs=191.3

Q ss_pred             hhhhccCCCCCceeeeecCC-----CcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEec-CCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLPT-----GITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYN-RHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-----g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lv~e  683 (872)
                      ..+.+|+|+||.||+|....     +..||+|++...  ....+.+.+|+.++++++||||+++++++.. +...++++|
T Consensus        10 ~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~   89 (280)
T cd05043          10 LSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYP   89 (280)
T ss_pred             EeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEE
Confidence            77899999999999999755     788999998753  2345678889999999999999999999876 467899999


Q ss_pred             ccCCCChHHHhhC----------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          684 YLPNGNLSEKIRT----------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       684 y~~~g~L~~~l~~----------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      |+++|+|.+++..          ..++.+...++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++.
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl~d~g~~~~  166 (280)
T cd05043          90 YMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDNALSRD  166 (280)
T ss_pred             cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEECCCCCccc
Confidence            9999999999864          246788899999999999999998   999999999999999999999999999875


Q ss_pred             ccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCC
Q 002875          754 TQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       754 ~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      .......    ...+...|.+||......++.++|||||||++||++| |+.||.......   ..........   ...
T Consensus       167 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~---~~~~~~~~~~---~~~  240 (280)
T cd05043         167 LFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFE---MAAYLKDGYR---LAQ  240 (280)
T ss_pred             ccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHH---HHHHHHcCCC---CCC
Confidence            4322111    1112234677888777778899999999999999999 887776432111   0010101000   100


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .   ......+.+++.+||..||++|||+.|+++.|+.+..
T Consensus       241 ~---~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         241 P---INCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             C---CcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            1   1123467889999999999999999999999987753

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=7.7e-34  Score=302.56  Aligned_cols=243  Identities=22%  Similarity=0.263  Sum_probs=187.6

Q ss_pred             hhhhccCCCCCceeeeecC------CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ....+|+|+||.||+|...      ++..||+|.+....  ...+.+.+|+..+++++||||++++++|.+++..++|||
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   88 (288)
T cd05050           9 YVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFE   88 (288)
T ss_pred             ecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEe
Confidence            7789999999999999853      57899999987542  235678889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC------------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC
Q 002875          684 YLPNGNLSEKIRT------------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE  739 (872)
Q Consensus       684 y~~~g~L~~~l~~------------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~  739 (872)
                      |+++|+|.+++..                        ..++.+++.++.|++.||+|||+.   +++||||||+||++++
T Consensus        89 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~p~nil~~~  165 (288)
T cd05050          89 YMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRNCLVGE  165 (288)
T ss_pred             cCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CeecccccHhheEecC
Confidence            9999999999963                        135677789999999999999998   9999999999999999


Q ss_pred             CCCeeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccc
Q 002875          740 NMEPHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPID  814 (872)
Q Consensus       740 ~~~~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~  814 (872)
                      ++.+|++|||++........    ........|.+||......++.++|||||||++|||+| |..||.+.....     
T Consensus       166 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~-----  240 (288)
T cd05050         166 NMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEE-----  240 (288)
T ss_pred             CCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH-----
Confidence            99999999999864322110    01111122667787777788899999999999999998 666765332111     


Q ss_pred             ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          815 GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                       ......+......+   .....++.+++.+||+.||++|||++|+++.|++
T Consensus       241 -~~~~~~~~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         241 -VIYYVRDGNVLSCP---DNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             -HHHHHhcCCCCCCC---CCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence             00111111101001   1223568889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=5.2e-34  Score=303.60  Aligned_cols=244  Identities=17%  Similarity=0.206  Sum_probs=188.9

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||++... +|+.||+|.+...  ....+.+.+|+.++++++||||+++++++..++..|+||||++++
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (286)
T cd06622           5 VLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAG   84 (286)
T ss_pred             hhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCC
Confidence            7889999999999999864 7999999998653  223457888999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc
Q 002875          689 NLSEKIRT-----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA  763 (872)
Q Consensus       689 ~L~~~l~~-----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~  763 (872)
                      +|.+++..     ..++.....++.|++.|+.|||+.+  +|+||||||+||+++.++.+|++|||++............
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  162 (286)
T cd06622          85 SLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH--NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNI  162 (286)
T ss_pred             CHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC--CEeeCCCCHHHEEECCCCCEEEeecCCcccccCCccccCC
Confidence            99999876     4678889999999999999999632  8999999999999999999999999998654322222222


Q ss_pred             cccccCchhhhccc------CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          764 KIAWTESGEFYNAM------KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       764 ~~~~~~~~e~~~~~------~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      +...+.+||.....      .++.++|||||||++|||+||+.||........   .............   ....+...
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~  236 (286)
T cd06622         163 GCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANI---FAQLSAIVDGDPP---TLPSGYSD  236 (286)
T ss_pred             CccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhH---HHHHHHHhhcCCC---CCCcccCH
Confidence            33346677766433      347789999999999999999999864322110   0011111111111   11122445


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+++.+||+.+|++||++++++++
T Consensus       237 ~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         237 DAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             HHHHHHHHHcccCcccCCCHHHHhcC
Confidence            67889999999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.9e-34  Score=318.59  Aligned_cols=247  Identities=15%  Similarity=0.090  Sum_probs=186.6

Q ss_pred             cCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          608 FNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      +.|.....+|+|+||.||+|.. .+++.||||...     ...+.+|++++++++|||||++++++...+..++||||+.
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-----~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~  243 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW-----YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR  243 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc-----ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC
Confidence            3455888999999999999986 457899999643     2235679999999999999999999999999999999995


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---  760 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---  760 (872)
                       |+|.+++..   ..+|.++..|+.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++........   
T Consensus       244 -~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~  319 (461)
T PHA03211        244 -SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFH  319 (461)
T ss_pred             -CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceecccccccccc
Confidence             799988864   368999999999999999999999   9999999999999999999999999998754322111   


Q ss_pred             -CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCC-CCccccccccccc-------ccc-------
Q 002875          761 -FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL-QNKPIDGLLGEMY-------NEN-------  824 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~-~~~~~~~~~~~~~-------~~~-------  824 (872)
                       ...++..|.+||+..+..++.++|||||||++|||++|+.+++..... ........+..++       +..       
T Consensus       320 ~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~  399 (461)
T PHA03211        320 YGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSR  399 (461)
T ss_pred             cccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchH
Confidence             122455678889888888899999999999999999988766533211 1000000000000       000       


Q ss_pred             --------------ccCCCCchH---HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 --------------EVGSSSSLQ---DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 --------------~~~~~~~~~---~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                    .......+.   .....+.+++.+||+.||++|||++|++++
T Consensus       400 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        400 LVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             HHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence                          000000111   112357789999999999999999999976

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=8.2e-34  Score=302.18  Aligned_cols=246  Identities=16%  Similarity=0.198  Sum_probs=185.8

Q ss_pred             hcCcchhhhccCCCCCceeeeecC------CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCee
Q 002875          607 SFNSTECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  678 (872)
                      .|.  ..+.+|+|+||.||+|...      .+..||||.++...  .....+.+|+..+++++||||+++++++.+.+..
T Consensus         7 ~~~--i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (288)
T cd05061           7 KIT--LLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPT   84 (288)
T ss_pred             Hce--eeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc
Confidence            355  7899999999999998642      35689999886432  2234577899999999999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhCC------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEc
Q 002875          679 YLLYDYLPNGNLSEKIRTK------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA  746 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~  746 (872)
                      |+||||+++|+|.++++..            ..+.....++.|++.|++|||+.   +|+||||||+||++++++.+|++
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~~~~L~  161 (288)
T cd05061          85 LVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIG  161 (288)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCCcEEEC
Confidence            9999999999999999642            13556788999999999999998   99999999999999999999999


Q ss_pred             cccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccc
Q 002875          747 EFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMY  821 (872)
Q Consensus       747 dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  821 (872)
                      |||+++........    ...+...|.+||......++.++|||||||++|||++ |..|+.... ...     ......
T Consensus       162 Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~-~~~-----~~~~~~  235 (288)
T cd05061         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS-NEQ-----VLKFVM  235 (288)
T ss_pred             cCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC-HHH-----HHHHHH
Confidence            99998743221111    1111233667787777778889999999999999999 455654321 110     001111


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          822 NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      +.......   ......+.+++.+|++.||++|||+.|+++.+++
T Consensus       236 ~~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~  277 (288)
T cd05061         236 DGGYLDQP---DNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKD  277 (288)
T ss_pred             cCCCCCCC---CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence            11101111   1123568899999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=1.3e-33  Score=297.46  Aligned_cols=247  Identities=15%  Similarity=0.192  Sum_probs=189.2

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      .|.  ..+.+|+|+||.||+|.. .+++.||+|.++.... ....+.+|+.+++.++||||+++++++...+..|+||||
T Consensus        10 ~~~--~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~   87 (267)
T cd06645          10 DFE--LIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEF   87 (267)
T ss_pred             HHH--HHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEec
Confidence            354  788999999999999985 5789999999875432 345677899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--C
Q 002875          685 LPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--S  760 (872)
Q Consensus       685 ~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~  760 (872)
                      +++|+|.+++..  ..++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++........  .
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~  164 (267)
T cd06645          88 CGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRK  164 (267)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccc
Confidence            999999999865  357888899999999999999999   999999999999999999999999999864432211  1


Q ss_pred             CcccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          761 FPAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      ...+...|.+||...   ...++.++||||+||++|||+||+.|+...........  .......+...   ........
T Consensus       165 ~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~  239 (267)
T cd06645         165 SFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFL--MTKSNFQPPKL---KDKMKWSN  239 (267)
T ss_pred             cccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHh--hhccCCCCCcc---cccCCCCH
Confidence            122445577888753   34577889999999999999999998864332111000  00000111100   00011224


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.+++.+|++.||++||++++++++
T Consensus       240 ~~~~li~~~l~~~P~~R~~~~~ll~~  265 (267)
T cd06645         240 SFHHFVKMALTKNPKKRPTAEKLLQH  265 (267)
T ss_pred             HHHHHHHHHccCCchhCcCHHHHhcC
Confidence            57789999999999999999998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=313.58  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=188.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCc----EEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGI----TVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~----~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ...+||.|+||.||||.. +.|+    +||||++...  .+...++.+|+-+|++++|||+++++|+|.... +.||++|
T Consensus       700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq~  778 (1177)
T KOG1025|consen  700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQL  778 (1177)
T ss_pred             hhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHHh
Confidence            567899999999999984 5554    7899988653  334778999999999999999999999998765 8999999


Q ss_pred             cCCCChHHHhhCCC---CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          685 LPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       685 ~~~g~L~~~l~~~~---~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      ||.|+|.++++...   .-...+.|++|||+||.|||.+   .+|||||-++|||+.+-..+||+|||+++.........
T Consensus       779 mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey  855 (1177)
T KOG1025|consen  779 MPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEY  855 (1177)
T ss_pred             cccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccCcccccc
Confidence            99999999998743   3455678999999999999999   99999999999999999999999999998765544332


Q ss_pred             cc-----cccccCchhhhcccCCcccccchhHHHHHHHHHcC-CCCCCCCCCCCCccccccccccccc-cccCCCCchHH
Q 002875          762 PA-----KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN-GRLTNAGSSLQNKPIDGLLGEMYNE-NEVGSSSSLQD  834 (872)
Q Consensus       762 ~~-----~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  834 (872)
                      ..     .+.|++. |.+....++.++|||||||.+||++|- .+|.+ +....+..      ..+.. .....++.   
T Consensus       856 ~~~~gK~pikwmal-e~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~-gi~~~eI~------dlle~geRLsqPpi---  924 (1177)
T KOG1025|consen  856 SAPGGKVPIKWMAL-ESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYD-GIPAEEIP------DLLEKGERLSQPPI---  924 (1177)
T ss_pred             cccccccCcHHHHH-HHhhccCCCchhhhhhhhhhHHHHHhcCCCccC-CCCHHHhh------HHHhccccCCCCCC---
Confidence            22     2333332 556677899999999999999999994 44544 22222111      11111 11122222   


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ..-++..++.+||..|+..||+++++...+.+|..
T Consensus       925 CtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ar  959 (1177)
T KOG1025|consen  925 CTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMAR  959 (1177)
T ss_pred             ccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhc
Confidence            33467788899999999999999999998877643

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.1e-34  Score=299.33  Aligned_cols=237  Identities=17%  Similarity=0.240  Sum_probs=179.0

Q ss_pred             hhccCCCCCceeeeecCC--------CcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          614 EEAARPQSAAGCKAVLPT--------GITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~--------g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      +.+|+|+||.||+|....        ...||+|.+.... ...+.+.+|+.+++.++|||||++++++..++..++||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            468999999999997522        3458899886433 2356778899999999999999999999998999999999


Q ss_pred             cCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC--------eeEcccccccc
Q 002875          685 LPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME--------PHLAEFGFKYL  753 (872)
Q Consensus       685 ~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~--------~ki~dfg~~~~  753 (872)
                      +++|+|.++++..   .++..+..++.|++.|++|||+.   +|+||||||+||+++.++.        +|++|||++..
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~  157 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISIT  157 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEecccccccc
Confidence            9999999999753   57888899999999999999998   9999999999999987765        59999998754


Q ss_pred             ccccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          754 TQLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                      ....  ....+...|.+||++.. ..++.++|||||||++|||++|+.++.........  .    ...... ...+.  
T Consensus       158 ~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~--~----~~~~~~-~~~~~--  226 (258)
T cd05078         158 VLPK--EILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKK--L----QFYEDR-HQLPA--  226 (258)
T ss_pred             cCCc--hhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHH--H----HHHHcc-ccCCC--
Confidence            3221  11122334667777654 45788899999999999999996554432211110  0    000110 00011  


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                       ....++.+++.+||+.||++|||++|+++.|+
T Consensus       227 -~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         227 -PKWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             -CCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence             11245778999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=9.5e-34  Score=300.80  Aligned_cols=243  Identities=14%  Similarity=0.113  Sum_probs=188.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||++.. .+|+.||||.+....    ...+.+.+|+.++++++|+||+++++++.+.+..++||||++
T Consensus         4 ~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   83 (285)
T cd05630           4 QYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMN   83 (285)
T ss_pred             eeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecC
Confidence            667899999999999985 578999999986532    123456789999999999999999999999999999999999


Q ss_pred             CCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-C
Q 002875          687 NGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-F  761 (872)
Q Consensus       687 ~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-~  761 (872)
                      +|+|.+++..    ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.++++|||++......... .
T Consensus        84 g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  160 (285)
T cd05630          84 GGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKG  160 (285)
T ss_pred             CCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccC
Confidence            9999998853    357788899999999999999998   9999999999999999999999999998654322211 1


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..+...|++||......++.++||||+||++|||++|+.||..........   ..............   ......+.+
T Consensus       161 ~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~  234 (285)
T cd05630         161 RVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKRE---EVERLVKEVQEEYS---EKFSPDARS  234 (285)
T ss_pred             CCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHH---HHHhhhhhhhhhcC---ccCCHHHHH
Confidence            124455778898887788999999999999999999999987533211100   00011110000001   112345778


Q ss_pred             HHHHcccCCCCCCCC-----HHHHHHH
Q 002875          842 VALLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      ++.+||+.||++|||     ++|++++
T Consensus       235 li~~~l~~~p~~R~s~~~~~~~~~~~h  261 (285)
T cd05630         235 LCKMLLCKDPKERLGCQGGGAREVKEH  261 (285)
T ss_pred             HHHHHhhcCHHHccCCCCCchHHHHcC
Confidence            899999999999999     8888763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=7.1e-34  Score=299.73  Aligned_cols=240  Identities=21%  Similarity=0.259  Sum_probs=185.3

Q ss_pred             hccCCCCCceeeeecCC-------CcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          615 EAARPQSAAGCKAVLPT-------GITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~~-------g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      .+|+|+||.||+|+..+       ++.||||.+....  .....+.+|+.++++++||||++++++|...+..++||||+
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELM   81 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEecc
Confidence            58999999999998532       3579999886543  34567888999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCC---------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-----CeeEcccccc
Q 002875          686 PNGNLSEKIRTK---------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-----EPHLAEFGFK  751 (872)
Q Consensus       686 ~~g~L~~~l~~~---------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-----~~ki~dfg~~  751 (872)
                      ++|+|.++++..         .++.+...++.|++.|++|||+.   +++|+||||+||+++.+.     .+|++|||++
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~  158 (269)
T cd05044          82 EGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA  158 (269)
T ss_pred             CCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEECCcccc
Confidence            999999998641         46788899999999999999998   999999999999999877     8999999998


Q ss_pred             ccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccccc
Q 002875          752 YLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       752 ~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      +........    .......|.+||+.....++.++|||||||++|||+| |+.||........      ...+......
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~------~~~~~~~~~~  232 (269)
T cd05044         159 RDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEV------LQHVTAGGRL  232 (269)
T ss_pred             cccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHH------HHHHhcCCcc
Confidence            654221111    1111234677888877788999999999999999998 8877754321110      0000000001


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      ...   ......+.+++.+||+.+|.+||+++++.+.|++
T Consensus       233 ~~~---~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         233 QKP---ENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             CCc---ccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            111   1233567799999999999999999999999863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=6.4e-34  Score=302.28  Aligned_cols=243  Identities=14%  Similarity=0.124  Sum_probs=187.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||.++....    ..+.+.+|++++++++|+||+++.+++.+++..++||||++
T Consensus         4 ~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   83 (285)
T cd05632           4 QYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMN   83 (285)
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEecc
Confidence            567899999999999986 5799999999975321    23456789999999999999999999999999999999999


Q ss_pred             CCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CC
Q 002875          687 NGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SF  761 (872)
Q Consensus       687 ~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~  761 (872)
                      +|+|.+++..    ..++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++........ ..
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  160 (285)
T cd05632          84 GGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRG  160 (285)
T ss_pred             CccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccC
Confidence            9999988854    357888999999999999999998   999999999999999999999999999865432211 11


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..+...+.+||+..+..++.++||||+||++|||+||..||.........  ........... ....   ......+.+
T Consensus       161 ~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~--~~~~~~~~~~~-~~~~---~~~~~~~~~  234 (285)
T cd05632         161 RVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKR--EEVDRRVLETE-EVYS---AKFSEEAKS  234 (285)
T ss_pred             CCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHhhhccc-cccC---ccCCHHHHH
Confidence            22445577888887778889999999999999999999998754321100  00001111110 0001   122345678


Q ss_pred             HHHHcccCCCCCCCC-----HHHHHHH
Q 002875          842 VALLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      ++..|++.||++||+     ++|++++
T Consensus       235 li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05632         235 ICKMLLTKDPKQRLGCQEEGAGEVKRH  261 (285)
T ss_pred             HHHHHccCCHhHcCCCcccChHHHHcC
Confidence            899999999999999     6677654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=1.4e-33  Score=296.66  Aligned_cols=242  Identities=17%  Similarity=0.247  Sum_probs=188.9

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccc-------hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA-------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|.|+||.||+|...+|+.||||.++...       ...+.+.+|++++++++|+||++++++|.+.+..++||||
T Consensus         4 ~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   83 (265)
T cd06631           4 KGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEF   83 (265)
T ss_pred             ccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEec
Confidence            667899999999999998899999999986432       1234578899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC----
Q 002875          685 LPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD----  758 (872)
Q Consensus       685 ~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~----  758 (872)
                      +++|+|.+++.+  ..++.....++.|++.|++|+|+.   +|+|+||||+||++++++.+|++|||++.......    
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  160 (265)
T cd06631          84 VPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGT  160 (265)
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhhhhcccccc
Confidence            999999999975  346778889999999999999998   99999999999999999999999999886432111    


Q ss_pred             ----CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          759 ----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       759 ----~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                          .....+...+.+||+.....++.++||||+||++|||+||..||....................+  .  .   ..
T Consensus       161 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~--~---~~  233 (265)
T cd06631         161 HSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPR--L--P---DS  233 (265)
T ss_pred             ccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCC--C--C---CC
Confidence                01112344577888887777888999999999999999999998643221110000000000000  0  1   11


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.+++.+||+.+|++||+++|++++
T Consensus       234 ~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  262 (265)
T cd06631         234 FSAAAIDFVTSCLTRDQHERPSALQLLRH  262 (265)
T ss_pred             CCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            23457789999999999999999998753

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-33  Score=293.70  Aligned_cols=241  Identities=20%  Similarity=0.253  Sum_probs=187.5

Q ss_pred             hhccCCCCCceeeeecCCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          614 EEAARPQSAAGCKAVLPTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      +.+|+|+||.||++...+|+.||+|.++....  ..+.+.+|++++++++||||+++++++.+.+..++||||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            36899999999999987799999999875432  4567889999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC----Cccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS----FPAK  764 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~----~~~~  764 (872)
                      +++..   ..++.....++.+++.|++|||+.   +++||||||+||+++.++.+||+|||+++........    ....
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~  157 (251)
T cd05041          81 TFLRKKKNRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQI  157 (251)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcc
Confidence            99964   347788889999999999999999   9999999999999999999999999998654321111    0111


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||...+..++.++|||||||++|||+| |..|+..... ..  ..........   ...+   .....++.+++
T Consensus       158 ~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~-~~--~~~~~~~~~~---~~~~---~~~~~~~~~li  228 (251)
T cd05041         158 PIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSN-QQ--TRERIESGYR---MPAP---QLCPEEIYRLM  228 (251)
T ss_pred             eeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCH-HH--HHHHHhcCCC---CCCC---ccCCHHHHHHH
Confidence            223667887777778899999999999999999 5555543221 10  0000100000   0001   12234688899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .+|++.+|.+|||++|+++.|++
T Consensus       229 ~~~l~~~p~~Rp~~~ell~~l~~  251 (251)
T cd05041         229 LQCWAYDPENRPSFSEIYNELQI  251 (251)
T ss_pred             HHHhccChhhCcCHHHHHHHhhC
Confidence            99999999999999999998863

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=3.1e-34  Score=316.64  Aligned_cols=248  Identities=18%  Similarity=0.200  Sum_probs=185.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCC-----eeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-----QAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----~~~lv~  682 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|+++++.++||||+++++++..++     ..|+||
T Consensus         4 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~   83 (372)
T cd07853           4 PDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVT   83 (372)
T ss_pred             ccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEe
Confidence            778899999999999986 57999999998642   223456788999999999999999999998776     789999


Q ss_pred             cccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          683 DYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       683 ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      ||+. ++|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........
T Consensus        84 e~~~-~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~  159 (372)
T cd07853          84 ELMQ-SDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESK  159 (372)
T ss_pred             eccc-cCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceeecccCccc
Confidence            9997 588888764  357888899999999999999999   9999999999999999999999999998754322111


Q ss_pred             ---CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-ccc---------------cc-
Q 002875          761 ---FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GLL---------------GE-  819 (872)
Q Consensus       761 ---~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~~---------------~~-  819 (872)
                         ...+..+|.+||...+ ..++.++||||+||++|||+||+.||.+.......... ...               .. 
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~  239 (372)
T cd07853         160 HMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAH  239 (372)
T ss_pred             cCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHH
Confidence               1123455778887755 34788899999999999999999998754321100000 000               00 


Q ss_pred             ccccc-ccCCC----CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          820 MYNEN-EVGSS----SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       820 ~~~~~-~~~~~----~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..... ..+..    ........++.+++.+|++.||++|||++|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         240 ILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence            00000 00000    0001123467899999999999999999999875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-34  Score=253.73  Aligned_cols=248  Identities=20%  Similarity=0.271  Sum_probs=187.4

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh---HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...++||+|+||.||||+. .+++.||+|++......   .....+||-+++.++|+|||+++++..++...-+|+|||.
T Consensus         5 dkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cd   84 (292)
T KOG0662|consen    5 DKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCD   84 (292)
T ss_pred             HHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhh
Confidence            3788999999999999985 67899999999764332   4567889999999999999999999999999999999997


Q ss_pred             CCChHHHhh---CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCc-
Q 002875          687 NGNLSEKIR---TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFP-  762 (872)
Q Consensus       687 ~g~L~~~l~---~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~-  762 (872)
                      . +|..+..   ...+.+....++.|+++|+.|+|++   .+.|||+||+|.+|+.+|+.|++|||+++.......... 
T Consensus        85 q-dlkkyfdslng~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafgipvrcysa  160 (292)
T KOG0662|consen   85 Q-DLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSA  160 (292)
T ss_pred             H-HHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcCCceEeeec
Confidence            6 7877654   3456777788999999999999999   999999999999999999999999999987665443332 


Q ss_pred             -ccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC----------------cccccccccccccc
Q 002875          763 -AKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN----------------KPIDGLLGEMYNEN  824 (872)
Q Consensus       763 -~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~----------------~~~~~~~~~~~~~~  824 (872)
                       .-+-||.||.+.-+ .-|++..|+||.|||+.|+.-.++|.+.+.+..+                |+-...+.+. .+.
T Consensus       161 evvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdy-k~y  239 (292)
T KOG0662|consen  161 EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDY-KPY  239 (292)
T ss_pred             eeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCC-ccc
Confidence             24668888876654 4578889999999999999887777654433221                1111111111 111


Q ss_pred             cc-CCCCchHHHH----HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EV-GSSSSLQDEI----KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~-~~~~~~~~~~----~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +. +....+.+.+    ..-.++..+.+.-+|.+|.++++++++
T Consensus       240 p~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqh  283 (292)
T KOG0662|consen  240 PIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQH  283 (292)
T ss_pred             CCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcC
Confidence            00 0011122222    234667777777799999999998865

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.8e-34  Score=297.64  Aligned_cols=241  Identities=16%  Similarity=0.180  Sum_probs=189.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc------hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|++|.||+|.. .+|+.||+|.+....      ...+.+.+|++++++++||||+++++++.+++..++||||
T Consensus         6 ~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   85 (263)
T cd06625           6 RGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEY   85 (263)
T ss_pred             ccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEE
Confidence            788999999999999985 578999999986432      1235678899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          685 LPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       685 ~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      +++|+|.+++..  ..+......++.|++.|++|||+.   +|+||||||+||++++++.+||+|||+++.......   
T Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~  162 (263)
T cd06625          86 MPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGT  162 (263)
T ss_pred             CCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceeccccccccc
Confidence            999999999875  346777889999999999999998   999999999999999999999999999865432111   


Q ss_pred             --CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          760 --SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       760 --~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                        ....+..+|.+||...+..++.++||||+||++|||+||+.||.+.......  ..   ...... .  .........
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~--~~---~~~~~~-~--~~~~~~~~~  234 (263)
T cd06625         163 GMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAI--FK---IATQPT-N--PQLPSHVSP  234 (263)
T ss_pred             cccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHH--HH---HhccCC-C--CCCCccCCH
Confidence              1112344578888887777889999999999999999999998643221100  00   000000 0  001112234


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.+++.+||..+|.+|||++|++++
T Consensus       235 ~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         235 DARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             HHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            57788999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-34  Score=291.55  Aligned_cols=239  Identities=18%  Similarity=0.171  Sum_probs=189.3

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|.|++|-.|. +-+|..||||++.+.+.   ....+.+|++.|+-++|||||++|++..++...|||+|.-.+
T Consensus        22 LekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~  101 (864)
T KOG4717|consen   22 LEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDG  101 (864)
T ss_pred             hhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCC
Confidence            67889999999998886 57999999999976443   355667889999999999999999999999999999999999


Q ss_pred             CChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-CCCCeeEccccccccccccCC-CCc
Q 002875          688 GNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHLAEFGFKYLTQLADG-SFP  762 (872)
Q Consensus       688 g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-~~~~~ki~dfg~~~~~~~~~~-~~~  762 (872)
                      |+|+|||.++   +...-..+++.||..|+.|+|+.   .+||||+||+||.+. +-|.+|+.|||++..+..... ...
T Consensus       102 GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~Ts  178 (864)
T KOG4717|consen  102 GDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTS  178 (864)
T ss_pred             chHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcc
Confidence            9999999763   45666788999999999999999   899999999998775 568899999999865543322 122


Q ss_pred             ccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ++.-.|.+||+.-+..| .+++||||+|||+|-++.|+.||..+.+.+...      .+.+...    ....-...++.+
T Consensus       179 CGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLT------mImDCKY----tvPshvS~eCrd  248 (864)
T KOG4717|consen  179 CGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLT------MIMDCKY----TVPSHVSKECRD  248 (864)
T ss_pred             cchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhh------hhhcccc----cCchhhhHHHHH
Confidence            33333666777665544 467899999999999999999999776543221      1222211    111234567889


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++..|++.||.+|.+.+|++..
T Consensus       249 LI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  249 LIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             HHHHHHhcCchhhccHHHHhcc
Confidence            9999999999999999999753

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=1.5e-34  Score=303.23  Aligned_cols=247  Identities=22%  Similarity=0.263  Sum_probs=189.6

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHH---HHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~---~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...+.||+|+||.||++.. .+++.||+|++........   ...+|+..+++++||||+++++++.+.+..++||||++
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~   81 (260)
T PF00069_consen    2 RLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCP   81 (260)
T ss_dssp             EEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEET
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccc
Confidence            3678899999999999996 4567899999986544322   33458999999999999999999999999999999999


Q ss_pred             CCChHHHhh--CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc--cCCCCc
Q 002875          687 NGNLSEKIR--TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL--ADGSFP  762 (872)
Q Consensus       687 ~g~L~~~l~--~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~--~~~~~~  762 (872)
                      +++|.+++.  ...++.++..++.|+++||+|||+.   +|+||||||+||+++.++.++|+|||.+.....  ......
T Consensus        82 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~  158 (260)
T PF00069_consen   82 GGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPF  158 (260)
T ss_dssp             TEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSS
T ss_pred             cccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence            999999997  4568899999999999999999999   999999999999999999999999999864211  111122


Q ss_pred             ccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          763 AKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       763 ~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      .+...+.+||... ....+.++||||+|+++|||++|..|+........   .........................+.+
T Consensus       159 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (260)
T PF00069_consen  159 VGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQ---LEIIEKILKRPLPSSSQQSREKSEELRD  235 (260)
T ss_dssp             SSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHH---HHHHHHHHHTHHHHHTTSHTTSHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhh---hhhhhhcccccccccccccchhHHHHHH
Confidence            2445678888887 77889999999999999999999998875410000   0000000000000000000111257889


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++..||+.||++||+++|++++
T Consensus       236 li~~~l~~~p~~R~~~~~l~~~  257 (260)
T PF00069_consen  236 LIKKMLSKDPEQRPSAEELLKH  257 (260)
T ss_dssp             HHHHHSSSSGGGSTTHHHHHTS
T ss_pred             HHHHHccCChhHCcCHHHHhcC
Confidence            9999999999999999999864

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2e-33  Score=296.07  Aligned_cols=242  Identities=17%  Similarity=0.175  Sum_probs=184.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ....+|+|+||.||+|+. .++..||+|.+.... ...+.+.+|++++++++||||+++++++..++..++||||+++++
T Consensus        12 ~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   91 (268)
T cd06624          12 ERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGS   91 (268)
T ss_pred             ceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCC
Confidence            557899999999999985 567899999987543 345678899999999999999999999999999999999999999


Q ss_pred             hHHHhhCC---C--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccccCCC--C
Q 002875          690 LSEKIRTK---R--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQLADGS--F  761 (872)
Q Consensus       690 L~~~l~~~---~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~~~~~--~  761 (872)
                      |.++++..   .  ++.....++.|++.|++|||+.   +|+||||||+||+++. ++.+||+|||.+.........  .
T Consensus        92 L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~  168 (268)
T cd06624          92 LSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTET  168 (268)
T ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCcccc
Confidence            99999752   2  5677788999999999999998   9999999999999986 678999999998654321111  1


Q ss_pred             cccccccCchhhhccc--CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAM--KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~--~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ..+...|.+||+....  .++.++|||||||++|||+||+.|+.............   ......    .........++
T Consensus       169 ~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~  241 (268)
T cd06624         169 FTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKV---GMFKIH----PEIPESLSAEA  241 (268)
T ss_pred             CCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhh---hhhccC----CCCCcccCHHH
Confidence            1233346677876443  36788999999999999999999886432211100000   000000    00111233457


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||+.+|++|||++|++++
T Consensus       242 ~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         242 KNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             HHHHHHHcCCCchhCCCHHHHHhC
Confidence            788999999999999999999864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=9.3e-34  Score=302.51  Aligned_cols=243  Identities=17%  Similarity=0.235  Sum_probs=191.6

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ...+.+|.|++|.||+|+. .+|+.||||.+.... ...+.+.+|++++++++||||+++++++...+..|+||||+++|
T Consensus        22 ~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  101 (296)
T cd06655          22 TRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGG  101 (296)
T ss_pred             EEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCC
Confidence            3778899999999999985 689999999986533 34567788999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          689 NLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       689 ~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      +|.+++.. ..++.++..++.|++.|++|||+.   +++||||||+||+++.++.+||+|||++........  ....+.
T Consensus       102 ~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  178 (296)
T cd06655         102 SLTDVVTETCMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGT  178 (296)
T ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCC
Confidence            99999876 358899999999999999999999   999999999999999999999999998765432211  112244


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||......++.++|||||||++|||+||+.||..........      ...... .............+.+++.+
T Consensus       179 ~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~li~~  251 (296)
T cd06655         179 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY------LIATNG-TPELQNPEKLSPIFRDFLNR  251 (296)
T ss_pred             ccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH------HHHhcC-CcccCCcccCCHHHHHHHHH
Confidence            45778888777778889999999999999999999987543211100      000000 00001111223457788999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.||++|||+++++++
T Consensus       252 ~l~~dp~~Rpt~~~il~~  269 (296)
T cd06655         252 CLEMDVEKRGSAKELLQH  269 (296)
T ss_pred             HhhcChhhCCCHHHHhhC
Confidence            999999999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=6.6e-34  Score=307.41  Aligned_cols=233  Identities=16%  Similarity=0.132  Sum_probs=181.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ....||+|+||.||+|.. .+|+.||||++....    ...+.+..|+.+++.+. |++|+++++++.+.+..|+||||+
T Consensus         4 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~   83 (323)
T cd05615           4 FLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYV   83 (323)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCC
Confidence            678899999999999985 578999999997532    22345667788888775 577888999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      ++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++......  ...
T Consensus        84 ~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~  160 (323)
T cd05615          84 NGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRT  160 (323)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccccccccCCCCccccC
Confidence            99999999875  457888999999999999999998   99999999999999999999999999986532211  112


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||+.||.......      ....+.... ...+   .....++.+
T Consensus       161 ~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~------~~~~i~~~~-~~~p---~~~~~~~~~  230 (323)
T cd05615         161 FCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDE------LFQSIMEHN-VSYP---KSLSKEAVS  230 (323)
T ss_pred             ccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCC-CCCC---ccCCHHHHH
Confidence            224456778898888788899999999999999999999987543211      111111111 1111   112345778


Q ss_pred             HHHHcccCCCCCCCCH
Q 002875          842 VALLCTRSTPSDRPSM  857 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~  857 (872)
                      ++.+|++.||++|++.
T Consensus       231 li~~~l~~~p~~R~~~  246 (323)
T cd05615         231 ICKGLMTKHPSKRLGC  246 (323)
T ss_pred             HHHHHcccCHhhCCCC
Confidence            9999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.6e-33  Score=303.68  Aligned_cols=248  Identities=21%  Similarity=0.268  Sum_probs=188.9

Q ss_pred             hcCcchhhhccCCCCCceeeeec--------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecC
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL--------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR  675 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~--------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~  675 (872)
                      .|.  ..+.+|+|+||.||+|..        ..+..||+|.++...  .....+.+|+++++++ +|||||+++++|.+.
T Consensus        13 ~~~--~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          13 RLV--LGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             Hee--eeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            355  788999999999999863        235679999987532  2345678899999999 699999999999999


Q ss_pred             CeeEEEEcccCCCChHHHhhC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee
Q 002875          676 HQAYLLYDYLPNGNLSEKIRT------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF  737 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill  737 (872)
                      +..|+||||+++|+|.+++..                  ..++.+...++.|++.||+|||+.   +|+||||||+||++
T Consensus        91 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill  167 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAARNVLV  167 (314)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeeccccceeEEE
Confidence            999999999999999999854                  246778889999999999999998   99999999999999


Q ss_pred             CCCCCeeEccccccccccccCC---CCc-ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcc
Q 002875          738 DENMEPHLAEFGFKYLTQLADG---SFP-AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKP  812 (872)
Q Consensus       738 ~~~~~~ki~dfg~~~~~~~~~~---~~~-~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~  812 (872)
                      +.++.+|++|||+++.......   ... .....|++||......++.++|||||||++|||+| |..||..... ..  
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~-~~--  244 (314)
T cd05099         168 TEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV-EE--  244 (314)
T ss_pred             cCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCH-HH--
Confidence            9999999999999875432111   111 11123677888777778889999999999999999 6666643211 10  


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                         .............+   .....++.+++.+||+.||++|||+.|+++.|+++.
T Consensus       245 ---~~~~~~~~~~~~~~---~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~  294 (314)
T cd05099         245 ---LFKLLREGHRMDKP---SNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVL  294 (314)
T ss_pred             ---HHHHHHcCCCCCCC---CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence               00000011000001   122345778999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=2.6e-33  Score=298.32  Aligned_cols=249  Identities=14%  Similarity=0.164  Sum_probs=187.0

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEe-----cCC
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCY-----NRH  676 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~-----~~~  676 (872)
                      ..+.|.  ..+.||+|+||.||+|.. .+|+.||+|.++......+.+.+|+.+++++ +||||++++++|.     ..+
T Consensus        16 ~~~~~~--~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~   93 (286)
T cd06638          16 PSDTWE--IIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGD   93 (286)
T ss_pred             ccccee--eeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCC
Confidence            334555  788999999999999986 5688999999875444456678899999998 6999999999884     345


Q ss_pred             eeEEEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                      ..++||||+++|+|.+++..      ..++.....++.|+++|+.|||+.   +|+||||||+||++++++.+|++|||+
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~kl~dfg~  170 (286)
T cd06638          94 QLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEGGVKLVDFGV  170 (286)
T ss_pred             eEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCCCEEEccCCc
Confidence            78999999999999998752      346677888999999999999998   999999999999999999999999999


Q ss_pred             cccccccC--CCCcccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccc
Q 002875          751 KYLTQLAD--GSFPAKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE  823 (872)
Q Consensus       751 ~~~~~~~~--~~~~~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  823 (872)
                      +.......  .....+...|.+||+..     ...++.++||||+||++|||+||+.|+..........  . ......+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~--~-~~~~~~~  247 (286)
T cd06638         171 SAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALF--K-IPRNPPP  247 (286)
T ss_pred             eeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHh--h-ccccCCC
Confidence            86543211  11122344466777653     2346788999999999999999999987543211110  0 0000000


Q ss_pred             cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      . ...+.   ....++.+++.+||+.||++|||++|++++.
T Consensus       248 ~-~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         248 T-LHQPE---LWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             c-ccCCC---CcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence            0 00011   1123577899999999999999999999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=2.1e-33  Score=295.63  Aligned_cols=241  Identities=16%  Similarity=0.195  Sum_probs=172.5

Q ss_pred             hccCCCCCceeeeecCCCc---EEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          615 EAARPQSAAGCKAVLPTGI---TVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~~g~---~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      +||+|+||.||+|...++.   .+++|.++...  ...+.+.+|+..+++++|||||+++++|.+....|+||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            5899999999999764443   46677665432  345678899999999999999999999999999999999999999


Q ss_pred             hHHHhhCC------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC----C
Q 002875          690 LSEKIRTK------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD----G  759 (872)
Q Consensus       690 L~~~l~~~------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~----~  759 (872)
                      |.+++++.      .++.....++.|+++||+|||+.   +|+||||||+||+++.++.+|++|||++.......    .
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  158 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETE  158 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccCcchhhhcc
Confidence            99999752      23455678999999999999998   99999999999999999999999999875321111    1


Q ss_pred             CCcccccccCchhhhcc-------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc---ccccccccccccCCC
Q 002875          760 SFPAKIAWTESGEFYNA-------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID---GLLGEMYNENEVGSS  829 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~-------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  829 (872)
                      ....+...|.+||+...       ..++.++|||||||++|||+|++.+++...........   .......++.     
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----  233 (268)
T cd05086         159 DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQ-----  233 (268)
T ss_pred             cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCc-----
Confidence            11112233566776532       23467899999999999999865544322211110000   0000111111     


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                       ........+.+++..|| .+|++||+++|+++.|.
T Consensus       234 -~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         234 -LELPYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             -cCCCCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence             01112245667788899 67999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=2.2e-33  Score=293.65  Aligned_cols=242  Identities=16%  Similarity=0.210  Sum_probs=191.3

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...+.+|.|+||.||.+.. .+|+.||+|.+...   ....+.+.+|++++++++|+||+++++++.+.+..++||||++
T Consensus         3 ~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~   82 (256)
T cd08221           3 IPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYAN   82 (256)
T ss_pred             eEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecC
Confidence            4778999999999988874 67889999998643   2345667899999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--C
Q 002875          687 NGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--S  760 (872)
Q Consensus       687 ~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~  760 (872)
                      +|+|.+++...    .++.+...++.|+++|++|||+.   +++||||||+||++++++.+||+|||++........  .
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~  159 (256)
T cd08221          83 GGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAE  159 (256)
T ss_pred             CCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEccccccccc
Confidence            99999999763    57788899999999999999998   999999999999999999999999999865432221  1


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+...|.+||...+..++.++|||||||++|||++|+.||.......      ....+......   +.......++.
T Consensus       160 ~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~  230 (256)
T cd08221         160 TVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLN------LVVKIVQGNYT---PVVSVYSSELI  230 (256)
T ss_pred             ccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHcCCCC---CCccccCHHHH
Confidence            1223455778888777778889999999999999999999886433211      01111111101   11122335677


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      +++.+||..+|++||+++|+++++
T Consensus       231 ~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         231 SLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             HHHHHHcccCcccCCCHHHHhhCc
Confidence            899999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.8e-33  Score=304.18  Aligned_cols=187  Identities=21%  Similarity=0.272  Sum_probs=151.1

Q ss_pred             hhhccCCCCCceeeeecC---CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEec--CCeeEEEEcccCC
Q 002875          613 CEEAARPQSAAGCKAVLP---TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN  687 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~---~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lv~ey~~~  687 (872)
                      ...+|+|+||.||+|...   +++.||||.+..... ...+.+|++++++++|||||++++++..  +...|+||||++ 
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-   83 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI-SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-   83 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC-cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-
Confidence            468999999999999853   568899999864322 3456789999999999999999999864  457899999996 


Q ss_pred             CChHHHhhC-----------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee----CCCCCeeEccccccc
Q 002875          688 GNLSEKIRT-----------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF----DENMEPHLAEFGFKY  752 (872)
Q Consensus       688 g~L~~~l~~-----------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill----~~~~~~ki~dfg~~~  752 (872)
                      ++|.+++..           ..++.....++.|++.||+|||+.   +|+||||||+||++    +.++.+||+|||+++
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07868          84 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCcee
Confidence            588887742           246677789999999999999999   99999999999999    456789999999997


Q ss_pred             cccccCC-----CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCC
Q 002875          753 LTQLADG-----SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNA  804 (872)
Q Consensus       753 ~~~~~~~-----~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~  804 (872)
                      .......     ....++.+|.+||+..+ ..++.++||||+||++|||+||+.||..
T Consensus       161 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         161 LFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             ccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            6432211     11224556788887755 4578889999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.1e-33  Score=298.90  Aligned_cols=248  Identities=19%  Similarity=0.201  Sum_probs=188.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~ey~~  686 (872)
                      ..+.+|.|++|.||++.. .+++.||+|.+....  ...+.+.+|++++++++||||++++++|.+.  +..|+||||++
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~   84 (287)
T cd06621           5 ELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCE   84 (287)
T ss_pred             EEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecC
Confidence            778899999999999997 568899999987542  2456788899999999999999999998653  47899999999


Q ss_pred             CCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          687 NGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       687 ~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      +|+|.+++..      ..+......++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||++.........
T Consensus        85 ~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~  161 (287)
T cd06621          85 GGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAG  161 (287)
T ss_pred             CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeeccccccccccccc
Confidence            9999988653      246677789999999999999998   9999999999999999999999999998654322222


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc--ccC-CCCchHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN--EVG-SSSSLQDEIK  837 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~  837 (872)
                      ...+...|.+||......++.++||||+||++|||+||+.|+.......... ...........  ... ..........
T Consensus       162 ~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (287)
T cd06621         162 TFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGP-IELLSYIVNMPNPELKDEPGNGIKWSE  240 (287)
T ss_pred             cccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCCh-HHHHHHHhcCCchhhccCCCCCCchHH
Confidence            2223445677888777788899999999999999999999987553211111 01111111100  000 0110012345


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.+++.+||+.+|++|||+.|++++
T Consensus       241 ~~~~li~~~l~~~p~~Rpt~~eil~~  266 (287)
T cd06621         241 EFKDFIKQCLEKDPTRRPTPWDMLEH  266 (287)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHhC
Confidence            67899999999999999999999874

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-34  Score=304.77  Aligned_cols=239  Identities=18%  Similarity=0.277  Sum_probs=188.8

Q ss_pred             hhhhccCCCCCceeeeec--CCCc--EEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL--PTGI--TVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--~~g~--~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..++||+|.||+|.+|..  +.|+  .||||.++.+..  ....|.+|+.+|-+++|||+|+|||+..+ ...++|||.+
T Consensus       114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELa  192 (1039)
T KOG0199|consen  114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELA  192 (1039)
T ss_pred             HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhc
Confidence            568999999999999985  4555  689999986543  46789999999999999999999999988 6789999999


Q ss_pred             CCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          686 PNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      +.|||.+.|++.    .-......++.|||.||+||.++   +.||||+..+|+|+...-.+||+|||+.+.....+..+
T Consensus       193 plGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Y  269 (1039)
T KOG0199|consen  193 PLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMY  269 (1039)
T ss_pred             ccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccCCCCcce
Confidence            999999999872    23456678999999999999999   99999999999999999999999999988765544332


Q ss_pred             ------cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          762 ------PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       762 ------~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                            ...++|. +||.+...+++.++|||+|||.+|||+|++.-+|.+..-.     ..+..+-+......+   +.+
T Consensus       270 vm~p~rkvPfAWC-aPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~-----qIL~~iD~~erLpRP---k~c  340 (1039)
T KOG0199|consen  270 VMAPQRKVPFAWC-APESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGI-----QILKNIDAGERLPRP---KYC  340 (1039)
T ss_pred             EecCCCcCccccc-CHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHH-----HHHHhccccccCCCC---CCC
Confidence                  2245544 5688888999999999999999999999875444332211     111111111112222   345


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+++..||..+|++|||+..+.+.
T Consensus       341 sedIY~imk~cWah~paDRptFsair~~  368 (1039)
T KOG0199|consen  341 SEDIYQIMKNCWAHNPADRPTFSAIRED  368 (1039)
T ss_pred             hHHHHHHHHHhccCCccccccHHHHHHh
Confidence            5678899999999999999999999743

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=2.2e-33  Score=297.99  Aligned_cols=243  Identities=16%  Similarity=0.168  Sum_probs=186.7

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|.|+||.||+|... ++..+|+|.+.... ...+.+.+|++++++++||||++++++|..++..|+||||+++|+
T Consensus         9 i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~   88 (282)
T cd06643           9 IIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGA   88 (282)
T ss_pred             HHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCc
Confidence            6788999999999999864 58889999987543 345677889999999999999999999999999999999999999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccc
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAK  764 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~  764 (872)
                      |.+++.+   ..++.++..++.|+++||+|||+.   +|+||||||+||+++.++.+|++|||++........  ....+
T Consensus        89 l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  165 (282)
T cd06643          89 VDAVMLELERPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIG  165 (282)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEccccccccccccccccccccc
Confidence            9998753   357888999999999999999998   999999999999999999999999999864322111  11123


Q ss_pred             ccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          765 IAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       765 ~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ...|.+||+..     ...++.++|||||||++|||++|+.||....... ... ... ....+. ...+   .....++
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~-~~~-~~~-~~~~~~-~~~~---~~~~~~~  238 (282)
T cd06643         166 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMR-VLL-KIA-KSEPPT-LAQP---SRWSSEF  238 (282)
T ss_pred             cccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHH-HHH-HHh-hcCCCC-CCCc---cccCHHH
Confidence            44567777652     3456778999999999999999998886433111 000 000 000000 0001   1123467


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .+++.+||+.||.+||++++++++-
T Consensus       239 ~~li~~~l~~~p~~Rp~~~~il~~~  263 (282)
T cd06643         239 KDFLKKCLEKNVDARWTTTQLLQHP  263 (282)
T ss_pred             HHHHHHHccCChhhCcCHHHHhcCC
Confidence            7899999999999999999998654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.5e-33  Score=300.46  Aligned_cols=249  Identities=19%  Similarity=0.208  Sum_probs=181.1

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhcc---CCCCceeEEEEEec-----CCee
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTV---RHKNLIRLLGFCYN-----RHQA  678 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l---~H~niv~l~~~~~~-----~~~~  678 (872)
                      ...+.||+|+||.||+|.. .+|+.||+|.++....   ....+.+|+++++++   +||||+++++++..     ....
T Consensus         3 ~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~   82 (288)
T cd07863           3 EPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKV   82 (288)
T ss_pred             eEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceE
Confidence            3778899999999999986 5789999999875321   123445666666654   79999999999864     2458


Q ss_pred             EEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ++||||++ ++|.+++..    ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        83 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~~~~~  158 (288)
T cd07863          83 TLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGLARIY  158 (288)
T ss_pred             EEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCccccc
Confidence            99999998 489888865    247888899999999999999999   9999999999999999999999999998754


Q ss_pred             cccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------ccccccc-
Q 002875          755 QLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGLL-  817 (872)
Q Consensus       755 ~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~~-  817 (872)
                      ...... ...+...|.+||...+..++.++||||+||++|||++|+.||........               +...... 
T Consensus       159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (288)
T cd07863         159 SCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLP  238 (288)
T ss_pred             cCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCccccccc
Confidence            322211 12234557788888777889999999999999999999888764322100               0000000 


Q ss_pred             ccccccccc-CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          818 GEMYNENEV-GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       818 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...+.+... ......++...++.+++.+|++.||++|||++|++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~h  285 (288)
T cd07863         239 RGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQH  285 (288)
T ss_pred             ccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            000000000 0000011233457799999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=2.2e-33  Score=293.22  Aligned_cols=239  Identities=22%  Similarity=0.282  Sum_probs=185.4

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|.. +|+.||+|.++... ..+.+.+|+.++++++||||+++++++..+ ..++||||+++|+|.
T Consensus        10 ~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~L~   86 (254)
T cd05083          10 LGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV-TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMSKGNLV   86 (254)
T ss_pred             eeeeeccCCCCceEeccc-CCCceEEEeecCcc-hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCCCCCHH
Confidence            788999999999999974 78899999986432 345678899999999999999999998764 479999999999999


Q ss_pred             HHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccccc
Q 002875          692 EKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAW  767 (872)
Q Consensus       692 ~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~  767 (872)
                      +++...    .++.++..++.|++.|++|||+.   +++||||||+||+++.++.+||+|||++........... ....
T Consensus        87 ~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~-~~~~  162 (254)
T cd05083          87 NFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSK-LPVK  162 (254)
T ss_pred             HHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceeccccCCCCC-CCce
Confidence            998652    47888899999999999999998   999999999999999999999999999865432211111 1233


Q ss_pred             cCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          768 TESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       768 ~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      |.+||+.....++.++|||||||++|||++ |..||..... ...  ...........   ..   ......+.+++.+|
T Consensus       163 y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-~~~--~~~~~~~~~~~---~~---~~~~~~~~~li~~~  233 (254)
T cd05083         163 WTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL-KEV--KECVEKGYRME---PP---EGCPADVYVLMTSC  233 (254)
T ss_pred             ecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH-HHH--HHHHhCCCCCC---CC---CcCCHHHHHHHHHH
Confidence            667787777778889999999999999998 6666653321 110  00010000000   01   12235677899999


Q ss_pred             ccCCCCCCCCHHHHHHHHcc
Q 002875          847 TRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~L~~  866 (872)
                      |+.+|++||+++++++.|++
T Consensus       234 l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         234 WETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             cCCChhhCcCHHHHHHHHcc
Confidence            99999999999999998863

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=7.9e-34  Score=329.44  Aligned_cols=246  Identities=17%  Similarity=0.199  Sum_probs=186.4

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEec--CCeeE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAY  679 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~  679 (872)
                      ..|.  ....||+|+||.||+|.. .+++.||+|.+...   ......+..|+.++++++|||||+++++|.+  .+.+|
T Consensus        13 ~~Ye--Il~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~ly   90 (1021)
T PTZ00266         13 NEYE--VIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLY   90 (1021)
T ss_pred             CCEE--EEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEE
Confidence            3455  889999999999999985 56778999998743   2335668889999999999999999998864  45789


Q ss_pred             EEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCC----CCcccCCCCCCCeeeCC----------
Q 002875          680 LLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCY----PAIPHGDLKASNIVFDE----------  739 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~----~~i~Hrdlk~~Nill~~----------  739 (872)
                      +||||+++|+|.++|..      ..++...+.|+.||+.||+|||+...    .+||||||||+|||++.          
T Consensus        91 IVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~  170 (1021)
T PTZ00266         91 ILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITA  170 (1021)
T ss_pred             EEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccc
Confidence            99999999999999864      46788889999999999999998521    25999999999999964          


Q ss_pred             -------CCCeeEccccccccccccCC-CCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCC
Q 002875          740 -------NMEPHLAEFGFKYLTQLADG-SFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ  809 (872)
Q Consensus       740 -------~~~~ki~dfg~~~~~~~~~~-~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~  809 (872)
                             ...+||+|||++........ ....++..|.+||++..  ..++.++||||||||+|||+||..||.......
T Consensus       171 ~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~  250 (1021)
T PTZ00266        171 QANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFS  250 (1021)
T ss_pred             cccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHH
Confidence                   23589999999876433221 12235566778887643  457889999999999999999999987543211


Q ss_pred             CccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          810 NKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      .     .+..+......+.    .....++.+++..||+.+|.+||++.|++.
T Consensus       251 q-----li~~lk~~p~lpi----~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        251 Q-----LISELKRGPDLPI----KGKSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             H-----HHHHHhcCCCCCc----CCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence            1     1111111110110    112345778999999999999999999984

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-35  Score=333.99  Aligned_cols=243  Identities=20%  Similarity=0.226  Sum_probs=191.0

Q ss_pred             chhhhccCCCCCceeeee-cCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      .....+|.|.||.||-|+ .++|+..|||-++...   .......+|..++..++|||+|+++|+-.+++..+|.||||+
T Consensus      1238 qrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~ 1317 (1509)
T KOG4645|consen 1238 QRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCE 1317 (1509)
T ss_pred             ccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhc
Confidence            366789999999999998 5789999999886432   234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---
Q 002875          687 NGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---  761 (872)
Q Consensus       687 ~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---  761 (872)
                      +|+|.+.+....  +..-...+..|++.|++|||++   +||||||||+||+|+.+|.+|.+|||.|..........   
T Consensus      1318 ~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~e 1394 (1509)
T KOG4645|consen 1318 GGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGE 1394 (1509)
T ss_pred             cCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeEecCchhcCCHH
Confidence            999999997653  3444456888999999999999   99999999999999999999999999987654432221   


Q ss_pred             ---cccccccCchhhhccc---CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          762 ---PAKIAWTESGEFYNAM---KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       762 ---~~~~~~~~~~e~~~~~---~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                         ..|++.|++||++.+.   ...-++||||+|||+.||+||++||..-+.....++..-++.      .  ++.....
T Consensus      1395 l~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh------~--Pq~P~~l 1466 (1509)
T KOG4645|consen 1395 LQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGH------K--PQIPERL 1466 (1509)
T ss_pred             HHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccC------C--CCCchhh
Confidence               2256667788877543   345568999999999999999999986554332222111111      1  1112235


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ..+..+++..|++.||++|.++.|++++=
T Consensus      1467 s~~g~dFle~Cl~~dP~~Rw~~~qlle~~ 1495 (1509)
T KOG4645|consen 1467 SSEGRDFLEHCLEQDPKMRWTASQLLEHA 1495 (1509)
T ss_pred             hHhHHHHHHHHHhcCchhhhHHHHHHHhh
Confidence            56778999999999999999999988763

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.4e-33  Score=313.05  Aligned_cols=246  Identities=15%  Similarity=0.103  Sum_probs=186.2

Q ss_pred             cchhhhccCCCCCceeeeec---CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          610 STECEEAARPQSAAGCKAVL---PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~---~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      |.....||+|+||.||++..   .+++.||||.+...    +...+|++++++++|||||++++++...+..|+||||+.
T Consensus        94 y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  169 (392)
T PHA03207         94 YNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK  169 (392)
T ss_pred             eEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC
Confidence            33888999999999999874   35678999988643    335678999999999999999999999999999999996


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC----
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS----  760 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~----  760 (872)
                       ++|.+++..  ..++.+.+.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........    
T Consensus       170 -~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~  245 (392)
T PHA03207        170 -CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCY  245 (392)
T ss_pred             -CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccCccccccccc
Confidence             689998854  458889999999999999999999   9999999999999999999999999998654322111    


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-cccc----------------------c
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-IDGL----------------------L  817 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-~~~~----------------------~  817 (872)
                      ...++..|.+||+.....++.++|||||||++|||+||+.||.+........ ....                      +
T Consensus       246 ~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  325 (392)
T PHA03207        246 GWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHF  325 (392)
T ss_pred             ccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHH
Confidence            1224556778898888888999999999999999999999997543211000 0000                      0


Q ss_pred             cccccc-c-ccCCCCch--HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          818 GEMYNE-N-EVGSSSSL--QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       818 ~~~~~~-~-~~~~~~~~--~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.... . ....++..  .....++.+++.+|+..||++|||+.|++++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        326 KQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             HhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence            000000 0 00000000  0112356688899999999999999999875

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.9e-34  Score=297.88  Aligned_cols=241  Identities=18%  Similarity=0.196  Sum_probs=187.7

Q ss_pred             cchhhhccCCCCCceeeeecCCCcEEEEEEeecc---chhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEccc
Q 002875          610 STECEEAARPQSAAGCKAVLPTGITVSVKKIEWG---ATRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      |+..+.||+|+.++|||+...+.+.||+|++...   ......+..||..|.+++ |.+||++++|-..++..||||||=
T Consensus       363 Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~G  442 (677)
T KOG0596|consen  363 YEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECG  442 (677)
T ss_pred             hhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeecc
Confidence            4489999999999999999999999999988642   334678999999999996 899999999999999999999987


Q ss_pred             CCCChHHHhhCCC----CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          686 PNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~~~----~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      + -||.++|+.+.    +| .++.+..||+.|+.++|.+   +|||.||||+|.|+-+ |.+||+|||+|........+.
T Consensus       443 d-~DL~kiL~k~~~~~~~~-~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlVk-G~LKLIDFGIA~aI~~DTTsI  516 (677)
T KOG0596|consen  443 D-IDLNKILKKKKSIDPDW-FLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLVK-GRLKLIDFGIANAIQPDTTSI  516 (677)
T ss_pred             c-ccHHHHHHhccCCCchH-HHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEEe-eeEEeeeechhcccCccccce
Confidence            5 59999998743    34 6678899999999999999   9999999999999874 789999999998776554332


Q ss_pred             ----cccccccCchhhhccc-----------CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccc-
Q 002875          762 ----PAKIAWTESGEFYNAM-----------KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENE-  825 (872)
Q Consensus       762 ----~~~~~~~~~~e~~~~~-----------~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~-  825 (872)
                          ..|+..|++||.+..+           +.+.++||||+|||+|+|+.|+.||.......     ..+..+.++.. 
T Consensus       517 ~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~-----aKl~aI~~P~~~  591 (677)
T KOG0596|consen  517 VKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQI-----AKLHAITDPNHE  591 (677)
T ss_pred             eeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHH-----HHHHhhcCCCcc
Confidence                2355557777755332           35677999999999999999999986432111     11223333311 


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +..+.....  .++++++..||+.||.+|||+.|++++
T Consensus       592 Iefp~~~~~--~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  592 IEFPDIPEN--DELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             ccccCCCCc--hHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            111111111  238899999999999999999999875

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.4e-34  Score=310.34  Aligned_cols=188  Identities=16%  Similarity=0.123  Sum_probs=157.0

Q ss_pred             cCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          608 FNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..|...+.+|+|+||.||+|+. .+++.||+|.....     ....|+.++++++|||||++++++.+.+..++||||+.
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~-----~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  140 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG-----TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS  140 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc-----ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC
Confidence            3455889999999999999986 46788999975432     23468899999999999999999999999999999995


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCc
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFP  762 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~  762 (872)
                       |+|.+++..   ..++.++..|+.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ...
T Consensus       141 -~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~  216 (357)
T PHA03209        141 -SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGL  216 (357)
T ss_pred             -CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCccccccccCcccccc
Confidence             689888854   357889999999999999999999   999999999999999999999999999864322111 112


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCC
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA  804 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~  804 (872)
                      .++..|.+||+..+..++.++|||||||++|||++++.++..
T Consensus       217 ~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~  258 (357)
T PHA03209        217 AGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFE  258 (357)
T ss_pred             cccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcccc
Confidence            245567788888777889999999999999999998776653

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=2.8e-33  Score=298.14  Aligned_cols=249  Identities=19%  Similarity=0.232  Sum_probs=188.2

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ....+|+|++|.||+|+.. +|+.||+|++....   ...+.+.+|++++++++||||+++++++...+..++||||+++
T Consensus         5 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~   84 (286)
T cd07847           5 KLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDH   84 (286)
T ss_pred             eeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCc
Confidence            6788999999999999875 68999999986432   2245678899999999999999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      ++|..++..  ..++.++..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.........  ...
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  161 (286)
T cd07847          85 TVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYV  161 (286)
T ss_pred             cHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCCCcccccCcc
Confidence            999888764  457888999999999999999998   9999999999999999999999999998754332211  112


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-c----c-------------ccccccccc
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-D----G-------------LLGEMYNEN  824 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~----~-------------~~~~~~~~~  824 (872)
                      +..++.+||...+ ..++.++|||||||++|||+||+.||.+......... .    .             .......+.
T Consensus       162 ~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (286)
T cd07847         162 ATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPE  241 (286)
T ss_pred             cccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCC
Confidence            3445677787654 4578899999999999999999988874432110000 0    0             000000000


Q ss_pred             ccCCCC---chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSS---SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~---~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +....+   ........+.+++.+||+.||++||++.|++.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~  283 (286)
T cd07847         242 PETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEH  283 (286)
T ss_pred             cccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcC
Confidence            000000   011223567899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=2.7e-33  Score=298.91  Aligned_cols=242  Identities=18%  Similarity=0.169  Sum_probs=186.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|.|+||.||+|.. .+|+.||+|.+..... ..+.+.+|++.+++++||||+++++++..++..|+||||+++|+
T Consensus        16 i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   95 (292)
T cd06644          16 IIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGA   95 (292)
T ss_pred             hhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCc
Confidence            788899999999999986 4689999999875433 35667889999999999999999999999999999999999999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Cccc
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPAK  764 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~~  764 (872)
                      |..++.+   ..++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++.........  ...+
T Consensus        96 l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  172 (292)
T cd06644          96 VDAIMLELDRGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIG  172 (292)
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccceeccccccccceecC
Confidence            9888753   357888999999999999999998   9999999999999999999999999987643221111  1123


Q ss_pred             ccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          765 IAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       765 ~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ...|.+||+..     ...++.++|||||||++|||+||+.|+........      .......... ..........++
T Consensus       173 ~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~  245 (292)
T cd06644         173 TPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV------LLKIAKSEPP-TLSQPSKWSMEF  245 (292)
T ss_pred             CccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHH------HHHHhcCCCc-cCCCCcccCHHH
Confidence            34567777653     33467789999999999999999988864332110      0011111000 001111223457


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||+.||++||+++|++++
T Consensus       246 ~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         246 RDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             HHHHHHHhcCCcccCcCHHHHhcC
Confidence            789999999999999999999864

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.8e-33  Score=296.81  Aligned_cols=248  Identities=17%  Similarity=0.168  Sum_probs=191.2

Q ss_pred             hhhhccCCCCCceeeeecCC----CcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLPT----GITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~----g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|...+    ...||||......  ...+.+.+|+.++++++||||++++++|.+ +..++||||+
T Consensus        10 ~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv~e~~   88 (270)
T cd05056          10 LGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIVMELA   88 (270)
T ss_pred             eeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEEEEcC
Confidence            67899999999999998643    3479999886543  345678899999999999999999999875 5678999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      ++|+|.+++..   ..++.++..++.|++.|++|+|+.   +++||||||+||+++.++.+|++|||+++........  
T Consensus        89 ~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  165 (270)
T cd05056          89 PLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKA  165 (270)
T ss_pred             CCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeeecccccceec
Confidence            99999999975   357888999999999999999998   9999999999999999999999999998754322111  


Q ss_pred             -CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          761 -FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       .......|.+||......++.++|||||||++||+++ |..||.........   .   ..........++   .....
T Consensus       166 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~---~---~~~~~~~~~~~~---~~~~~  236 (270)
T cd05056         166 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVI---G---RIENGERLPMPP---NCPPT  236 (270)
T ss_pred             CCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHH---H---HHHcCCcCCCCC---CCCHH
Confidence             1111223667787777778889999999999999986 88887644321100   0   000001011111   22346


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccCCCCC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLKPHGK  872 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~~~  872 (872)
                      +.+++.+|+..+|++|||+.++++.|+++..+.|
T Consensus       237 ~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~~~  270 (270)
T cd05056         237 LYSLMTKCWAYDPSKRPRFTELKAQLSDILQEEK  270 (270)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhccC
Confidence            7788999999999999999999999998876643

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=9.9e-34  Score=301.66  Aligned_cols=242  Identities=17%  Similarity=0.262  Sum_probs=189.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ....+|.|+||.||++.. .+|+.||||.+.... ...+.+.+|+..+++++||||+++++++...+..|+||||+++++
T Consensus        26 ~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~  105 (292)
T cd06658          26 SFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGA  105 (292)
T ss_pred             hhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCc
Confidence            456799999999999986 568899999986533 345568889999999999999999999999999999999999999


Q ss_pred             hHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccccc
Q 002875          690 LSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIA  766 (872)
Q Consensus       690 L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~  766 (872)
                      |.+++.. ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++........  ....+..
T Consensus       106 L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~  182 (292)
T cd06658         106 LTDIVTHTRMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTP  182 (292)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCc
Confidence            9998855 457888999999999999999999   999999999999999999999999999864322211  1122345


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .|.+||......++.++|||||||++|||++|+.||........   .........+. .   .........+.+++.+|
T Consensus       183 ~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~---~~~~~~~~~~~-~---~~~~~~~~~~~~li~~~  255 (292)
T cd06658         183 YWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQA---MRRIRDNLPPR-V---KDSHKVSSVLRGFLDLM  255 (292)
T ss_pred             cccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHhcCCCc-c---ccccccCHHHHHHHHHH
Confidence            57788888777788899999999999999999999874332110   00011111111 1   01111233566888899


Q ss_pred             ccCCCCCCCCHHHHHHH
Q 002875          847 TRSTPSDRPSMEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~  863 (872)
                      +..||++|||++|++++
T Consensus       256 l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         256 LVREPSQRATAQELLQH  272 (292)
T ss_pred             ccCChhHCcCHHHHhhC
Confidence            99999999999999976

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=2.1e-33  Score=301.03  Aligned_cols=248  Identities=18%  Similarity=0.217  Sum_probs=185.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|.. .+++.||+|.++...  .....+.+|+.++++++||||+++++++.+++..++||||++ +
T Consensus        10 ~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~   88 (301)
T cd07873          10 KLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-K   88 (301)
T ss_pred             EeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-c
Confidence            788999999999999986 478899999987532  224456789999999999999999999999999999999997 5


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      +|.+++..   ..++.....++.|+++||+|||+.   +|+||||||+||++++++.+||+|||++.........  ...
T Consensus        89 ~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  165 (301)
T cd07873          89 DLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEV  165 (301)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccc
Confidence            99988864   346788889999999999999998   9999999999999999999999999998654322211  112


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------cccccccccccc------cccC
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------PIDGLLGEMYNE------NEVG  827 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~~~~~~~~~~~~------~~~~  827 (872)
                      +...|.+||.... ..++.++||||+||++|||+||+.||.........         +...........      ....
T Consensus       166 ~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
T cd07873         166 VTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPK  245 (301)
T ss_pred             eeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCc
Confidence            3445677776643 45678899999999999999999888754321000         000000000000      0000


Q ss_pred             CCCc-----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSS-----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~-----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....     .......+.+++.+|++.||++|||++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         246 YRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             cccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            0000     01123456789999999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1.2e-33  Score=301.72  Aligned_cols=242  Identities=16%  Similarity=0.242  Sum_probs=189.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ....+|+|+||.||+|.. .+|+.||||.+.... ...+.+.+|+.+++.++||||+++++++..++..|+||||+++|+
T Consensus        25 ~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~  104 (297)
T cd06659          25 NYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGA  104 (297)
T ss_pred             hhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCC
Confidence            556799999999999986 478999999986533 335567889999999999999999999999999999999999999


Q ss_pred             hHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccccc
Q 002875          690 LSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIA  766 (872)
Q Consensus       690 L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~  766 (872)
                      |.+++.. ..++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++........  ....+..
T Consensus       105 L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~  181 (297)
T cd06659         105 LTDIVSQTRLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTP  181 (297)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCc
Confidence            9998865 458889999999999999999998   999999999999999999999999999864332211  1122445


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .|.+||+.....++.++|||||||++|||++|+.||.........   ..........    ..........+.+++.+|
T Consensus       182 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~l~~~i~~~  254 (297)
T cd06659         182 YWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAM---KRLRDSPPPK----LKNAHKISPVLRDFLERM  254 (297)
T ss_pred             cccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH---HHHhccCCCC----ccccCCCCHHHHHHHHHH
Confidence            577888887778889999999999999999999998743321100   0000000000    000111234567889999


Q ss_pred             ccCCCCCCCCHHHHHHH
Q 002875          847 TRSTPSDRPSMEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~  863 (872)
                      |+.+|++||+++|++++
T Consensus       255 l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         255 LTREPQERATAQELLDH  271 (297)
T ss_pred             hcCCcccCcCHHHHhhC
Confidence            99999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=6e-34  Score=312.90  Aligned_cols=242  Identities=13%  Similarity=0.120  Sum_probs=183.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||++.. .+|+.||||++....    ...+.+.+|+.++.+++||||+++++++.+.+..|+|||||+
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~   84 (360)
T cd05627           5 SLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLP   84 (360)
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCC
Confidence            778999999999999986 578999999997432    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC------
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD------  758 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~------  758 (872)
                      +|+|.+++.+.  .+......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......      
T Consensus        85 gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~  161 (360)
T cd05627          85 GGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYR  161 (360)
T ss_pred             CccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCccccccccccccc
Confidence            99999998753  46777888999999999999999   99999999999999999999999999976432110      


Q ss_pred             -------------------------------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCC
Q 002875          759 -------------------------------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSS  807 (872)
Q Consensus       759 -------------------------------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~  807 (872)
                                                     .....++..|++||+..+..++.++||||+||++|||+||+.||.....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~  241 (360)
T cd05627         162 NLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETP  241 (360)
T ss_pred             ccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCH
Confidence                                           0011245567888988888889999999999999999999999875432


Q ss_pred             CCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCC---HHHHHHH
Q 002875          808 LQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS---MEEALKL  863 (872)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt---~~~v~~~  863 (872)
                      ....  .... ........  ++. .....++.+++.+|+ .||++|++   ++|++++
T Consensus       242 ~~~~--~~i~-~~~~~~~~--p~~-~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~h  293 (360)
T cd05627         242 QETY--RKVM-NWKETLVF--PPE-VPISEKAKDLILRFC-TDSENRIGSNGVEEIKSH  293 (360)
T ss_pred             HHHH--HHHH-cCCCceec--CCC-CCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhcC
Confidence            1110  0000 00000000  000 011234556666655 49999985   6777655

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=2.3e-33  Score=293.23  Aligned_cols=241  Identities=15%  Similarity=0.170  Sum_probs=188.8

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ...+.+|+|+||.||++.. .+|+.||+|.++..  ....+.+.+|+.++++++||||+++++++.+++..|+||||+++
T Consensus         3 ~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   82 (255)
T cd08219           3 NVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDG   82 (255)
T ss_pred             eEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCC
Confidence            3678899999999999985 57899999998643  23456778899999999999999999999999999999999999


Q ss_pred             CChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CC
Q 002875          688 GNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SF  761 (872)
Q Consensus       688 g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~  761 (872)
                      |+|.+++..    ..+......++.|++.|++|||+.   +|+|+||||+||++++++.++++|||.+........  ..
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~  159 (255)
T cd08219          83 GDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACT  159 (255)
T ss_pred             CcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeeccccccccc
Confidence            999998864    246677889999999999999998   999999999999999999999999999865432211  11


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..+...+++||......++.++||||||+++|||++|..||........      ............+.   .....+.+
T Consensus       160 ~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~  230 (255)
T cd08219         160 YVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNL------ILKVCQGSYKPLPS---HYSYELRS  230 (255)
T ss_pred             ccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHH------HHHHhcCCCCCCCc---ccCHHHHH
Confidence            1234457788888777888999999999999999999999874321110      00000010000111   12345778


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+||+.||++|||++|++..
T Consensus       231 li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         231 LIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHHHHHhCCcccCCCHHHHhhc
Confidence            8999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.5e-33  Score=299.94  Aligned_cols=247  Identities=20%  Similarity=0.253  Sum_probs=184.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|++|.||+|+. .+|+.||||+++...   ...+.+.+|+.++++++||||+++++++.+++..|+||||++ 
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-   82 (285)
T cd07861           4 KIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS-   82 (285)
T ss_pred             EeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC-
Confidence            678899999999999986 478999999986532   224567889999999999999999999999999999999997 


Q ss_pred             CChHHHhhC-----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          688 GNLSEKIRT-----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       688 g~L~~~l~~-----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      |+|.+++..     ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++.........  
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  159 (285)
T cd07861          83 MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYT  159 (285)
T ss_pred             CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeecCCCccccc
Confidence            689888753     347788889999999999999998   9999999999999999999999999998654322111  


Q ss_pred             CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccccccccccccc
Q 002875          761 FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGLLGEMYNEN  824 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~~~~~~~~~  824 (872)
                      ...+...|.+||.... ..++.++|||||||++|||+||+.||.+......               |........ +...
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (285)
T cd07861         160 HEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPD-YKNT  238 (285)
T ss_pred             CCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHH-HHhh
Confidence            1122345677786643 4567889999999999999999988864321100               000000000 0000


Q ss_pred             ccC-CCC----chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVG-SSS----SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~-~~~----~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ... ...    .......++.+++.+||+.||++|||+++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~  282 (285)
T cd07861         239 FPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNH  282 (285)
T ss_pred             ccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            000 000    001123467789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-33  Score=295.71  Aligned_cols=242  Identities=18%  Similarity=0.199  Sum_probs=187.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|.|++|.||+|.. .+++.||+|.++... ...+.+.+|++++++++||||+++++++.+++..|+||||+++|+
T Consensus         9 i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   88 (280)
T cd06611           9 IIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGA   88 (280)
T ss_pred             HHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCc
Confidence            888999999999999986 478999999987543 245678889999999999999999999999999999999999999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccc
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAK  764 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~  764 (872)
                      |.+++..   ..++.+...++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++........  ....+
T Consensus        89 L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  165 (280)
T cd06611          89 LDSIMLELERGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIG  165 (280)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhhcccccccceeec
Confidence            9999865   357888899999999999999999   999999999999999999999999998754322111  11123


Q ss_pred             ccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          765 IAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       765 ~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ...|.+||...     ...++.++|||||||++|||+||+.||........      ...+.... .+...........+
T Consensus       166 ~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~  238 (280)
T cd06611         166 TPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRV------LLKILKSE-PPTLDQPSKWSSSF  238 (280)
T ss_pred             chhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHH------HHHHhcCC-CCCcCCcccCCHHH
Confidence            34466777653     33467789999999999999999998864322110      00111110 00000111223457


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||+.||++||++++++++
T Consensus       239 ~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         239 NDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             HHHHHHHhccChhhCcCHHHHhcC
Confidence            788999999999999999999876

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-33  Score=305.65  Aligned_cols=244  Identities=15%  Similarity=0.071  Sum_probs=181.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||++.. .+|+.||||.+...    ....+.+.+|+.++..++||||+++++++.+++..|+||||++
T Consensus         5 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   84 (331)
T cd05597           5 ILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYV   84 (331)
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCC
Confidence            778999999999999985 56899999999742    2234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---C
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---S  760 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~  760 (872)
                      +|+|.+++.+   ..+......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++........   .
T Consensus        85 g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~  161 (331)
T cd05597          85 GGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSN  161 (331)
T ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCcccc
Confidence            9999999964   356778888999999999999999   999999999999999999999999999865432211   1


Q ss_pred             CcccccccCchhhhcc-----cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          761 FPAKIAWTESGEFYNA-----MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~-----~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      ...++..|++||.+..     ..++.++||||+||++|||++|+.||....................     .++.....
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~  236 (331)
T cd05597         162 VAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQ-----FPPDVTDV  236 (331)
T ss_pred             ceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCccc-----CCCccCCC
Confidence            1224555778887752     3467789999999999999999999875432110000000000000     01111112


Q ss_pred             HHHHHHHHHHccc--CCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTR--STPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~--~dp~~Rpt~~~v~~~  863 (872)
                      ...+.+++.+|+.  .++..||++++++++
T Consensus       237 ~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         237 SEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             CHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            2345566666554  444458899999876

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.7e-33  Score=295.80  Aligned_cols=247  Identities=21%  Similarity=0.277  Sum_probs=186.9

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-----------hHHHHHHHHHHhhccCCCCceeEEEEEecCCe
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-----------RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ  677 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  677 (872)
                      +...+.+|.|+||.||+|.. .+|+.||||.++....           ..+.+.+|+..+++++||||+++++++...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            44678899999999999985 5799999998864211           12457789999999999999999999999999


Q ss_pred             eEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      .++||||+++|+|.+++++.  .++..+..++.|++.|++|||+.   +++||||||+||+++.++.+|++|||+++...
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~  159 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSD  159 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeecccccccc
Confidence            99999999999999998763  46778888999999999999998   99999999999999999999999999986543


Q ss_pred             ccCCC----CcccccccCchhhhcccC--CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCC
Q 002875          756 LADGS----FPAKIAWTESGEFYNAMK--EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       756 ~~~~~----~~~~~~~~~~~e~~~~~~--~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      .....    ...+...|.+||......  ++.++||||+||++||+++|..|+.........  ........... . ..
T Consensus       160 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~--~~~~~~~~~~~-~-~~  235 (272)
T cd06629         160 DIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAM--FKLGNKRSAPP-I-PP  235 (272)
T ss_pred             ccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHH--HHhhccccCCc-C-Cc
Confidence            21111    111333466777765433  788899999999999999999998643221100  00000000000 0 01


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+....+.+++.+||..||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         236 DVSMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             cccccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            1112234567889999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=2.6e-33  Score=299.03  Aligned_cols=247  Identities=17%  Similarity=0.184  Sum_probs=187.2

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecC-----Ce
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR-----HQ  677 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-----~~  677 (872)
                      .+.|.  ..+.+|.|+||.||++.. .+|+.||+|.+.......+.+.+|+.+++++ +||||++++++|...     +.
T Consensus        21 ~~~y~--~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~   98 (291)
T cd06639          21 TDTWE--IIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQ   98 (291)
T ss_pred             CCCeE--EEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCe
Confidence            34455  788999999999999986 5788999999976544456677889999988 799999999998753     35


Q ss_pred             eEEEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      .|+||||+++|+|.++++.      ..++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        99 ~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~~~kl~dfg~~  175 (291)
T cd06639          99 LWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVS  175 (291)
T ss_pred             eEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEeecccc
Confidence            8999999999999998752      457888899999999999999998   9999999999999999999999999998


Q ss_pred             ccccccCC--CCcccccccCchhhhccc-----CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc
Q 002875          752 YLTQLADG--SFPAKIAWTESGEFYNAM-----KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN  824 (872)
Q Consensus       752 ~~~~~~~~--~~~~~~~~~~~~e~~~~~-----~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  824 (872)
                      ........  ....+...|.+||.....     .++.++|||||||++|||+||+.|+........      ........
T Consensus       176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~------~~~~~~~~  249 (291)
T cd06639         176 AQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKT------LFKIPRNP  249 (291)
T ss_pred             hhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHH------HHHHhcCC
Confidence            65432111  112234446777776432     357889999999999999999998864322110      00110000


Q ss_pred             ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ........+....+.+++.+||+.||++||++.|++++
T Consensus       250 -~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         250 -PPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             -CCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence             00000111233457889999999999999999999864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=2.4e-33  Score=300.77  Aligned_cols=244  Identities=19%  Similarity=0.239  Sum_probs=185.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCc----EEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGI----TVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~----~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|+||.||+|.. .+|.    .||+|.+....  .....+.+|+.++++++||||++++|+|... ..++|+||
T Consensus        11 ~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~v~e~   89 (303)
T cd05110          11 RVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVTQL   89 (303)
T ss_pred             eccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Cceeeehh
Confidence            678899999999999985 4454    57889886532  2244678899999999999999999999764 46799999


Q ss_pred             cCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          685 LPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       685 ~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      +++|+|.+++...   .++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++........ 
T Consensus        90 ~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~  166 (303)
T cd05110          90 MPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEY  166 (303)
T ss_pred             cCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEccccccccccCccccc
Confidence            9999999998753   47788899999999999999998   9999999999999999999999999998754322211 


Q ss_pred             ---CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 ---FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 ---~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                         .......|.+||...+..++.++|||||||++|||+| |+.|+.+.....   ........   ...+.++   ...
T Consensus       167 ~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~---~~~~~~~~---~~~~~~~---~~~  237 (303)
T cd05110         167 NADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTRE---IPDLLEKG---ERLPQPP---ICT  237 (303)
T ss_pred             ccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHHCC---CCCCCCC---CCC
Confidence               1112234667788777788899999999999999998 777775322110   00011000   0011111   122


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .++.+++..||..+|++||+++|+++.|+.+.
T Consensus       238 ~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~  269 (303)
T cd05110         238 IDVYMVMVKCWMIDADSRPKFKELAAEFSRMA  269 (303)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            45778899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.5e-33  Score=308.11  Aligned_cols=254  Identities=19%  Similarity=0.255  Sum_probs=188.1

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC---
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR---  675 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~---  675 (872)
                      ++.+.|.  ..+.||+|+||.||+|.. .+++.||||++....   ...+.+.+|++++++++||||+++++++...   
T Consensus        12 ~~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (343)
T cd07878          12 EVPERYQ--NLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSI   89 (343)
T ss_pred             hhhhhhh--hheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc
Confidence            4555666  889999999999999985 678899999987532   2345567899999999999999999988643   


Q ss_pred             ---CeeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          676 ---HQAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       676 ---~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                         ...|+||||+ +++|.+++.. ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        90 ~~~~~~~~~~~~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~  165 (343)
T cd07878          90 ENFNEVYLVTNLM-GADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDFGLA  165 (343)
T ss_pred             cccCcEEEEeecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCCccc
Confidence               3579999998 7799988865 468888899999999999999999   9999999999999999999999999998


Q ss_pred             ccccccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc---------ccccccc--
Q 002875          752 YLTQLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP---------IDGLLGE--  819 (872)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~---------~~~~~~~--  819 (872)
                      +........ ..++.+|.+||+... ..++.++||||+||++|||++|+.||..........         .......  
T Consensus       166 ~~~~~~~~~-~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (343)
T cd07878         166 RQADDEMTG-YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKIS  244 (343)
T ss_pred             eecCCCcCC-ccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcc
Confidence            764432222 224556778887654 567889999999999999999999986433111000         0000000  


Q ss_pred             ------cccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          820 ------MYNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       820 ------~~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                            .....+.......    ......+.+++.+|++.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         245 SEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             hhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                  0000000000000    0112346789999999999999999999865

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.2e-33  Score=293.36  Aligned_cols=241  Identities=20%  Similarity=0.228  Sum_probs=191.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ....+|.|++|.||+|.. .+|+.||+|.+....  .....+.+|++++++++||||+++++++.++...|+|+||+++|
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (274)
T cd06609           5 LLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGG   84 (274)
T ss_pred             hhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCC
Confidence            778899999999999986 478999999987542  23456788999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          689 NLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       689 ~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      +|.+++.. ..++.+...++.|++.|++|||+.   +++||||+|+||++++++.++++|||+++.......  ....+.
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~  161 (274)
T cd06609          85 SCLDLLKPGKLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGT  161 (274)
T ss_pred             cHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCC
Confidence            99999987 468889999999999999999998   999999999999999999999999999876543211  112234


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||+..+..++.++|||||||++|||+||..||........   .........+. .  ..  ......+.+++.+
T Consensus       162 ~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~---~~~~~~~~~~~-~--~~--~~~~~~~~~~l~~  233 (274)
T cd06609         162 PFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRV---LFLIPKNNPPS-L--EG--NKFSKPFKDFVSL  233 (274)
T ss_pred             ccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHH---HHHhhhcCCCC-C--cc--cccCHHHHHHHHH
Confidence            457788988877789999999999999999999999864331110   00000000000 0  00  0123457789999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||..||++|||+++++++
T Consensus       234 ~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         234 CLNKDPKERPSAKELLKH  251 (274)
T ss_pred             HhhCChhhCcCHHHHhhC
Confidence            999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=2.6e-33  Score=294.82  Aligned_cols=246  Identities=21%  Similarity=0.217  Sum_probs=191.5

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|++|.||++... +++.||+|.+....  ...+.+.+|++++++++||||+++++++...+..++||||++++
T Consensus         5 ~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (265)
T cd06605           5 YLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGG   84 (265)
T ss_pred             HHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCC
Confidence            7789999999999999874 68999999987543  34567788999999999999999999999999999999999999


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|.+++..   ..+......++.|+++|++|+|+ .   +++||||||+||++++++.+||+|||.+............+
T Consensus        85 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~  161 (265)
T cd06605          85 SLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVG  161 (265)
T ss_pred             cHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccC
Confidence            99999974   34677788999999999999999 7   99999999999999999999999999986543221111223


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ...|.+||+..+..++.++||||+||++|||+||+.|+.......... ...............+.  ......+.+++.
T Consensus       162 ~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~li~  238 (265)
T cd06605         162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGI-FELLQYIVNEPPPRLPS--GKFSPDFQDFVN  238 (265)
T ss_pred             ChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccH-HHHHHHHhcCCCCCCCh--hhcCHHHHHHHH
Confidence            334677888877788899999999999999999999987543211111 11111111111111111  113456789999


Q ss_pred             HcccCCCCCCCCHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +||..||++|||+.|++++
T Consensus       239 ~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         239 LCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             HHcCCCchhCcCHHHHhhC
Confidence            9999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=3.6e-33  Score=292.43  Aligned_cols=241  Identities=19%  Similarity=0.225  Sum_probs=187.9

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc------hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|++|.||+|+.. +|+.||+|.+....      ...+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus         4 ~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   83 (258)
T cd06632           4 KGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLEL   83 (258)
T ss_pred             ccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEe
Confidence            5678999999999999976 89999999986532      2345788899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-CCC
Q 002875          685 LPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-GSF  761 (872)
Q Consensus       685 ~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-~~~  761 (872)
                      +++++|.+++...  .++.....++.|+++|++|||+.   +|+|+||||+||+++.++.+||+|||++....... ...
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~  160 (258)
T cd06632          84 VPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKS  160 (258)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceeccccccccc
Confidence            9999999999753  47888889999999999999998   99999999999999999999999999986543222 111


Q ss_pred             cccccccCchhhhcccC-CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMK-EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~-~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ..+...+.+||...... ++.++|||||||++|||+||+.||........ .     .........  ..........+.
T Consensus       161 ~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~-~-----~~~~~~~~~--~~~~~~~~~~~~  232 (258)
T cd06632         161 FKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAA-V-----FKIGRSKEL--PPIPDHLSDEAK  232 (258)
T ss_pred             cCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHH-H-----HHHHhcccC--CCcCCCcCHHHH
Confidence            22344466777665544 78889999999999999999999865431110 0     000000000  000111234567


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||+.+|++||+++|++++
T Consensus       233 ~li~~~l~~~p~~Rp~~~~~l~~  255 (258)
T cd06632         233 DFILKCLQRDPSLRPTAAELLEH  255 (258)
T ss_pred             HHHHHHhhcCcccCcCHHHHhcC
Confidence            88999999999999999999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-33  Score=291.04  Aligned_cols=244  Identities=17%  Similarity=0.203  Sum_probs=190.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|+|+||.||+|.. .+++.+|+|.+..... ..+.+.+|++++++++||||+++++++.+.+..|+||||+++++
T Consensus         7 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~   86 (262)
T cd06613           7 LIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGS   86 (262)
T ss_pred             EEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCc
Confidence            778899999999999986 4678999999875432 45678899999999999999999999999999999999999999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccc
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAK  764 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~  764 (872)
                      |.+++..   ..+..+...++.|++.|++|||+.   +|+|+||||+||++++++.+||+|||++........  ....+
T Consensus        87 l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  163 (262)
T cd06613          87 LQDIYQVTRGPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIG  163 (262)
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccC
Confidence            9998864   357788889999999999999998   999999999999999999999999999865432211  11223


Q ss_pred             ccccCchhhhccc---CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          765 IAWTESGEFYNAM---KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       765 ~~~~~~~e~~~~~---~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..+|.+||.....   .++.++|||||||++|||+||+.|+.+........  ......+.+.   ...........+.+
T Consensus       164 ~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~  238 (262)
T cd06613         164 TPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALF--LISKSNFPPP---KLKDKEKWSPVFHD  238 (262)
T ss_pred             CccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHH--HHHhccCCCc---cccchhhhhHHHHH
Confidence            4456778877655   67888999999999999999999987533211100  0000000110   01112233456889


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+||..||++|||++|++++
T Consensus       239 li~~~l~~~p~~Rpt~~~il~~  260 (262)
T cd06613         239 FIKKCLTKDPKKRPTATKLLQH  260 (262)
T ss_pred             HHHHHcCCChhhCCCHHHHhcC
Confidence            9999999999999999999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=2.2e-33  Score=304.47  Aligned_cols=243  Identities=16%  Similarity=0.097  Sum_probs=184.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||++.. .+++.||||.+....    ...+.+.+|+.++..++|+||+++++++.+++..|+||||++
T Consensus         5 i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~   84 (331)
T cd05624           5 IIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYV   84 (331)
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCC
Confidence            778999999999999986 578899999997522    234557888999999999999999999999999999999999


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---  760 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---  760 (872)
                      +|+|.+++..   ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........   
T Consensus        85 gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~  161 (331)
T cd05624          85 GGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSS  161 (331)
T ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeec
Confidence            9999999965   346778888999999999999998   9999999999999999999999999998654322211   


Q ss_pred             CcccccccCchhhhcc-----cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccc-cccCCCCchHH
Q 002875          761 FPAKIAWTESGEFYNA-----MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE-NEVGSSSSLQD  834 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~-----~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  834 (872)
                      ...+...|++||++..     ..++.++|||||||++|||+||+.||........      ...+... .....+....+
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~------~~~i~~~~~~~~~p~~~~~  235 (331)
T cd05624         162 VAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET------YGKIMNHEERFQFPSHITD  235 (331)
T ss_pred             cccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHH------HHHHHcCCCcccCCCcccc
Confidence            1224555778887754     3567889999999999999999999875432110      0111110 00111111222


Q ss_pred             HHHHHHHHHHHcccCCCCC--CCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSD--RPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~--Rpt~~~v~~~  863 (872)
                      ...++.+++.+|+..++++  |+++++++++
T Consensus       236 ~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         236 VSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             CCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            3456777888888765544  5689888765

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=5.9e-33  Score=292.05  Aligned_cols=240  Identities=17%  Similarity=0.221  Sum_probs=182.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc------hhHHHHHHHHHHhhccCCCCceeEEEEEec--CCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA------TRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lv~  682 (872)
                      ..+.+|+|+||.||+|.. .+|+.||+|++....      ...+.+.+|+.++++++||||+++++++.+  .+..++||
T Consensus         6 ~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~   85 (266)
T cd06651           6 RGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFM   85 (266)
T ss_pred             ccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEE
Confidence            788999999999999986 568999999986431      234567889999999999999999999875  36789999


Q ss_pred             cccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--
Q 002875          683 DYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       683 ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--  758 (872)
                      ||+++++|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  
T Consensus        86 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  162 (266)
T cd06651          86 EYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMS  162 (266)
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCcccccccccc
Confidence            99999999999875  357788889999999999999998   99999999999999999999999999986432211  


Q ss_pred             ---CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          759 ---GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       759 ---~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                         .....+...|.+||......++.++||||+||++|||+||+.||........  ......   ... .  +......
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~--~~~~~~---~~~-~--~~~~~~~  234 (266)
T cd06651         163 GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAA--IFKIAT---QPT-N--PQLPSHI  234 (266)
T ss_pred             CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHH--HHHHhc---CCC-C--CCCchhc
Confidence               0111234456778888777788899999999999999999999864322110  000000   000 0  0001112


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.+.+++ +||..+|++||+|+|++++
T Consensus       235 ~~~~~~li-~~~~~~p~~Rp~~~eil~h  261 (266)
T cd06651         235 SEHARDFL-GCIFVEARHRPSAEELLRH  261 (266)
T ss_pred             CHHHHHHH-HHhcCChhhCcCHHHHhcC
Confidence            23344454 6888999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=4.1e-33  Score=301.51  Aligned_cols=187  Identities=21%  Similarity=0.276  Sum_probs=150.3

Q ss_pred             hhhccCCCCCceeeeecC---CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEec--CCeeEEEEcccCC
Q 002875          613 CEEAARPQSAAGCKAVLP---TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN  687 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~---~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lv~ey~~~  687 (872)
                      ...+|+|+||.||+|+..   +++.||+|.+..... ...+.+|++++++++|||||++++++..  +...++||||+++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            467999999999999854   457899999874332 3456789999999999999999999854  5678999999975


Q ss_pred             CChHHHhhC-----------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee----CCCCCeeEccccccc
Q 002875          688 GNLSEKIRT-----------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF----DENMEPHLAEFGFKY  752 (872)
Q Consensus       688 g~L~~~l~~-----------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill----~~~~~~ki~dfg~~~  752 (872)
                       +|.+++..           ..++.....++.|++.||+|||+.   +|+||||||+||++    +.++.+||+|||+++
T Consensus        85 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07867          85 -DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             -cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeecccee
Confidence             88777642           245677889999999999999998   99999999999999    566789999999997


Q ss_pred             cccccCC-----CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCC
Q 002875          753 LTQLADG-----SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNA  804 (872)
Q Consensus       753 ~~~~~~~-----~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~  804 (872)
                      .......     ....++..|.+||...+ ..++.++||||+||++|||+||+.||..
T Consensus       161 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         161 LFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             ccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            6432211     11123455778887754 4578899999999999999999998864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-33  Score=306.30  Aligned_cols=236  Identities=14%  Similarity=0.049  Sum_probs=176.1

Q ss_pred             ccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhcc---CCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          616 AARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTV---RHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       616 ~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l---~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ||+|+||.||+|.. .+|+.||||++.....    .......|..++.+.   +||||+++++++.+++..|+||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            69999999999985 5689999999964321    122334455666554   699999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcc
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPA  763 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~  763 (872)
                      |+|.+++...  .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++......  .....
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  157 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFC  157 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCcc
Confidence            9999998653  57778889999999999999999   99999999999999999999999999986432211  11222


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      ++..|++||.... ..++.++||||+||++|||+||+.||.......      ....+.... ...+.  .....++.++
T Consensus       158 gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~------~~~~i~~~~-~~~~~--~~~~~~~~~l  228 (330)
T cd05586         158 GTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQ------MYRNIAFGK-VRFPK--NVLSDEGRQF  228 (330)
T ss_pred             CCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHH------HHHHHHcCC-CCCCC--ccCCHHHHHH
Confidence            4455777887654 347888999999999999999999987543211      011111100 00010  0123456788


Q ss_pred             HHHcccCCCCCCC----CHHHHHHH
Q 002875          843 ALLCTRSTPSDRP----SMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rp----t~~~v~~~  863 (872)
                      +.+||+.||++||    +++|++++
T Consensus       229 i~~~L~~~P~~R~~~~~~~~~ll~h  253 (330)
T cd05586         229 VKGLLNRNPQHRLGAHRDAVELKEH  253 (330)
T ss_pred             HHHHcCCCHHHCCCCCCCHHHHhcC
Confidence            9999999999998    56776653

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=9.1e-33  Score=292.27  Aligned_cols=244  Identities=19%  Similarity=0.191  Sum_probs=185.7

Q ss_pred             hhhhccCCCCCceeeeecC------CCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ....+|+|+||.||+|+..      +.+.||+|.+.....  ..+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus         9 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   88 (275)
T cd05046           9 EITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILE   88 (275)
T ss_pred             eeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEE
Confidence            7788999999999999853      356899998865433  25678899999999999999999999999899999999


Q ss_pred             ccCCCChHHHhhC-----------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          684 YLPNGNLSEKIRT-----------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       684 y~~~g~L~~~l~~-----------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      |+++|+|.+++..           ..++..+..++.|++.|++|||+.   +|+||||||+||+++.++.+|++|||+++
T Consensus        89 ~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~~~~~~~  165 (275)
T cd05046          89 YTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSLLSLSK  165 (275)
T ss_pred             ecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEccccccc
Confidence            9999999999864           247888999999999999999998   99999999999999999999999999976


Q ss_pred             cccccCC---CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCC
Q 002875          753 LTQLADG---SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       753 ~~~~~~~---~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      .......   ........|.+||.......+.++|||||||++|||++ |..||..... .............    ...
T Consensus       166 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~-~~~~~~~~~~~~~----~~~  240 (275)
T cd05046         166 DVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSD-EEVLNRLQAGKLE----LPV  240 (275)
T ss_pred             ccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccch-HHHHHHHHcCCcC----CCC
Confidence            4321111   11112233667787666667888999999999999999 5556543211 1000000000000    000


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .   ......+.+++.+||+.||++|||+.|+++.|.+
T Consensus       241 ~---~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~~  275 (275)
T cd05046         241 P---EGCPSRLYKLMTRCWAVNPKDRPSFSELVSALGE  275 (275)
T ss_pred             C---CCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence            1   1123467789999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=1.3e-33  Score=300.17  Aligned_cols=249  Identities=19%  Similarity=0.235  Sum_probs=185.9

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...+.+|+|+||.||+|+. .+|+.||+|+++....   ..+.+.+|++++++++||||+++++++.+.+..++||||++
T Consensus         3 ~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (284)
T cd07839           3 EKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCD   82 (284)
T ss_pred             eeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCC
Confidence            3678899999999999986 5799999999875322   23456789999999999999999999999999999999997


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC--
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF--  761 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~--  761 (872)
                       |+|.+++..   ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.........  
T Consensus        83 -~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  158 (284)
T cd07839          83 -QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSA  158 (284)
T ss_pred             -CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCC
Confidence             588887753   357888899999999999999998   99999999999999999999999999987543222111  


Q ss_pred             cccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc----------c---ccccccccccc-
Q 002875          762 PAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID----------G---LLGEMYNENEV-  826 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~----------~---~~~~~~~~~~~-  826 (872)
                      ..+...|.+||...+ ..++.++||||+||++|||+||+.|+..+.........          .   ...+..+.... 
T Consensus       159 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (284)
T cd07839         159 EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYP  238 (284)
T ss_pred             CccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccC
Confidence            123345777887654 34688899999999999999999997644321110000          0   00000000000 


Q ss_pred             CCC------CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSS------SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~------~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...      +..+....++.+++.+||+.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h  281 (284)
T cd07839         239 MYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQH  281 (284)
T ss_pred             CCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcC
Confidence            000      0011234567899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=4.4e-33  Score=293.36  Aligned_cols=240  Identities=18%  Similarity=0.256  Sum_probs=186.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----------hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----------RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      ....+|.|++|.||+|.. .+++.||+|.+.....          ..+.+.+|+.++++++||||+++++++.+.+..++
T Consensus         4 ~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (267)
T cd06628           4 KGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNI   83 (267)
T ss_pred             ccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEE
Confidence            567899999999999986 5688999998864211          12467889999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          681 LYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ||||+++++|.+++...  .++.....++.|++.|++|||+.   +++||||||+||++++++.+||+|||+++......
T Consensus        84 v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06628          84 FLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLEANS  160 (267)
T ss_pred             EEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCCCccccccc
Confidence            99999999999999763  46777889999999999999998   99999999999999999999999999987553211


Q ss_pred             CC--------CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          759 GS--------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       759 ~~--------~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      ..        ...+...|.+||......++.++||||+||++|||+||+.||........  ... ......+      .
T Consensus       161 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~--~~~-~~~~~~~------~  231 (267)
T cd06628         161 LSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQA--IFK-IGENASP------E  231 (267)
T ss_pred             ccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHH--HHH-HhccCCC------c
Confidence            00        01123346677887777778889999999999999999999875332110  000 0000000      1


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........+.+++.+||+.||.+||+++|++++
T Consensus       232 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  264 (267)
T cd06628         232 IPSNISSEAIDFLEKTFEIDHNKRPTAAELLKH  264 (267)
T ss_pred             CCcccCHHHHHHHHHHccCCchhCcCHHHHhhC
Confidence            111223567788999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=4.5e-33  Score=302.88  Aligned_cols=245  Identities=22%  Similarity=0.268  Sum_probs=188.0

Q ss_pred             hhhhccCCCCCceeeeec--------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL--------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.||+|+||.||+|..        .++..||+|.++...  ...+.+.+|+++++++ +||||++++++|...+..++
T Consensus        16 i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~l   95 (334)
T cd05100          16 LGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV   95 (334)
T ss_pred             ecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEE
Confidence            788999999999999963        123479999887432  2356788899999999 79999999999999999999


Q ss_pred             EEcccCCCChHHHhhC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          681 LYDYLPNGNLSEKIRT------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      ||||+++|+|.+++..                  ...|.++..++.|++.||+|||..   +|+||||||+||+++.++.
T Consensus        96 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nill~~~~~  172 (334)
T cd05100          96 LVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVLVTEDNV  172 (334)
T ss_pred             EEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCc
Confidence            9999999999999864                  246788889999999999999998   9999999999999999999


Q ss_pred             eeEccccccccccccCCC--C--cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccc
Q 002875          743 PHLAEFGFKYLTQLADGS--F--PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~~--~--~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~  817 (872)
                      +||+|||+++........  .  ......|++||......++.++|||||||++|||++ |..||.... ...     ..
T Consensus       173 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-~~~-----~~  246 (334)
T cd05100         173 MKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP-VEE-----LF  246 (334)
T ss_pred             EEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC-HHH-----HH
Confidence            999999998754322111  1  111234677888777778889999999999999999 666664322 111     00


Q ss_pred             cccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          818 GEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ..+........+   ......+.+++.+||+.+|++|||+.|+++.|+.+.
T Consensus       247 ~~~~~~~~~~~~---~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~  294 (334)
T cd05100         247 KLLKEGHRMDKP---ANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVL  294 (334)
T ss_pred             HHHHcCCCCCCC---CCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHh
Confidence            011011100001   122346778999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=5.2e-33  Score=297.86  Aligned_cols=248  Identities=21%  Similarity=0.254  Sum_probs=185.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh------HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR------IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|++|.||+|.. .+|+.||||.+......      ...+.+|++++++++||||+++++++.+.+..++||||
T Consensus         4 ~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   83 (298)
T cd07841           4 KGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEF   83 (298)
T ss_pred             eeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEcc
Confidence            667899999999999986 57899999999754322      34567889999999999999999999999999999999


Q ss_pred             cCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          685 LPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       685 ~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      + +|+|.+++...   .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.........
T Consensus        84 ~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~  159 (298)
T cd07841          84 M-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKM  159 (298)
T ss_pred             c-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeeeccCCCccc
Confidence            9 89999999763   57888999999999999999999   99999999999999999999999999987554322111


Q ss_pred             --cccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------------cccccccccccc
Q 002875          762 --PAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------------PIDGLLGEMYNE  823 (872)
Q Consensus       762 --~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------------~~~~~~~~~~~~  823 (872)
                        ......|.+||...+ ..++.++|||||||++|||+||..+|.........               +...........
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (298)
T cd07841         160 THQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEF  239 (298)
T ss_pred             cccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccc
Confidence              112334667776543 45678899999999999999996665432211000               000000000000


Q ss_pred             c---ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          824 N---EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       824 ~---~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .   ..............+.+++.+||+.||++|||++|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         240 KPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             cccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            0   000000012234568899999999999999999999976

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.3e-33  Score=293.58  Aligned_cols=245  Identities=18%  Similarity=0.244  Sum_probs=188.8

Q ss_pred             hhhhccCCCCCceeeeecC-CCc----EEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGI----TVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~----~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|+||.||+|... +|.    .||+|.+.....  ....+.+|+..+++++||||++++++|.+ ...++||||
T Consensus        11 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~   89 (279)
T cd05057          11 KIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQLITQL   89 (279)
T ss_pred             EcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEEEEec
Confidence            7789999999999999853 343    689998875432  35678889999999999999999999987 788999999


Q ss_pred             cCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          685 LPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       685 ~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      +++|+|.+++..   ..++.....++.|++.|++|||+.   +|+||||||+||++++++.+|++|||+++.........
T Consensus        90 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~  166 (279)
T cd05057          90 MPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEY  166 (279)
T ss_pred             CCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCcccccccCcccce
Confidence            999999999975   357888999999999999999998   99999999999999999999999999987654322111


Q ss_pred             c----ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          762 P----AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       762 ~----~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      .    .....|.+||......++.++|||||||++||++| |+.||..... ...  ...   +........+..   ..
T Consensus       167 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-~~~--~~~---~~~~~~~~~~~~---~~  237 (279)
T cd05057         167 HAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA-VEI--PDL---LEKGERLPQPPI---CT  237 (279)
T ss_pred             ecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH-HHH--HHH---HhCCCCCCCCCC---CC
Confidence            1    11223566777766678889999999999999999 8888764321 110  000   001110111111   12


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ..+.+++.+||..||++||++.++++.|..+..
T Consensus       238 ~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~  270 (279)
T cd05057         238 IDVYMVLVKCWMIDAESRPTFKELINEFSKMAR  270 (279)
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            356788999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=4.3e-33  Score=291.48  Aligned_cols=241  Identities=16%  Similarity=0.188  Sum_probs=190.0

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...+.+|+|+||.+|++.. .+|+.||+|.+...   ....+.+.+|+.++++++||||+++++++.+.+..++||||++
T Consensus         3 ~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd08218           3 VKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCE   82 (256)
T ss_pred             eEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCC
Confidence            3778999999999999985 57899999998642   2345578889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          687 NGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       687 ~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      +|+|.+++..    ..++.+...++.|++.|++|||+.   +++|+||+|+||+++.++.++++|||++.........  
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~  159 (256)
T cd08218          83 GGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELAR  159 (256)
T ss_pred             CCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhh
Confidence            9999999865    246788899999999999999998   9999999999999999999999999998654322111  


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+...+.+||+..+...+.++|||||||++|||+||+.|+.......      ...........   +.......++.
T Consensus       160 ~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~  230 (256)
T cd08218         160 TCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKN------LVLKIIRGSYP---PVSSHYSYDLR  230 (256)
T ss_pred             hccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHH------HHHHHhcCCCC---CCcccCCHHHH
Confidence            1123344678888777778889999999999999999999886433211      01111111100   01112234678


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||+.+|++||+|+||+++
T Consensus       231 ~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         231 NLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             HHHHHHhhCChhhCcCHHHHhhC
Confidence            89999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=3.8e-33  Score=302.92  Aligned_cols=243  Identities=16%  Similarity=0.086  Sum_probs=182.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||++.. .+++.||+|.+....    ...+.+.+|+.++..++|+||+++++++.+++..|+||||++
T Consensus         5 ~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~   84 (332)
T cd05623           5 ILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYV   84 (332)
T ss_pred             EEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccC
Confidence            778999999999999986 457889999986422    234457889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---C
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---S  760 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~  760 (872)
                      +|+|.+++++   ..++.....++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||+++.......   .
T Consensus        85 ~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~  161 (332)
T cd05623          85 GGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSS  161 (332)
T ss_pred             CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheecccCCcceec
Confidence            9999999965   357778888999999999999998   999999999999999999999999999864322111   1


Q ss_pred             CcccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc-ccCCCCchHH
Q 002875          761 FPAKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQD  834 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  834 (872)
                      ...++..|.+||+..     ...++.++|||||||++|||++|+.||........      ...+.... ....+.....
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~------~~~i~~~~~~~~~p~~~~~  235 (332)
T cd05623         162 VAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET------YGKIMNHKERFQFPAQVTD  235 (332)
T ss_pred             ccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHH------HHHHhCCCccccCCCcccc
Confidence            122455677888765     23577889999999999999999999975432111      11111100 0001111122


Q ss_pred             HHHHHHHHHHHcccCC--CCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRST--PSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~d--p~~Rpt~~~v~~~  863 (872)
                      ....+.+++.+|+..+  +..||+++|++++
T Consensus       236 ~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         236 VSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             CCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            3345667777766444  4447899999876

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=2.9e-33  Score=317.68  Aligned_cols=247  Identities=15%  Similarity=0.111  Sum_probs=180.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCC------CCceeEEEEEecC-CeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRH------KNLIRLLGFCYNR-HQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H------~niv~l~~~~~~~-~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|.. .+++.||||+++......+....|++++++++|      ++++++++++... +..|+|||
T Consensus       133 i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~  212 (467)
T PTZ00284        133 ILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMP  212 (467)
T ss_pred             EEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEe
Confidence            788999999999999986 568899999997543344455667777776654      4589999998764 57899999


Q ss_pred             ccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCC----------------Cee
Q 002875          684 YLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENM----------------EPH  744 (872)
Q Consensus       684 y~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~----------------~~k  744 (872)
                      |+ +++|.+++.+  ..++.+...|+.||+.||+|||+ .   +||||||||+|||++.++                .+|
T Consensus       213 ~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~---gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vk  288 (467)
T PTZ00284        213 KY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTEL---HLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVR  288 (467)
T ss_pred             cc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEecCCcccccccccccCCCCceEE
Confidence            98 6799998865  45788889999999999999997 5   899999999999998765                499


Q ss_pred             EccccccccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-cccc-----
Q 002875          745 LAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GLLG-----  818 (872)
Q Consensus       745 i~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~~~-----  818 (872)
                      |+|||.+...... .....++.+|++||++.+..++.++|||||||++|||+||+.||............ ...+     
T Consensus       289 l~DfG~~~~~~~~-~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~  367 (467)
T PTZ00284        289 ICDLGGCCDERHS-RTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSE  367 (467)
T ss_pred             ECCCCccccCccc-cccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHH
Confidence            9999987543222 12223556688899988888999999999999999999999998754321100000 0000     


Q ss_pred             -----------cccccc----ccCCC---------CchHH--HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 -----------EMYNEN----EVGSS---------SSLQD--EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 -----------~~~~~~----~~~~~---------~~~~~--~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                 .++...    +....         ....+  ....+.+++.+||+.||++|||++|+++|
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~H  438 (467)
T PTZ00284        368 WAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTH  438 (467)
T ss_pred             HHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcC
Confidence                       000000    00000         00000  12346799999999999999999999874

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=6.1e-33  Score=294.71  Aligned_cols=245  Identities=17%  Similarity=0.185  Sum_probs=186.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEec------CCe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYN------RHQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~------~~~  677 (872)
                      ..|.  ..+.+|.|+||.||+|.. .+++.||+|.+.........+..|+.+++++ +||||+++++++..      .+.
T Consensus        16 ~~~~--~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   93 (282)
T cd06636          16 GIFE--LVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQ   93 (282)
T ss_pred             hhhh--hheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCE
Confidence            3455  778999999999999986 6788999999876555556778889999888 69999999999853      457


Q ss_pred             eEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      .|+||||+++|+|.+++..    ..++.....++.|++.|++|||+.   +|+|||+||+||++++++.++|+|||++..
T Consensus        94 ~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~~~~l~dfg~~~~  170 (282)
T cd06636          94 LWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  170 (282)
T ss_pred             EEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCcchhh
Confidence            8999999999999999864    246677788999999999999998   999999999999999999999999999865


Q ss_pred             ccccC--CCCcccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc
Q 002875          754 TQLAD--GSFPAKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       754 ~~~~~--~~~~~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      .....  .....+...|.+||...     ...++.++|||||||++|||+||+.||..........      ........
T Consensus       171 ~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~------~~~~~~~~  244 (282)
T cd06636         171 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALF------LIPRNPPP  244 (282)
T ss_pred             hhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhh------hHhhCCCC
Confidence            43211  11122344566777654     3456778999999999999999999986433211100      01011000


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                        .........++.+++.+||+.||.+|||+.|++++
T Consensus       245 --~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~  279 (282)
T cd06636         245 --KLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKH  279 (282)
T ss_pred             --CCcccccCHHHHHHHHHHhCCChhhCcCHHHHhcC
Confidence              01111234568899999999999999999999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=7.9e-33  Score=292.87  Aligned_cols=240  Identities=18%  Similarity=0.228  Sum_probs=190.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||.+....  ...+.+.+|+..+++++||||+++++++..++..|+||||+++|
T Consensus         8 ~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   87 (277)
T cd06641           8 KLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGG   87 (277)
T ss_pred             hheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCC
Confidence            778899999999999985 578999999986432  23567888999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          689 NLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       689 ~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      +|.+++.. ..++.....++.|++.|++|||+.   +++|+||||+||+++.++.++++|||++........  ....+.
T Consensus        88 ~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  164 (277)
T cd06641          88 SALDLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGT  164 (277)
T ss_pred             cHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCC
Confidence            99999875 457888899999999999999998   999999999999999999999999999865432211  112244


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .+|.+||.......+.++|||||||++|||+||..|+.......  ..    ....... .  ..........+.+++.+
T Consensus       165 ~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~--~~----~~~~~~~-~--~~~~~~~~~~~~~~i~~  235 (277)
T cd06641         165 PFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMK--VL----FLIPKNN-P--PTLEGNYSKPLKEFVEA  235 (277)
T ss_pred             ccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHH--HH----HHHhcCC-C--CCCCcccCHHHHHHHHH
Confidence            55778888777778889999999999999999998886432111  00    0000000 0  00111223457789999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.+|.+||+++|++++
T Consensus       236 ~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         236 CLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             HccCChhhCcCHHHHHhC
Confidence            999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=8.1e-33  Score=294.93  Aligned_cols=247  Identities=17%  Similarity=0.229  Sum_probs=193.3

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc-chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG-ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~-~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      .+.|.  ..+.+|.|+||.||+|.. .+++.||+|.+... ....+.+.+|+.++++++||||++++++|...+..|+||
T Consensus        18 ~~~~~--~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~   95 (293)
T cd06647          18 KKKYT--RFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVM   95 (293)
T ss_pred             hhhce--eeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEE
Confidence            35565  788999999999999985 57889999998643 234567788999999999999999999999999999999


Q ss_pred             cccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          683 DYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       683 ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      ||+++|+|.+++.+ ..++.++..++.|++.|++|||+.   +++|||+||+||+++.++.+||+|||++......... 
T Consensus        96 e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~  172 (293)
T cd06647          96 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR  172 (293)
T ss_pred             ecCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceeccccccccc
Confidence            99999999999976 457888899999999999999999   9999999999999999999999999987644322211 


Q ss_pred             -CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          761 -FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                       ...+...|.+||......++.++|||||||++||++||+.||............     ...+.  +...........+
T Consensus       173 ~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~l  245 (293)
T cd06647         173 STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLI-----ATNGT--PELQNPEKLSAIF  245 (293)
T ss_pred             ccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeeh-----hcCCC--CCCCCccccCHHH
Confidence             112334467788877777788999999999999999999998744321110000     00011  0011112233457


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||+.+|++||++++++.+
T Consensus       246 ~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         246 RDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             HHHHHHHccCChhhCcCHHHHhcC
Confidence            789999999999999999999866

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=1e-32  Score=290.03  Aligned_cols=243  Identities=22%  Similarity=0.274  Sum_probs=189.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||.||+|.. .+|+.||+|.+.....   ..+.+.+|++++++++|+||+++++++...+..++|+||+++
T Consensus         4 ~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (264)
T cd06626           4 RGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSG   83 (264)
T ss_pred             eeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCC
Confidence            678899999999999985 5789999999875433   466788999999999999999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC----
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF----  761 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~----  761 (872)
                      ++|.+++...  .++.....++.|++.|++|||+.   +|+|+||||+||++++++.+||+|||++..........    
T Consensus        84 ~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~  160 (264)
T cd06626          84 GTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEV  160 (264)
T ss_pred             CcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccc
Confidence            9999999775  57888889999999999999998   99999999999999999999999999986543221111    


Q ss_pred             --cccccccCchhhhcccC---CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          762 --PAKIAWTESGEFYNAMK---EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       762 --~~~~~~~~~~e~~~~~~---~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                        ..+...+.+||......   .+.++|||||||++||+++|+.||............  ...  ... .. .+......
T Consensus       161 ~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~--~~~--~~~-~~-~~~~~~~~  234 (264)
T cd06626         161 QSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFH--VGA--GHK-PP-IPDSLQLS  234 (264)
T ss_pred             cCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHH--Hhc--CCC-CC-CCcccccC
Confidence              11223356777766544   788899999999999999999998654321111100  000  000 00 11111223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+.+++.+||+.||.+|||++|++.+
T Consensus       235 ~~~~~li~~~l~~~p~~R~~~~~i~~~  261 (264)
T cd06626         235 PEGKDFLDRCLESDPKKRPTASELLQH  261 (264)
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            456788999999999999999998753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=1.1e-32  Score=290.58  Aligned_cols=244  Identities=18%  Similarity=0.204  Sum_probs=185.5

Q ss_pred             chhhhccCCCCCceeeeecCC--CcEEEEEEeecc-----------chhHHHHHHHHHHhhc-cCCCCceeEEEEEecCC
Q 002875          611 TECEEAARPQSAAGCKAVLPT--GITVSVKKIEWG-----------ATRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRH  676 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~--g~~vavK~~~~~-----------~~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~  676 (872)
                      ...+.+|+|+||.||+|....  ++.+|||.+...           ......+..|+.++.+ ++||||+++++++.+++
T Consensus         3 ~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~   82 (269)
T cd08528           3 AVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEND   82 (269)
T ss_pred             hhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCC
Confidence            378899999999999999754  788999988532           1123445667777764 79999999999999999


Q ss_pred             eeEEEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEcccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFG  749 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg  749 (872)
                      ..++||||+++++|.+++..      ..++...+.++.|++.|++|||+ .   +++||||||+||++++++.+|++|||
T Consensus        83 ~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~i~H~dl~~~nil~~~~~~~~l~dfg  159 (269)
T cd08528          83 RLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEK---RIVHRDLTPNNIMLGEDDKVTITDFG  159 (269)
T ss_pred             eEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCC---ceeecCCCHHHEEECCCCcEEEeccc
Confidence            99999999999999988742      34677889999999999999996 5   89999999999999999999999999


Q ss_pred             ccccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCC
Q 002875          750 FKYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       750 ~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      ++........ ....+...|.+||......++.++|||||||++|||+||+.|+........      ..........+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~------~~~~~~~~~~~~  233 (269)
T cd08528         160 LAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSL------ATKIVEAVYEPL  233 (269)
T ss_pred             ceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHHH------HHHHhhccCCcC
Confidence            9875433221 112233346778887777788899999999999999999988864321110      001111110000


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ..  ......+.+++.+||+.||++||++.|+.++++
T Consensus       234 ~~--~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         234 PE--GMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             Cc--ccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            00  112345778999999999999999999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=1.2e-32  Score=288.19  Aligned_cols=241  Identities=15%  Similarity=0.173  Sum_probs=188.2

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec-CCeeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN-RHQAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lv~ey~  685 (872)
                      ...+.+|+|++|.||++.. .+|+.||||++....   ...+.+.+|++++++++|||++++++.+.. +...|+||||+
T Consensus         3 ~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~   82 (257)
T cd08223           3 CFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFC   82 (257)
T ss_pred             eEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEeccc
Confidence            3778899999999999985 467899999996532   234567889999999999999999998764 44689999999


Q ss_pred             CCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--
Q 002875          686 PNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--  759 (872)
Q Consensus       686 ~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--  759 (872)
                      ++|+|.+++..    ..++.+...++.|++.|++|+|+.   +|+||||||+||+++.++.++|+|||++........  
T Consensus        83 ~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~  159 (257)
T cd08223          83 EGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMA  159 (257)
T ss_pred             CCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEecccCCcc
Confidence            99999999864    257888999999999999999999   999999999999999999999999999875432211  


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ....+...|.+||......++.++||||+||++|||+||+.||...... ..     ........ .  .+........+
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~-~~-----~~~~~~~~-~--~~~~~~~~~~~  230 (257)
T cd08223         160 STLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMN-SL-----VYRIIEGK-L--PPMPKDYSPEL  230 (257)
T ss_pred             ccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH-HH-----HHHHHhcC-C--CCCccccCHHH
Confidence            1122344578889888878888999999999999999999988643211 00     00110100 0  01112233567


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+|++.||++|||+.|++++
T Consensus       231 ~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         231 GELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             HHHHHHHhccCcccCCCHHHHhcC
Confidence            899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.1e-32  Score=293.30  Aligned_cols=249  Identities=18%  Similarity=0.237  Sum_probs=195.4

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.|.  ..+.+|.|++|.||+|... +++.||+|++.......+.+.+|++.+++++|+||+++++++...+..|+||
T Consensus        17 ~~~~~~--~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   94 (286)
T cd06614          17 PRELYK--NLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVM   94 (286)
T ss_pred             ccccch--HhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEE
Confidence            334455  7789999999999999975 7899999999865545667888999999999999999999999999999999


Q ss_pred             cccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+++++|.+++...   .++.++..++.|++.|++|||..   +|+|+|+||+||+++.++.+||+|||++........
T Consensus        95 e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  171 (286)
T cd06614          95 EYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS  171 (286)
T ss_pred             eccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhhccchh
Confidence            999999999999764   58888999999999999999998   999999999999999999999999998754332211


Q ss_pred             --CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          760 --SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       760 --~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                        ....+...|.+||......++.++|||||||++|||+||+.|+.........      ....... ............
T Consensus       172 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~  244 (286)
T cd06614         172 KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRAL------FLITTKG-IPPLKNPEKWSP  244 (286)
T ss_pred             hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHH------HHHHhcC-CCCCcchhhCCH
Confidence              1112334577888877777889999999999999999999988643221100      0000000 000111111335


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .+.+++.+|++.+|.+|||+.+++++-
T Consensus       245 ~l~~li~~~l~~~p~~Rpt~~~il~~~  271 (286)
T cd06614         245 EFKDFLNKCLVKDPEKRPSAEELLQHP  271 (286)
T ss_pred             HHHHHHHHHhccChhhCcCHHHHhhCh
Confidence            677899999999999999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=1.2e-32  Score=290.93  Aligned_cols=244  Identities=18%  Similarity=0.210  Sum_probs=182.8

Q ss_pred             hhhhccCCCCCceeeeec----CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCC------ee
Q 002875          612 ECEEAARPQSAAGCKAVL----PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH------QA  678 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~  678 (872)
                      ..+.+|+|+||.||+|..    .+|+.||||++...   ....+.+.+|++++++++||||+++++++...+      ..
T Consensus         3 ~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   82 (273)
T cd05074           3 LGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIP   82 (273)
T ss_pred             chhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccce
Confidence            567899999999999975    35789999998753   233556788999999999999999999986532      34


Q ss_pred             EEEEcccCCCChHHHhhC--------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT--------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~--------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                      ++++||+++|+|.+++..        ..++.....++.|++.|++|||+.   +|+||||||+||++++++.+|++|||+
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~dfg~  159 (273)
T cd05074          83 MVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADFGL  159 (273)
T ss_pred             EEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECcccc
Confidence            789999999999988742        246777899999999999999998   999999999999999999999999999


Q ss_pred             cccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccc
Q 002875          751 KYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENE  825 (872)
Q Consensus       751 ~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  825 (872)
                      ++.......    ........+.+||......++.++|||||||++|||++ |..|+.... ....     .........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~-~~~~-----~~~~~~~~~  233 (273)
T cd05074         160 SKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE-NSEI-----YNYLIKGNR  233 (273)
T ss_pred             cccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC-HHHH-----HHHHHcCCc
Confidence            875432111    11111223456676666667889999999999999999 556654322 1110     000000000


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ....   ......+.+++.+||+.+|++|||+.|+++.|+++
T Consensus       234 ~~~~---~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         234 LKQP---PDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             CCCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            1001   12235688999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=3e-33  Score=297.88  Aligned_cols=249  Identities=23%  Similarity=0.305  Sum_probs=186.9

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||.||+|... +|+.||+|++.....   ..+.+.+|++++++++||||+++++++.+++..|+||||+++
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   84 (286)
T cd07846           5 NLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDH   84 (286)
T ss_pred             EeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCc
Confidence            7789999999999999974 689999999864322   245678899999999999999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      ++|.++...  ..++.+...++.|+++|++|||+.   +|+|||+||+||++++++.+|++|||++.........  ...
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  161 (286)
T cd07846          85 TVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYV  161 (286)
T ss_pred             cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCccc
Confidence            999888764  357899999999999999999998   9999999999999999999999999998654322211  112


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc--------cc----------cccccccccc
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP--------ID----------GLLGEMYNEN  824 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~--------~~----------~~~~~~~~~~  824 (872)
                      +..+|.+||+..+ ..++.++|||||||++|||+||+.||..........        ..          .....+..+.
T Consensus       162 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (286)
T cd07846         162 ATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPE  241 (286)
T ss_pred             ceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcccccc
Confidence            3445667787654 446778999999999999999988876433110000        00          0000000000


Q ss_pred             ccCCCC---chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSS---SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~---~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .....+   ..+.....+.+++.+||+.+|++||+++|++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  283 (286)
T cd07846         242 VKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHH  283 (286)
T ss_pred             ccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcC
Confidence            000000   011234568899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=2.1e-32  Score=289.47  Aligned_cols=239  Identities=12%  Similarity=0.050  Sum_probs=178.9

Q ss_pred             hccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHH---hhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          615 EAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~---l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      .+|+|+||.||++.. .+|+.||||.+.....    ....+.+|...   +...+||||+++++++.+++..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            479999999999986 5689999999865321    12233444433   334579999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++..  ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.+|++|||++............+
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVG  157 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCC
Confidence            9999999865  358888999999999999999999   99999999999999999999999999986443222222234


Q ss_pred             ccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||... +..++.++||||+||++|||+||..||..........    ...........   .......++.+++
T Consensus       158 ~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~li  230 (279)
T cd05633         158 THGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE----IDRMTLTVNVE---LPDSFSPELKSLL  230 (279)
T ss_pred             CcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHH----HHHHhhcCCcC---CccccCHHHHHHH
Confidence            44567777764 4567889999999999999999999987433211100    01110000010   1112334677888


Q ss_pred             HHcccCCCCCCC-----CHHHHHHH
Q 002875          844 LLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      .+|++.||++||     |++|++++
T Consensus       231 ~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         231 EGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             HHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            999999999999     59999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-32  Score=289.37  Aligned_cols=241  Identities=19%  Similarity=0.250  Sum_probs=186.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc--chhHHHHHHHHHHhhccC---CCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|+. .+|+.||||.+...  ....+.+.+|+.++++++   ||||++++++|.+....++||||+
T Consensus         5 ~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06917           5 RLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYA   84 (277)
T ss_pred             hhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecC
Confidence            678899999999999995 67999999998653  233556788999999887   999999999999999999999999


Q ss_pred             CCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Cc
Q 002875          686 PNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FP  762 (872)
Q Consensus       686 ~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~  762 (872)
                      ++++|.++++. ..++.....++.|++.|++|||+.   +|+||||+|+||++++++.++++|||++.........  ..
T Consensus        85 ~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~  161 (277)
T cd06917          85 EGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTF  161 (277)
T ss_pred             CCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccc
Confidence            99999999876 347888899999999999999998   9999999999999999999999999998654332211  11


Q ss_pred             ccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          763 AKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       763 ~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      .+...|.+||... +..++.++|||||||++|||++|..||..........   .......+. .  ..  .....++.+
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~---~~~~~~~~~-~--~~--~~~~~~~~~  233 (277)
T cd06917         162 VGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMM---LIPKSKPPR-L--ED--NGYSKLLRE  233 (277)
T ss_pred             cCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhh---ccccCCCCC-C--Cc--ccCCHHHHH
Confidence            2333456677654 3456888999999999999999999986443211110   000000000 0  00  113356788


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+||+.||++||++.|++++
T Consensus       234 ~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         234 FVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             HHHHHcCCCcccCcCHHHHhhC
Confidence            9999999999999999999864

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.6e-32  Score=291.57  Aligned_cols=242  Identities=16%  Similarity=0.252  Sum_probs=189.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|+|++|.||+|.. .+|+.||+|++..... ..+.+.+|+.++++++||||+++++++...++.++|+||+++++
T Consensus        23 ~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~  102 (285)
T cd06648          23 NFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGA  102 (285)
T ss_pred             cceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCC
Confidence            567999999999999985 5788999999864332 34567889999999999999999999999999999999999999


Q ss_pred             hHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccccc
Q 002875          690 LSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIA  766 (872)
Q Consensus       690 L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~  766 (872)
                      |.+++.. ..++.+...++.|++.|++|||+.   +|+||||||+||+++.++.++++|||++........  ....+..
T Consensus       103 L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~  179 (285)
T cd06648         103 LTDIVTHTRMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTP  179 (285)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCc
Confidence            9999876 357888899999999999999998   999999999999999999999999998764322111  1112445


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .|.+||......++.++|||||||++|||++|+.||........  . ........+.    ..........+.+++.+|
T Consensus       180 ~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~--~-~~~~~~~~~~----~~~~~~~~~~l~~li~~~  252 (285)
T cd06648         180 YWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQA--M-KRIRDNLPPK----LKNLHKVSPRLRSFLDRM  252 (285)
T ss_pred             cccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHH--H-HHHHhcCCCC----CcccccCCHHHHHHHHHH
Confidence            57788888777788899999999999999999999875432110  0 0001110000    111111234678999999


Q ss_pred             ccCCCCCCCCHHHHHHH
Q 002875          847 TRSTPSDRPSMEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~  863 (872)
                      |..+|++|||++|++++
T Consensus       253 l~~~p~~Rpt~~~il~~  269 (285)
T cd06648         253 LVRDPAQRATAAELLNH  269 (285)
T ss_pred             cccChhhCcCHHHHccC
Confidence            99999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=1.5e-33  Score=273.17  Aligned_cols=253  Identities=21%  Similarity=0.249  Sum_probs=186.7

Q ss_pred             cCcchhhhccCCCCCceeeeecC---C--CcEEEEEEeeccchh---HHHHHHHHHHhhccCCCCceeEEEEEec-CCee
Q 002875          608 FNSTECEEAARPQSAAGCKAVLP---T--GITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYN-RHQA  678 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~~---~--g~~vavK~~~~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~  678 (872)
                      |.|+....||+|+||.||||+-.   +  .+.+|+|+++..+..   .....+|+.+++.++|||||.+..++.+ +..+
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v  103 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKV  103 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceE
Confidence            44558999999999999999642   2  347999999754322   4456788999999999999999999887 7889


Q ss_pred             EEEEcccCCCChHHHhhCC-------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC----CCeeEcc
Q 002875          679 YLLYDYLPNGNLSEKIRTK-------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN----MEPHLAE  747 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~-------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~----~~~ki~d  747 (872)
                      ++|+||++. ||.+.|+-.       .+-...+.|+.||+.|+.|||+.   =|+|||+||+||++..+    |.+||+|
T Consensus       104 ~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  104 WLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             EEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCeeEeec
Confidence            999999987 999988642       24456678999999999999999   79999999999999877    8999999


Q ss_pred             ccccccccccCCCC-----cccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC--Ccccc-----
Q 002875          748 FGFKYLTQLADGSF-----PAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ--NKPID-----  814 (872)
Q Consensus       748 fg~~~~~~~~~~~~-----~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~--~~~~~-----  814 (872)
                      +|+++.+...-...     ..-+-||.+||..- ...|+.+.||||.|||..||+|-++.|...+...  ..+..     
T Consensus       180 lGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~  259 (438)
T KOG0666|consen  180 LGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLD  259 (438)
T ss_pred             ccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHH
Confidence            99999876543221     22456888888765 4568899999999999999999888776433211  11111     


Q ss_pred             ---ccccccccccccCC--CCch-----------------HH-------HHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          815 ---GLLGEMYNENEVGS--SSSL-----------------QD-------EIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       815 ---~~~~~~~~~~~~~~--~~~~-----------------~~-------~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                         ..++...+..++..  .++.                 ..       -.+..+++..+++..||.+|.|+++++++-
T Consensus       260 rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~  338 (438)
T KOG0666|consen  260 RIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHP  338 (438)
T ss_pred             HHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhccc
Confidence               11111111111100  0000                 00       011367899999999999999999998753

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=2.4e-32  Score=287.73  Aligned_cols=245  Identities=20%  Similarity=0.279  Sum_probs=189.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|.|+||.||+|.. .+|..||+|++....  ...+.+.+|++.+++++|+||+++++.+..++..++||||++++
T Consensus         5 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~   84 (267)
T cd06610           5 LIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGG   84 (267)
T ss_pred             eeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCC
Confidence            778899999999999985 578899999986432  24567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---
Q 002875          689 NLSEKIRT-----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---  760 (872)
Q Consensus       689 ~L~~~l~~-----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---  760 (872)
                      +|.++++.     ..++.....++.|++.|++|||+.   +|+||||||+||++++++.+|++|||++.........   
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~  161 (267)
T cd06610          85 SLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRK  161 (267)
T ss_pred             cHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHhccCcccccc
Confidence            99999865     247788889999999999999998   9999999999999999999999999998654322211   


Q ss_pred             ---CcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 ---FPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 ---~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                         ...+...|.+||..... ..+.++|||||||++|||+||+.||........  ........  +.............
T Consensus       162 ~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~  237 (267)
T cd06610         162 VRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKV--LMLTLQND--PPSLETGADYKKYS  237 (267)
T ss_pred             ccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhh--HHHHhcCC--CCCcCCcccccccc
Confidence               11133446677776554 678889999999999999999999875432110  11111110  00010011112334


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+.+++.+||+.||++||+++|++++
T Consensus       238 ~~~~~li~~~l~~~p~~Rp~~~~ll~~  264 (267)
T cd06610         238 KSFRKMISLCLQKDPSKRPTAEELLKH  264 (267)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            567899999999999999999999864

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.3e-32  Score=292.84  Aligned_cols=242  Identities=15%  Similarity=0.248  Sum_probs=189.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ....+|+|+||.||+|.. .+|+.||||++.... ...+.+.+|+..+++++||||+++++++...+..++||||+++++
T Consensus        24 ~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  103 (292)
T cd06657          24 NFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA  103 (292)
T ss_pred             hHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCc
Confidence            457899999999999986 679999999986533 245568889999999999999999999999999999999999999


Q ss_pred             hHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccccc
Q 002875          690 LSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIA  766 (872)
Q Consensus       690 L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~  766 (872)
                      |.+++.. ..++.....++.|++.|++|||+.   +++||||||+||++++++.++++|||++........  ....+..
T Consensus       104 L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  180 (292)
T cd06657         104 LTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTP  180 (292)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCc
Confidence            9998865 458888899999999999999998   999999999999999999999999998764332211  1122344


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .|.+||......++.++||||+||++|||+||..||........   .........+.    ..........+.+++.+|
T Consensus       181 ~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~l~~li~~~  253 (292)
T cd06657         181 YWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA---MKMIRDNLPPK----LKNLHKVSPSLKGFLDRL  253 (292)
T ss_pred             cccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHhhCCcc----cCCcccCCHHHHHHHHHH
Confidence            57788887777788899999999999999999998864322110   00011111111    011112234567888999


Q ss_pred             ccCCCCCCCCHHHHHHH
Q 002875          847 TRSTPSDRPSMEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~  863 (872)
                      |+.||.+||+++|++++
T Consensus       254 l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         254 LVRDPAQRATAAELLKH  270 (292)
T ss_pred             HhCCcccCcCHHHHhcC
Confidence            99999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-32  Score=291.19  Aligned_cols=248  Identities=19%  Similarity=0.249  Sum_probs=182.7

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|++|.||+|... +|+.||||.+.....  ....+.+|++++++++||||+++++++.+.+..++||||+++ 
T Consensus         9 ~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-   87 (291)
T cd07844           9 KLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLDT-   87 (291)
T ss_pred             EEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCCC-
Confidence            7789999999999999864 789999999865322  234567899999999999999999999999999999999984 


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      +|.+++..   ..++.+...++.|+++||.|||+.   +|+||||||+||++++++.+|++|||+++........  ...
T Consensus        88 ~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  164 (291)
T cd07844          88 DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEV  164 (291)
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccccccCCCCccccccc
Confidence            99998865   346778889999999999999998   9999999999999999999999999998643221111  111


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc----------ccccccc------ccccccc
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP----------IDGLLGE------MYNENEV  826 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~----------~~~~~~~------~~~~~~~  826 (872)
                      ....+.+||...+ ..++.++||||+||++|||++|+.||..........          .......      .......
T Consensus       165 ~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T cd07844         165 VTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFP  244 (291)
T ss_pred             cccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhcccccccccc
Confidence            2334667787654 457788999999999999999998886443110000          0000000      0000000


Q ss_pred             C-CCCch----HHH--HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 G-SSSSL----QDE--IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~-~~~~~----~~~--~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      . .....    ...  ...+.+++.+|++.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~  288 (291)
T cd07844         245 FYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKH  288 (291)
T ss_pred             ccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcC
Confidence            0 00000    011  1466789999999999999999998753

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=3e-32  Score=298.75  Aligned_cols=254  Identities=22%  Similarity=0.261  Sum_probs=190.3

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC----
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR----  675 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~----  675 (872)
                      +.+.|.  ..+.+|+|+||.||+|.. .+|+.||||.+...   ....+.+.+|+.++++++||||+++++++...    
T Consensus        14 ~~~~y~--~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (353)
T cd07850          14 VLKRYQ--NLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLE   91 (353)
T ss_pred             hhcceE--EEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcc
Confidence            345566  788999999999999985 57999999998642   22345677899999999999999999998643    


Q ss_pred             --CeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          676 --HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       676 --~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                        ...|+||||++ |+|.+.+....+..+...++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||+++.
T Consensus        92 ~~~~~~lv~e~~~-~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  167 (353)
T cd07850          92 EFQDVYLVMELMD-ANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLART  167 (353)
T ss_pred             ccCcEEEEEeccC-CCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCcccee
Confidence              35799999996 599998887788888899999999999999999   999999999999999999999999999875


Q ss_pred             ccccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------ccc---c----c
Q 002875          754 TQLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------PID---G----L  816 (872)
Q Consensus       754 ~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~~~---~----~  816 (872)
                      ....... ...+...|.+||...+..++.++||||+||++|||++|+.||...+....+         +..   .    .
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (353)
T cd07850         168 AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPT  247 (353)
T ss_pred             CCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhh
Confidence            4332211 112344577888888888899999999999999999999998644311000         000   0    0


Q ss_pred             cccccccccc-----------------CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 LGEMYNENEV-----------------GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........+.                 ............+.+++.+|++.||++|||++|++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         248 VRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             hhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            0000000000                 0000011224457899999999999999999999865

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=3e-32  Score=286.57  Aligned_cols=243  Identities=18%  Similarity=0.205  Sum_probs=193.4

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|++|.||+|+.. +|+.||||++....  ...+.+.+|++.+.+++||||+++++++...+..++||||++++
T Consensus         5 ~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (264)
T cd06623           5 RVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGG   84 (264)
T ss_pred             eeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCC
Confidence            6789999999999999975 59999999987654  34677889999999999999999999999999999999999999


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      +|.+++..  ..+......++.|+++|++|+|+ .   +++||||+|+||+++.++.++++|||.+.........  ...
T Consensus        85 ~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~  161 (264)
T cd06623          85 SLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFV  161 (264)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceecccCCCccccee
Confidence            99999974  45778889999999999999999 8   9999999999999999999999999998754332222  122


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH-HHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD-EIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l  842 (872)
                      +...|.+||......++.++||||||+++|||+||+.|+.......   .......+.........   .. ....+.++
T Consensus       162 ~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~l~~l  235 (264)
T cd06623         162 GTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPS---FFELMQAICDGPPPSLP---AEEFSPEFRDF  235 (264)
T ss_pred             ecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccC---HHHHHHHHhcCCCCCCC---cccCCHHHHHH
Confidence            3445677888877788889999999999999999999986543211   00111111111111111   11 34567889


Q ss_pred             HHHcccCCCCCCCCHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+|+..+|++||++.|++++
T Consensus       236 i~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         236 ISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             HHHHccCChhhCCCHHHHHhC
Confidence            999999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=2.1e-32  Score=294.07  Aligned_cols=244  Identities=23%  Similarity=0.265  Sum_probs=186.3

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      .+.|.  ..+.+|+|+||.||+|+. .+|+.||+|.+....    ...+.+.+|++++++++||||++++++|.+++..|
T Consensus        14 ~~~y~--~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~   91 (307)
T cd06607          14 EKLFT--DLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAW   91 (307)
T ss_pred             chhhh--hheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEE
Confidence            34455  788999999999999986 468999999986432    23456788999999999999999999999999999


Q ss_pred             EEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      +||||++ |++.+.+..   ..++.....++.|++.||.|||+.   +|+||||+|+||++++++.+||+|||++.....
T Consensus        92 lv~e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~  167 (307)
T cd06607          92 LVMEYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLVSP  167 (307)
T ss_pred             EEHHhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceecCC
Confidence            9999997 577777643   458888899999999999999998   999999999999999999999999999865432


Q ss_pred             cCCCCcccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          757 ADGSFPAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       757 ~~~~~~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                      ..  ...+...|.+||...   ...++.++|||||||++|||+||..|+........      ........ .. .....
T Consensus       168 ~~--~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~------~~~~~~~~-~~-~~~~~  237 (307)
T cd06607         168 AN--SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQND-SP-TLSSN  237 (307)
T ss_pred             CC--CccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHH------HHHHhcCC-CC-CCCch
Confidence            21  112333466777653   34577889999999999999999998864321110      00000000 00 00011


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .....+.+++.+||+.||++||++.+++.+.
T Consensus       238 ~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  268 (307)
T cd06607         238 DWSDYFRNFVDSCLQKIPQDRPSSEELLKHR  268 (307)
T ss_pred             hhCHHHHHHHHHHhcCChhhCcCHHHHhcCh
Confidence            2345678899999999999999999998754

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.7e-32  Score=286.91  Aligned_cols=241  Identities=17%  Similarity=0.188  Sum_probs=188.1

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...+.+|+|+||.||++.. .+++.||||.+....   ...+.+.+|++++++++||||+++++++..++..++||||++
T Consensus         3 ~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd08220           3 EKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAP   82 (256)
T ss_pred             eEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCC
Confidence            3778999999999999885 578899999986532   345678889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEccccccccccccCCC-
Q 002875          687 NGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       687 ~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      +|+|.+++...    .++.....++.|+++|++|+|+.   +|+||||||+||+++++ +.+|++|||++......... 
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~  159 (256)
T cd08220          83 GGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAY  159 (256)
T ss_pred             CCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcccc
Confidence            99999999752    47788889999999999999998   99999999999999855 46899999998754332211 


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+...|.+||.......+.++|||||||++|||+||+.|+....... .     .............   ......+.
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~---~~~~~~l~  230 (256)
T cd08220         160 TVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPA-L-----VLKIMSGTFAPIS---DRYSPDLR  230 (256)
T ss_pred             ccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHH-H-----HHHHHhcCCCCCC---CCcCHHHH
Confidence            1123344677888777778889999999999999999999886433211 0     0011110000001   11234577


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||+.||++|||++|++++
T Consensus       231 ~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         231 QLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             HHHHHHccCChhhCCCHHHHhhC
Confidence            89999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=2.5e-32  Score=287.21  Aligned_cols=240  Identities=15%  Similarity=0.175  Sum_probs=183.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc------hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~  682 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||.+....      ...+.+.+|+.++++++||||+++++++.+.  ...++||
T Consensus         6 ~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~   85 (265)
T cd06652           6 LGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFM   85 (265)
T ss_pred             EeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEE
Confidence            678999999999999986 568999999985321      2245778899999999999999999998764  4688999


Q ss_pred             cccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc---
Q 002875          683 DYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA---  757 (872)
Q Consensus       683 ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~---  757 (872)
                      ||+++|+|.+++..  ..++.....++.|++.||+|||+.   +|+|+||||+||+++.++.+||+|||+++.....   
T Consensus        86 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~  162 (265)
T cd06652          86 EHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLS  162 (265)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCcccccccccccc
Confidence            99999999999865  347777889999999999999999   9999999999999999999999999988643211   


Q ss_pred             --CCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          758 --DGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       758 --~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                        ......+...|.+||......++.++|||||||++|||++|+.||........      ..........  .......
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~------~~~~~~~~~~--~~~~~~~  234 (265)
T cd06652         163 GTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAA------IFKIATQPTN--PVLPPHV  234 (265)
T ss_pred             ccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHH------HHHHhcCCCC--CCCchhh
Confidence              11111233346778877777788899999999999999999999864321110      0011100000  1111233


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...+.+++.+|+. +|++||+++|++++
T Consensus       235 ~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         235 SDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             CHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence            3456778888885 99999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.8e-32  Score=294.29  Aligned_cols=244  Identities=14%  Similarity=0.114  Sum_probs=185.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||++.. .+++.||+|.+....    ...+.+.+|+++++.++||||+++++.+.+++..++||||++
T Consensus         5 ~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   84 (305)
T cd05609           5 TIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVE   84 (305)
T ss_pred             EeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCC
Confidence            678899999999999985 568899999987543    234567789999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-----
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-----  759 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-----  759 (872)
                      +|+|.+++...  .++.....++.|++.|++|||+.   +++||||||+||+++.++.+|++|||+++.......     
T Consensus        85 g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~  161 (305)
T cd05609          85 GGDCATLLKNIGALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYE  161 (305)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccc
Confidence            99999999653  46778888999999999999998   999999999999999999999999998763210000     


Q ss_pred             ------------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          760 ------------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       760 ------------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                                  ....+...|.+||......++.++|||||||++|||+||..||.+.....      ......... ..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~------~~~~~~~~~-~~  234 (305)
T cd05609         162 GHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE------LFGQVISDD-IE  234 (305)
T ss_pred             cccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhcc-cC
Confidence                        00112334667787777778899999999999999999999987432110      011111110 00


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      .+.........+.+++.+||+.||++||++.++.+.++
T Consensus       235 ~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~  272 (305)
T cd05609         235 WPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQ  272 (305)
T ss_pred             CCCccccCCHHHHHHHHHHhccChhhccCccCHHHHHh
Confidence            00000122345789999999999999999655555443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-32  Score=288.29  Aligned_cols=246  Identities=20%  Similarity=0.218  Sum_probs=187.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecCC------e
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRH------Q  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~------~  677 (872)
                      +.|.  ..+.+|.|++|.||+|.. .+++.||+|.+.......+.+.+|+.+++++ +||||+++++++.+..      .
T Consensus         6 ~~y~--~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (275)
T cd06608           6 GIFE--LVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQ   83 (275)
T ss_pred             hhee--heeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceE
Confidence            3455  788999999999999997 4678999999987665667789999999998 6999999999997644      4


Q ss_pred             eEEEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      .++||||+++++|.+++..      ..++.....++.|+++|++|||+.   +++|+||+|+||++++++.+|++|||++
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~~~~  160 (275)
T cd06608          84 LWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVS  160 (275)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCCccc
Confidence            8999999999999998754      346788889999999999999998   9999999999999999999999999998


Q ss_pred             ccccccCC--CCcccccccCchhhhcc-----cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc
Q 002875          752 YLTQLADG--SFPAKIAWTESGEFYNA-----MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN  824 (872)
Q Consensus       752 ~~~~~~~~--~~~~~~~~~~~~e~~~~-----~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  824 (872)
                      ........  ....+...|.+||....     ..++.++|||||||++|||+||+.||........      ..++....
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~~~  234 (275)
T cd06608         161 AQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRA------LFKIPRNP  234 (275)
T ss_pred             eecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHH------HHHhhccC
Confidence            65432111  11223344666776532     3466789999999999999999999864321110      01111110


Q ss_pred             ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       .............+.+++.+||..||++|||++|++++
T Consensus       235 -~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~  272 (275)
T cd06608         235 -PPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLEH  272 (275)
T ss_pred             -CCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence             00011112234567899999999999999999999864

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=4.5e-32  Score=284.10  Aligned_cols=241  Identities=21%  Similarity=0.291  Sum_probs=187.1

Q ss_pred             hhhhccCCCCCceeeeecCC-----CcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLPT-----GITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-----g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|+||.||++....     +..||+|.+.....  ..+.+.+|++.+++++||||+++++++.+.+..++||||
T Consensus         3 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~   82 (258)
T smart00219        3 LGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEY   82 (258)
T ss_pred             ccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEec
Confidence            56789999999999998643     48899999976543  466888999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          685 LPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       685 ~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      +++|+|.+++...    .++.+...++.|++.|++|||+.   +++||||||+||++++++.++++|||++.........
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~  159 (258)
T smart00219       83 MEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYY  159 (258)
T ss_pred             cCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceeccccccc
Confidence            9999999998642    67888999999999999999999   9999999999999999999999999998654432111


Q ss_pred             Cc---ccccccCchhhhcccCCcccccchhHHHHHHHHHcC-CCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 FP---AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN-GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 ~~---~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      ..   .....+.+||......++.++||||+||++|||+++ ..|+.. .....     ..............   ....
T Consensus       160 ~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~-~~~~~-----~~~~~~~~~~~~~~---~~~~  230 (258)
T smart00219      160 KKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG-MSNEE-----VLEYLKKGYRLPKP---ENCP  230 (258)
T ss_pred             ccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC-CCHHH-----HHHHHhcCCCCCCC---CcCC
Confidence            11   122346677877777788999999999999999994 455443 21110     00011111101111   1133


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .++.+++.+|+..||++|||+.|+++.|
T Consensus       231 ~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      231 PEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             HHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            5677899999999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=7.6e-33  Score=294.21  Aligned_cols=241  Identities=19%  Similarity=0.229  Sum_probs=189.9

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      .....||+|.|++|..|+. .+|..||||.+.+.+.   ....+.+|+++|+.++|||||+++.+.+.+...|+||||+.
T Consensus        59 ~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~  138 (596)
T KOG0586|consen   59 VIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYAS  138 (596)
T ss_pred             eeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEecc
Confidence            3788999999999999984 6899999999976432   33447889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCcc
Q 002875          687 NGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPA  763 (872)
Q Consensus       687 ~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~~  763 (872)
                      +|.+++++.+..  .......++.|+..|++|+|++   .|+|||||++||+|+.+..+||+|||++..+..... ...+
T Consensus       139 ~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lqt~c  215 (596)
T KOG0586|consen  139 GGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQTFC  215 (596)
T ss_pred             CchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccceeecccccccccC
Confidence            999999998743  3355667899999999999999   999999999999999999999999999977653322 2234


Q ss_pred             cccccCchhhhcccC-CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMK-EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~-~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      +.+.|++||++.+.+ .++++|+||+||++|-|+.|.-||++..-..-..  ..+..-+.   ++     --...++-++
T Consensus       216 gsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~--rvl~gk~r---Ip-----~~ms~dce~l  285 (596)
T KOG0586|consen  216 GSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRP--RVLRGKYR---IP-----FYMSCDCEDL  285 (596)
T ss_pred             CCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccc--hheeeeec---cc-----ceeechhHHH
Confidence            566688999887654 5688999999999999999999998543211100  00000000   10     0112345677


Q ss_pred             HHHcccCCCCCCCCHHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      +.+.+..+|.+|++++++.++-
T Consensus       286 Lrk~lvl~Pskr~~~dqim~~~  307 (596)
T KOG0586|consen  286 LRKFLVLNPSKRGPCDQIMKDR  307 (596)
T ss_pred             HHHhhccCccccCCHHHhhhhc
Confidence            7778889999999999998653

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=6.7e-33  Score=294.82  Aligned_cols=248  Identities=19%  Similarity=0.226  Sum_probs=183.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|.|++|.||+|+. .+|+.||||++.....   ..+.+.+|++++++++||||+++++++.+.+..++||||++ 
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-   82 (284)
T cd07860           4 KVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-   82 (284)
T ss_pred             eeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc-
Confidence            778899999999999986 5789999999864322   23567889999999999999999999999999999999996 


Q ss_pred             CChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC--
Q 002875          688 GNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF--  761 (872)
Q Consensus       688 g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~--  761 (872)
                      ++|.+++..    ..++.+...++.|+++|++|||+.   +++||||||+||++++++.+|++|||++..........  
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~  159 (284)
T cd07860          83 QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTH  159 (284)
T ss_pred             cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhcccCcccccc
Confidence            689888854    347888899999999999999998   99999999999999999999999999986543221111  


Q ss_pred             cccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-ccc--------------ccccccccc
Q 002875          762 PAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DGL--------------LGEMYNENE  825 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~~--------------~~~~~~~~~  825 (872)
                      ..+..+|.+||...+ ..++.++|||||||++|||+||+.||........... ...              ..+.....+
T Consensus       160 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (284)
T cd07860         160 EVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFP  239 (284)
T ss_pred             ccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcc
Confidence            113345667776654 3357789999999999999999998864332100000 000              000000000


Q ss_pred             cCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          826 VGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       826 ~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .......    ......+.+++.+|++.||++|||++|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  281 (284)
T cd07860         240 KWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAH  281 (284)
T ss_pred             cccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcC
Confidence            0000000    1123456789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.1e-32  Score=288.58  Aligned_cols=242  Identities=16%  Similarity=0.120  Sum_probs=190.0

Q ss_pred             chhhhccCCCCCceeeeecC-CCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ...+.+|.|+||.||+|... +|+.||+|.+....    ...+.+.+|++.+++++||||+++++++.+++..++||||+
T Consensus         3 ~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   82 (258)
T cd05578           3 ELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLL   82 (258)
T ss_pred             eEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCC
Confidence            37788999999999999974 69999999997532    34567889999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCc
Q 002875          686 PNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFP  762 (872)
Q Consensus       686 ~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~  762 (872)
                      ++++|.+++...  .+..+...++.|+++|++|||..   +++|+||||+||++++++.++++|||.+........ ...
T Consensus        83 ~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~  159 (258)
T cd05578          83 LGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTST  159 (258)
T ss_pred             CCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccCCCcccccc
Confidence            999999999754  56778889999999999999998   999999999999999999999999999865432211 112


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      .+...|.+||.......+.++||||+|+++|||+||..|+.................   .. ...+   ......+.++
T Consensus       160 ~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~-~~~~---~~~~~~~~~~  232 (258)
T cd05578         160 SGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET---AD-VLYP---ATWSTEAIDA  232 (258)
T ss_pred             CCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc---cc-ccCc---ccCcHHHHHH
Confidence            234456778888777788999999999999999999999875432111111111110   11 1111   1223567789


Q ss_pred             HHHcccCCCCCCCCH--HHHHH
Q 002875          843 ALLCTRSTPSDRPSM--EEALK  862 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~--~~v~~  862 (872)
                      +.+||+.||.+||++  +|+++
T Consensus       233 i~~~l~~~p~~R~~~~~~~l~~  254 (258)
T cd05578         233 INKLLERDPQKRLGDNLKDLKN  254 (258)
T ss_pred             HHHHccCChhHcCCccHHHHhc
Confidence            999999999999999  77653

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=296.62  Aligned_cols=240  Identities=18%  Similarity=0.197  Sum_probs=187.6

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      +...+|.|+||+||||+.. ++...|.|++.... ...+.+.-||++++..+||+||++++.|+.++..+|..|||+||-
T Consensus        36 IiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGA  115 (1187)
T KOG0579|consen   36 IIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGA  115 (1187)
T ss_pred             HHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCch
Confidence            7888999999999999864 55667888886543 346778889999999999999999999999999999999999999


Q ss_pred             hHHHhh---CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc--cCCCCccc
Q 002875          690 LSEKIR---TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL--ADGSFPAK  764 (872)
Q Consensus       690 L~~~l~---~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~--~~~~~~~~  764 (872)
                      .+..+-   +.+...+...+++|++.||.|||+.   .|||||+|+.|||++-+|.++++|||.+.....  .......|
T Consensus       116 VDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIG  192 (1187)
T KOG0579|consen  116 VDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIG  192 (1187)
T ss_pred             HhHHHHHhccccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccchhHHhhhccccC
Confidence            988764   3567788889999999999999999   999999999999999999999999998632211  11112336


Q ss_pred             ccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc--ccCCCCchHHHHH
Q 002875          765 IAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN--EVGSSSSLQDEIK  837 (872)
Q Consensus       765 ~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  837 (872)
                      ++|+++||+..     ..+|.+++||||||+.+.||+-+.+|..+-..+.      .+-.+....  ....+   .....
T Consensus       193 TPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMR------VllKiaKSePPTLlqP---S~Ws~  263 (1187)
T KOG0579|consen  193 TPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMR------VLLKIAKSEPPTLLQP---SHWSR  263 (1187)
T ss_pred             CcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHH------HHHHHhhcCCCcccCc---chhhh
Confidence            77777887654     4578999999999999999999888765332211      111111111  11112   22345


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.+++.+|+..||..||++++++++
T Consensus       264 ~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  264 SFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             HHHHHHHHHHhcCCccCCCHHHHhhC
Confidence            67788899999999999999999876

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=2.3e-32  Score=290.53  Aligned_cols=242  Identities=18%  Similarity=0.193  Sum_probs=178.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHH-hhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITR-IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~-l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||+++...  .....+..|+.. ++..+|||||++++++..++..|+||||++ 
T Consensus         5 ~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-   83 (283)
T cd06617           5 VIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD-   83 (283)
T ss_pred             EEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc-
Confidence            778899999999999986 479999999987542  223334445554 666789999999999999999999999997 


Q ss_pred             CChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-C
Q 002875          688 GNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-S  760 (872)
Q Consensus       688 g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~  760 (872)
                      |+|.+++..      ..++.....++.|++.|++|||+++  +++||||||+||+++.++.+||+|||++........ .
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~  161 (283)
T cd06617          84 TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKT  161 (283)
T ss_pred             ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecccccccccccccc
Confidence            688877753      3477888899999999999999753  799999999999999999999999999865432211 1


Q ss_pred             CcccccccCchhhhcc----cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 FPAKIAWTESGEFYNA----MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~----~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      ...+...|.+||....    ..++.++||||+||++|||+||+.||........     .............+  .....
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~  234 (283)
T cd06617         162 IDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQ-----QLKQVVEEPSPQLP--AEKFS  234 (283)
T ss_pred             cccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHH-----HHHHHHhcCCCCCC--ccccC
Confidence            1123344667776643    3457889999999999999999999864321110     01111111100000  01123


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .++.+++.+||+.+|++||+++|++++
T Consensus       235 ~~l~~li~~~l~~~p~~Rp~~~~il~~  261 (283)
T cd06617         235 PEFQDFVNKCLKKNYKERPNYPELLQH  261 (283)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            567889999999999999999999863

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=1.5e-32  Score=287.52  Aligned_cols=240  Identities=16%  Similarity=0.185  Sum_probs=187.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||.||+|.. .+|..||+|.+...   ....+.+.+|++++++++||||+++++.+.+.+..++||||+++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (257)
T cd08225           4 IIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDG   83 (257)
T ss_pred             EEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCC
Confidence            678899999999999986 46889999998653   23455678899999999999999999999999999999999999


Q ss_pred             CChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccccccCCC--
Q 002875          688 GNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       688 g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~~~~~--  760 (872)
                      ++|.+++..    ..++.....++.|+++|++|||+.   +++|+||||+||++++++ .+|++|||.+.........  
T Consensus        84 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~  160 (257)
T cd08225          84 GDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAY  160 (257)
T ss_pred             CcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhccCCccccc
Confidence            999999865    247888999999999999999998   999999999999999875 4699999988654332211  


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+...|.+||+.....++.++|||||||++|||+||+.|+.......      ...+..........   .....++.
T Consensus       161 ~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~  231 (257)
T cd08225         161 TCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQ------LVLKICQGYFAPIS---PNFSRDLR  231 (257)
T ss_pred             ccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHH------HHHHHhcccCCCCC---CCCCHHHH
Confidence            1123444677888777778889999999999999999999986432111      01111111100001   11224677


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||..+|++|||++|++++
T Consensus       232 ~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         232 SLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             HHHHHHhccChhhCcCHHHHhhC
Confidence            88999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=4.1e-32  Score=287.43  Aligned_cols=238  Identities=16%  Similarity=0.129  Sum_probs=182.4

Q ss_pred             ccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          616 AARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       616 ~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      +|+|+||.||++.. .+|+.||+|.+....    ...+.+.+|++++++++||||+++++++...+..|+||||+++|+|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999975 579999999986432    2244567899999999999999999999999999999999999999


Q ss_pred             HHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCcccc
Q 002875          691 SEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPAKI  765 (872)
Q Consensus       691 ~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~~~~  765 (872)
                      .+++..    ..++.+...++.|++.|+.|||+.   +++||||||+||+++.++.+|++|||++........ ....+.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  157 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGT  157 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCC
Confidence            999865    346788889999999999999998   999999999999999999999999999865432111 111233


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..+.+||...+..++.++||||+||++|||++|+.||..........   .+...........+   ......+.+++.+
T Consensus       158 ~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~li~~  231 (277)
T cd05577         158 PGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKE---ELKRRTLEMAVEYP---DKFSPEAKDLCEA  231 (277)
T ss_pred             CCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHH---HHHhccccccccCC---ccCCHHHHHHHHH
Confidence            44678888777778889999999999999999999986443211100   00010001101111   1123467789999


Q ss_pred             cccCCCCCCC-----CHHHHHH
Q 002875          846 CTRSTPSDRP-----SMEEALK  862 (872)
Q Consensus       846 cl~~dp~~Rp-----t~~~v~~  862 (872)
                      ||+.||++||     ++.++++
T Consensus       232 ~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         232 LLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             HccCChhHccCCCcccHHHHHh
Confidence            9999999999     6666764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-33  Score=264.71  Aligned_cols=243  Identities=16%  Similarity=0.182  Sum_probs=181.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ....+|.|+.|.|+|++. .+|..+|||.+....  .+.+.+...+.++.+- ..|.||+.+|||..+..+++.||.|..
T Consensus        96 ~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~  175 (391)
T KOG0983|consen   96 NLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMST  175 (391)
T ss_pred             hHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHH
Confidence            678899999999999985 679999999997532  2344455556665544 379999999999999999999999864


Q ss_pred             CChHHHhhC-CCCHHHH--HHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc-CCCCcc
Q 002875          688 GNLSEKIRT-KRDWAAK--YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA-DGSFPA  763 (872)
Q Consensus       688 g~L~~~l~~-~~~~~~~--~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~-~~~~~~  763 (872)
                       ..+..+++ ..+.+++  -++.+.+..||.||-..|  +|+|||+||+|||+|+.|.+|++|||++...-+. ..+..+
T Consensus       176 -C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsA  252 (391)
T KOG0983|consen  176 -CAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSA  252 (391)
T ss_pred             -HHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeeccccccccc
Confidence             56555544 3344444  378889999999999875  9999999999999999999999999998654332 233344


Q ss_pred             cccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          764 KIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       764 ~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      +.+.|++||.+.   ..+|...+|||||||.++|++||+.|+..-...     .+.+..+.+..++. -+........+.
T Consensus       253 GC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~td-----Fe~ltkvln~ePP~-L~~~~gFSp~F~  326 (391)
T KOG0983|consen  253 GCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTD-----FEVLTKVLNEEPPL-LPGHMGFSPDFQ  326 (391)
T ss_pred             CCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCcc-----HHHHHHHHhcCCCC-CCcccCcCHHHH
Confidence            555567777654   457888899999999999999999998753321     11222333332221 111122556788


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++..|+.+|+.+||.-.+++++
T Consensus       327 ~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  327 SFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             HHHHHHhhcCcccCcchHHHhcC
Confidence            99999999999999999988765

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=3.4e-32  Score=286.28  Aligned_cols=244  Identities=20%  Similarity=0.256  Sum_probs=188.2

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEec--CCeeEEEEcc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDY  684 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lv~ey  684 (872)
                      ...+.+|.|+||.||++.. .+|+.||+|.+...   ....+.+.+|++++++++||||+++++++..  ....++||||
T Consensus         3 ~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~   82 (265)
T cd08217           3 EVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEY   82 (265)
T ss_pred             eeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehh
Confidence            3678899999999999985 57889999998643   2335567889999999999999999998864  4568999999


Q ss_pred             cCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCC--CCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          685 LPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDC--YPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       685 ~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~--~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      +++|+|.+++..      ..++.+.+.++.|+++|++|||..+  ..+++||||||+||+++.++.+|++|||++.....
T Consensus        83 ~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~  162 (265)
T cd08217          83 CEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGH  162 (265)
T ss_pred             ccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccC
Confidence            999999999854      3578888999999999999999332  23999999999999999999999999999876543


Q ss_pred             cCC--CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          757 ADG--SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       757 ~~~--~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      ...  ....+...+.+||......++.++|||||||++|||+||+.|+.......   .   ........ .  ......
T Consensus       163 ~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~---~---~~~~~~~~-~--~~~~~~  233 (265)
T cd08217         163 DSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQ---L---ASKIKEGK-F--RRIPYR  233 (265)
T ss_pred             CcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHH---H---HHHHhcCC-C--CCCccc
Confidence            221  11224455778888877778889999999999999999999987543110   0   00111111 0  011112


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.+++.+|++.+|++||+++|++++
T Consensus       234 ~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         234 YSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             cCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence            33567899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.5e-32  Score=274.92  Aligned_cols=245  Identities=16%  Similarity=0.121  Sum_probs=191.2

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ....+|.|.-|.||.+.+ .++..+|+|++.+...    .....+.|-++|+.++||.++.||+.+++++..|+
T Consensus        77 ~~f~--llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl  154 (459)
T KOG0610|consen   77 RHFR--LLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCL  154 (459)
T ss_pred             HHHH--HHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEE
Confidence            3455  788999999999999997 4568999999986533    23456678889999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          681 LYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      |||||+||+|....+++    .+....+.++.+|+-||+|||-.   |||.|||||+|||+-++|++-++||.++.....
T Consensus       155 ~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~~~~  231 (459)
T KOG0610|consen  155 VMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLRCPV  231 (459)
T ss_pred             EEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeeccccccCCC
Confidence            99999999999988763    35566778999999999999999   999999999999999999999999997532110


Q ss_pred             ---------------------------------cCCC-------------------------CcccccccCchhhhcccC
Q 002875          757 ---------------------------------ADGS-------------------------FPAKIAWTESGEFYNAMK  778 (872)
Q Consensus       757 ---------------------------------~~~~-------------------------~~~~~~~~~~~e~~~~~~  778 (872)
                                                       ....                         .-.++..|.+||++.+..
T Consensus       232 ~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~G  311 (459)
T KOG0610|consen  232 SPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEG  311 (459)
T ss_pred             CCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCC
Confidence                                             0000                         001344566788888888


Q ss_pred             CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCC--
Q 002875          779 EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS--  856 (872)
Q Consensus       779 ~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt--  856 (872)
                      .+.++|.|+|||++|||+.|..||-+....+.      +..++.....  .+.....+..+.+++.+.|.+||.+|-.  
T Consensus       312 HgsAVDWWtfGIflYEmLyG~TPFKG~~~~~T------l~NIv~~~l~--Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~  383 (459)
T KOG0610|consen  312 HGSAVDWWTFGIFLYEMLYGTTPFKGSNNKET------LRNIVGQPLK--FPEEPEVSSAAKDLIRKLLVKDPSKRLGSK  383 (459)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCcCCCCchhh------HHHHhcCCCc--CCCCCcchhHHHHHHHHHhccChhhhhccc
Confidence            88999999999999999999999987654331      2222222111  1222245567889999999999999987  


Q ss_pred             --HHHHHHH
Q 002875          857 --MEEALKL  863 (872)
Q Consensus       857 --~~~v~~~  863 (872)
                        ++||-+|
T Consensus       384 rGA~eIK~H  392 (459)
T KOG0610|consen  384 RGAAEIKRH  392 (459)
T ss_pred             cchHHhhcC
Confidence              7777543

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=3.7e-32  Score=289.72  Aligned_cols=244  Identities=18%  Similarity=0.189  Sum_probs=182.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||.||++.. .+|+.||||.+....  .....+.+|+.++.++. |||||++++++..++..++||||++.
T Consensus         8 ~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~   87 (288)
T cd06616           8 DLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDI   87 (288)
T ss_pred             HHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccC
Confidence            678899999999999985 568999999987532  34556788999999986 99999999999999999999999874


Q ss_pred             CChHHHh---h----CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          688 GNLSEKI---R----TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       688 g~L~~~l---~----~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                       ++.++.   .    ...++.....++.|+++|++|||+.+  +|+||||||+||+++.++.+||+|||+++....... 
T Consensus        88 -~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~  164 (288)
T cd06616          88 -SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAK  164 (288)
T ss_pred             -CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcC--CeeccCCCHHHEEEccCCcEEEeecchhHHhccCCcc
Confidence             654432   1    24577888899999999999999742  899999999999999999999999999865432211 


Q ss_pred             CCcccccccCchhhhccc---CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccc-cCCCCchHHH
Q 002875          760 SFPAKIAWTESGEFYNAM---KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENE-VGSSSSLQDE  835 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~---~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  835 (872)
                      ....+...|.+||.+...   .++.++||||+||++|||+||+.||.......     ....+...... ..........
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  239 (288)
T cd06616         165 TRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVF-----DQLTQVVKGDPPILSNSEEREF  239 (288)
T ss_pred             ccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHH-----HHHhhhcCCCCCcCCCcCCCcc
Confidence            111233346677776554   67889999999999999999999986443110     01111111110 0001111223


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..++.+++.+||+.||++|||++|++++
T Consensus       240 ~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         240 SPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            4567899999999999999999999865

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=4.6e-32  Score=285.79  Aligned_cols=244  Identities=21%  Similarity=0.262  Sum_probs=187.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-------hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.+|+|++|.||+|.. .+|+.||+|.+....       ...+.+.+|++.+++++|||||++++++.+.+..++|||
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e   83 (268)
T cd06630           4 KGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVE   83 (268)
T ss_pred             ccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEe
Confidence            678899999999999985 778999999986432       124577889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccccccCCC
Q 002875          684 YLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       684 y~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~~~~~  760 (872)
                      |+++|+|.+++..  ..++.....++.|++.|++|||+.   +++||||||+||+++.++ .+|++|||.+.........
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~  160 (268)
T cd06630          84 WMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTG  160 (268)
T ss_pred             ccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccccccccccccccc
Confidence            9999999999865  346788889999999999999999   999999999999998775 5999999998654322110


Q ss_pred             ------CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          761 ------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       761 ------~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                            ...+...+.+||......++.++||||+||++|||++|..||.........   ....+.....  ........
T Consensus       161 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~  235 (268)
T cd06630         161 AGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHL---ALIFKIASAT--TAPSIPEH  235 (268)
T ss_pred             CCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchH---HHHHHHhccC--CCCCCchh
Confidence                  111233467778877777888999999999999999999988643211100   0000100000  00111123


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...++.+++.+|++.+|++|||+.|++++
T Consensus       236 ~~~~~~~~i~~~l~~~p~~R~~~~~ll~~  264 (268)
T cd06630         236 LSPGLRDVTLRCLELQPEDRPPSRELLKH  264 (268)
T ss_pred             hCHHHHHHHHHHcCCCcccCcCHHHHhcC
Confidence            34567889999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=3.1e-32  Score=290.37  Aligned_cols=238  Identities=16%  Similarity=0.139  Sum_probs=188.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||++.. .+++.||||.+....    ...+.+.+|++++++++||||+++++++.+.+..|+||||++
T Consensus         5 ~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (290)
T cd05580           5 FIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVP   84 (290)
T ss_pred             EEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCC
Confidence            678999999999999986 468999999986532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++..  ..+...+..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++...... ....+
T Consensus        85 ~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~-~~~~~  160 (290)
T cd05580          85 GGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRT-YTLCG  160 (290)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccCCCC-CCCCC
Confidence            9999999865  357788889999999999999998   99999999999999999999999999987654332 12223


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ...|.+||.......+.++||||||+++|||+||..||.......      ......... ...+..   ....+.+++.
T Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~-~~~~~~---~~~~l~~li~  230 (290)
T cd05580         161 TPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQ------IYEKILEGK-VRFPSF---FSPDAKDLIR  230 (290)
T ss_pred             CccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHhcCC-ccCCcc---CCHHHHHHHH
Confidence            445677887776677888999999999999999999986543110      011111111 111111   1345678899


Q ss_pred             HcccCCCCCCC-----CHHHHHHH
Q 002875          845 LCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +||..||.+||     +++|++++
T Consensus       231 ~~l~~~p~~R~~~~~~~~~~l~~~  254 (290)
T cd05580         231 NLLQVDLTKRLGNLKNGVNDIKNH  254 (290)
T ss_pred             HHccCCHHHccCcccCCHHHHHcC
Confidence            99999999999     77787654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.98  E-value=7.4e-32  Score=287.17  Aligned_cols=249  Identities=21%  Similarity=0.229  Sum_probs=187.3

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...+.+|+|++|.||+|.. .+|+.||||++....   ...+.+.+|+.++++++||||+++++++..++..++||||+ 
T Consensus         3 ~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-   81 (286)
T cd07832           3 KILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-   81 (286)
T ss_pred             eEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-
Confidence            3678899999999999986 578999999997543   23467888999999999999999999999999999999999 


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CC
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GS  760 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~  760 (872)
                      +++|.+++..   ..++.+...++.|+++||+|||+.   +|+|+||||+||+++.++.++++|||++.......   ..
T Consensus        82 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~  158 (286)
T cd07832          82 PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYS  158 (286)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccc
Confidence            9999999864   357888999999999999999998   99999999999999999999999999987554322   11


Q ss_pred             CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccccc---ccccc
Q 002875          761 FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGL---LGEMY  821 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~---~~~~~  821 (872)
                      ...+..+|.+||.... ..++.++||||+||++|||+||..++........               ++....   .....
T Consensus       159 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (286)
T cd07832         159 HQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKIT  238 (286)
T ss_pred             cccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhccc
Confidence            2224455777787643 3467889999999999999999666643221100               000000   00000


Q ss_pred             cccccC--CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 NENEVG--SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 ~~~~~~--~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+....  .....++....+.+++.+|++.||++|||+++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         239 FPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             CCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            000000  000001223678899999999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.98  E-value=8.9e-33  Score=266.71  Aligned_cols=250  Identities=16%  Similarity=0.210  Sum_probs=193.4

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhc-cCCCCceeEEEEEec----CCe
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGT-VRHKNLIRLLGFCYN----RHQ  677 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~----~~~  677 (872)
                      +++.|.-. .+++|-|-.|+|..+.. .+|+.+|+|++...    ...++|++.--+ -.|||||.++++|+.    ...
T Consensus        59 itedY~is-~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkc  133 (400)
T KOG0604|consen   59 ITEDYSIS-WQVLGAGINGKVVQCVHKRTQEKFALKVLLDS----PKARREVELHWMASGHPHIVSIIDVYENSYQGRKC  133 (400)
T ss_pred             chhhheeh-hhhhccccCCceEEEEeccchhhhHHHHHhcC----HHHHhHhhhhhhhcCCCceEEeehhhhhhccCcee
Confidence            44555422 37899999999998874 68999999998643    335566766433 359999999999864    457


Q ss_pred             eEEEEcccCCCChHHHhhCCCC----HHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRTKRD----WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLAEFGF  750 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~~~~----~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~dfg~  750 (872)
                      ..+|||.|+||+|+..++.+.+    ..+.-.|+.||+.|++|||+.   .|.|||+||+|+|...   +-..|++|||+
T Consensus       134 LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLtDfGF  210 (400)
T KOG0604|consen  134 LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLTDFGF  210 (400)
T ss_pred             eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEeccccc
Confidence            7899999999999999987654    345568999999999999999   9999999999999964   45699999999


Q ss_pred             cccccccC-CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCC
Q 002875          751 KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       751 ~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      |+...... -..++-++||.+||+....+|+...|+||+||++|-|+.|-+||+........+  ++-..+.....-...
T Consensus       211 AK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aisp--gMk~rI~~gqy~FP~  288 (400)
T KOG0604|consen  211 AKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP--GMKRRIRTGQYEFPE  288 (400)
T ss_pred             ccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCCh--hHHhHhhccCccCCC
Confidence            98755322 234556788999999998899999999999999999999999998544321111  111122222222235


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++...+++..+++...|..+|++|-|++|++++
T Consensus       289 pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~h  322 (400)
T KOG0604|consen  289 PEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDH  322 (400)
T ss_pred             hhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcC
Confidence            5677778888899999999999999999999865

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.98  E-value=4.3e-32  Score=289.86  Aligned_cols=252  Identities=18%  Similarity=0.188  Sum_probs=185.9

Q ss_pred             hhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccchh---HHHHHHHHHHhhccCCCCceeEEEEEecC--CeeE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAY  679 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~  679 (872)
                      +.|.  ..+.+|.|+||.||+|... +|+.||||.++.....   ...+.+|+.++++++||||+++++++...  +..|
T Consensus         5 ~~y~--~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           5 DEYE--KLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhh--hhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            3455  7899999999999999974 6889999999754322   33567899999999999999999999877  8899


Q ss_pred             EEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      +||||++ ++|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.....
T Consensus        83 lv~e~~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  158 (293)
T cd07843          83 MVMEYVE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYGS  158 (293)
T ss_pred             EEehhcC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeeccC
Confidence            9999997 599988864   257888999999999999999998   999999999999999999999999999875543


Q ss_pred             cCCC--CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccccccc
Q 002875          757 ADGS--FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGLLG  818 (872)
Q Consensus       757 ~~~~--~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~~~  818 (872)
                      ....  ...+...|.+||...+ ...+.++||||+||++|||+||..||........               |.....+.
T Consensus       159 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (293)
T cd07843         159 PLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELP  238 (293)
T ss_pred             CccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccc
Confidence            2111  1123344677776654 3467889999999999999999988864322110               00000000


Q ss_pred             ccc-----cccccCCCCchHH--HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 EMY-----NENEVGSSSSLQD--EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ~~~-----~~~~~~~~~~~~~--~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...     ...........+.  ....+.+++.+||+.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~  290 (293)
T cd07843         239 GAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKH  290 (293)
T ss_pred             hhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhcC
Confidence            000     0000000000111  24557789999999999999999999864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.98  E-value=6e-32  Score=285.99  Aligned_cols=239  Identities=13%  Similarity=0.066  Sum_probs=179.5

Q ss_pred             hccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHH---HHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          615 EAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFI---TRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~---~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      .+|+|+||.||+|.. .+|+.||+|.+.....    ....+.+|.   +.++...||||+++++++.+++..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            479999999999986 5689999999865321    122233333   33445679999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++...  .++.++..++.|+++|++|||+.   +|+||||||+||+++.++.+|++|||++............+
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~  157 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVG  157 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCC
Confidence            99999988653  57899999999999999999998   99999999999999999999999999986543322222234


Q ss_pred             ccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|++||... +..++.++||||+||++|||+||+.||.+..........    ..........+.   ....++.+++
T Consensus       158 ~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~----~~~~~~~~~~~~---~~s~~~~~li  230 (278)
T cd05606         158 THGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID----RMTLTMAVELPD---SFSPELRSLL  230 (278)
T ss_pred             CcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHH----HHhhccCCCCCC---cCCHHHHHHH
Confidence            45577778775 345788899999999999999999998754321110000    000000000011   1235678889


Q ss_pred             HHcccCCCCCCC-----CHHHHHHH
Q 002875          844 LLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      .+|+..+|++||     +++|++++
T Consensus       231 ~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         231 EGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             HHHhhcCHHhccCCCCCCHHHHHhC
Confidence            999999999999     99999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=3.3e-35  Score=323.21  Aligned_cols=473  Identities=26%  Similarity=0.325  Sum_probs=293.5

Q ss_pred             CCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCcccc
Q 002875            8 LPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEIS   87 (872)
Q Consensus         8 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~   87 (872)
                      ||....+  ...++.|++.+|.+...+-+.+.+-.+|+.||+++|++. ..|..+..+.+|+.|+++.|.|. .+|.+.+
T Consensus        13 ip~~i~~--~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~   88 (1081)
T KOG0618|consen   13 IPEQILN--NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS   88 (1081)
T ss_pred             cchhhcc--HHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh
Confidence            4444433  345667777777665433333344445777777777665 46666777777777777777665 5666677


Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEE
Q 002875           88 QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYL  167 (872)
Q Consensus        88 ~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  167 (872)
                      ++.+|++|+|.+|.+. .+|.++..+++|+.|++++|.+. .+|.-+..++.+..+..++|.....+    +.+. ++.+
T Consensus        89 ~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~l----g~~~-ik~~  161 (1081)
T KOG0618|consen   89 NMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRL----GQTS-IKKL  161 (1081)
T ss_pred             hhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhh----cccc-chhh
Confidence            7777777777766665 56777777777777777777663 55666666666666666666211111    1111 5666


Q ss_pred             EeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC
Q 002875          168 DIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       168 ~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      ++..|.+.+.++.++..++.  .|+|++|.+. .  .+...+..|+.|....|++....    -.-++|+.|+.++|.+.
T Consensus       162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~  232 (1081)
T KOG0618|consen  162 DLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT  232 (1081)
T ss_pred             hhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce
Confidence            66666666666666666555  5666666665 1  23555666666666666665321    12345666666666665


Q ss_pred             CCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCC
Q 002875          248 GTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLS  327 (872)
Q Consensus       248 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~  327 (872)
                      ...+..  .-.+|+++++++|++++ +|+++..+.+|+.++..+|.+. .+|.                        .+.
T Consensus       233 ~~~~~p--~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~------------------------ri~  284 (1081)
T KOG0618|consen  233 TLDVHP--VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPL------------------------RIS  284 (1081)
T ss_pred             eecccc--ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHH------------------------HHh
Confidence            332211  11356666666666663 4466666666666666666653 3333                        334


Q ss_pred             CCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcc-cccccccCCCCCCCcCCcccCCCcccc
Q 002875          328 NCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASK-LEYFNVSNNPKLGGMIPAQTWSLPSLQ  406 (872)
Q Consensus       328 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~ls~n~~l~~~~~~~~~~l~~L~  406 (872)
                      ..++|+.|.+..|.+. -+|....+++.|+.|||..|++....+..+.-+.. |..|+.+-|+. .......-...+.|+
T Consensus       285 ~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq  362 (1081)
T KOG0618|consen  285 RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQ  362 (1081)
T ss_pred             hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHH
Confidence            4556666666666665 34445556667777777777766433333333222 56666666632 222222234567788


Q ss_pred             cccccccccCC-CCCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCc
Q 002875          407 NFSASACNITG-NLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNS  485 (872)
Q Consensus       407 ~L~l~~~~l~~-~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  485 (872)
                      .|++.+|.++. ++|.+...+.|++|++++|++.......+.++..|++|+||+|+++ .+|+....++.|++|...+|+
T Consensus       363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCc
Confidence            88888888876 4577888888999999999887444456788888999999999888 456777788888888888888


Q ss_pred             cccccCccccCCCCCcEEECcCCeeeec-CCCCccccccCCccccCCCC
Q 002875          486 LSGQIPAKFGSCSSLTVLNVSFNDISGS-IPSGKVLRLMGSSAYAGNPK  533 (872)
Q Consensus       486 l~~~~~~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~np~  533 (872)
                      +.. .| .+..+++|+.+|+|.|+++.. +|.......+.-..+.||++
T Consensus       442 l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  442 LLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             eee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            874 44 677788888888888887643 23222224455556777764

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.98  E-value=1e-31  Score=289.97  Aligned_cols=242  Identities=21%  Similarity=0.258  Sum_probs=185.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|+. .+|+.||+|.+....    ...+.+.+|++.+++++|||+|+++++|.+++..++||||++
T Consensus        29 ~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  108 (317)
T cd06635          29 DLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCL  108 (317)
T ss_pred             hhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCC
Confidence            788899999999999985 578899999986432    224467889999999999999999999999999999999997


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA  763 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~  763 (872)
                       |++.+.+..   ..++.++..++.|++.|+.|||+.   +|+||||||+||+++.++.+||+|||++......  ....
T Consensus       109 -g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~--~~~~  182 (317)
T cd06635         109 -GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPA--NSFV  182 (317)
T ss_pred             -CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCccccCCc--cccc
Confidence             588777643   357888999999999999999998   9999999999999999999999999987653321  1122


Q ss_pred             cccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          764 KIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       764 ~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      +...|.+||+..   ...++.++|||||||++|||+||+.||........      ...........  .........+.
T Consensus       183 ~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~l~  254 (317)
T cd06635         183 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQNESPT--LQSNEWSDYFR  254 (317)
T ss_pred             CCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHH------HHHHHhccCCC--CCCccccHHHH
Confidence            334567777653   34578889999999999999999998864321110      00111100000  00112234577


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +++.+||+.+|.+||++.|++++...+
T Consensus       255 ~li~~~l~~~p~~Rpt~~~il~~~~~~  281 (317)
T cd06635         255 NFVDSCLQKIPQDRPTSEELLKHMFVL  281 (317)
T ss_pred             HHHHHHccCCcccCcCHHHHHhChhhh
Confidence            899999999999999999999876433

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.98  E-value=4.6e-32  Score=289.34  Aligned_cols=248  Identities=19%  Similarity=0.231  Sum_probs=181.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|.. .+|+.||||.+.....  ....+.+|+..+++++|+||+++++++.+++..|+||||++ +
T Consensus         9 ~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~   87 (291)
T cd07870           9 NLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMH-T   87 (291)
T ss_pred             EEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEeccc-C
Confidence            778899999999999985 5789999999865322  23456789999999999999999999999999999999996 6


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      ++.+++..   ...+.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  164 (291)
T cd07870          88 DLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEV  164 (291)
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCcc
Confidence            77777643   246777888999999999999999   999999999999999999999999999865322111  1112


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc----------cccc------ccccccccccc
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK----------PIDG------LLGEMYNENEV  826 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~----------~~~~------~~~~~~~~~~~  826 (872)
                      +...|.+||...+ ..++.++||||+||++|||+||+.||.........          +...      ...........
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T cd07870         165 VTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFL  244 (291)
T ss_pred             ccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhcc
Confidence            3345677787654 35677899999999999999999988643321000          0000      00000000000


Q ss_pred             C-CCCchH------HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 G-SSSSLQ------DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~-~~~~~~------~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      . ......      .....+.+++.+|++.||++|||++|++.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h  288 (291)
T cd07870         245 PCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLH  288 (291)
T ss_pred             ccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhcC
Confidence            0 000000      112456788999999999999999998764

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.98  E-value=7.5e-32  Score=283.07  Aligned_cols=237  Identities=16%  Similarity=0.150  Sum_probs=185.7

Q ss_pred             ccCCCCCceeeeecC-CCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          616 AARPQSAAGCKAVLP-TGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       616 ~g~g~~~~v~~~~~~-~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      +|.|++|.||+|+.. +|+.||+|.+....    ...+.+.+|+.++++++||||+++++++.+++..|+||||+++|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999974 58999999986532    2356788899999999999999999999999999999999999999


Q ss_pred             HHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCcccccc
Q 002875          691 SEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPAKIAW  767 (872)
Q Consensus       691 ~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~~~~~~  767 (872)
                      .+++.+.  .++.+...++.|++.|++|+|+.   +++|+||||+||+++.++.+|++|||+++....... ....+...
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~  157 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPE  157 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcC
Confidence            9999763  46778889999999999999998   999999999999999999999999999875543211 11123445


Q ss_pred             cCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccc-ccccCCCCchHHHHHHHHHHHHHc
Q 002875          768 TESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       768 ~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      +.+||......++.++|+||+||++|||+||..|+........    .....+.. ......+..   ....+.+++.+|
T Consensus       158 ~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~  230 (262)
T cd05572         158 YVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPM----EIYNDILKGNGKLEFPNY---IDKAAKDLIKQL  230 (262)
T ss_pred             ccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHH----HHHHHHhccCCCCCCCcc---cCHHHHHHHHHH
Confidence            6778887777788899999999999999999999875442110    01111110 010111111   135688999999


Q ss_pred             ccCCCCCCCC-----HHHHHH
Q 002875          847 TRSTPSDRPS-----MEEALK  862 (872)
Q Consensus       847 l~~dp~~Rpt-----~~~v~~  862 (872)
                      |+.||++||+     ++|+++
T Consensus       231 l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         231 LRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             ccCChhhCcCCcccCHHHHhc
Confidence            9999999999     777765

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.98  E-value=1.5e-32  Score=295.70  Aligned_cols=192  Identities=19%  Similarity=0.171  Sum_probs=162.3

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecC------CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lv~  682 (872)
                      ..+.+|+|+||.||+|+ -.+|+.||||.++..  ....+..-+|+++|++++|||||++++.-++.      ....+||
T Consensus        17 ~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvm   96 (732)
T KOG4250|consen   17 MDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVM   96 (732)
T ss_pred             ehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEE
Confidence            57889999999999999 689999999999753  23467788999999999999999999987654      3578999


Q ss_pred             cccCCCChHHHhhC-----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC--CCC--CeeEcccccccc
Q 002875          683 DYLPNGNLSEKIRT-----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD--ENM--EPHLAEFGFKYL  753 (872)
Q Consensus       683 ey~~~g~L~~~l~~-----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~--~~~--~~ki~dfg~~~~  753 (872)
                      |||++|||+..+..     .++..+.+.+..+++.||.|||.+   +|+||||||.||++-  .+|  --||+|||.|+.
T Consensus        97 EyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Are  173 (732)
T KOG4250|consen   97 EYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARE  173 (732)
T ss_pred             eecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeeccccccc
Confidence            99999999999976     457888899999999999999998   999999999999984  333  479999999997


Q ss_pred             ccccCCCC-cccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCC
Q 002875          754 TQLADGSF-PAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGS  806 (872)
Q Consensus       754 ~~~~~~~~-~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~  806 (872)
                      ........ ..|+..|.+|+.+. ..+++..+|.|||||++||.+||..||-...
T Consensus       174 l~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~  228 (732)
T KOG4250|consen  174 LDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFG  228 (732)
T ss_pred             CCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCC
Confidence            76544322 22556677778877 5788999999999999999999999987443

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.98  E-value=1.2e-31  Score=289.60  Aligned_cols=247  Identities=17%  Similarity=0.141  Sum_probs=180.4

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      .+..|.|+++.||+++. +|+.||||+++..   ....+.+.+|++.+++++||||+++++++.+.+..+++|||+++|+
T Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216           7 GKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             hHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            34445556666666655 8999999998754   3345678999999999999999999999999999999999999999


Q ss_pred             hHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC------
Q 002875          690 LSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG------  759 (872)
Q Consensus       690 L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~------  759 (872)
                      |.+++..    ..+......++.|+++||+|||+.   +|+||||||+||+++.++.+|++|||.+........      
T Consensus        86 l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~  162 (314)
T cd08216          86 CEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVH  162 (314)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeeccccccccccc
Confidence            9999875    246677788999999999999999   999999999999999999999999998754321111      


Q ss_pred             ---CCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc--cccc----------------
Q 002875          760 ---SFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP--IDGL----------------  816 (872)
Q Consensus       760 ---~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~--~~~~----------------  816 (872)
                         ....+...|.+||+...  ..++.++|||||||++|||++|+.||..........  ....                
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
T cd08216         163 DFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDS  242 (314)
T ss_pred             cccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCC
Confidence               01112334667787654  357788999999999999999999987432211000  0000                


Q ss_pred             ccc----cccccc--cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 LGE----MYNENE--VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 ~~~----~~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+    ......  ............++.+++.+||+.||++|||++|++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         243 MSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             cCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence            000    000000  00011112334567889999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.98  E-value=2.8e-32  Score=289.92  Aligned_cols=248  Identities=20%  Similarity=0.254  Sum_probs=184.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|.|++|.||+|.. .+|+.||||++.....   ..+.+.+|++.+++++|||++++++++.+++..|+||||++ 
T Consensus         3 ~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-   81 (283)
T cd07835           3 KVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD-   81 (283)
T ss_pred             hheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC-
Confidence            678899999999999986 5799999999875432   23567789999999999999999999999999999999995 


Q ss_pred             CChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CC
Q 002875          688 GNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SF  761 (872)
Q Consensus       688 g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~  761 (872)
                      ++|.+++..    ..++..+..++.|+++||+|||+.   +++||||+|+||+++.++.+|++|||+++.......  ..
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~  158 (283)
T cd07835          82 LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTH  158 (283)
T ss_pred             cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCc
Confidence            699998865    357888999999999999999998   999999999999999999999999999865432211  11


Q ss_pred             cccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------c------cccccccc---cc
Q 002875          762 PAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------P------IDGLLGEM---YN  822 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~------~~~~~~~~---~~  822 (872)
                      ..+...+.+||+... ..++.++|||||||++|||+||+.||.........         +      ......+.   ..
T Consensus       159 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (283)
T cd07835         159 EVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFP  238 (283)
T ss_pred             cccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcc
Confidence            122345677786644 34678899999999999999999888643221000         0      00000000   00


Q ss_pred             ccc-cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 ENE-VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~~~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ... .............+.+++.+|++.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         239 KWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             cccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            000 00000011122467899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.98  E-value=6.8e-32  Score=286.82  Aligned_cols=247  Identities=19%  Similarity=0.160  Sum_probs=181.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccC-CCCceeEEEEEecC--CeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNR--HQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~--~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|+. .+++.||||+++...  .......+|+..+.++. ||||+++++++.++  +..++||||+
T Consensus         3 ~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~   82 (282)
T cd07831           3 ILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELM   82 (282)
T ss_pred             eEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecC
Confidence            567899999999999985 578999999987532  22233456788888885 99999999999987  8899999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-C
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-F  761 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-~  761 (872)
                      + |++.+.+..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++. +.+||+|||+++........ .
T Consensus        83 ~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~  157 (282)
T cd07831          83 D-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTE  157 (282)
T ss_pred             C-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEecccccccccCCCcCC
Confidence            7 588888864   358889999999999999999999   9999999999999999 99999999998754322211 1


Q ss_pred             cccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc--------ccccccccccc------cc
Q 002875          762 PAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI--------DGLLGEMYNEN------EV  826 (872)
Q Consensus       762 ~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~--------~~~~~~~~~~~------~~  826 (872)
                      ..+..+|.+||... ...++.++||||+||++|||+||..||...........        .....+.....      ..
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (282)
T cd07831         158 YISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFP  237 (282)
T ss_pred             CCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCc
Confidence            12344567777653 34567889999999999999999888864332110000        00000000000      00


Q ss_pred             C-CC----CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 G-SS----SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~-~~----~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      . ..    .........+.+++.+||+.||++|||++|++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         238 SKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             ccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhC
Confidence            0 00    0011234678899999999999999999999864

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.98  E-value=2.6e-32  Score=310.58  Aligned_cols=254  Identities=15%  Similarity=0.140  Sum_probs=177.7

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeecC--CCcEEEEE------------------EeeccchhHHHHHHHHHHhhccCCC
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVLP--TGITVSVK------------------KIEWGATRIKIVSEFITRIGTVRHK  663 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~~--~g~~vavK------------------~~~~~~~~~~~~~~e~~~l~~l~H~  663 (872)
                      ....|.  ..+.||+|+||.||++...  ++..+++|                  ++.........+.+|+.++++++||
T Consensus       146 ~~~~Y~--ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hp  223 (501)
T PHA03210        146 FLAHFR--VIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHE  223 (501)
T ss_pred             hhhccE--EEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCC
Confidence            344565  8899999999999988642  22222222                  2222222345678999999999999


Q ss_pred             CceeEEEEEecCCeeEEEEcccCCCChHHHhhCC-C------CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCee
Q 002875          664 NLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTK-R------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV  736 (872)
Q Consensus       664 niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~------~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nil  736 (872)
                      |||++++++.+.+..|+|+||+. +++.+++... .      ...+...|+.|++.||+|||+.   +|+||||||+|||
T Consensus       224 nIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHrDLKP~NIL  299 (501)
T PHA03210        224 NILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHRDIKLENIF  299 (501)
T ss_pred             CcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEE
Confidence            99999999999999999999995 5787776432 1      2345567999999999999998   9999999999999


Q ss_pred             eCCCCCeeEccccccccccccCCC---CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC-Ccc
Q 002875          737 FDENMEPHLAEFGFKYLTQLADGS---FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ-NKP  812 (872)
Q Consensus       737 l~~~~~~ki~dfg~~~~~~~~~~~---~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~-~~~  812 (872)
                      ++.++.+||+|||+++........   ...++..|++||++.+..++.++|||||||++|||++|+.++....... ...
T Consensus       300 l~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~  379 (501)
T PHA03210        300 LNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQ  379 (501)
T ss_pred             ECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHH
Confidence            999999999999999765332211   1224556778898888888999999999999999999986655322110 000


Q ss_pred             ccccc-------ccc----------ccccccC-CCCchHH------HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          813 IDGLL-------GEM----------YNENEVG-SSSSLQD------EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       813 ~~~~~-------~~~----------~~~~~~~-~~~~~~~------~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+       .+.          +...... .......      ...++.+++.+|++.||++|||+.|++++
T Consensus       380 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~h  454 (501)
T PHA03210        380 LLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLAL  454 (501)
T ss_pred             HHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhC
Confidence            00000       000          0000000 0001111      11345677889999999999999999865

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=5.2e-32  Score=292.60  Aligned_cols=241  Identities=17%  Similarity=0.122  Sum_probs=188.2

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|++|.||+|... +|+.||+|.+....    ...+.+.+|++.+++++||||+++++++.+.+..|+||||++
T Consensus         5 ~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   84 (316)
T cd05574           5 KIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCP   84 (316)
T ss_pred             EeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecC
Confidence            6788999999999999864 59999999997542    234568889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          687 NGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       687 ~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      +|+|.+++..    ..++.....++.|+++||+|||..   +++||||||+||+++.++.++++|||++.........  
T Consensus        85 ~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  161 (316)
T cd05574          85 GGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVS  161 (316)
T ss_pred             CCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhcccccccccc
Confidence            9999999864    347788889999999999999998   9999999999999999999999999987643211100  


Q ss_pred             -----------------------------CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc
Q 002875          761 -----------------------------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK  811 (872)
Q Consensus       761 -----------------------------~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~  811 (872)
                                                   ...+...|.+||+..+..++.++|||||||++|||++|+.||........ 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~-  240 (316)
T cd05574         162 KALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDET-  240 (316)
T ss_pred             cccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHH-
Confidence                                         00123346778887777788899999999999999999999864432110 


Q ss_pred             cccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCC----HHHHHHH
Q 002875          812 PIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS----MEEALKL  863 (872)
Q Consensus       812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt----~~~v~~~  863 (872)
                           ...+.... .. .+........+.+++.+||+.||++|||    ++|++++
T Consensus       241 -----~~~~~~~~-~~-~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~  289 (316)
T cd05574         241 -----FSNILKKE-VT-FPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQH  289 (316)
T ss_pred             -----HHHHhcCC-cc-CCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcC
Confidence                 11111111 00 1111113456889999999999999999    7777764

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.98  E-value=5.2e-32  Score=288.00  Aligned_cols=249  Identities=19%  Similarity=0.265  Sum_probs=185.9

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ...+.+|.|++|.||+|+. .+|+.||||.++....  ..+.+.+|++++++++||||+++++++.+.+..++||||+++
T Consensus         3 ~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   82 (284)
T cd07836           3 KQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDK   82 (284)
T ss_pred             eEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCCc
Confidence            3788999999999999997 4689999999875432  345677899999999999999999999999999999999985


Q ss_pred             CChHHHhhC-----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          688 GNLSEKIRT-----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       688 g~L~~~l~~-----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                       +|.+++..     ..++.+...++.|++.||+|||+.   +++||||||+||++++++.+|++|||++.........  
T Consensus        83 -~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~  158 (284)
T cd07836          83 -DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFS  158 (284)
T ss_pred             -cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccc
Confidence             89888764     247888899999999999999998   9999999999999999999999999998644322111  


Q ss_pred             CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc---------cccccccc-----ccccc
Q 002875          761 FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP---------IDGLLGEM-----YNENE  825 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~---------~~~~~~~~-----~~~~~  825 (872)
                      ...+..+|.+||...+ ..++.++||||+||++|||+||+.||.+........         ....+...     +....
T Consensus       159 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (284)
T cd07836         159 NEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTF  238 (284)
T ss_pred             cccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccc
Confidence            1123345777887644 456788999999999999999998886543211000         00000000     00000


Q ss_pred             cCCCCc-----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          826 VGSSSS-----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       826 ~~~~~~-----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......     .+.....+.+++.+|++.||++||+++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~  281 (284)
T cd07836         239 PRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQH  281 (284)
T ss_pred             cCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            000000     01223567799999999999999999999853

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.98  E-value=5.4e-32  Score=291.86  Aligned_cols=259  Identities=20%  Similarity=0.287  Sum_probs=185.4

Q ss_pred             cchhhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEec
Q 002875          599 FTANDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYN  674 (872)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~  674 (872)
                      +...+..+.|.  ....+|+|+||.||+|.. .+|+.||||.+.....   ....+.+|++++++++||||++++++|..
T Consensus         5 ~~~~~~~~~y~--~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~   82 (310)
T cd07865           5 FPFCDEVSKYE--KLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRT   82 (310)
T ss_pred             CcccchhhheE--EEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEec
Confidence            33444555666  889999999999999986 5799999999864321   23345678999999999999999999876


Q ss_pred             CC--------eeEEEEcccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCe
Q 002875          675 RH--------QAYLLYDYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP  743 (872)
Q Consensus       675 ~~--------~~~lv~ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~  743 (872)
                      .+        ..++||||+++ ++.+++...   .++.+...++.|++.||+|||+.   +++||||||+||+++.++.+
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~  158 (310)
T cd07865          83 KATPYNRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGIL  158 (310)
T ss_pred             ccccccCCCceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcE
Confidence            54        45999999974 888887653   57888999999999999999999   99999999999999999999


Q ss_pred             eEccccccccccccCCC------CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccc
Q 002875          744 HLAEFGFKYLTQLADGS------FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGL  816 (872)
Q Consensus       744 ki~dfg~~~~~~~~~~~------~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~  816 (872)
                      ||+|||++.........      ...+...|.+||...+ ..++.++|||||||++|||+||..|+..............
T Consensus       159 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~  238 (310)
T cd07865         159 KLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQ  238 (310)
T ss_pred             EECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            99999998654322111      1112334667786644 3467889999999999999999888764332110000000


Q ss_pred             -cc-------------ccccccccCCC--CchH------HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 -LG-------------EMYNENEVGSS--SSLQ------DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 -~~-------------~~~~~~~~~~~--~~~~------~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ..             ...+....+..  ....      .....+.+++.+||..||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h  307 (310)
T cd07865         239 LCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNH  307 (310)
T ss_pred             HhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcC
Confidence             00             00000000000  0000      012356789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=2.4e-33  Score=263.77  Aligned_cols=250  Identities=19%  Similarity=0.297  Sum_probs=185.5

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC--------Cee
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--------HQA  678 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--------~~~  678 (872)
                      +...++|.|.||+||||.. .+|+.||+|++-..   ..-.....+|+.++..++|+|++.+++.|.+.        ..+
T Consensus        20 ek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~   99 (376)
T KOG0669|consen   20 EKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATF   99 (376)
T ss_pred             HHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccccee
Confidence            3788999999999999985 56788999876431   12244567889999999999999999988642        358


Q ss_pred             EEEEcccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      |+||++|+. ||...+.+.   .+..+..+++.++..||.|+|+.   .|+|||+||+|+||+.++..|++|||+++...
T Consensus       100 ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGlar~fs  175 (376)
T KOG0669|consen  100 YLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLARAFS  175 (376)
T ss_pred             eeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeecccccccee
Confidence            999999987 999998763   57788999999999999999999   99999999999999999999999999997654


Q ss_pred             ccCCCC------cccccccCchhhh-cccCCcccccchhHHHHHHHHHcCCCCCCCCCCC---------------CCccc
Q 002875          756 LADGSF------PAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL---------------QNKPI  813 (872)
Q Consensus       756 ~~~~~~------~~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~---------------~~~~~  813 (872)
                      ......      ..-+-||.+||.. ....++.+.|||..|||+.||.||.+.+.+....               ..|+.
T Consensus       176 ~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~  255 (376)
T KOG0669|consen  176 TSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPN  255 (376)
T ss_pred             cccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCC
Confidence            332211      1135688888865 4567899999999999999999988777643221               12222


Q ss_pred             ccccc--ccccccccCC--CCchHHHHH------HHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          814 DGLLG--EMYNENEVGS--SSSLQDEIK------LVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       814 ~~~~~--~~~~~~~~~~--~~~~~~~~~------~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ...+.  +.+...+.+.  ....++..+      +.++++.+++..||.+|+++++++++-
T Consensus       256 ~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~  316 (376)
T KOG0669|consen  256 VDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHD  316 (376)
T ss_pred             cccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchh
Confidence            11110  0000000100  001122222      677889999999999999999998653

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.98  E-value=1e-31  Score=280.41  Aligned_cols=242  Identities=17%  Similarity=0.258  Sum_probs=191.6

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|+|++|.||++... +|+.||+|++..... ..+.+.+|++.+++++||||+++++++...+..++|+||+++++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~   83 (253)
T cd05122           4 ILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGS   83 (253)
T ss_pred             eeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCc
Confidence            6688999999999999975 789999999976543 56778899999999999999999999999999999999999999


Q ss_pred             hHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-CCCcccc
Q 002875          690 LSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-GSFPAKI  765 (872)
Q Consensus       690 L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-~~~~~~~  765 (872)
                      |.+++...   .++.+...++.|+++|++|||..   +++||||+|+||++++++.++|+|||.+....... .....+.
T Consensus        84 L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  160 (253)
T cd05122          84 LKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGT  160 (253)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeeccccccccccccccceecC
Confidence            99998653   57888999999999999999998   99999999999999999999999999986554332 1122234


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..+.+||.......+.++||||||+++|||+||+.|+...........   ... ......   .........+.+++.+
T Consensus       161 ~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~---~~~-~~~~~~---~~~~~~~~~~~~~i~~  233 (253)
T cd05122         161 PYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFK---IAT-NGPPGL---RNPEKWSDEFKDFLKK  233 (253)
T ss_pred             CcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHH---HHh-cCCCCc---CcccccCHHHHHHHHH
Confidence            456788888777788899999999999999999998864422111000   000 000000   0011113467889999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.||++|||+.|++++
T Consensus       234 ~l~~~p~~R~t~~~~l~~  251 (253)
T cd05122         234 CLQKNPEKRPTAEQLLKH  251 (253)
T ss_pred             HccCChhhCCCHHHHhcC
Confidence            999999999999999864

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.98  E-value=2.5e-32  Score=291.12  Aligned_cols=248  Identities=19%  Similarity=0.229  Sum_probs=187.8

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|++|.||+|... +|+.||||.++...   ...+.+.+|++++++++|+||+++++++.+++..++||||+++
T Consensus         5 ~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~   84 (288)
T cd07833           5 VLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVER   84 (288)
T ss_pred             EEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCC
Confidence            7788999999999999864 68899999986532   2346788999999999999999999999999999999999998


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---CCc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---SFP  762 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~~~  762 (872)
                      +.+..+...  ..++.+...++.|++.|++|||..   +++|||+||+||++++++.+||+|||++........   ...
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~  161 (288)
T cd07833          85 TLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDY  161 (288)
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCc
Confidence            777766654  357788899999999999999998   999999999999999999999999999865443221   112


Q ss_pred             ccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc-c-----------------ccccccccccc
Q 002875          763 AKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK-P-----------------IDGLLGEMYNE  823 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~-~-----------------~~~~~~~~~~~  823 (872)
                      .+..++.+||+.... .++.++|||||||++|||+||+.||......... .                 ..........+
T Consensus       162 ~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (288)
T cd07833         162 VATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFP  241 (288)
T ss_pred             ccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccC
Confidence            234567788887666 7888999999999999999999887643211000 0                 00000000000


Q ss_pred             cccCCCCch-----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          824 NEVGSSSSL-----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       824 ~~~~~~~~~-----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      . .......     .....++.+++.+||..+|++|||+++++++
T Consensus       242 ~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  285 (288)
T cd07833         242 E-PSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQH  285 (288)
T ss_pred             C-CCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcC
Confidence            0 0000000     1124668899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.98  E-value=4.7e-32  Score=290.00  Aligned_cols=248  Identities=19%  Similarity=0.203  Sum_probs=181.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccC-CCCceeEEEEEecCCe-----eEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQ-----AYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~-----~~lv  681 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||.+.....   ....+.+|+.++++++ ||||+++++++...+.     .|+|
T Consensus         5 ~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv   84 (295)
T cd07837           5 KLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLV   84 (295)
T ss_pred             EeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEE
Confidence            778899999999999986 5789999999865322   2356778999999995 6999999999987655     8999


Q ss_pred             EcccCCCChHHHhhC-------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEcccccccc
Q 002875          682 YDYLPNGNLSEKIRT-------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYL  753 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~-------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~  753 (872)
                      |||+++ +|.+++..       ..++.+...++.||++||+|||+.   +|+||||||+||+++. ++.+||+|||+++.
T Consensus        85 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~  160 (295)
T cd07837          85 FEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIADLGLGRA  160 (295)
T ss_pred             eeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEeeccccee
Confidence            999985 89888753       247788899999999999999998   9999999999999998 88999999999865


Q ss_pred             ccccCCC--CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc---------ccccccccc
Q 002875          754 TQLADGS--FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP---------IDGLLGEMY  821 (872)
Q Consensus       754 ~~~~~~~--~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~---------~~~~~~~~~  821 (872)
                      .......  ...+..+|.+||+... ..++.++|||||||++|||+||..||..........         .........
T Consensus       161 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (295)
T cd07837         161 FSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVS  240 (295)
T ss_pred             cCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchh
Confidence            4322111  1123445677786643 456889999999999999999998886432211000         000000000


Q ss_pred             ccc----ccC-CCCc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 NEN----EVG-SSSS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 ~~~----~~~-~~~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...    ... ....    .+....++.+++.+||+.||++||+++|++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~  291 (295)
T cd07837         241 KLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTH  291 (295)
T ss_pred             hccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            000    000 0000    01234567889999999999999999999864

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.98  E-value=1.3e-31  Score=290.75  Aligned_cols=247  Identities=19%  Similarity=0.211  Sum_probs=180.9

Q ss_pred             hhccCC--CCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARP--QSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g--~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|  +||.||++.. .+|+.||||.+....   ...+.+.+|+.+++.++|||||+++++|..++..++||||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            566776  8899999986 589999999987532   2346788899999999999999999999999999999999999


Q ss_pred             CChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----
Q 002875          688 GNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----  759 (872)
Q Consensus       688 g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----  759 (872)
                      |++.+++..    ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||.+........    
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKV  160 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccc
Confidence            999999875    356777889999999999999998   999999999999999999999999985432111100    


Q ss_pred             -----CCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc----------cc-c------
Q 002875          760 -----SFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP----------ID-G------  815 (872)
Q Consensus       760 -----~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~----------~~-~------  815 (872)
                           ....+...|.+||+...  ..++.++|||||||++|||++|+.||..........          .. .      
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (328)
T cd08226         161 VYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEE  240 (328)
T ss_pred             cccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhh
Confidence                 00111223566777654  346788999999999999999999986432111000          00 0      


Q ss_pred             -------------ccccccccc-------ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          816 -------------LLGEMYNEN-------EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       816 -------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                   .........       .....+........+.+++.+||+.||++|||++|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~  308 (328)
T cd08226         241 SRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSH  308 (328)
T ss_pred             hhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                         000000000       000011112345678899999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=8.6e-32  Score=282.24  Aligned_cols=239  Identities=15%  Similarity=0.100  Sum_probs=176.7

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHH-hhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITR-IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~-l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.+|.|+||.||+|+. .+|+.||||.+.....    ....+..|..+ ....+||||+++++++.+.+..|+||||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            4689999999999986 5689999999865321    12223334333 4456899999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI  765 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~  765 (872)
                      |+|.++++.  ..++.....++.|++.||.|+|+.   +++||||||+||+++.++.+|++|||+++.....  ....+.
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~  156 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN--KKFVGT  156 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceecccc--ccCCCC
Confidence            999999975  357788889999999999999998   9999999999999999999999999998653321  111233


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||...+..++.++||||+||++|||+||..||........      ......................+.+++.+
T Consensus       157 ~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  230 (260)
T cd05611         157 PDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAV------FDNILSRRINWPEEVKEFCSPEAVDLINR  230 (260)
T ss_pred             cCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHhcccCCCCcccccCCHHHHHHHHH
Confidence            346677877666678899999999999999999999864332110      00000000000001111234567899999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.||++||++.++.+.
T Consensus       231 ~l~~~p~~R~~~~~~~~~  248 (260)
T cd05611         231 LLCMDPAKRLGANGYQEI  248 (260)
T ss_pred             HccCCHHHccCCCcHHHH
Confidence            999999999976544433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.97  E-value=2e-31  Score=279.45  Aligned_cols=242  Identities=20%  Similarity=0.252  Sum_probs=192.2

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~ey~  685 (872)
                      ..+.+|+|++|.||+|+.. +|+.||+|++....   ...+.+.+|+..+++++||||+++++++.+.  +..++||||+
T Consensus         4 ~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~   83 (260)
T cd06606           4 RGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYV   83 (260)
T ss_pred             eeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEec
Confidence            5678999999999999975 79999999987654   3467788999999999999999999999988  8999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----  759 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----  759 (872)
                      ++++|.+++..  ..++.++..++.|+++|++|||+.   +++|+|++|+||+++.++.+||+|||.+........    
T Consensus        84 ~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  160 (260)
T cd06606          84 SGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGT  160 (260)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEecccccccccc
Confidence            99999999876  457889999999999999999998   999999999999999999999999999876543321    


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ....+...|.+||.......+.++||||||+++|||++|+.|+..........     .........  ..........+
T Consensus       161 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~l  233 (260)
T cd06606         161 GSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAAL-----YKIGSSGEP--PEIPEHLSEEA  233 (260)
T ss_pred             cCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHH-----HhccccCCC--cCCCcccCHHH
Confidence            11223344667888777778899999999999999999999987544111000     000000000  11111224567


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+|++.||++||++.|++++
T Consensus       234 ~~~i~~~l~~~p~~Rp~~~~ll~~  257 (260)
T cd06606         234 KDFLRKCLRRDPKKRPTADELLQH  257 (260)
T ss_pred             HHHHHHhCcCChhhCCCHHHHhhC
Confidence            888999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.97  E-value=6.6e-32  Score=290.66  Aligned_cols=247  Identities=20%  Similarity=0.271  Sum_probs=183.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh---HHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|.. .+|+.||+|.++.....   ...+.+|+.++++++||||+++++++.+.  +..++||||+
T Consensus        11 ~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~   90 (309)
T cd07845          11 KLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYC   90 (309)
T ss_pred             EeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecC
Confidence            788999999999999996 56999999998753221   23456789999999999999999998764  5689999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-  761 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-  761 (872)
                      ++ +|.+++..   ..++.+...++.|+++|++|||+.   +++||||||+||++++++.+||+|||++.......... 
T Consensus        91 ~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~  166 (309)
T cd07845          91 EQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMT  166 (309)
T ss_pred             CC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeeecCCccCCCC
Confidence            74 88888764   357888999999999999999999   99999999999999999999999999987654321111 


Q ss_pred             -cccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc---------cccc---cc-----ccc
Q 002875          762 -PAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI---------DGLL---GE-----MYN  822 (872)
Q Consensus       762 -~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~---------~~~~---~~-----~~~  822 (872)
                       ......|.+||...+ ..++.++||||+||++|||++|+.||...........         ....   ..     .+.
T Consensus       167 ~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (309)
T cd07845         167 PKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFT  246 (309)
T ss_pred             cccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhccccccccc
Confidence             112345677787644 4578889999999999999999988864332110000         0000   00     000


Q ss_pred             ccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 ENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..... ....    ....+.+.+++.+|++.||++|||++|++++
T Consensus       247 ~~~~~-~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         247 LPKQP-YNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             ccCCC-CCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            00000 0000    1124567789999999999999999999865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=4.2e-32  Score=295.55  Aligned_cols=252  Identities=20%  Similarity=0.273  Sum_probs=185.2

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecC-----Ce
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----HQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~  677 (872)
                      +.|.  ..+.+|+|+||.||+|+. .+|+.||||+++..  ......+.+|+.++++++||||+++++++...     ..
T Consensus         5 ~~y~--i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           5 PRYQ--NLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             cceE--EEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            3455  788999999999999984 67999999998642  22345677899999999999999999987654     35


Q ss_pred             eEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      .|+||||+++ ++.+.+.. ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        83 ~~lv~e~~~~-~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~  158 (336)
T cd07849          83 VYIVQELMET-DLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLARIADP  158 (336)
T ss_pred             EEEEehhccc-CHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECcccceeeccc
Confidence            7999999975 88888865 458888899999999999999999   999999999999999999999999999865432


Q ss_pred             cCCC-----CcccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc---------ccccccc--
Q 002875          757 ADGS-----FPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP---------IDGLLGE--  819 (872)
Q Consensus       757 ~~~~-----~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~---------~~~~~~~--  819 (872)
                      ....     ...+..+|++||... ...++.++||||+||++|||+||+.||.+........         .......  
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (336)
T cd07849         159 EHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCII  238 (336)
T ss_pred             cccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhh
Confidence            2111     112344566777654 3467888999999999999999998886432110000         0000000  


Q ss_pred             ------cccccccCCCC----chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          820 ------MYNENEVGSSS----SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       820 ------~~~~~~~~~~~----~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                            .....+.....    ..+....++.+++.+||+.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         239 SLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             chhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                  00000000000    011224568899999999999999999999986

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.97  E-value=6.1e-32  Score=284.31  Aligned_cols=238  Identities=17%  Similarity=0.193  Sum_probs=183.5

Q ss_pred             ccCCCCCceeeeecC-CCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          616 AARPQSAAGCKAVLP-TGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       616 ~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      +|.|+||.||+++.. +|+.||+|.+.....    ..+.+.+|++++++++||||+++++.+.+.+..|+||||+++|+|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            588999999999975 599999999865432    355678899999999999999999999999999999999999999


Q ss_pred             HHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---------
Q 002875          691 SEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---------  759 (872)
Q Consensus       691 ~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---------  759 (872)
                      .+++.+  ..++..+..++.|+++||+|||+.   +++||||+|+||++++++.+|++|||++........         
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  157 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKE  157 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccccccccc
Confidence            999875  457888899999999999999998   999999999999999999999999999764322211         


Q ss_pred             -CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          760 -SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       ....+...+.+||.......+.++||||||+++||++||..||.......      ......... ...+. .......
T Consensus       158 ~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~------~~~~~~~~~-~~~~~-~~~~~~~  229 (265)
T cd05579         158 DKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEE------IFQNILNGK-IEWPE-DVEVSDE  229 (265)
T ss_pred             ccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHhcCC-cCCCc-cccCCHH
Confidence             11113344667787766667889999999999999999999986443111      011111100 00011 1112456


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      +.+++.+||+.+|++|||+.++.+.|
T Consensus       230 ~~~~i~~~l~~~p~~Rpt~~~~~~~l  255 (265)
T cd05579         230 AIDLISKLLVPDPEKRLGAKSIEEIK  255 (265)
T ss_pred             HHHHHHHHhcCCHhhcCCCccHHHHh
Confidence            78999999999999999995554444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-31  Score=271.09  Aligned_cols=252  Identities=19%  Similarity=0.231  Sum_probs=184.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhh--ccCCCCceeEEEEEecC----CeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIG--TVRHKNLIRLLGFCYNR----HQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~--~l~H~niv~l~~~~~~~----~~~~lv~ey~  685 (872)
                      ..+.+|+|.||+|++|.. -|+.||||++.  +.+.+.+.+|.++.+  .++|+||..+++.-..+    .+.+||+||.
T Consensus       215 L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~--srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYH  291 (513)
T KOG2052|consen  215 LQEIIGKGRFGEVWRGRW-RGEDVAVKIFS--SRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYH  291 (513)
T ss_pred             EEEEecCccccceeeccc-cCCceEEEEec--ccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecc
Confidence            567899999999999987 69999999997  334556666677765  47999999999987543    2789999999


Q ss_pred             CCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhh-----CCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-
Q 002875          686 PNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHH-----DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-  758 (872)
Q Consensus       686 ~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~-----~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-  758 (872)
                      +.|||+|+|.+ ..+...-++++..+|.||+|||.     +..|.|.|||||+.|||+.+++.+.|+|+|+|-...... 
T Consensus       292 e~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~  371 (513)
T KOG2052|consen  292 EHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTD  371 (513)
T ss_pred             cCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCC
Confidence            99999999986 45778889999999999999995     356899999999999999999999999999985433221 


Q ss_pred             -----CCCcccccccCchhhhccc-C----Cc-ccccchhHHHHHHHHHcC----------CCCCCCCCCCCCccccc--
Q 002875          759 -----GSFPAKIAWTESGEFYNAM-K----EE-MYMDVYGFGEIILEILTN----------GRLTNAGSSLQNKPIDG--  815 (872)
Q Consensus       759 -----~~~~~~~~~~~~~e~~~~~-~----~~-~~~Dv~S~Gvil~el~tg----------~~p~~~~~~~~~~~~~~--  815 (872)
                           .....++..|++||+.+.. .    .+ ..+||||||.|+||++-+          +.||++-.. .+-...+  
T Consensus       372 ~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp-~DPs~eeMr  450 (513)
T KOG2052|consen  372 TIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVP-SDPSFEEMR  450 (513)
T ss_pred             cccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCC-CCCCHHHHh
Confidence                 1223366778888877532 1    11 126999999999999863          224442211 1111111  


Q ss_pred             --cccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          816 --LLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       816 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                        ...+-+.+. ++......+.+..+.+++..||..+|+.|-|+=-+-+.|.++.
T Consensus       451 kVVCv~~~RP~-ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~  504 (513)
T KOG2052|consen  451 KVVCVQKLRPN-IPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLS  504 (513)
T ss_pred             cceeecccCCC-CCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHh
Confidence              111111221 1112223567778899999999999999999888877776654

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=1.3e-31  Score=280.22  Aligned_cols=241  Identities=17%  Similarity=0.193  Sum_probs=191.5

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...+.+|+|+||.||++.. .+|+.+|||.+...   ......+.+|++++++++||||+++++++.+....++||||++
T Consensus         3 ~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   82 (256)
T cd08530           3 KVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAP   82 (256)
T ss_pred             eEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcC
Confidence            3678899999999999974 57889999998753   2335567789999999999999999999999999999999999


Q ss_pred             CCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          687 NGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       687 ~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      +++|.+++..      ..++.....++.|++.|++|||+.   +++||||||+||++++++.+|++|||+++........
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~  159 (256)
T cd08530          83 FGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAK  159 (256)
T ss_pred             CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhhccCCcc
Confidence            9999999855      347788889999999999999998   9999999999999999999999999998765433222


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+...+.+||......++.++|+||+|+++|||++|+.|+.......   ...   ...... .  .+.......++.
T Consensus       160 ~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~---~~~---~~~~~~-~--~~~~~~~~~~~~  230 (256)
T cd08530         160 TQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQD---LRY---KVQRGK-Y--PPIPPIYSQDLQ  230 (256)
T ss_pred             cccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHH---HHhcCC-C--CCCchhhCHHHH
Confidence            2224455778888877778889999999999999999999886433110   000   000111 0  111123445688


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+|++.+|++||++.|++++
T Consensus       231 ~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         231 NFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             HHHHHHcCCCcccCCCHHHHhcC
Confidence            99999999999999999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=6.6e-32  Score=293.96  Aligned_cols=256  Identities=20%  Similarity=0.254  Sum_probs=187.2

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC-----C
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----H  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~  676 (872)
                      +.|.  ....+|+|+||.||+|.. .+|+.||||.+...   ......+.+|+.++++++||||+++++++...     .
T Consensus         5 ~~y~--~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (337)
T cd07858           5 TKYV--PIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFN   82 (337)
T ss_pred             ccee--EEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccC
Confidence            3454  778999999999999985 67899999998642   22344567899999999999999999988654     3


Q ss_pred             eeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ..|+||||+. ++|.+++...  .+......++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus        83 ~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  158 (337)
T cd07858          83 DVYIVYELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLARTT  158 (337)
T ss_pred             cEEEEEeCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCcccccc
Confidence            5799999996 6899988653  46788899999999999999998   9999999999999999999999999998754


Q ss_pred             cccCC--CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------c--ccc
Q 002875          755 QLADG--SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------K--PID  814 (872)
Q Consensus       755 ~~~~~--~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~--~~~  814 (872)
                      .....  ....+..+|.+||.... ..++.++|||||||++|||++|+.||........               +  ...
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T cd07858         159 SEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRN  238 (337)
T ss_pred             CCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCc
Confidence            33211  11123445677776543 4578899999999999999999998864321000               0  000


Q ss_pred             ccccccccccccCCC----CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH--Hccc
Q 002875          815 GLLGEMYNENEVGSS----SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGL  867 (872)
Q Consensus       815 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~  867 (872)
                      ...............    ...+....++.+++.+||+.||++|||++|++++  +..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~  297 (337)
T cd07858         239 EKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASL  297 (337)
T ss_pred             hhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhh
Confidence            000000000000000    0012234567899999999999999999999977  5544

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=5.8e-32  Score=294.18  Aligned_cols=253  Identities=19%  Similarity=0.258  Sum_probs=186.9

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec----CCe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN----RHQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~  677 (872)
                      +.|.  ..+.+|+|++|.||+|.. .+|+.||+|++....   ...+.+.+|+.++++++||||+++++++..    ...
T Consensus         5 ~~y~--~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   82 (334)
T cd07855           5 SRYK--PIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKD   82 (334)
T ss_pred             hcee--eeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCce
Confidence            3455  778899999999999985 579999999987532   234566789999999999999999998763    346


Q ss_pred             eEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      .|+||||+. |+|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus        83 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~  158 (334)
T cd07855          83 VYVVMDLME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMARGLS  158 (334)
T ss_pred             EEEEEehhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEecccccceeec
Confidence            899999996 699999864  357888899999999999999998   99999999999999999999999999986543


Q ss_pred             ccCCC------CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------cc------
Q 002875          756 LADGS------FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------PI------  813 (872)
Q Consensus       756 ~~~~~------~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~~------  813 (872)
                      .....      ...+..+|.+||.... ..++.++|||||||++|||++|+.||.+.......         +.      
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~  238 (334)
T cd07855         159 SSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNR  238 (334)
T ss_pred             ccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhh
Confidence            22111      1123455777887644 45788899999999999999999998654321100         00      


Q ss_pred             --cccccccccccccCCCCc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          814 --DGLLGEMYNENEVGSSSS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       814 --~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                        ........+.........    .+....++.+++.+||+.||++|||+++++.+-
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~  295 (334)
T cd07855         239 IGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHP  295 (334)
T ss_pred             hchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhCh
Confidence              000000000000000000    122346788999999999999999999998753

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=7.3e-32  Score=294.13  Aligned_cols=257  Identities=19%  Similarity=0.233  Sum_probs=189.3

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC------
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------  675 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------  675 (872)
                      ..|.  ....+|+|+||.||+|+. .+|+.||||++....   .....+.+|++++++++||||+++++++...      
T Consensus        15 ~~y~--~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~   92 (342)
T cd07879          15 ERYT--SLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEF   92 (342)
T ss_pred             cceE--EEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCC
Confidence            4454  788999999999999985 579999999986432   2234577899999999999999999998754      


Q ss_pred             CeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      ...++||||+.. ++.++.....++.....++.|+++||+|||+.   +|+||||||+||+++.++.+|++|||+++...
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~  168 (342)
T cd07879          93 QDFYLVMPYMQT-DLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDFGLARHAD  168 (342)
T ss_pred             ceEEEEeccccc-CHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCCCCcCCC
Confidence            246999999974 88887766778889999999999999999999   99999999999999999999999999987543


Q ss_pred             ccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-c----------------cc
Q 002875          756 LADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-G----------------LL  817 (872)
Q Consensus       756 ~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~----------------~~  817 (872)
                      .... ...+..+|.+||.... ..++.++|||||||++|||+||+.||.+.......... .                ..
T Consensus       169 ~~~~-~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (342)
T cd07879         169 AEMT-GYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAA  247 (342)
T ss_pred             CCCC-CceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccch
Confidence            2211 1223445677887654 45788899999999999999999998754311100000 0                00


Q ss_pred             cccccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH--HcccCC
Q 002875          818 GEMYNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGLKP  869 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~~~  869 (872)
                      .......+.......    +.....+.+++.+||+.||++||+++|++++  ++.+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         248 KSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             HHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence            000000000000000    1123457899999999999999999999965  665554

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.97  E-value=9.9e-32  Score=292.89  Aligned_cols=254  Identities=22%  Similarity=0.274  Sum_probs=186.5

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeecc---chhHHHHHHHHHHhhcc-CCCCceeEEEEEecC--C
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWG---ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR--H  676 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~--~  676 (872)
                      +.+.|.  ..+.+|+|+||.||+|... +|+.||||++...   ......+.+|+.+++++ +||||++++++|...  .
T Consensus         5 ~~~~y~--~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~   82 (337)
T cd07852           5 ILRKYE--ILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDK   82 (337)
T ss_pred             hhhHHH--HhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCc
Confidence            345566  8899999999999999864 6889999988532   22344567799999999 999999999998653  4


Q ss_pred             eeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      ..|+||||++ ++|.+++.. ..++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++....
T Consensus        83 ~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~  158 (337)
T cd07852          83 DIYLVFEYME-TDLHAVIRANILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLS  158 (337)
T ss_pred             eEEEEecccc-cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchhccc
Confidence            6899999997 599999876 457888889999999999999998   99999999999999999999999999987543


Q ss_pred             ccCCC-------CcccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc---------c----
Q 002875          756 LADGS-------FPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI---------D----  814 (872)
Q Consensus       756 ~~~~~-------~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~---------~----  814 (872)
                      .....       ...+..+|.+||... ....+.++|||||||++|||+||+.||...........         .    
T Consensus       159 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T cd07852         159 ELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIE  238 (337)
T ss_pred             cccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHH
Confidence            22111       111344567777654 34567889999999999999999998864322110000         0    


Q ss_pred             --------ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          815 --------GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       815 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                              ..+....................++.+++.+||+.||++|||+.+++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         239 SIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             HHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence                    0000000000000000011134567899999999999999999999975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.97  E-value=1.3e-31  Score=286.22  Aligned_cols=248  Identities=19%  Similarity=0.241  Sum_probs=181.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|++|.||+|.. .+|+.||||.+....   ...+.+.+|++++++++||||+++++++.+.+..|+||||++ 
T Consensus         6 ~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-   84 (294)
T PLN00009          6 KVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLD-   84 (294)
T ss_pred             EEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEeccc-
Confidence            778899999999999986 478999999986432   224567789999999999999999999999999999999996 


Q ss_pred             CChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccccCCC--
Q 002875          688 GNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       688 g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      +++.+++...    .++.....++.|++.||+|||+.   +|+||||||+||+++. ++.+||+|||++.........  
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~  161 (294)
T PLN00009         85 LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFT  161 (294)
T ss_pred             ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccccccccCCCccccc
Confidence            5888877542    25566778999999999999998   9999999999999985 557999999998654322111  


Q ss_pred             CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc---------cccccc------cccccc
Q 002875          761 FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP---------IDGLLG------EMYNEN  824 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~---------~~~~~~------~~~~~~  824 (872)
                      ...+...|.+||+..+ ..++.++||||+||++|||+||+.||..........         ......      ......
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (294)
T PLN00009        162 HEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAF  241 (294)
T ss_pred             cCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhc
Confidence            1123445677887654 456788999999999999999998886432110000         000000      000000


Q ss_pred             ccCCCCc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSSS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +......    .+....++.+++.+|++.||++||++++++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        242 PKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             ccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0000000    01223457889999999999999999999864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.6e-34  Score=300.37  Aligned_cols=388  Identities=27%  Similarity=0.398  Sum_probs=284.6

Q ss_pred             CCCCCEEECcCCcCc-ccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEe
Q 002875           41 LTSLISLDISRNNFS-GHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFL  119 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  119 (872)
                      |+-.|-.|+++|.++ +..|.....++.++.|.|....+. .+|+.++.|.+|++|.+++|++.. +-..++.++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence            444556677777766 456666777777777777776665 567777777777777777777763 34456777777777


Q ss_pred             eCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCc
Q 002875          120 HLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       120 ~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  199 (872)
                      .++.|++..                       .-+|..+..|..|..||||+|.++ ..|..+..-+++-.|+|++|+|.
T Consensus        84 ~~R~N~LKn-----------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   84 IVRDNNLKN-----------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             hhhcccccc-----------------------CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc
Confidence            777776632                       135556666777777777777776 56777777777778888888887


Q ss_pred             ccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeeccccccc-ccCCccC
Q 002875          200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS-GSLPENL  278 (872)
Q Consensus       200 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~~  278 (872)
                      .+...-|.+++.|-.||||+|++. .+|..+..+.+|++|.|++|++...-...+..+++|+.|.+++.+-+ ..+|.++
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl  218 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL  218 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence            666666778888888888888886 56667778888888888888776433344455677777777765433 3467777


Q ss_pred             CCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcE
Q 002875          279 GRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINY  358 (872)
Q Consensus       279 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  358 (872)
                      ..+.+|+.+|+|.|++.                         ..|..+-++.+|+.|+|++|+|+. +......+.+|++
T Consensus       219 d~l~NL~dvDlS~N~Lp-------------------------~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLP-------------------------IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLET  272 (1255)
T ss_pred             hhhhhhhhccccccCCC-------------------------cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhh
Confidence            78888888888888764                         334455667888888888888873 3444556778889


Q ss_pred             EEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCCCCCCCcCCccceeecccccc
Q 002875          359 IDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNL  438 (872)
Q Consensus       359 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l  438 (872)
                      |++|+|+++ .+|+.+..+++|+.|.+.+|.....-+|+.+..+..|+.+..++|.+.                      
T Consensus       273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE----------------------  329 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE----------------------  329 (1255)
T ss_pred             hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc----------------------
Confidence            999999988 678888899999999988886655667777777767776666655442                      


Q ss_pred             CCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcC
Q 002875          439 SGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSF  507 (872)
Q Consensus       439 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  507 (872)
                        ..|.++..|..|+.|.|++|++. .+|+++.-++.|+.||+..|.-.-..|..-..-++|..-++.+
T Consensus       330 --lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF  395 (1255)
T KOG0444|consen  330 --LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF  395 (1255)
T ss_pred             --cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence              67889999999999999999988 5789999999999999999987766666554446677766665

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=5.8e-32  Score=305.86  Aligned_cols=246  Identities=20%  Similarity=0.264  Sum_probs=180.1

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEe-------
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCY-------  673 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~-------  673 (872)
                      ....|.  +.+.+|+|+||.|||++. -||+.||||++....  +......+|+..+++++|||||+++..+.       
T Consensus       477 Y~~DFE--EL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  477 YLNDFE--ELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             HhhhhH--HHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            344566  899999999999999985 489999999997653  33455778999999999999999982110       


Q ss_pred             ----------------------------------------------------c---------------------------
Q 002875          674 ----------------------------------------------------N---------------------------  674 (872)
Q Consensus       674 ----------------------------------------------------~---------------------------  674 (872)
                                                                          +                           
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                                0                           


Q ss_pred             -------------------------C--------CeeEEEEcccCCCChHHHhhCCC---CHHHHHHHHHHHHHHHHHHh
Q 002875          675 -------------------------R--------HQAYLLYDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLH  718 (872)
Q Consensus       675 -------------------------~--------~~~~lv~ey~~~g~L~~~l~~~~---~~~~~~~i~~~i~~gl~~lH  718 (872)
                                               +        ...||=||||+.-.++++++...   .-...++++.+|++||+|+|
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH  714 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIH  714 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence                                     0        12478899999988888887643   24566899999999999999


Q ss_pred             hCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc------c--------------cCCCCcccccccCchhhhccc-
Q 002875          719 HDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ------L--------------ADGSFPAKIAWTESGEFYNAM-  777 (872)
Q Consensus       719 ~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~------~--------------~~~~~~~~~~~~~~~e~~~~~-  777 (872)
                      ..   +||||||||.||++|++..+||+|||+|....      .              ...+...|++.|++||..... 
T Consensus       715 ~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~  791 (1351)
T KOG1035|consen  715 DQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTS  791 (1351)
T ss_pred             hC---ceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccc
Confidence            99   99999999999999999999999999987511      0              011123367778899988654 


Q ss_pred             --CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCC
Q 002875          778 --KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP  855 (872)
Q Consensus       778 --~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp  855 (872)
                        +|+.|+|+||+|||++||+.   ||..++..  ..   .+....+...+.......+....-..++.++++.||++||
T Consensus       792 ~~~Yn~KiDmYSLGIVlFEM~y---PF~TsMER--a~---iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRP  863 (1351)
T KOG1035|consen  792 SNKYNSKIDMYSLGIVLFEMLY---PFGTSMER--AS---ILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRP  863 (1351)
T ss_pred             cccccchhhhHHHHHHHHHHhc---cCCchHHH--HH---HHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCC
Confidence              59999999999999999987   45433211  11   1111111111111111233334445778889999999999


Q ss_pred             CHHHHHH
Q 002875          856 SMEEALK  862 (872)
Q Consensus       856 t~~~v~~  862 (872)
                      |+.|+++
T Consensus       864 tA~eLL~  870 (1351)
T KOG1035|consen  864 TATELLN  870 (1351)
T ss_pred             CHHHHhh
Confidence            9999875

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.1e-31  Score=278.37  Aligned_cols=239  Identities=20%  Similarity=0.271  Sum_probs=189.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|++|.||+|+. .+|+.||||.+....   ...+.+.+|++++++++|||++++++++.+.+..++||||+++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   83 (254)
T cd06627           4 LGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAEN   83 (254)
T ss_pred             eeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCC
Confidence            678899999999999986 468899999997643   3456788999999999999999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      ++|.+++..  ..++.....++.|++.|+.|||+.   +|+||||||+||+++.++.+||+|||.+.........  ...
T Consensus        84 ~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~  160 (254)
T cd06627          84 GSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVV  160 (254)
T ss_pred             CcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccc
Confidence            999999875  467888899999999999999998   9999999999999999999999999998755433221  122


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      +...|.+||......++.++||||+|+++|||++|+.|+.........      ...........+   ......+.+++
T Consensus       161 ~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~i  231 (254)
T cd06627         161 GTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAAL------FRIVQDDHPPLP---EGISPELKDFL  231 (254)
T ss_pred             cchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHH------HHHhccCCCCCC---CCCCHHHHHHH
Confidence            344567778776666788899999999999999999988643321100      000000000111   11234677889


Q ss_pred             HHcccCCCCCCCCHHHHHH
Q 002875          844 LLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~  862 (872)
                      .+||..+|++|||++|++.
T Consensus       232 ~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         232 MQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             HHHHhCChhhCcCHHHHhc
Confidence            9999999999999999875

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-31  Score=286.16  Aligned_cols=247  Identities=20%  Similarity=0.232  Sum_probs=185.2

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~ey~  685 (872)
                      ..+.+|.|++|.||+|+.. +|+.||||++....   ...+.+.+|++++++++|||++++++++...  +..++||||+
T Consensus         3 ~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~   82 (287)
T cd07840           3 KIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYM   82 (287)
T ss_pred             eeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEeccc
Confidence            6778999999999999864 58999999997642   2345677899999999999999999999987  8899999999


Q ss_pred             CCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---C
Q 002875          686 PNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---G  759 (872)
Q Consensus       686 ~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~  759 (872)
                      ++ +|.+++...   .++.+...++.|+++|++|||+.   +++|+||||+||++++++.+|++|||++.......   .
T Consensus        83 ~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~  158 (287)
T cd07840          83 DH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADY  158 (287)
T ss_pred             cc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccc
Confidence            85 899888653   57888899999999999999998   99999999999999999999999999986543322   1


Q ss_pred             CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------ccccccc--cccc
Q 002875          760 SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGLL--GEMY  821 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~~--~~~~  821 (872)
                      .......+|.+||...+ ..++.++|||||||++|||+||+.||........               +......  ....
T Consensus       159 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (287)
T cd07840         159 TNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENL  238 (287)
T ss_pred             cccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhc
Confidence            11122344677776543 4568889999999999999999988864332110               0000000  0000


Q ss_pred             cccccCCCCc----hHH-HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 NENEVGSSSS----LQD-EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 ~~~~~~~~~~----~~~-~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ... ......    ... ....+.+++.+||..+|++||++++++++
T Consensus       239 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  284 (287)
T cd07840         239 KPK-KPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQH  284 (287)
T ss_pred             ccc-ccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            000 000000    011 14567899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.97  E-value=9.3e-32  Score=285.96  Aligned_cols=248  Identities=20%  Similarity=0.248  Sum_probs=188.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|.|++|.||+|.. .+|+.+|+|.+.....   ..+.+.+|++++++++||||+++++++.+++..++||||+++
T Consensus         3 ~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   82 (283)
T cd05118           3 KLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDT   82 (283)
T ss_pred             cceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCC
Confidence            567899999999999986 4788999999865322   355678899999999999999999999999999999999975


Q ss_pred             CChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCc
Q 002875          688 GNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFP  762 (872)
Q Consensus       688 g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~  762 (872)
                       ++.+++..   ..++.++..++.|+++|++|||..   +|+|+||||+||++++++.+||+|||.+........  ...
T Consensus        83 -~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~  158 (283)
T cd05118          83 -DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHY  158 (283)
T ss_pred             -CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCc
Confidence             88888865   457888999999999999999998   999999999999999999999999999865533221  112


Q ss_pred             ccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------ccccccccccc----------
Q 002875          763 AKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------PIDGLLGEMYN----------  822 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~~~~~~~~~~~----------  822 (872)
                      .+..++.+||..... ..+.++||||+||++|||+||+.||.........         +.........+          
T Consensus       159 ~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (283)
T cd05118         159 VVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFP  238 (283)
T ss_pred             cCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhc
Confidence            244557778877655 6788999999999999999999888643321100         00000000000          


Q ss_pred             -ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 -ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 -~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ..........+....++.+++.+||+.||.+||++++++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~  280 (283)
T cd05118         239 KKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAH  280 (283)
T ss_pred             cccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhC
Confidence             00000001112345678899999999999999999999864

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.97  E-value=1.7e-31  Score=290.85  Aligned_cols=246  Identities=20%  Similarity=0.222  Sum_probs=181.9

Q ss_pred             hhhccCCCCCceeeeec-CCCcEEEEEEeeccchh---------------HHHHHHHHHHhhccCCCCceeEEEEEecCC
Q 002875          613 CEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR---------------IKIVSEFITRIGTVRHKNLIRLLGFCYNRH  676 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~---------------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~  676 (872)
                      .+.||.|+||.||+|.. .+|+.||||.++.....               ...+.+|++++++++||||+++++++...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            46799999999999985 47999999998653221               124678999999999999999999999999


Q ss_pred             eeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ..++||||++ |+|.+++...  .++.....++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||++...
T Consensus        94 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~kl~dfg~~~~~  169 (335)
T PTZ00024         94 FINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGICKIADFGLARRY  169 (335)
T ss_pred             cEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCEEECCccceeec
Confidence            9999999997 6999998653  46778889999999999999998   9999999999999999999999999998654


Q ss_pred             ccc--------------CC--CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC-------
Q 002875          755 QLA--------------DG--SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN-------  810 (872)
Q Consensus       755 ~~~--------------~~--~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~-------  810 (872)
                      ...              ..  ....+..+|.+||...+ ..++.++||||+||++|||+||+.||........       
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~  249 (335)
T PTZ00024        170 GYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFEL  249 (335)
T ss_pred             ccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            310              00  01112344667776654 3468889999999999999999988864432110       


Q ss_pred             --------ccccccccccccccccCCCCc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          811 --------KPIDGLLGEMYNENEVGSSSS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       811 --------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                              ++....... +.+.....+..    ......++.+++.+|++.||++|||++|++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~  313 (335)
T PTZ00024        250 LGTPNEDNWPQAKKLPL-YTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKH  313 (335)
T ss_pred             hCCCchhhCcchhhccc-ccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcC
Confidence                    000000000 00000000000    11123567899999999999999999999864

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-34  Score=318.99  Aligned_cols=439  Identities=27%  Similarity=0.328  Sum_probs=271.4

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      |+.|||++|+++ ..|..+..+.+|+.|+++.|.|. ..|.+..++++|++|+|.+|.+. ..|.++..+.+|++|++++
T Consensus        47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF  123 (1081)
T ss_pred             eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence            999999999996 67899999999999999999998 57788999999999999999887 7999999999999999999


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      |.+. ..|..+..++.++.+..++|.....    ++... .+++++..|.+.+.++.++..+..  .||+.+|++.   -
T Consensus       124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~  192 (1081)
T KOG0618|consen  124 NHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---V  192 (1081)
T ss_pred             hccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---h
Confidence            9997 6898999999999999999932222    22222 778888888888888888887777  7999999886   2


Q ss_pred             ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCC
Q 002875          180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS  259 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  259 (872)
                      ..+..+.+|+.|.+..|++....    -.-++|+.|+.++|.++...+  -..-.+|+++++++|++++ +|+++..+++
T Consensus       193 ~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~-lp~wi~~~~n  265 (1081)
T KOG0618|consen  193 LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSN-LPEWIGACAN  265 (1081)
T ss_pred             hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhhc-chHHHHhccc
Confidence            34556677777777777765321    122345555555555442111  1112345555555555542 3355555555


Q ss_pred             cceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCC-------------
Q 002875          260 LEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSL-------------  326 (872)
Q Consensus       260 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~-------------  326 (872)
                      |+.+++.+|.+. .+|..+....+|+.|++..|.+. .+|+.......+..|++..|++....+..+             
T Consensus       266 le~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s  343 (1081)
T KOG0618|consen  266 LEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS  343 (1081)
T ss_pred             ceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh
Confidence            555555555553 34444444444444444444443 333333334444444444444433222222             


Q ss_pred             ------------CCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCc
Q 002875          327 ------------SNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGM  394 (872)
Q Consensus       327 ------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~  394 (872)
                                  ...+.|+.|++.+|.+++..-..+.+.++|+.|+|++|++.......+.++..|+.|++|+|      
T Consensus       344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN------  417 (1081)
T KOG0618|consen  344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN------  417 (1081)
T ss_pred             hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc------
Confidence                        22344555555555555444444455555555555555554333333444445555555555      


Q ss_pred             CCcccCCCcccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCC
Q 002875          395 IPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLP  474 (872)
Q Consensus       395 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  474 (872)
                                         .++........|..|++|..+.|.+. ..| .+..++.|+.+|+|.|+++...-..-...|
T Consensus       418 -------------------kL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p  476 (1081)
T KOG0618|consen  418 -------------------KLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP  476 (1081)
T ss_pred             -------------------hhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence                               44332222233444444444555554 345 566777777777777777653322222236


Q ss_pred             CCCEEECCCCccccccCccccCCCCCcEEECcCC
Q 002875          475 VLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFN  508 (872)
Q Consensus       475 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  508 (872)
                      +|++||+++|.-.......|..+..+...++.-|
T Consensus       477 ~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  477 NLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            7777777777754445555666666666666555

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=2.5e-31  Score=282.55  Aligned_cols=248  Identities=18%  Similarity=0.250  Sum_probs=183.8

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccch--hHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGAT--RIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.||+|++|.||+|+.. +|+.||||++.....  ......+|+..+++++ ||||+++++++.+++..++||||+ +
T Consensus         3 ~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~   81 (283)
T cd07830           3 VIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-E   81 (283)
T ss_pred             eheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-C
Confidence            6788999999999999974 588999999865432  2334456889999999 999999999999999999999999 7


Q ss_pred             CChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-Cc
Q 002875          688 GNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-FP  762 (872)
Q Consensus       688 g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-~~  762 (872)
                      |+|.+++...    .++.+...++.|++.|++|||+.   +++|+||||+||++++++.++|+|||++......... ..
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  158 (283)
T cd07830          82 GNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDY  158 (283)
T ss_pred             CCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCC
Confidence            8999988653    47889999999999999999998   9999999999999999999999999998754332211 11


Q ss_pred             ccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccc----cccccccc
Q 002875          763 AKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPID----GLLGEMYN  822 (872)
Q Consensus       763 ~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~----~~~~~~~~  822 (872)
                      .+..++.+||... ...++.++|||||||++|||+||+.||........               +...    ........
T Consensus       159 ~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (283)
T cd07830         159 VSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFP  238 (283)
T ss_pred             CCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccccccc
Confidence            2334566777653 44578899999999999999999988754321100               0000    00000000


Q ss_pred             ccccC-CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 ENEVG-SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~~~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..... ...........+.+++.+||+.||++|||++|++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         239 QFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             ccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            00000 000001113568899999999999999999999864

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.97  E-value=3.1e-31  Score=282.60  Aligned_cols=248  Identities=21%  Similarity=0.213  Sum_probs=182.2

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccch---hHHHHHHHHHHhhcc---CCCCceeEEEEEecCCe-----eE
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGAT---RIKIVSEFITRIGTV---RHKNLIRLLGFCYNRHQ-----AY  679 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l---~H~niv~l~~~~~~~~~-----~~  679 (872)
                      ..+.+|+|+||.||+|+.. +|+.||||.+.....   ....+.+|+.+++++   +||||+++++++.+.+.     .+
T Consensus         3 ~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~   82 (287)
T cd07838           3 ELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLT   82 (287)
T ss_pred             EEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeE
Confidence            6788999999999999975 589999999964321   133455677666555   69999999999988776     99


Q ss_pred             EEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      +||||++ ++|.+++..    ..++.+...++.|+++||+|||+.   +++|+||||+||+++.++.+|++|||++....
T Consensus        83 l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~  158 (287)
T cd07838          83 LVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLARIYS  158 (287)
T ss_pred             EEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCcceecc
Confidence            9999997 489888754    357889999999999999999998   99999999999999999999999999986653


Q ss_pred             ccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccccc-cc
Q 002875          756 LADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGL-LG  818 (872)
Q Consensus       756 ~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~-~~  818 (872)
                      ..... ...+...+.+||......++.++|||||||++|||+||..||........               ++.... ..
T Consensus       159 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (287)
T cd07838         159 FEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPR  238 (287)
T ss_pred             CCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccch
Confidence            32211 11133446778888777788899999999999999999877764321100               000000 00


Q ss_pred             cccccccc-CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 EMYNENEV-GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+..... .......+....+.+++.+||+.||++||+++|++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~  284 (287)
T cd07838         239 SSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQH  284 (287)
T ss_pred             hhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcC
Confidence            00000000 0011112344667899999999999999999999854

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.97  E-value=1.3e-31  Score=286.35  Aligned_cols=244  Identities=16%  Similarity=0.179  Sum_probs=179.6

Q ss_pred             hhhhccCCCCCceeeeecCC-CcEEEEEEeeccc--hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLPT-GITVSVKKIEWGA--TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|.|+||.||+|...+ |+.||||.++...  .....+.+|+..+.+.. ||||++++++|.+....|+||||++ 
T Consensus        19 ~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-   97 (296)
T cd06618          19 NLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS-   97 (296)
T ss_pred             eeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC-
Confidence            78899999999999999754 9999999997532  23445566777666665 9999999999999999999999985 


Q ss_pred             CChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-cc
Q 002875          688 GNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-PA  763 (872)
Q Consensus       688 g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-~~  763 (872)
                      +++.+....   ..++..+..++.|++.|++|||+.+  +|+||||||+||++++++.+||+|||++.......... ..
T Consensus        98 ~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~--~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~  175 (296)
T cd06618          98 TCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKH--GVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSA  175 (296)
T ss_pred             cCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC--CEecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCC
Confidence            477666543   4678888899999999999999731  89999999999999999999999999986543221111 11


Q ss_pred             cccccCchhhhccc----CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          764 KIAWTESGEFYNAM----KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       764 ~~~~~~~~e~~~~~----~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      +...|.+||.+...    .++.++|||||||++|||+||+.||........     ............ .+.......++
T Consensus       176 ~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~l  249 (296)
T cd06618         176 GCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFE-----VLTKILQEEPPS-LPPNEGFSPDF  249 (296)
T ss_pred             CCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHH-----HHHHHhcCCCCC-CCCCCCCCHHH
Confidence            23345677776543    367889999999999999999999864321110     011111111000 00001123467


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .+++.+||..||.+||++++++++-
T Consensus       250 ~~li~~~l~~~p~~Rp~~~~il~~~  274 (296)
T cd06618         250 CSFVDLCLTKDHRKRPKYRELLQHP  274 (296)
T ss_pred             HHHHHHHccCChhhCCCHHHHhcCh
Confidence            8899999999999999999998653

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=8.4e-32  Score=261.86  Aligned_cols=249  Identities=19%  Similarity=0.186  Sum_probs=188.3

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccch-hHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGAT-RIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|+|+|+.|-.++ +.+|+++|||++.+... .+....+|++++...+ |+||+++++||+++..+|||||-|.||
T Consensus        82 t~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GG  161 (463)
T KOG0607|consen   82 TSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGG  161 (463)
T ss_pred             HHHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCc
Confidence            46889999999998877 68999999999976533 3555667899988775 999999999999999999999999999


Q ss_pred             ChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC---CCeeEccccccccccccC-----
Q 002875          689 NLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN---MEPHLAEFGFKYLTQLAD-----  758 (872)
Q Consensus       689 ~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~---~~~ki~dfg~~~~~~~~~-----  758 (872)
                      .|..+|+++.  +..+..+++++||.||.|||..   +|.|||+||+|||-.+.   .-+||+||.+..-.....     
T Consensus       162 plLshI~~~~~F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spa  238 (463)
T KOG0607|consen  162 PLLSHIQKRKHFNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPA  238 (463)
T ss_pred             hHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCC
Confidence            9999998754  5566678999999999999999   99999999999998643   349999998864322111     


Q ss_pred             ----CCCcccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCC-CCCccccc--------ccccc
Q 002875          759 ----GSFPAKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSS-LQNKPIDG--------LLGEM  820 (872)
Q Consensus       759 ----~~~~~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~-~~~~~~~~--------~~~~~  820 (872)
                          -..+.+.+.+++||+..     ...|..+.|.||+|||+|-|++|-.||.+.-. ...|..-+        .+..+
T Consensus       239 stP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesI  318 (463)
T KOG0607|consen  239 STPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESI  318 (463)
T ss_pred             CCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHH
Confidence                11234556677777543     34678889999999999999999999985332 12232211        11111


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+...-.....+...+.+..+++...+..||.+|-++.+++++
T Consensus       319 QEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnh  361 (463)
T KOG0607|consen  319 QEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNH  361 (463)
T ss_pred             hccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCC
Confidence            1222111223445566677888899999999999999998863

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.97  E-value=7.2e-31  Score=282.10  Aligned_cols=240  Identities=19%  Similarity=0.232  Sum_probs=183.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||.+...    ....+.+.+|++++++++|||++++++++...+..++||||+.
T Consensus        19 ~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   98 (308)
T cd06634          19 DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL   98 (308)
T ss_pred             HHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC
Confidence            778899999999999986 56889999998642    1234467789999999999999999999999999999999997


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA  763 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~  763 (872)
                       |++.+.+..   ..++.+...++.|++.|++|||+.   +++||||||+||+++.++.+|++|||++.......  ...
T Consensus        99 -~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~--~~~  172 (308)
T cd06634          99 -GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN--XFV  172 (308)
T ss_pred             -CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeecCcc--ccc
Confidence             688877643   347778889999999999999998   99999999999999999999999999986543221  112


Q ss_pred             cccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          764 KIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       764 ~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      +...|.+||...   ....+.++|||||||++|||+||+.|+........  .    ....... .+.. ........+.
T Consensus       173 ~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~--~----~~~~~~~-~~~~-~~~~~~~~~~  244 (308)
T cd06634         173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA--L----YHIAQNE-SPAL-QSGHWSEYFR  244 (308)
T ss_pred             CCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHH--H----HHHhhcC-CCCc-CcccccHHHH
Confidence            334467777753   34567789999999999999999999864321110  0    0000000 0000 0112334577


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      +++.+||+.+|++||++++++++..
T Consensus       245 ~li~~cl~~~P~~Rp~~~~ll~~~~  269 (308)
T cd06634         245 NFVDSCLQKIPQDRPTSEVLLKHRF  269 (308)
T ss_pred             HHHHHHhhCCcccCCCHHHHhhCcc
Confidence            8999999999999999999997754

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=6.7e-31  Score=276.09  Aligned_cols=237  Identities=16%  Similarity=0.122  Sum_probs=177.1

Q ss_pred             hhhh--ccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhc-cCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEE--AARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~--~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.  +|.|+||.||++.. .+|+.+|+|.+........    |+..... .+||||+++++++..++..|+||||+++
T Consensus        18 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~----e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~   93 (267)
T PHA03390         18 IVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI----EPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKD   93 (267)
T ss_pred             cccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh----hHHHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCC
Confidence            4444  49999999999985 5788999999864322111    1211111 2699999999999999999999999999


Q ss_pred             CChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccccccCCCCccc
Q 002875          688 GNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       688 g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      |+|.+++...  .++.+...++.|+++|++|||+.   +++||||||+||+++.++ .++|+|||+++......  ...+
T Consensus        94 ~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~--~~~~  168 (267)
T PHA03390         94 GDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPS--CYDG  168 (267)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCc--cCCC
Confidence            9999999763  58889999999999999999998   999999999999999988 99999999986543221  1223


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ...+.+||+.....++.++||||+||++|||+||+.||....... ...... .......    .+........+.+++.
T Consensus       169 ~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~-~~~~~~-~~~~~~~----~~~~~~~~~~~~~li~  242 (267)
T PHA03390        169 TLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE-LDLESL-LKRQQKK----LPFIKNVSKNANDFVQ  242 (267)
T ss_pred             CCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch-hhHHHH-HHhhccc----CCcccccCHHHHHHHH
Confidence            445678888877778889999999999999999999987332111 000001 0111111    1111233456788899


Q ss_pred             HcccCCCCCCCC-HHHHHHH
Q 002875          845 LCTRSTPSDRPS-MEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt-~~~v~~~  863 (872)
                      +||+.||.+||+ ++|++++
T Consensus       243 ~~l~~~p~~R~~~~~~~l~h  262 (267)
T PHA03390        243 SMLKYNINYRLTNYNEIIKH  262 (267)
T ss_pred             HHhccChhhCCchHHHHhcC
Confidence            999999999996 6998754

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-31  Score=306.59  Aligned_cols=244  Identities=23%  Similarity=0.313  Sum_probs=188.8

Q ss_pred             hhhhccCCCCCceeeeec----CC----CcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL----PT----GITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~----~~----g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.+|+|.||.|++|..    ..    ...||||.++...  .+.+.+..|++.|+.+ +|||||.++|+|.+++..++
T Consensus       300 ~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~  379 (609)
T KOG0200|consen  300 LGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYV  379 (609)
T ss_pred             ccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEE
Confidence            445899999999999974    12    4579999998643  3467889999999987 59999999999999999999


Q ss_pred             EEcccCCCChHHHhhCCC------------------CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          681 LYDYLPNGNLSEKIRTKR------------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~~------------------~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      |+||++.|+|.++++...                  .....+.++.|||.|++||++.   ++||||+.++|||+.++..
T Consensus       380 v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDLAaRNVLi~~~~~  456 (609)
T KOG0200|consen  380 IVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDLAARNVLITKNKV  456 (609)
T ss_pred             EEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---CccchhhhhhhEEecCCCE
Confidence            999999999999997643                  3456678999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCCC----Cc--ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccc
Q 002875          743 PHLAEFGFKYLTQLADGS----FP--AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGL  816 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~~----~~--~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~  816 (872)
                      +||+|||+++........    ..  ....|+++ |......++.++|||||||++||++|.+.+++.+....... ...
T Consensus       457 ~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmAp-Esl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l-~~~  534 (609)
T KOG0200|consen  457 IKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAP-ESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEEL-LEF  534 (609)
T ss_pred             EEEccccceeccCCCCceEecCCCCccceeecCH-HHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHH-HHH
Confidence            999999999853322111    11  23445554 66666889999999999999999999887766542211111 111


Q ss_pred             ccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          817 LGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      +.+...   ...+..   +..++.++|..||+.+|++||++.|+.+.+..
T Consensus       535 l~~G~r---~~~P~~---c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~  578 (609)
T KOG0200|consen  535 LKEGNR---MEQPEH---CSDEIYDLMKSCWNADPEDRPTFSECVEFFEK  578 (609)
T ss_pred             HhcCCC---CCCCCC---CCHHHHHHHHHHhCCCcccCCCHHHHHHHHHH
Confidence            111111   111222   24567799999999999999999999998876

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=4e-31  Score=281.96  Aligned_cols=243  Identities=14%  Similarity=0.091  Sum_probs=182.4

Q ss_pred             hhhhccCCCCCceeeeec----CCCcEEEEEEeeccc-----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGA-----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv  681 (872)
                      ..+.+|.|+||.||++..    ++|+.||+|.+....     ...+.+.+|+.+++++ +||||+++++++..++..|+|
T Consensus         4 ~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (290)
T cd05613           4 LLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLI   83 (290)
T ss_pred             eeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEE
Confidence            678899999999999885    478999999987532     2345678899999999 589999999999999999999


Q ss_pred             EcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          682 YDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      |||+++|+|.+++...  .++.+...++.|+++||+|||+.   +++||||||+||+++.++.+||+|||+++.......
T Consensus        84 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  160 (290)
T cd05613          84 LDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEV  160 (290)
T ss_pred             EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCccceecccccc
Confidence            9999999999998653  46677778888999999999998   999999999999999999999999999875432211


Q ss_pred             C---CcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          760 S---FPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       760 ~---~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      .   ...+...|.+||....  ...+.++|||||||++|||+||..|+........  ............ .+.+   ..
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~--~~~~~~~~~~~~-~~~~---~~  234 (290)
T cd05613         161 ERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNS--QAEISRRILKSE-PPYP---QE  234 (290)
T ss_pred             cccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCcccc--HHHHHHHhhccC-CCCC---cc
Confidence            1   1123344667776643  2456789999999999999999999863221110  001111111111 1111   11


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-----CHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      ....+.+++.+||+.||++||     ++++++++
T Consensus       235 ~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~  268 (290)
T cd05613         235 MSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKH  268 (290)
T ss_pred             CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcC
Confidence            234577889999999999997     77777654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=6.6e-31  Score=276.11  Aligned_cols=240  Identities=16%  Similarity=0.190  Sum_probs=184.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc------chhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG------ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~------~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~  682 (872)
                      ..+.+|+|+||.||+|.. .+|+.||+|.+...      ....+.+.+|++++++++||||+++++++.+.  +..++||
T Consensus         6 ~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~   85 (264)
T cd06653           6 LGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFV   85 (264)
T ss_pred             eeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEE
Confidence            788999999999999985 56999999987532      12345778899999999999999999998764  4688999


Q ss_pred             cccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          683 DYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      ||+++++|.+++..  ..++.....++.|++.|++|||+.   +++||||||+||+++.++.++|+|||+++....... 
T Consensus        86 e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~  162 (264)
T cd06653          86 EYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMS  162 (264)
T ss_pred             EeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcccccccccccccc
Confidence            99999999999875  356788889999999999999999   999999999999999999999999999865422110 


Q ss_pred             ----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          760 ----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       760 ----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                          ....+...|.+||.......+.++|||||||++|||+||+.||.+.....      ...+.......  .......
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~~~--~~~p~~~  234 (264)
T cd06653         163 GTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMA------AIFKIATQPTK--PMLPDGV  234 (264)
T ss_pred             CccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHH------HHHHHHcCCCC--CCCCccc
Confidence                11123445778888877778889999999999999999999986432111      01111111000  1111223


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.+.+++.+|++ +|.+|||+.+++.+
T Consensus       235 ~~~~~~~i~~~l~-~~~~r~~~~~~~~~  261 (264)
T cd06653         235 SDACRDFLKQIFV-EEKRRPTAEFLLRH  261 (264)
T ss_pred             CHHHHHHHHHHhc-CcccCccHHHHhcC
Confidence            3567788899999 57999999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.8e-31  Score=290.25  Aligned_cols=254  Identities=21%  Similarity=0.259  Sum_probs=191.3

Q ss_pred             chhhhccCCCCCceeeeecC-CCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCC-----eeEEE
Q 002875          611 TECEEAARPQSAAGCKAVLP-TGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-----QAYLL  681 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----~~~lv  681 (872)
                      ...+.+|+|++|.||+|+.. +|+.||||++...   ....+.+.+|++++++++||||+++++++...+     ..|+|
T Consensus         3 ~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv   82 (330)
T cd07834           3 ELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIV   82 (330)
T ss_pred             eeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEE
Confidence            36788999999999999964 5899999998753   234567888999999999999999999998765     78999


Q ss_pred             EcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-
Q 002875          682 YDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-  758 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-  758 (872)
                      |||++ ++|.+++...  .++.....++.|+++||+|||+.   +|+||||||+||+++.++.++++|||++....... 
T Consensus        83 ~e~~~-~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~  158 (330)
T cd07834          83 TELME-TDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDED  158 (330)
T ss_pred             ecchh-hhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEeeccccc
Confidence            99998 5899988764  57888899999999999999999   99999999999999999999999999987654322 


Q ss_pred             ----CCCcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------ccc--------ccc
Q 002875          759 ----GSFPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------KPI--------DGL  816 (872)
Q Consensus       759 ----~~~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------~~~--------~~~  816 (872)
                          .....+..+|.+||...+. .++.++||||+||++|||+||+.||........         .+.        ...
T Consensus       159 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  238 (330)
T cd07834         159 EKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEK  238 (330)
T ss_pred             ccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccc
Confidence                1112245567788887666 788899999999999999999998864331100         000        000


Q ss_pred             ccccccccccCCC----CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH--HcccC
Q 002875          817 LGEMYNENEVGSS----SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGLK  868 (872)
Q Consensus       817 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~~  868 (872)
                      .............    .........+.+++.+||+.||++|||+++++++  ++.++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~  296 (330)
T cd07834         239 ARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLH  296 (330)
T ss_pred             hhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhc
Confidence            0000000000000    0011234567899999999999999999999976  44443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.97  E-value=3e-31  Score=284.84  Aligned_cols=252  Identities=20%  Similarity=0.256  Sum_probs=184.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCC-----
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-----  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----  676 (872)
                      +.|.  ..+.+|+|+||.||+|+. .+|+.||||.++...   .....+.+|++++++++||||+++++++.+..     
T Consensus         7 ~~~~--~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           7 DKFD--IIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhh--eeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            4455  788999999999999997 468999999997532   22345678999999999999999999987654     


Q ss_pred             -----eeEEEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccc
Q 002875          677 -----QAYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF  748 (872)
Q Consensus       677 -----~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~df  748 (872)
                           ..++||||+++ ++.+.+..   ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+||
T Consensus        85 ~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl~df  160 (302)
T cd07864          85 KKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKLADF  160 (302)
T ss_pred             cccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEeCcc
Confidence                 78999999986 77777764   358889999999999999999999   9999999999999999999999999


Q ss_pred             cccccccccCCC---CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------cccc
Q 002875          749 GFKYLTQLADGS---FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------PIDG  815 (872)
Q Consensus       749 g~~~~~~~~~~~---~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~~~~  815 (872)
                      |++.........   .......|.+||.+.. ...+.++|||||||++|||++|+.||.........         +...
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (302)
T cd07864         161 GLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPA  240 (302)
T ss_pred             cccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChh
Confidence            998754322211   1112334667776643 34678899999999999999998888643211100         0000


Q ss_pred             cccccc--------ccccc---CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          816 LLGEMY--------NENEV---GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       816 ~~~~~~--------~~~~~---~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.        +....   ............+.+++..||+.||++|||+++++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  299 (302)
T cd07864         241 VWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNS  299 (302)
T ss_pred             hcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            000000        00000   0000011124567899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.97  E-value=3.5e-31  Score=282.36  Aligned_cols=246  Identities=13%  Similarity=0.123  Sum_probs=174.5

Q ss_pred             chhhhccCCCCCceeeeecCC----CcEEEEEEeeccchh--H----------HHHHHHHHHhhccCCCCceeEEEEEec
Q 002875          611 TECEEAARPQSAAGCKAVLPT----GITVSVKKIEWGATR--I----------KIVSEFITRIGTVRHKNLIRLLGFCYN  674 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~----g~~vavK~~~~~~~~--~----------~~~~~e~~~l~~l~H~niv~l~~~~~~  674 (872)
                      ...+.||+|+||.||+|...+    +..+|+|........  .          .....+...+..+.|+||+++++++..
T Consensus        15 ~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~   94 (294)
T PHA02882         15 KIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSF   94 (294)
T ss_pred             EEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeE
Confidence            388899999999999998644    456667654322111  0          011223344566789999999998765


Q ss_pred             CC----eeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccc
Q 002875          675 RH----QAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF  748 (872)
Q Consensus       675 ~~----~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~df  748 (872)
                      ..    ..+++||++.. ++.+.+...  .++.....++.|+++|++|||+.   +|+||||||+||+++.++.+||+||
T Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~~~~~~l~DF  170 (294)
T PHA02882         95 KRCRMYYRFILLEKLVE-NTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVDGNNRGYIIDY  170 (294)
T ss_pred             ecCCceEEEEEEehhcc-CHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCcEEEEEc
Confidence            43    45788998854 666666542  36677789999999999999998   9999999999999999999999999


Q ss_pred             cccccccccC---------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc---ccc
Q 002875          749 GFKYLTQLAD---------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI---DGL  816 (872)
Q Consensus       749 g~~~~~~~~~---------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~---~~~  816 (872)
                      |+++......         .....++.+|++||...+..++.++|||||||++|||+||+.||...........   .+.
T Consensus       171 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~  250 (294)
T PHA02882        171 GIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDF  250 (294)
T ss_pred             CCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHH
Confidence            9987542211         1112356678888988888899999999999999999999999875422111100   011


Q ss_pred             ccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          817 LGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ..++.... ..    .....+.+.+++..|++.+|++||+++++.+.+.
T Consensus       251 ~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~~  294 (294)
T PHA02882        251 IKRLHEGK-IK----IKNANKFIYDFIECVTKLSYEEKPDYDALIKIFD  294 (294)
T ss_pred             HHHhhhhh-hc----cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence            11111111 00    1112356778899999999999999999998763

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-30  Score=282.55  Aligned_cols=247  Identities=20%  Similarity=0.246  Sum_probs=181.6

Q ss_pred             hhhhccCCCCCceeeeecC---CCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLP---TGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~---~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~  682 (872)
                      ....+|+|+||.||+|...   +|+.||||.+....    ...+.+.+|+.++++++||||+++++++.+.  +..++||
T Consensus         4 ~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~   83 (316)
T cd07842           4 IEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLF   83 (316)
T ss_pred             EEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEE
Confidence            6778999999999999964   58899999997632    2245667889999999999999999999987  7899999


Q ss_pred             cccCCCChHHHhhC-------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC----CCCeeEcccccc
Q 002875          683 DYLPNGNLSEKIRT-------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE----NMEPHLAEFGFK  751 (872)
Q Consensus       683 ey~~~g~L~~~l~~-------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~----~~~~ki~dfg~~  751 (872)
                      ||+++ ++.+.+..       ..+......++.|++.|++|||+.   +|+||||||+||+++.    ++.+|++|||++
T Consensus        84 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          84 DYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             eCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence            99975 77776642       235667789999999999999999   9999999999999999    899999999998


Q ss_pred             ccccccCC-----CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc--cc-----cc---
Q 002875          752 YLTQLADG-----SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK--PI-----DG---  815 (872)
Q Consensus       752 ~~~~~~~~-----~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~--~~-----~~---  815 (872)
                      +.......     ....+..+|.+||...+ ..++.++|||||||++|||+||..||.........  +.     ..   
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (316)
T cd07842         160 RLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFE  239 (316)
T ss_pred             cccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHH
Confidence            75432211     11123345677786654 45788899999999999999999888643321100  00     00   


Q ss_pred             cc-----------------cc---cccccccCCCCchH-------HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          816 LL-----------------GE---MYNENEVGSSSSLQ-------DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       816 ~~-----------------~~---~~~~~~~~~~~~~~-------~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+                 ..   ........ .....       ....++.+++.+|++.||++|||++|++++
T Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~  313 (316)
T cd07842         240 VLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYP-SNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEH  313 (316)
T ss_pred             HhCCCchhHHHHHhhcccchhhhhhccCCCCC-CccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            00                 00   00000000 01111       123467899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.97  E-value=4.2e-31  Score=281.51  Aligned_cols=246  Identities=13%  Similarity=0.080  Sum_probs=184.6

Q ss_pred             hhhhccCCCCCceeeeec----CCCcEEEEEEeeccc-----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGA-----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv  681 (872)
                      ..+.+|+|++|.||++..    .+++.||||.++...     ...+.+.+|+.++.++ +||||+++++.+..++..++|
T Consensus         4 ~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   83 (288)
T cd05583           4 LLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLI   83 (288)
T ss_pred             EEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEE
Confidence            678899999999999874    467899999987432     2245677899999999 599999999999999999999


Q ss_pred             EcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          682 YDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      |||+++|+|.+++...  .++.+...++.|+++||+|||+.   +++||||||+||+++.++.++++|||+++.......
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  160 (288)
T cd05583          84 LDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEE  160 (288)
T ss_pred             EecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECccccccccccc
Confidence            9999999999998653  46778888999999999999998   999999999999999999999999999865332211


Q ss_pred             C---CcccccccCchhhhcccC--CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          760 S---FPAKIAWTESGEFYNAMK--EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       760 ~---~~~~~~~~~~~e~~~~~~--~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      .   ...+...|.+||...+..  .+.++||||||+++|||+||..|+.........  ........... ...+.   .
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~-~~~~~---~  234 (288)
T cd05583         161 ERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQ--SEISRRILKSK-PPFPK---T  234 (288)
T ss_pred             cccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchH--HHHHHHHHccC-CCCCc---c
Confidence            1   111333466777765443  677899999999999999999998633211100  00011111111 11111   1


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      ....+.+++.+||+.||++|||+.++.+.|+.
T Consensus       235 ~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~  266 (288)
T cd05583         235 MSAEARDFIQKLLEKDPKKRLGANGADEIKNH  266 (288)
T ss_pred             cCHHHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence            22456788999999999999998888776653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=5e-31  Score=280.16  Aligned_cols=248  Identities=21%  Similarity=0.259  Sum_probs=186.6

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|++|.||+|+.. +|+.||+|.+....   ...+.+..|++++++++||||+++++++.+.+..++||||++ 
T Consensus         3 ~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-   81 (282)
T cd07829           3 KLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD-   81 (282)
T ss_pred             eehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC-
Confidence            5678999999999999975 59999999997642   224566788999999999999999999999999999999998 


Q ss_pred             CChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC--c
Q 002875          688 GNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF--P  762 (872)
Q Consensus       688 g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~--~  762 (872)
                      ++|.+++...   .++.++..++.|+++|++|||..   +|+||||+|+||++++++.+||+|||+++.........  .
T Consensus        82 ~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~  158 (282)
T cd07829          82 MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHE  158 (282)
T ss_pred             cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccCCCccccCcc
Confidence            5999999764   57888999999999999999999   99999999999999999999999999987543322111  1


Q ss_pred             ccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccccc---ccccccc
Q 002875          763 AKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGL---LGEMYNE  823 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~---~~~~~~~  823 (872)
                      ....++.+||..... .++.++|||||||++|||+||+.||........               +.....   .......
T Consensus       159 ~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (282)
T cd07829         159 VVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPK  238 (282)
T ss_pred             ccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccc
Confidence            123446777876554 778889999999999999999888754321100               000000   0000000


Q ss_pred             cccC-CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          824 NEVG-SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       824 ~~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .... .....+.....+.+++.+||+.||++||+++|++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  279 (282)
T cd07829         239 FPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKH  279 (282)
T ss_pred             cCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhC
Confidence            0000 000011224568899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.97  E-value=1.2e-30  Score=280.90  Aligned_cols=238  Identities=20%  Similarity=0.239  Sum_probs=181.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|+. .+|+.||+|++....    ...+.+.+|++++++++|||++++++++.+.+..|+||||++
T Consensus        25 ~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  104 (313)
T cd06633          25 GLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL  104 (313)
T ss_pred             cceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCC
Confidence            556799999999999986 578899999986432    223467789999999999999999999999999999999996


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA  763 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~  763 (872)
                       |++.+++..   ..++.+...++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++......  ....
T Consensus       105 -~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~--~~~~  178 (313)
T cd06633         105 -GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA--NSFV  178 (313)
T ss_pred             -CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcccCCC--CCcc
Confidence             588887754   357888899999999999999998   9999999999999999999999999987543211  1122


Q ss_pred             cccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          764 KIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       764 ~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      +...|.+||+..   ...++.++|||||||++|||++|..|+..........      ...........  .......+.
T Consensus       179 ~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~l~  250 (313)
T cd06633         179 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALY------HIAQNDSPTLQ--SNEWTDSFR  250 (313)
T ss_pred             ccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHH------HHHhcCCCCCC--ccccCHHHH
Confidence            344567778763   3457788999999999999999999987543211000      00000000000  011223577


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||+.+|.+||++++++++
T Consensus       251 ~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         251 GFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             HHHHHHccCChhhCcCHHHHhcC
Confidence            88999999999999999999865

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.97  E-value=1.2e-30  Score=273.16  Aligned_cols=240  Identities=16%  Similarity=0.192  Sum_probs=189.5

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|++|.||++... +|+.||+|++....   ...+.+.+|++.+++++|||++++++.+...+..++||||+++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~   83 (258)
T cd08215           4 IIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADG   83 (258)
T ss_pred             EEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCC
Confidence            6788999999999999964 68999999997542   3456788899999999999999999999999999999999999


Q ss_pred             CChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--C
Q 002875          688 GNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--G  759 (872)
Q Consensus       688 g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~  759 (872)
                      ++|.+++..      ..++.+...++.+++.|++|||..   +++|+||+|+||+++.++.++|+|||++.......  .
T Consensus        84 ~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~  160 (258)
T cd08215          84 GDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLA  160 (258)
T ss_pred             CcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeecccCccee
Confidence            999999864      347888899999999999999999   99999999999999999999999999986543321  1


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ....+...+.+||......++.++||||+|+++|||++|+.|+.......      .............+.   .....+
T Consensus       161 ~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~  231 (258)
T cd08215         161 KTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLE------LALKILKGQYPPIPS---QYSSEL  231 (258)
T ss_pred             cceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHH------HHHHHhcCCCCCCCC---CCCHHH
Confidence            11123445677887777778889999999999999999998886433110      001111111011111   223467


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||..+|++|||+.|++++
T Consensus       232 ~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         232 RNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             HHHHHHHcCCChhhCcCHHHHhcC
Confidence            789999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.97  E-value=4.7e-31  Score=287.74  Aligned_cols=253  Identities=20%  Similarity=0.253  Sum_probs=185.8

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCC---
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH---  676 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~---  676 (872)
                      +.+.|.  ..+.+|+|+||.||+|.. .+|+.||||++....   ...+.+.+|+.++++++||||+++++++..+.   
T Consensus        13 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          13 VPDRYR--DLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             cccceE--EEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            334455  888999999999999984 679999999986422   22446778999999999999999999987643   


Q ss_pred             ---eeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          677 ---QAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       677 ---~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                         ..++||||+ +++|.+++.. ..++.....++.|+++|++|||+.   +|+||||||+||+++.++.+|++|||++.
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~dfg~~~  166 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLAR  166 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccccc
Confidence               468999999 6799988865 568888999999999999999998   99999999999999999999999999987


Q ss_pred             cccccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc---------cccccc----
Q 002875          753 LTQLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP---------IDGLLG----  818 (872)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~---------~~~~~~----  818 (872)
                      ........ ..+..+|++||.... ..++.++||||+||++||+++|..||..........         ......    
T Consensus       167 ~~~~~~~~-~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (343)
T cd07880         167 QTDSEMTG-YVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQS  245 (343)
T ss_pred             ccccCccc-cccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcc
Confidence            54322211 123445677786654 457788999999999999999999987443210000         000000    


Q ss_pred             ----ccccccccCCCCc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 ----EMYNENEVGSSSS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ----~~~~~~~~~~~~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                          ......+......    .......+.+++.+|++.||++|||+.+++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~  298 (343)
T cd07880         246 EDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAH  298 (343)
T ss_pred             hhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                0000000000000    01223457899999999999999999999843

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.97  E-value=6.5e-31  Score=286.85  Aligned_cols=253  Identities=21%  Similarity=0.268  Sum_probs=185.3

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC----
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR----  675 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~----  675 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||+++...   ...+.+.+|+.++++++||||+++++++...    
T Consensus        15 ~~~~y~--~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~   92 (345)
T cd07877          15 VPERYQ--NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE   92 (345)
T ss_pred             ccCceE--EEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeeccccc
Confidence            344555  788999999999999985 679999999987532   2345677899999999999999999988643    


Q ss_pred             --CeeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          676 --HQAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       676 --~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                        ...|+|+|++ +++|.+++.. ..++.....++.|+++|++|||+.   +|+||||||+||++++++.+||+|||+++
T Consensus        93 ~~~~~~lv~~~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~dfg~~~  168 (345)
T cd07877          93 EFNDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR  168 (345)
T ss_pred             ccccEEEEehhc-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCCCEEEecccccc
Confidence              3478899987 7899988865 468888999999999999999999   99999999999999999999999999987


Q ss_pred             cccccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc---------cccccc----
Q 002875          753 LTQLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP---------IDGLLG----  818 (872)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~---------~~~~~~----  818 (872)
                      ....... ...+..+|.+||.... ..++.++|||||||++|||+||+.||..........         ......    
T Consensus       169 ~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (345)
T cd07877         169 HTDDEMT-GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISS  247 (345)
T ss_pred             ccccccc-ccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhccc
Confidence            5432211 1223445677887644 467788999999999999999999886432211000         000000    


Q ss_pred             ----ccccc-cccCCCC---chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 ----EMYNE-NEVGSSS---SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ----~~~~~-~~~~~~~---~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                          ..... ...+...   ........+.+++.+|++.||.+||++.+++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         248 ESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             HhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence                00000 0000000   000123457899999999999999999999865

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.97  E-value=8.4e-32  Score=273.83  Aligned_cols=239  Identities=14%  Similarity=0.102  Sum_probs=189.9

Q ss_pred             cCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          608 FNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      |.  ...++|+|+||+||-+.. .+|+.+|.|++.+..    ........|-.++.+++.|.||.+--+|++.+..++||
T Consensus       187 F~--~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL  264 (591)
T KOG0986|consen  187 FR--VYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL  264 (591)
T ss_pred             ee--eeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence            55  778999999999998874 789999999996532    23445678889999999999999999999999999999


Q ss_pred             cccCCCChHHHhhCCC----CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          683 DYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       683 ey~~~g~L~~~l~~~~----~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ..|.||||.-+|.+.+    +..+.+.++.+|+.||++||+.   +||.||+||+|||||++|+++|+|.|+|..+....
T Consensus       265 tlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~  341 (591)
T KOG0986|consen  265 TLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGK  341 (591)
T ss_pred             EeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEEecCCCC
Confidence            9999999999997643    5667788999999999999999   99999999999999999999999999997765544


Q ss_pred             CCCc-ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          759 GSFP-AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       759 ~~~~-~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      .... .++..|++||+.....|+...|.||+||++|||+.|+.||........+   +.+.+.....+...+   +...+
T Consensus       342 ~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~---eEvdrr~~~~~~ey~---~kFS~  415 (591)
T KOG0986|consen  342 PIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKR---EEVDRRTLEDPEEYS---DKFSE  415 (591)
T ss_pred             ccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhH---HHHHHHHhcchhhcc---cccCH
Confidence            3333 5777899999998888999999999999999999999999744322111   111122211111112   23445


Q ss_pred             HHHHHHHHcccCCCCCCCCH
Q 002875          838 LVLDVALLCTRSTPSDRPSM  857 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~  857 (872)
                      ++.++....|..||++|--.
T Consensus       416 eakslc~~LL~Kdp~~RLGc  435 (591)
T KOG0986|consen  416 EAKSLCEGLLTKDPEKRLGC  435 (591)
T ss_pred             HHHHHHHHHHccCHHHhccC
Confidence            56677777889999999643

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.97  E-value=8.7e-31  Score=283.53  Aligned_cols=251  Identities=20%  Similarity=0.269  Sum_probs=184.3

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEec-CCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYN-RHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~l  680 (872)
                      +.|.  ....+|+|+||.||+|.. .+|+.||||++...   ....+.+.+|++++++++|||||+++++|.. .+..|+
T Consensus        10 ~~y~--~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~l   87 (328)
T cd07856          10 NRYV--DLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYF   87 (328)
T ss_pred             cceE--EEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEE
Confidence            3454  789999999999999984 58999999988542   2234567789999999999999999999876 457899


Q ss_pred             EEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          681 LYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||||+ +++|.++++. ..++.....++.|+++|++|||+.   +|+||||||+||++++++.+|++|||.+........
T Consensus        88 v~e~~-~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~  163 (328)
T cd07856          88 VTELL-GTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLARIQDPQMT  163 (328)
T ss_pred             Eeehh-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCccccccccCCCcC
Confidence            99999 5699988875 446777788999999999999999   999999999999999999999999999865432211


Q ss_pred             CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------ccccccc--------ccc
Q 002875          760 SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------PIDGLLG--------EMY  821 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~~~~~~~--------~~~  821 (872)
                      . ..+...+.+||.... ..++.++|||||||++|||+||+.||.........         +......        +..
T Consensus       164 ~-~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (328)
T cd07856         164 G-YVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFV  242 (328)
T ss_pred             C-CcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHH
Confidence            1 123344667776544 56788899999999999999999888643210000         0000000        000


Q ss_pred             ----cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 ----NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 ----~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                          ...+.+.....+.....+.+++.+|++.+|++|||+++++.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         243 QSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             hhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                000000000011123568899999999999999999999865

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-32  Score=261.61  Aligned_cols=243  Identities=16%  Similarity=0.159  Sum_probs=177.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHH-hhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITR-IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~-l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ....||+|+||+|+|-.. ++|+.+|||+++...  .+.+.+..|.+. |+.-+.||||+++|.+..++..++.||.|.-
T Consensus        68 dlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~  147 (361)
T KOG1006|consen   68 DLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDI  147 (361)
T ss_pred             HHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhh
Confidence            567899999999999874 789999999997532  345566666665 5556789999999999999999999999964


Q ss_pred             CChHHHhhC-------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-C
Q 002875          688 GNLSEKIRT-------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-G  759 (872)
Q Consensus       688 g~L~~~l~~-------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-~  759 (872)
                       |++.+-+.       ..+..-.-.|..-...||.||-...  .|||||+||+|||+|..|.+|++|||++......- .
T Consensus       148 -SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAk  224 (361)
T KOG1006|consen  148 -SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAK  224 (361)
T ss_pred             -hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchHhHHHHHHh
Confidence             77654322       3344444467777889999998764  89999999999999999999999999986433221 1


Q ss_pred             CCcccccccCchhhhc-c-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc--CCCCchHHH
Q 002875          760 SFPAKIAWTESGEFYN-A-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV--GSSSSLQDE  835 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~-~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  835 (872)
                      +..++...|++||.+. . ..+..++||||+|+++||++||.-|....++     ..+++.+++...++  .........
T Consensus       225 T~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s-----vfeql~~Vv~gdpp~l~~~~~~~~~  299 (361)
T KOG1006|consen  225 TVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS-----VFEQLCQVVIGDPPILLFDKECVHY  299 (361)
T ss_pred             hhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH-----HHHHHHHHHcCCCCeecCccccccc
Confidence            1122333355556543 2 3488999999999999999999999865432     22333333332212  112222334


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      ...+..++..|+.+|-.+||...++.+
T Consensus       300 s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  300 SFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             CHHHHHHHHHHhhcccccCcchhhhhc
Confidence            567889999999999999999988764

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-31  Score=274.44  Aligned_cols=246  Identities=18%  Similarity=0.183  Sum_probs=195.7

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCee
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  678 (872)
                      .++.-|   ..+.+|.|+||.||-|+. .+|+.||||.+.+-   .++...+++|+.+++.++||-||.+.-.|++++..
T Consensus       562 tvYQif---~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~erv  638 (888)
T KOG4236|consen  562 TVYQIF---ADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERV  638 (888)
T ss_pred             HHHHhh---hHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceE
Confidence            344445   478999999999999984 78999999999753   34567899999999999999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC---CCeeEcccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN---MEPHLAEFGFK  751 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~---~~~ki~dfg~~  751 (872)
                      +.|||-+ +||..+.|-.    +++....+.++.||+.||.|||..   +|+|+|+||+|||+.+.   -.+|++|||+|
T Consensus       639 FVVMEKl-~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfA  714 (888)
T KOG4236|consen  639 FVVMEKL-HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFA  714 (888)
T ss_pred             EEEehhh-cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccce
Confidence            9999999 4687777642    334444567889999999999999   99999999999999754   36999999999


Q ss_pred             ccccccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          752 YLTQLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       752 ~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      +......-. ...+++.|.+||+.....|....|+||.|||+|.-++|.-||.++++..+..  +...-++.+.      
T Consensus       715 RiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQI--QNAaFMyPp~------  786 (888)
T KOG4236|consen  715 RIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQI--QNAAFMYPPN------  786 (888)
T ss_pred             eecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHh--hccccccCCC------
Confidence            987654332 2337777899999998899999999999999999999999998766543211  1122233222      


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.+.....++++...++..-++|-|.+..+.+
T Consensus       787 PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh  819 (888)
T KOG4236|consen  787 PWSEISPEAIDLINNLLQVKMRKRYSVDKSLSH  819 (888)
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHhcchHhhccc
Confidence            245566678888888888888999998876543

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.97  E-value=9.6e-31  Score=274.31  Aligned_cols=239  Identities=14%  Similarity=0.131  Sum_probs=180.6

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeecc------chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWG------ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~------~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.+|+|+||.||++... .+..+++|.++..      ......+..|+.++++++||||+++++++.+.+..++||||
T Consensus         4 i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (260)
T cd08222           4 LQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEY   83 (260)
T ss_pred             eeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEe
Confidence            6788999999999999863 3455666665431      12234566788999999999999999999998999999999


Q ss_pred             cCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          685 LPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       685 ~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      +++++|.+++..      ..++.+...++.|+++|++|||+.   +++|+|+||+||++++ +.+|++|||+++......
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~  159 (260)
T cd08222          84 CEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSC  159 (260)
T ss_pred             CCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCceeecCCCc
Confidence            999999998853      357888899999999999999998   9999999999999985 569999999986543221


Q ss_pred             CC--CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          759 GS--FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       759 ~~--~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      ..  ...+...+.+||......++.++||||||+++|||++|..|+.+.....      ......... .  +.......
T Consensus       160 ~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~-~--~~~~~~~~  230 (260)
T cd08222         160 DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLS------VVLRIVEGP-T--PSLPETYS  230 (260)
T ss_pred             ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHH------HHHHHHcCC-C--CCCcchhc
Confidence            11  1123344677887777777888999999999999999999886432111      001111111 0  01112234


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .++.+++.+||..||++||+++|++++
T Consensus       231 ~~~~~li~~~l~~~p~~Rp~~~~il~~  257 (260)
T cd08222         231 RQLNSIMQSMLNKDPSLRPSAAEILRN  257 (260)
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHhhC
Confidence            567889999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.5e-31  Score=283.22  Aligned_cols=234  Identities=19%  Similarity=0.159  Sum_probs=184.4

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccchhHHHHHHHHHHhhc-cCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGATRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ....+|.|+|++|-++. .++++..|||++...   .....+|+.++.+ -+||||+++++.|.+..+.|+|||++.+|-
T Consensus       326 ~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~---~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~e  402 (612)
T KOG0603|consen  326 FREELGEGSFSAVKYCESSPTDQEPAVKIISKR---ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGE  402 (612)
T ss_pred             cccccCCCCccceeeeeccccccchhheecccc---ccccccccchhhhhcCCCcceeecceecCCceeeeeehhccccH
Confidence            56669999999998887 478999999999754   3344566655554 469999999999999999999999999999


Q ss_pred             hHHHhhCCCCH-HHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee-CCCCCeeEccccccccccccCCCCcccccc
Q 002875          690 LSEKIRTKRDW-AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF-DENMEPHLAEFGFKYLTQLADGSFPAKIAW  767 (872)
Q Consensus       690 L~~~l~~~~~~-~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill-~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~  767 (872)
                      +.+.+...... .++..|+.+|+.|+.|||++   +|||||+||+|||+ ++.+.++|+|||.++..... ...++-+..
T Consensus       403 ll~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~-~~tp~~t~~  478 (612)
T KOG0603|consen  403 LLRRIRSKPEFCSEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS-CDTPALTLQ  478 (612)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhhCchh-hcccchhhc
Confidence            99888765433 45567999999999999998   99999999999999 58899999999999865544 112233445


Q ss_pred             cCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcc
Q 002875          768 TESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCT  847 (872)
Q Consensus       768 ~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  847 (872)
                      |.+||+.....++..+|+||+||++|||+||+.|+.....-  ..    +...+..     .+.....+....+++..||
T Consensus       479 y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~--~e----i~~~i~~-----~~~s~~vS~~AKdLl~~LL  547 (612)
T KOG0603|consen  479 YVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG--IE----IHTRIQM-----PKFSECVSDEAKDLLQQLL  547 (612)
T ss_pred             ccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch--HH----HHHhhcC-----CccccccCHHHHHHHHHhc
Confidence            78889998889999999999999999999999998754322  01    1111111     1111334566789999999


Q ss_pred             cCCCCCCCCHHHHHHH
Q 002875          848 RSTPSDRPSMEEALKL  863 (872)
Q Consensus       848 ~~dp~~Rpt~~~v~~~  863 (872)
                      +.||.+||+|.++..+
T Consensus       548 ~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  548 QVDPALRLGADEIGAH  563 (612)
T ss_pred             cCChhhCcChhhhccC
Confidence            9999999999998754

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=3.6e-31  Score=288.78  Aligned_cols=253  Identities=22%  Similarity=0.277  Sum_probs=186.7

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCe--
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ--  677 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~--  677 (872)
                      +.+.|.  ....+|+|++|.||+|.. .+|+.||||++...   ....+.+.+|+.++++++||||+++++++...+.  
T Consensus        13 ~~~~y~--~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07851          13 VPDRYQ--NLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLE   90 (343)
T ss_pred             ccCceE--EEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccc
Confidence            334455  788999999999999987 46889999998642   2234556789999999999999999998876554  


Q ss_pred             ----eEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          678 ----AYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       678 ----~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                          .++|+||+ +++|.+++.. ..++.+...++.|+++|++|||+.   +|+||||||+||++++++.+||+|||++.
T Consensus        91 ~~~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg~~~  166 (343)
T cd07851          91 DFQDVYLVTHLM-GADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFGLAR  166 (343)
T ss_pred             ccccEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEccccccc
Confidence                89999999 5699999876 458889999999999999999998   99999999999999999999999999987


Q ss_pred             cccccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-ccccc------------
Q 002875          753 LTQLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DGLLG------------  818 (872)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~~~~------------  818 (872)
                      ....... ...+...|.+||.... ..++.++||||+||++|||+||+.||........... .....            
T Consensus       167 ~~~~~~~-~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  245 (343)
T cd07851         167 HTDDEMT-GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISS  245 (343)
T ss_pred             ccccccc-CCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccc
Confidence            5433211 1223445677776643 4677889999999999999999998864432110000 00000            


Q ss_pred             ----ccccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 ----EMYNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ----~~~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                          ......+.......    ......+.+++.+|++.||++|||++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         246 ESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             hhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence                00000000000001    1124568899999999999999999999864

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.97  E-value=4.4e-31  Score=288.00  Aligned_cols=248  Identities=20%  Similarity=0.252  Sum_probs=181.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecC--------------
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--------------  675 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--------------  675 (872)
                      ..+.||.|+||.||+|.. .+|+.||+|++.... ...+.+.+|++++++++||||+++++++...              
T Consensus         9 ~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~   88 (342)
T cd07854           9 DLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTEL   88 (342)
T ss_pred             EEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccccccc
Confidence            788999999999999986 578999999986543 3456678899999999999999999876543              


Q ss_pred             CeeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-CCCCeeEcccccccc
Q 002875          676 HQAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHLAEFGFKYL  753 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-~~~~~ki~dfg~~~~  753 (872)
                      ...|+||||++ ++|.+++.. ..++.....++.|+++|++|||+.   +|+||||||+||+++ +++.+|++|||.++.
T Consensus        89 ~~~~lv~e~~~-~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~kl~dfg~~~~  164 (342)
T cd07854          89 NSVYIVQEYME-TDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVLKIGDFGLARI  164 (342)
T ss_pred             ceEEEEeeccc-ccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceEEECCccccee
Confidence            35799999997 599888865 467888899999999999999998   999999999999998 456789999999865


Q ss_pred             ccccCC-----CCcccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-------c------c
Q 002875          754 TQLADG-----SFPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-------I------D  814 (872)
Q Consensus       754 ~~~~~~-----~~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-------~------~  814 (872)
                      ......     ....+..+|.+||... ...++.++|||||||++|||++|+.||..........       .      .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T cd07854         165 VDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRN  244 (342)
T ss_pred             cCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhh
Confidence            422111     1112344567778653 3457788999999999999999999996443211000       0      0


Q ss_pred             cc---cccccc-ccccCCCC---chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          815 GL---LGEMYN-ENEVGSSS---SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       815 ~~---~~~~~~-~~~~~~~~---~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..   ...... .......+   .......++.+++.+|++.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         245 ELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             hhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCC
Confidence            00   000000 00000000   001223567899999999999999999999853

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.97  E-value=7.9e-31  Score=278.34  Aligned_cols=239  Identities=19%  Similarity=0.194  Sum_probs=187.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|.|++|.||+|+. .+|+.||+|.+...    ....+.+.+|++++++++ ||||+++++++.+++..++||||+
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd05581           5 FGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYA   84 (280)
T ss_pred             EeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCC
Confidence            678899999999999986 47999999998652    223466788899999998 999999999999999999999999


Q ss_pred             CCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----
Q 002875          686 PNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----  759 (872)
Q Consensus       686 ~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----  759 (872)
                      ++|+|.+++...  .++.....++.|++.|++|||+.   +++|+||||+||+++.++.++++|||++........    
T Consensus        85 ~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~  161 (280)
T cd05581          85 PNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESN  161 (280)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccccccCCccccccC
Confidence            999999999764  58889999999999999999998   999999999999999999999999999865432111    


Q ss_pred             ------------------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccc
Q 002875          760 ------------------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMY  821 (872)
Q Consensus       760 ------------------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~  821 (872)
                                        ....+...+.+||.......+.++||||+||++||++||+.|+.......      ......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~------~~~~~~  235 (280)
T cd05581         162 KGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYL------TFQKIL  235 (280)
T ss_pred             CCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHH------HHHHHH
Confidence                              00112334567787766678888999999999999999999987443111      011111


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCH----HHHHHH
Q 002875          822 NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM----EEALKL  863 (872)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~----~~v~~~  863 (872)
                      ... ...+.   .....+.+++.+||+.||.+||++    +|++++
T Consensus       236 ~~~-~~~~~---~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~  277 (280)
T cd05581         236 KLE-YSFPP---NFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAH  277 (280)
T ss_pred             hcC-CCCCC---ccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhcC
Confidence            111 00111   123467899999999999999999    777654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=8.1e-31  Score=282.86  Aligned_cols=252  Identities=20%  Similarity=0.229  Sum_probs=181.6

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecC------
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNR------  675 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------  675 (872)
                      +.|.  ..+.+|+|+||.||+|+. .+|+.||||++.....   ....+.+|++++++++||||+++++++.+.      
T Consensus         8 ~~y~--~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   85 (311)
T cd07866           8 RDYE--ILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKR   85 (311)
T ss_pred             ccEE--EEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccc
Confidence            3455  788999999999999985 5789999999865322   234567899999999999999999987543      


Q ss_pred             --CeeEEEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          676 --HQAYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       676 --~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                        ...++||||+.+ ++.+.+..   ..++.+...++.|+++||+|||+.   +|+||||||+||++++++.+|++|||+
T Consensus        86 ~~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~  161 (311)
T cd07866          86 KRGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGL  161 (311)
T ss_pred             cCceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcCcc
Confidence              346999999975 77777654   457888999999999999999999   999999999999999999999999999


Q ss_pred             cccccccCCCC-------------cccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC------
Q 002875          751 KYLTQLADGSF-------------PAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN------  810 (872)
Q Consensus       751 ~~~~~~~~~~~-------------~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~------  810 (872)
                      ++.........             ..+...|.+||...+ ..++.++|||||||++|||+||+.||.+......      
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~  241 (311)
T cd07866         162 ARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFK  241 (311)
T ss_pred             chhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            86543211100             012344677786543 4578889999999999999999988764332110      


Q ss_pred             ---------cccccccccccc-ccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          811 ---------KPIDGLLGEMYN-ENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       811 ---------~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                               +..........+ ..........    ......+.+++.+|++.||++|||+.|++.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~  308 (311)
T cd07866         242 LCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEH  308 (311)
T ss_pred             HhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcC
Confidence                     000000000000 0000000001    1122567899999999999999999998754

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.97  E-value=1.5e-30  Score=268.38  Aligned_cols=217  Identities=17%  Similarity=0.081  Sum_probs=166.9

Q ss_pred             CCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChHHHhhC-
Q 002875          619 PQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT-  696 (872)
Q Consensus       619 g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~-  696 (872)
                      |.+|.||++.. .+|+.||+|++....    ...+|...+....||||+++++++.+.+..++||||+++|+|.+++.. 
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~   79 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKF   79 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHh
Confidence            88999999986 678999999997542    233344455556799999999999999999999999999999999865 


Q ss_pred             -CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccccccCchhhhc
Q 002875          697 -KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYN  775 (872)
Q Consensus       697 -~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~  775 (872)
                       ..++.....++.|+++||+|+|..   +|+||||||+||+++.++.++++|||.+......... ......|.+||...
T Consensus        80 ~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~y~aPE~~~  155 (237)
T cd05576          80 LNIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDG-EAVENMYCAPEVGG  155 (237)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhcccccccc-CCcCccccCCcccC
Confidence             357888899999999999999998   9999999999999999999999999987544322111 11223466778777


Q ss_pred             ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCC
Q 002875          776 AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP  855 (872)
Q Consensus       776 ~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp  855 (872)
                      ...++.++||||+||++|||+||..|+........        ....   ...++   .....+.+++.+|++.||++||
T Consensus       156 ~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~~--------~~~~---~~~~~---~~~~~~~~li~~~l~~dp~~R~  221 (237)
T cd05576         156 ISEETEACDWWSLGAILFELLTGKTLVECHPSGIN--------THTT---LNIPE---WVSEEARSLLQQLLQFNPTERL  221 (237)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCcchhhcCchhcc--------cccc---cCCcc---cCCHHHHHHHHHHccCCHHHhc
Confidence            67778899999999999999999877653211000        0000   00011   1234577889999999999999


Q ss_pred             CH
Q 002875          856 SM  857 (872)
Q Consensus       856 t~  857 (872)
                      ++
T Consensus       222 ~~  223 (237)
T cd05576         222 GA  223 (237)
T ss_pred             CC
Confidence            97

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.1e-30  Score=270.07  Aligned_cols=234  Identities=15%  Similarity=0.127  Sum_probs=183.4

Q ss_pred             ccCCCCCceeeeecC-CCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          616 AARPQSAAGCKAVLP-TGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       616 ~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      +|+|+||.||+++.. +|+.||+|.+.....    ..+.+.+|+.++++++||||+++++.+..++..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            689999999999864 689999999875432    355788899999999999999999999999999999999999999


Q ss_pred             HHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCccccc
Q 002875          691 SEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPAKIA  766 (872)
Q Consensus       691 ~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~~~~  766 (872)
                      .+++...  .++.....++.|+++|+.|+|..   +++|+||||+||+++.++.++++|||.+.......  .....+..
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~  157 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTP  157 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCc
Confidence            9999764  57888899999999999999998   99999999999999999999999999986543321  11222334


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .+.+||.......+.++|+||||+++||+++|+.||.......      ......... ...+..   ....+.+++.+|
T Consensus       158 ~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~------~~~~~~~~~-~~~~~~---~~~~l~~~i~~~  227 (250)
T cd05123         158 EYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKE------IYEKILKDP-LRFPEF---LSPEARDLISGL  227 (250)
T ss_pred             cccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHhcCC-CCCCCC---CCHHHHHHHHHH
Confidence            4677787777677888999999999999999999986433210      011111111 111111   134577899999


Q ss_pred             ccCCCCCCCCH---HHHHH
Q 002875          847 TRSTPSDRPSM---EEALK  862 (872)
Q Consensus       847 l~~dp~~Rpt~---~~v~~  862 (872)
                      |..||++||++   +++.+
T Consensus       228 l~~~p~~R~~~~~~~~l~~  246 (250)
T cd05123         228 LQKDPTKRLGSGGAEEIKA  246 (250)
T ss_pred             hcCCHhhCCCcccHHHHHh
Confidence            99999999999   55543

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.9e-30  Score=283.30  Aligned_cols=246  Identities=18%  Similarity=0.204  Sum_probs=194.8

Q ss_pred             hhcCcchhhhccCCCCCceeeee-cCCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEec-----CCee
Q 002875          606 RSFNSTECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYN-----RHQA  678 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~-----~~~~  678 (872)
                      +.|.  +.+.+|.|.+|+|||++ .++|+.+|||++.......++...|.++++.. .|||++.++|++..     +++.
T Consensus        19 d~~e--i~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqL   96 (953)
T KOG0587|consen   19 DIFE--IIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQL   96 (953)
T ss_pred             CccE--EEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeE
Confidence            3455  88999999999999998 57899999999988777777888888888865 59999999999863     5789


Q ss_pred             EEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      +||||||.+||.-|.+++    ++.|.....|++.++.|+++||..   .++|||||-.|||++.++.+|+.|||++...
T Consensus        97 WLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~VKLvDFGvSaQl  173 (953)
T KOG0587|consen   97 WLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  173 (953)
T ss_pred             EEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcEEEeeeeeeeee
Confidence            999999999999999876    456777888999999999999999   9999999999999999999999999998654


Q ss_pred             cccCC--CCcccccccCchhhhccc-----CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          755 QLADG--SFPAKIAWTESGEFYNAM-----KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       755 ~~~~~--~~~~~~~~~~~~e~~~~~-----~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      .....  .+..+++++++||++...     .|+..+|+||+|++..||.-|.+|+.+-....     .++.-..++  ++
T Consensus       174 dsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmr-----aLF~IpRNP--PP  246 (953)
T KOG0587|consen  174 DSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMR-----ALFLIPRNP--PP  246 (953)
T ss_pred             ecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhh-----hhccCCCCC--Cc
Confidence            33222  233466777778877543     35667899999999999999988875432211     111111111  21


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .........+++.+++..|+.+|-++||++.+++++
T Consensus       247 kLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~h  282 (953)
T KOG0587|consen  247 KLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLKH  282 (953)
T ss_pred             cccchhhHHHHHHHHHHHHHhhccccCcchhhhccC
Confidence            122345667789999999999999999999998764

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.97  E-value=4.5e-30  Score=279.09  Aligned_cols=248  Identities=22%  Similarity=0.242  Sum_probs=178.2

Q ss_pred             hhhhccCCCCCceeeeecC-C--CcEEEEEEeecc---chhHHHHHHHHHHhhcc-CCCCceeEEEEEecC----CeeEE
Q 002875          612 ECEEAARPQSAAGCKAVLP-T--GITVSVKKIEWG---ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR----HQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~--g~~vavK~~~~~---~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~----~~~~l  680 (872)
                      ..+.+|+|+||.||++... +  |..||||++...   ....+.+.+|+++++++ +|||||++++++...    ...|+
T Consensus         4 ~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~   83 (332)
T cd07857           4 LIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYL   83 (332)
T ss_pred             EEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEE
Confidence            6778999999999999863 4  789999998642   12245667889999998 599999999976432    45789


Q ss_pred             EEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          681 LYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      +|||+. ++|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++......
T Consensus        84 ~~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~  159 (332)
T cd07857          84 YEELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLARGFSENP  159 (332)
T ss_pred             EEeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCceeccccc
Confidence            999996 699998864  357888899999999999999998   99999999999999999999999999986543211


Q ss_pred             C------CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---------ccccccccc--
Q 002875          759 G------SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---------PIDGLLGEM--  820 (872)
Q Consensus       759 ~------~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---------~~~~~~~~~--  820 (872)
                      .      ....+...|.+||...+ ..++.++||||+||++|||++|..||.........         +........  
T Consensus       160 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (332)
T cd07857         160 GENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGS  239 (332)
T ss_pred             ccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhh
Confidence            1      11123344677786543 45788899999999999999999888643311000         000000000  


Q ss_pred             ----------ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 ----------YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ----------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                ..................+.+++.+|++.||++|||++|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         240 PKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             hhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                      0000000000001123467899999999999999999998743

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=8.9e-31  Score=264.64  Aligned_cols=245  Identities=17%  Similarity=0.159  Sum_probs=185.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---h-----hHHHHHHHHHHhhccCCCCceeEEEEEe-cCCeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---T-----RIKIVSEFITRIGTVRHKNLIRLLGFCY-NRHQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~-----~~~~~~~e~~~l~~l~H~niv~l~~~~~-~~~~~~lv  681 (872)
                      ...++|+|+|++||||.. ...+-||||+-...+   .     ..+-..+|..+-+.+.||.||++|+|+. +.+.+|-|
T Consensus       467 lLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTV  546 (775)
T KOG1151|consen  467 LLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTV  546 (775)
T ss_pred             HHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceee
Confidence            678899999999999985 556789999853221   1     1344567889999999999999999996 56789999


Q ss_pred             EcccCCCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC---CCCCeeEccccccccccc
Q 002875          682 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD---ENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~---~~~~~ki~dfg~~~~~~~  756 (872)
                      +|||+|.||+-+++...  +..+...|+.||+.||.||... .|+|||-|+||.|||+-   ..|.+||+|||+++.+..
T Consensus       547 LEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdd  625 (775)
T KOG1151|consen  547 LEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDD  625 (775)
T ss_pred             eeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhhccC
Confidence            99999999999998753  5667788999999999999875 78999999999999994   458899999999998764


Q ss_pred             cCC---------CCcccccccCchhhhc----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccc
Q 002875          757 ADG---------SFPAKIAWTESGEFYN----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE  823 (872)
Q Consensus       757 ~~~---------~~~~~~~~~~~~e~~~----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  823 (872)
                      ...         +..+++.||.|||.+.    ..+++.++||||.|||+|..+.|+.||......++....   ..++..
T Consensus       626 dSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqe---NTIlkA  702 (775)
T KOG1151|consen  626 DSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQE---NTILKA  702 (775)
T ss_pred             CccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhh---hchhcc
Confidence            331         2234788999999764    346788999999999999999999999865443322111   111111


Q ss_pred             cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHH
Q 002875          824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL  861 (872)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~  861 (872)
                      .++. .+..+....+..+++.+|++..-++|...-++.
T Consensus       703 tEVq-FP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  703 TEVQ-FPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             eecc-CCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHc
Confidence            1111 111122234566788899999888888776654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.5e-33  Score=292.13  Aligned_cols=367  Identities=24%  Similarity=0.385  Sum_probs=322.4

Q ss_pred             CCCCcEEECCCCCCc-ccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           17 FNELVDLNLSHNSFS-GQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      ++.++-.|+++|.++ +..|..+..|++++.|-|...++. .+|+.++.|.+|+.|.+++|++. .+-..++.|+.||.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            667888999999999 688999999999999999999887 68999999999999999999987 566788999999999


Q ss_pred             EccCCcccc-cCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCC
Q 002875           96 NLAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL  174 (872)
Q Consensus        96 ~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l  174 (872)
                      ++..|++.. -+|..+-.|..|.+|||++|+++ ..|..+..-+++-.|++++|.+.......+-+++.|-.||||+|++
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            999998843 35777889999999999999995 6899999999999999999999876556678999999999999999


Q ss_pred             cccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCc-CcCCccccCCCCCCEEEcccccCCCCCCcc
Q 002875          175 SGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS-GPIPESFADLKNLRLLSLMYNEMSGTVPES  253 (872)
Q Consensus       175 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  253 (872)
                      . .+|+.+..|..|++|+|++|.+....-..+..+++|+.|.+++.+-+ .-+|.++.++.||+.+|+|.|.+. .+|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            8 67888999999999999999886433334556778888888876543 347889999999999999999998 78999


Q ss_pred             ccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCC-CCCCCCCCCCCC
Q 002875          254 LVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTG-SLSPSLSNCSSL  332 (872)
Q Consensus       254 l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~-~~~~~~~~l~~L  332 (872)
                      +..+++|+.|+|++|+++ .+....+.+.+|+.|++|.|+++ .+|+.+|.++.|+.|...+|++.- -+|..++.+.+|
T Consensus       241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence            999999999999999998 45556667788999999999998 789999999999999999998754 357778999999


Q ss_pred             cEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCC
Q 002875          333 VRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLG  392 (872)
Q Consensus       333 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~  392 (872)
                      +.+..++|.+. .+|..++.++.|+.|.|+.|++- .+|+.+.-++.|+.||+.+||.+.
T Consensus       319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence            99999999987 78999999999999999999987 689999999999999999998774

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=8.2e-30  Score=298.97  Aligned_cols=138  Identities=19%  Similarity=0.225  Sum_probs=124.3

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|... +|+.||||++....    ...+.+.+|+.+++.++|||||++++++...+..|+||||++
T Consensus         8 i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~   87 (669)
T cd05610           8 IVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLI   87 (669)
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCC
Confidence            7889999999999999964 78999999997532    224667889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      +|+|.+++..  ..++...+.|+.||+.||+|||..   +|+||||||+|||++.++.+||+|||+++
T Consensus        88 g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          88 GGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            9999999875  346778899999999999999998   99999999999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-30  Score=253.50  Aligned_cols=242  Identities=13%  Similarity=0.074  Sum_probs=186.3

Q ss_pred             hhcCcchhhhccCCCCCceeeee-cCCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ..+++|+|.||+|..++ ..+|+.+|+|++++..    .+..--..|-+.++..+||.+..+.-.+++.+..|+
T Consensus       168 ~dFd--fLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCF  245 (516)
T KOG0690|consen  168 EDFD--FLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCF  245 (516)
T ss_pred             chhh--HHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEE
Confidence            3466  88999999999998876 5789999999998642    223333556788999999999999989999999999


Q ss_pred             EEcccCCCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc--c
Q 002875          681 LYDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ--L  756 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~--~  756 (872)
                      ||||+.||.|+-++.+..  +..+...+-..|..||.|||+.   +||.||+|.+|.++|++|++||+|||+++.--  .
T Consensus       246 VMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g  322 (516)
T KOG0690|consen  246 VMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYG  322 (516)
T ss_pred             EEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchhccccc
Confidence            999999999999998754  4445566788999999999999   99999999999999999999999999987532  1


Q ss_pred             cCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          757 ADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       757 ~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      .....-++++.|.+||+.....|+..+|.|.+|||||||+.|+.||+..+...-. ....+.++..+.         ...
T Consensus       323 ~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLF-eLIl~ed~kFPr---------~ls  392 (516)
T KOG0690|consen  323 DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLF-ELILMEDLKFPR---------TLS  392 (516)
T ss_pred             ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHH-HHHHhhhccCCc---------cCC
Confidence            2223345777888999999989999999999999999999999999865432110 001112221111         122


Q ss_pred             HHHHHHHHHcccCCCCCCCC-----HHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPS-----MEEALK  862 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt-----~~~v~~  862 (872)
                      ++...++.-.+.+||.+|-.     +.||.+
T Consensus       393 ~eAktLLsGLL~kdP~kRLGgGpdDakEi~~  423 (516)
T KOG0690|consen  393 PEAKTLLSGLLKKDPKKRLGGGPDDAKEIMR  423 (516)
T ss_pred             HHHHHHHHHHhhcChHhhcCCCchhHHHHHh
Confidence            34556666678899999952     555554

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2e-30  Score=291.01  Aligned_cols=194  Identities=18%  Similarity=0.110  Sum_probs=164.5

Q ss_pred             cCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          608 FNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      |.  +..+||+|+||.|..++. .+++.||+|++++.    ......|.+|-.+|.--+.+-||+++-+|+++++.|+||
T Consensus        77 fe--ilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVM  154 (1317)
T KOG0612|consen   77 FE--ILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVM  154 (1317)
T ss_pred             hH--HHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEE
Confidence            55  999999999999998875 78999999999763    335678999999999888999999999999999999999


Q ss_pred             cccCCCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--
Q 002875          683 DYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       683 ey~~~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--  758 (872)
                      |||+||||...+.+..  +....+.++..|..||+-+|+.   |.|||||||.|||||.+|++|++|||-+-.+....  
T Consensus       155 dY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V  231 (1317)
T KOG0612|consen  155 DYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTV  231 (1317)
T ss_pred             ecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEeeccchhHHhcCCCCcE
Confidence            9999999999997743  4444566888999999999999   99999999999999999999999999774443222  


Q ss_pred             -CCCcccccccCchhhhc----c-cCCcccccchhHHHHHHHHHcCCCCCCCCC
Q 002875          759 -GSFPAKIAWTESGEFYN----A-MKEEMYMDVYGFGEIILEILTNGRLTNAGS  806 (872)
Q Consensus       759 -~~~~~~~~~~~~~e~~~----~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~  806 (872)
                       .....|++-|-+||+..    + ..|+..+|.||+||++|||+.|..||+.+.
T Consensus       232 ~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYads  285 (1317)
T KOG0612|consen  232 RSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADS  285 (1317)
T ss_pred             EeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHH
Confidence             12334777788888763    2 468888999999999999999999998543

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.1e-29  Score=235.88  Aligned_cols=248  Identities=13%  Similarity=0.177  Sum_probs=184.7

Q ss_pred             cchhhhccCCCCCceeeee-cCCCcEEEEEEeeccchhHHHHHHHHHHhhccC-CCCceeEEEEEecC--CeeEEEEccc
Q 002875          610 STECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGATRIKIVSEFITRIGTVR-HKNLIRLLGFCYNR--HQAYLLYDYL  685 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~--~~~~lv~ey~  685 (872)
                      |+..+++|+|.+++||.|. ..+.+.++||.+++  ...+.+.+||.++..++ |||||++++...++  ..+.||+||.
T Consensus        40 Yeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP--VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v  117 (338)
T KOG0668|consen   40 YEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP--VKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYV  117 (338)
T ss_pred             HHHHHHHcCccHhhHhcccccCCCceEEEeeech--HHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhh
Confidence            3488999999999999998 46778899999974  44567889999999998 99999999998875  4678999999


Q ss_pred             CCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEccccccccccccCCCCcc-
Q 002875          686 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQLADGSFPA-  763 (872)
Q Consensus       686 ~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~~~~~~~~~~-  763 (872)
                      .+-+....- ..+.......++.++++||.|+|+.   ||+|||+||.|++||.. -..+++|+|+|.+.......... 
T Consensus       118 ~n~Dfk~ly-~tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRV  193 (338)
T KOG0668|consen  118 NNTDFKQLY-PTLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRV  193 (338)
T ss_pred             ccccHHHHh-hhhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHhhcCCCceeeeee
Confidence            997765543 3445566778899999999999999   99999999999999954 56999999999877654332221 


Q ss_pred             cccccCchhh-hcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc----------------------cccccc
Q 002875          764 KIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID----------------------GLLGEM  820 (872)
Q Consensus       764 ~~~~~~~~e~-~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~----------------------~~~~~~  820 (872)
                      ...|+-.||. .....+....|+|||||++.+|+..+.||+.+.+..+....                      ..+..+
T Consensus       194 ASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i  273 (338)
T KOG0668|consen  194 ASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDI  273 (338)
T ss_pred             ehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhH
Confidence            3334444554 45667788889999999999999999999977665432211                      000110


Q ss_pred             ccccccC-----CCCchH-HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 YNENEVG-----SSSSLQ-DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ~~~~~~~-----~~~~~~-~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .......     ..+... -..+++++++.+.+..|-.+|||++|++++
T Consensus       274 ~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  274 LGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             hhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence            0000000     000001 113578899999999999999999998764

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.96  E-value=6e-30  Score=256.39  Aligned_cols=252  Identities=14%  Similarity=0.108  Sum_probs=190.5

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCC--C----CceeEEEEEecCCe
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRH--K----NLIRLLGFCYNRHQ  677 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H--~----niv~l~~~~~~~~~  677 (872)
                      ...|.  +...+|+|+||+|.++.. .++..||||+++.-....+...-|++.++++.+  |    -+|.+.+++.-.++
T Consensus        88 ~~Ry~--i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   88 TNRYE--IVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             cccee--hhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            34455  899999999999999985 457899999998655556667778999999843  2    37888899999999


Q ss_pred             eEEEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC--------------
Q 002875          678 AYLLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE--------------  739 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~--------------  739 (872)
                      .|||+|.+ |-|+.+++.+.    .+......++.|++++++|||+.   +++|-|+||+|||+-+              
T Consensus       166 iCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k~~~~  241 (415)
T KOG0671|consen  166 ICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPKKKVC  241 (415)
T ss_pred             eEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccCCccc
Confidence            99999988 45999999873    36678889999999999999999   9999999999999821              


Q ss_pred             ------CCCeeEccccccccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc
Q 002875          740 ------NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI  813 (872)
Q Consensus       740 ------~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~  813 (872)
                            +..+||+|||-|....... +....+.-|.+||++.+..++..+||||+|||++|+.||...|+..++.+...+
T Consensus       242 ~~r~~ks~~I~vIDFGsAtf~~e~h-s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaM  320 (415)
T KOG0671|consen  242 FIRPLKSTAIKVIDFGSATFDHEHH-STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAM  320 (415)
T ss_pred             eeccCCCcceEEEecCCcceeccCc-ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHH
Confidence                  2358999999987654332 333355568899999999999999999999999999999999885543221111


Q ss_pred             cccccccccc-------------------------c--------ccC---CCCchHHHHHHHHHHHHHcccCCCCCCCCH
Q 002875          814 DGLLGEMYNE-------------------------N--------EVG---SSSSLQDEIKLVLDVALLCTRSTPSDRPSM  857 (872)
Q Consensus       814 ~~~~~~~~~~-------------------------~--------~~~---~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~  857 (872)
                      ++.+.+..+.                         .        ..+   .......+..++.+++.+++..||++|+|+
T Consensus       321 MerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl  400 (415)
T KOG0671|consen  321 MERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITL  400 (415)
T ss_pred             HHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccH
Confidence            1111000000                         0        000   000112344568999999999999999999


Q ss_pred             HHHHHH
Q 002875          858 EEALKL  863 (872)
Q Consensus       858 ~~v~~~  863 (872)
                      .|++.+
T Consensus       401 ~EAL~H  406 (415)
T KOG0671|consen  401 REALSH  406 (415)
T ss_pred             HHHhcC
Confidence            999865

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.96  E-value=3.6e-29  Score=229.20  Aligned_cols=191  Identities=19%  Similarity=0.178  Sum_probs=151.3

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeecc--chhHHHHHHHHHHh-hccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWG--ATRIKIVSEFITRI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~--~~~~~~~~~e~~~l-~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|++|.|-|-. ..+|+..|||++...  .+..+...+|+.+. +....|.+|.++|.+......++.||.|.-
T Consensus        50 ~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~t  129 (282)
T KOG0984|consen   50 GIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMDT  129 (282)
T ss_pred             hhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhhh
Confidence            56789999999998776 478999999999753  34455666777664 456789999999999999999999999975


Q ss_pred             CChHHHhhC----CC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          688 GNLSEKIRT----KR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       688 g~L~~~l~~----~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                       ||+.+-++    ..  +..-.-+|+..+..||.|||++.  .|+|||+||+||||+.+|.+|++|||++......-...
T Consensus       130 -Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt  206 (282)
T KOG0984|consen  130 -SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKT  206 (282)
T ss_pred             -hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEcccccceeehhhhHHH
Confidence             88765443    22  44445689999999999999875  89999999999999999999999999987654332222


Q ss_pred             -cccccccCchhhhc----ccCCcccccchhHHHHHHHHHcCCCCCCCC
Q 002875          762 -PAKIAWTESGEFYN----AMKEEMYMDVYGFGEIILEILTNGRLTNAG  805 (872)
Q Consensus       762 -~~~~~~~~~~e~~~----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~  805 (872)
                       .++...|++||..+    ...|+.++||||+|+.+.||++++.|+...
T Consensus       207 ~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  207 MDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESW  255 (282)
T ss_pred             HhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccccc
Confidence             22334466666553    336889999999999999999999988643

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.96  E-value=1.9e-28  Score=253.94  Aligned_cols=234  Identities=21%  Similarity=0.203  Sum_probs=182.2

Q ss_pred             CCCceeeeecC-CCcEEEEEEeeccchh--HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChHHHhhC
Q 002875          620 QSAAGCKAVLP-TGITVSVKKIEWGATR--IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT  696 (872)
Q Consensus       620 ~~~~v~~~~~~-~g~~vavK~~~~~~~~--~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~  696 (872)
                      +||.||+|+.. +|+.||+|++......  .+.+.+|++.+++++|+||+++++++......++||||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999975 5899999999754332  57889999999999999999999999999999999999999999999876


Q ss_pred             C--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-CCCcccccccCchhh
Q 002875          697 K--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-GSFPAKIAWTESGEF  773 (872)
Q Consensus       697 ~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-~~~~~~~~~~~~~e~  773 (872)
                      .  .++.+...++.++++|++|||..   +++|+||+|+||++++++.++++|||.+....... .....+...+.+||.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~  157 (244)
T smart00220       81 RGRLSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEV  157 (244)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHH
Confidence            4  47888899999999999999999   99999999999999999999999999987654321 111223344677887


Q ss_pred             hcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCC
Q 002875          774 YNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSD  853 (872)
Q Consensus       774 ~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~  853 (872)
                      ......+.++||||+|+++||+++|..|+.........      .+..................++.+++.+|+..+|++
T Consensus       158 ~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  231 (244)
T smart00220      158 LLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLEL------FKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEK  231 (244)
T ss_pred             HccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH------HHHHhccCCCCccccccCCHHHHHHHHHHccCCchh
Confidence            77677788999999999999999999888642211100      000000000001100003356788999999999999


Q ss_pred             CCCHHHHHH
Q 002875          854 RPSMEEALK  862 (872)
Q Consensus       854 Rpt~~~v~~  862 (872)
                      ||++.++++
T Consensus       232 Rp~~~~~~~  240 (244)
T smart00220      232 RLTAEEALQ  240 (244)
T ss_pred             ccCHHHHhh
Confidence            999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.96  E-value=8.4e-29  Score=282.72  Aligned_cols=245  Identities=15%  Similarity=0.076  Sum_probs=153.5

Q ss_pred             hhhhccCCCCCceeeeecC-C----CcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEE------EecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVLP-T----GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGF------CYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~----g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~------~~~~~~~~l  680 (872)
                      ..+.||+|+||.||+|+.. +    |..||||++..... .+....|  .+....+.+++.+...      +...++.++
T Consensus       136 l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~-~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  212 (566)
T PLN03225        136 LGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA-VEIWMNE--RVRRACPNSCADFVYGFLEPVSSKKEDEYWL  212 (566)
T ss_pred             EeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch-hHHHHHH--HHHhhchhhHHHHHHhhhcccccccCCceEE
Confidence            7889999999999999964 4    78999999864322 1111111  1222223333332221      245668999


Q ss_pred             EEcccCCCChHHHhhCCC-C---------------------HHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC
Q 002875          681 LYDYLPNGNLSEKIRTKR-D---------------------WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD  738 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~~-~---------------------~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~  738 (872)
                      ||||+++|+|.+++.... .                     ......++.|++.||+|||+.   +|+||||||+|||++
T Consensus       213 V~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRDLKP~NILl~  289 (566)
T PLN03225        213 VWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRDVKPQNIIFS  289 (566)
T ss_pred             EEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCcCCHHHEEEe
Confidence            999999999999886431 0                     112346899999999999998   999999999999998


Q ss_pred             C-CCCeeEccccccccccccCCC---CcccccccCchhhhcc----------------------cCCcccccchhHHHHH
Q 002875          739 E-NMEPHLAEFGFKYLTQLADGS---FPAKIAWTESGEFYNA----------------------MKEEMYMDVYGFGEII  792 (872)
Q Consensus       739 ~-~~~~ki~dfg~~~~~~~~~~~---~~~~~~~~~~~e~~~~----------------------~~~~~~~Dv~S~Gvil  792 (872)
                      . ++.+||+|||+++........   ...+...|++||.+..                      ..+..++|||||||++
T Consensus       290 ~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL  369 (566)
T PLN03225        290 EGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIF  369 (566)
T ss_pred             CCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHH
Confidence            5 578999999999754322111   1123344666664321                      1234456999999999


Q ss_pred             HHHHcCCCCCCCCCCCC-------CccccccccccccccccCC----CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHH
Q 002875          793 LEILTNGRLTNAGSSLQ-------NKPIDGLLGEMYNENEVGS----SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL  861 (872)
Q Consensus       793 ~el~tg~~p~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~  861 (872)
                      |||+++..+........       ...... ......+.....    .+..........+++.+|++.||++|||++|++
T Consensus       370 ~el~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L  448 (566)
T PLN03225        370 LQMAFPNLRSDSNLIQFNRQLKRNDYDLVA-WRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAAL  448 (566)
T ss_pred             HHHHhCcCCCchHHHHHHHHHHhcCCcHHH-HHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHHHh
Confidence            99999765433210000       000000 000000000000    000001122355899999999999999999998


Q ss_pred             HH
Q 002875          862 KL  863 (872)
Q Consensus       862 ~~  863 (872)
                      ++
T Consensus       449 ~H  450 (566)
T PLN03225        449 AH  450 (566)
T ss_pred             CC
Confidence            76

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.96  E-value=2e-28  Score=271.73  Aligned_cols=251  Identities=15%  Similarity=0.148  Sum_probs=166.5

Q ss_pred             hcCcchhhhccCCCCCceeeeec-----------------CCCcEEEEEEeeccchh-H--------------HHHHHHH
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-----------------PTGITVSVKKIEWGATR-I--------------KIVSEFI  654 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-----------------~~g~~vavK~~~~~~~~-~--------------~~~~~e~  654 (872)
                      .|.  ..++||+|+||.||+|..                 .+++.||||++...... .              +....|+
T Consensus       146 ~F~--i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        146 DFQ--LRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             Cce--EeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            355  889999999999999963                 34578999998653221 1              1223466


Q ss_pred             HHhhccCCCCc-----eeEEEEEec--------CCeeEEEEcccCCCChHHHhhCC------------------------
Q 002875          655 TRIGTVRHKNL-----IRLLGFCYN--------RHQAYLLYDYLPNGNLSEKIRTK------------------------  697 (872)
Q Consensus       655 ~~l~~l~H~ni-----v~l~~~~~~--------~~~~~lv~ey~~~g~L~~~l~~~------------------------  697 (872)
                      ..+.+++|.++     ++++++|..        .+..++||||+++|+|.++++..                        
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            67777777654     678888753        35689999999999999988631                        


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---cccccccCchh
Q 002875          698 --RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAKIAWTESGE  772 (872)
Q Consensus       698 --~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~~~~~~~~e  772 (872)
                        .+|.....++.|+++||+|+|+.   +|+||||||+||+++.++.+||+|||++..........   ....+.|.+||
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE  380 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPE  380 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChh
Confidence              13556778999999999999998   99999999999999999999999999986532211111   11123455555


Q ss_pred             hhccc----------------------CCcccccchhHHHHHHHHHcCCC-CCCCCCCCCCc--ccccccc--ccccccc
Q 002875          773 FYNAM----------------------KEEMYMDVYGFGEIILEILTNGR-LTNAGSSLQNK--PIDGLLG--EMYNENE  825 (872)
Q Consensus       773 ~~~~~----------------------~~~~~~Dv~S~Gvil~el~tg~~-p~~~~~~~~~~--~~~~~~~--~~~~~~~  825 (872)
                      .+...                      ....+.||||+||++|||++|.. |+.........  .......  ..+....
T Consensus       381 ~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~  460 (507)
T PLN03224        381 ELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQK  460 (507)
T ss_pred             hhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccC
Confidence            44221                      11234699999999999999875 44321110000  0000000  0001110


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCC---CCCCCHHHHHHH
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTP---SDRPSMEEALKL  863 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp---~~Rpt~~~v~~~  863 (872)
                      . ..+..........+++.+++..+|   .+|+|++|+++|
T Consensus       461 ~-~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        461 Y-DFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             C-CcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            1 111222334567788888888765   789999999876

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-29  Score=254.47  Aligned_cols=231  Identities=16%  Similarity=0.146  Sum_probs=177.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      +..++|+|+||+|-.|.. .+.+.+|||++++..    ...+--..|-++++-. +-|.+|+++.++++.+..|+||||+
T Consensus       353 Fl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEyv  432 (683)
T KOG0696|consen  353 FLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEYV  432 (683)
T ss_pred             eEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEEe
Confidence            889999999999999875 567789999997642    1222222334444432 5789999999999999999999999


Q ss_pred             CCCChHHHhhCCCCH--HHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc--cCCCC
Q 002875          686 PNGNLSEKIRTKRDW--AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL--ADGSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~~~~~--~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~--~~~~~  761 (872)
                      .||+|..++++.+.+  +....++.+||-||-|||++   +||.||+|..||++|.+|.+||+|||+++.--.  ..+..
T Consensus       433 nGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkT  509 (683)
T KOG0696|consen  433 NGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKT  509 (683)
T ss_pred             cCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeecccccccccCCcceee
Confidence            999999999875544  44567889999999999999   999999999999999999999999999875322  22233


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      -++++-|.+||++.+.+|+..+|.|||||++|||+.|++||.+.+..+      .+..+.+.. ..   .....+++.++
T Consensus       510 FCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~e------lF~aI~ehn-vs---yPKslSkEAv~  579 (683)
T KOG0696|consen  510 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE------LFQAIMEHN-VS---YPKSLSKEAVA  579 (683)
T ss_pred             ecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHH------HHHHHHHcc-Cc---CcccccHHHHH
Confidence            346777889999999999999999999999999999999998655321      222222221 11   12234456667


Q ss_pred             HHHHcccCCCCCCC
Q 002875          842 VALLCTRSTPSDRP  855 (872)
Q Consensus       842 l~~~cl~~dp~~Rp  855 (872)
                      +....+.+.|.+|-
T Consensus       580 ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  580 ICKGLLTKHPGKRL  593 (683)
T ss_pred             HHHHHhhcCCcccc
Confidence            77777788888885

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.95  E-value=3.6e-28  Score=242.79  Aligned_cols=244  Identities=18%  Similarity=0.208  Sum_probs=182.0

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecC-CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-~~~~lv~  682 (872)
                      ...++-+|.||.||+|..      .+.+.|-||.++...  .+...+..|--.+..+.|||+.++.+++.++ ..++.+|
T Consensus       288 l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y  367 (563)
T KOG1024|consen  288 LSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLY  367 (563)
T ss_pred             chhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEE
Confidence            456678999999999954      345577788887543  3466778888888888999999999998754 5788999


Q ss_pred             cccCCCChHHHhhCC----------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          683 DYLPNGNLSEKIRTK----------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       683 ey~~~g~L~~~l~~~----------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      .|+.-|+|..+++..          ..-.+...++.|++.|++|||++   +|||.||.++|++||+...+|++|-.+++
T Consensus       368 ~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvIdd~LqVkltDsaLSR  444 (563)
T KOG1024|consen  368 PATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVIDDQLQVKLTDSALSR  444 (563)
T ss_pred             eccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---CcccchhhhhcceehhheeEEeccchhcc
Confidence            999999999999721          12234567899999999999999   99999999999999999999999999987


Q ss_pred             cccccCCC-----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          753 LTQLADGS-----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       753 ~~~~~~~~-----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      ..-..+.+     ......|+ +.|......++..+|||||||++|||+|-+..++.+-++.     ++..-..+.....
T Consensus       445 DLFP~DYhcLGDnEnRPvkWM-slEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPf-----Em~~ylkdGyRla  518 (563)
T KOG1024|consen  445 DLFPGDYHCLGDNENRPVKWM-SLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPF-----EMEHYLKDGYRLA  518 (563)
T ss_pred             ccCcccccccCCCCCCccccc-CHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHH-----HHHHHHhccceec
Confidence            54332211     11234554 4566666778899999999999999999655444322111     1111222222232


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+-   ++++++..++..||..+|++||+++|++..|.++
T Consensus       519 QP~---NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF  555 (563)
T KOG1024|consen  519 QPF---NCPDELFTVMACCWALLPEERPSFSQLVICLSEF  555 (563)
T ss_pred             CCC---CCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence            222   2345678899999999999999999999988765

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.95  E-value=7.9e-29  Score=270.79  Aligned_cols=236  Identities=20%  Similarity=0.249  Sum_probs=175.2

Q ss_pred             hhhhccCCCCC-ceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSA-AGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~-~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|.|+.| .||+|+. +|++||||++-.  ...+.+.+||..++.- +|||||++++.-+++.+.||+.|.|. .+
T Consensus       513 ~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~--e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~-~s  588 (903)
T KOG1027|consen  513 PKEILGYGSNGTVVFRGVY-EGREVAVKRLLE--EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA-CS  588 (903)
T ss_pred             cHHHcccCCCCcEEEEEee-CCceehHHHHhh--HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh-hh
Confidence            66778899887 5689987 688999999852  2345678899998865 59999999999999999999999996 59


Q ss_pred             hHHHhhCC-CCH-----HHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---C--CCeeEccccccccccccC
Q 002875          690 LSEKIRTK-RDW-----AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---N--MEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       690 L~~~l~~~-~~~-----~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~--~~~ki~dfg~~~~~~~~~  758 (872)
                      |++++... .+.     -..+.+..|++.|+++||+.   +|||||+||+||||+.   +  .+++|+|||+++......
T Consensus       589 L~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~  665 (903)
T KOG1027|consen  589 LQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGK  665 (903)
T ss_pred             HHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEecccccccccCCCc
Confidence            99999873 111     22367889999999999998   9999999999999975   3  579999999998765433


Q ss_pred             CCC-----cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCC-CCCCCCCCCCccccccccccccccccCCCCch
Q 002875          759 GSF-----PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR-LTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       759 ~~~-----~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                      .+.     ..++..+.+||.......+..+||+|+|||+|..+||+. ||.+....+.-..    ...+.-...  .+ .
T Consensus       666 sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl----~~~~~L~~L--~~-~  738 (903)
T KOG1027|consen  666 SSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANIL----TGNYTLVHL--EP-L  738 (903)
T ss_pred             chhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhh----cCccceeee--cc-C
Confidence            222     224555667788877777778999999999999999865 5543221111000    000000001  01 1


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.  +..+++.+++..||..||++.+|+.|
T Consensus       739 ~d~--eA~dLI~~ml~~dP~~RPsa~~VL~H  767 (903)
T KOG1027|consen  739 PDC--EAKDLISRMLNPDPQLRPSATDVLNH  767 (903)
T ss_pred             chH--HHHHHHHHhcCCCcccCCCHHHHhCC
Confidence            111  67789999999999999999999864

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.95  E-value=1e-28  Score=241.74  Aligned_cols=247  Identities=21%  Similarity=0.210  Sum_probs=183.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC------CeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------HQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lv  681 (872)
                      ....+|.|+- .|.-+.. -.++.||+|++...   ....+...+|...+..+.|+||++++.++...      .+.|+|
T Consensus        21 nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v   99 (369)
T KOG0665|consen   21 NLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLV   99 (369)
T ss_pred             eecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHH
Confidence            4555666665 4444443 46889999998642   33466788899999999999999999998643      368999


Q ss_pred             EcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          682 YDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      ||||. ++|.+.+...++..+...|..|++.|++|+|+.   +|+|||+||+||++..+...||.|||+|+.....-..+
T Consensus       100 ~e~m~-~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~---~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mt  175 (369)
T KOG0665|consen  100 MELMD-ANLCQVILMELDHETISYILYQMLCGIKHLHSA---GIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMT  175 (369)
T ss_pred             HHhhh-hHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc---ceeecccCcccceecchhheeeccchhhcccCcccccC
Confidence            99996 499999998889999999999999999999999   99999999999999999999999999997543321111


Q ss_pred             c-ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc------------ccccc----cc---
Q 002875          762 P-AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID------------GLLGE----MY---  821 (872)
Q Consensus       762 ~-~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~------------~~~~~----~~---  821 (872)
                      + ..+.+|.+||+.-+..+...+||||.||++.||++|+..|.+.+....|-..            ..+..    ..   
T Consensus       176 pyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~  255 (369)
T KOG0665|consen  176 PYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENR  255 (369)
T ss_pred             chhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcC
Confidence            1 2456788999888878999999999999999999999988854432222110            00000    00   


Q ss_pred             -------------cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 -------------NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 -------------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                   +.......+..+-....+.+++.++|..||++|-+++++++|
T Consensus       256 ~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  256 PQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             hHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence                         000000000111223456789999999999999999999875

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.2e-27  Score=251.99  Aligned_cols=194  Identities=15%  Similarity=0.170  Sum_probs=158.4

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...-||-|+||+|+.+. .++...+|+|.+.+..    .+..-...|-.+|+.-..+-||+||-.|++++..|+||||++
T Consensus       633 kik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIP  712 (1034)
T KOG0608|consen  633 KIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIP  712 (1034)
T ss_pred             EEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccC
Confidence            56779999999999886 5777889999997543    234456778899999999999999999999999999999999


Q ss_pred             CCChHHHhhCCCCHHH--HHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc--------
Q 002875          687 NGNLSEKIRTKRDWAA--KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL--------  756 (872)
Q Consensus       687 ~g~L~~~l~~~~~~~~--~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~--------  756 (872)
                      |||+..+|-+-.-+++  ...++.+++.|+++.|..   |+|||||||.|||||.+|.+|++|||++.-++.        
T Consensus       713 GGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq  789 (1034)
T KOG0608|consen  713 GGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQ  789 (1034)
T ss_pred             CccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccCCceeeeeccccccceecccccccc
Confidence            9999998876544433  356778899999999999   999999999999999999999999998642110        


Q ss_pred             -cC-----------------------------------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCC
Q 002875          757 -AD-----------------------------------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR  800 (872)
Q Consensus       757 -~~-----------------------------------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~  800 (872)
                       ..                                   .+...++..|.+||++....++..+|.||.|||+|||+.|+.
T Consensus       790 ~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~  869 (1034)
T KOG0608|consen  790 EGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQP  869 (1034)
T ss_pred             CCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCC
Confidence             00                                   001124556778888888888889999999999999999999


Q ss_pred             CCCCCCCC
Q 002875          801 LTNAGSSL  808 (872)
Q Consensus       801 p~~~~~~~  808 (872)
                      ||-+....
T Consensus       870 pf~~~tp~  877 (1034)
T KOG0608|consen  870 PFLADTPG  877 (1034)
T ss_pred             CccCCCCC
Confidence            99865543

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.94  E-value=4.2e-26  Score=230.78  Aligned_cols=205  Identities=23%  Similarity=0.318  Sum_probs=174.5

Q ss_pred             ccCCCCCceeeeecCC-CcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChHH
Q 002875          616 AARPQSAAGCKAVLPT-GITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE  692 (872)
Q Consensus       616 ~g~g~~~~v~~~~~~~-g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~  692 (872)
                      +|.|++|.||++.... |+.++||+......  ..+.+.+|++.+++++|++|+++++++......++||||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            5899999999999754 89999999976544  25678899999999999999999999999999999999999999999


Q ss_pred             HhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccccC--CCCccccc
Q 002875          693 KIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQLAD--GSFPAKIA  766 (872)
Q Consensus       693 ~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~~~--~~~~~~~~  766 (872)
                      ++...   .++..+..++.+++++++|||+.   +++|+||+|.||+++. ++.++++|||.+.......  ........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~  157 (215)
T cd00180          81 LLKENEGKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTP  157 (215)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCC
Confidence            99764   68889999999999999999999   9999999999999998 8999999999987544332  11122233


Q ss_pred             ccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          767 WTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       767 ~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .+.+||..... ..+.+.|+||+|++++|+                                         ..+.+++..
T Consensus       158 ~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-----------------------------------------~~~~~~l~~  196 (215)
T cd00180         158 AYMAPEVLLGKGYYSEKSDIWSLGVILYEL-----------------------------------------PELKDLIRK  196 (215)
T ss_pred             CccChhHhcccCCCCchhhhHHHHHHHHHH-----------------------------------------HHHHHHHHH
Confidence            35666766555 677889999999999998                                         357788889


Q ss_pred             cccCCCCCCCCHHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~L  864 (872)
                      |++.||++||+++++++++
T Consensus       197 ~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         197 MLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             HhhCCcccCcCHHHHhhCC
Confidence            9999999999999998753

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.4e-28  Score=251.56  Aligned_cols=241  Identities=16%  Similarity=0.151  Sum_probs=187.5

Q ss_pred             hhhhccCCCCCceeeeecCCCc-EEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGI-TVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~-~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ....+|-|+||.|-.+...... .+|+|.+++.    ..+.+-...|-.+|...+.|.||++|..|.+..+.|+.||-|-
T Consensus       424 ~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaCl  503 (732)
T KOG0614|consen  424 RIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACL  503 (732)
T ss_pred             hhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhc
Confidence            5667899999999877764433 5999999753    3345556777899999999999999999999999999999999


Q ss_pred             CCChHHHhhCCCCH--HHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-cc
Q 002875          687 NGNLSEKIRTKRDW--AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-PA  763 (872)
Q Consensus       687 ~g~L~~~l~~~~~~--~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-~~  763 (872)
                      ||.+...++.+..+  .....++..+.+|++|||++   +||.||+||+|.++|.+|-+|+.|||+|+.......+. -+
T Consensus       504 GGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTFc  580 (732)
T KOG0614|consen  504 GGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFC  580 (732)
T ss_pred             CchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhhHHHhccCCceeeec
Confidence            99999999987644  45567888999999999999   99999999999999999999999999998776554443 34


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      +++.|.+||++-.......+|.||+|+++|||+||.+||.+.+.+......  +.. ++..     .......+...+++
T Consensus       581 GTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~I--LkG-id~i-----~~Pr~I~k~a~~Li  652 (732)
T KOG0614|consen  581 GTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLI--LKG-IDKI-----EFPRRITKTATDLI  652 (732)
T ss_pred             CCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHH--Hhh-hhhh-----hcccccchhHHHHH
Confidence            777788889888777888999999999999999999999865543321111  100 1110     00122334566777


Q ss_pred             HHcccCCCCCCCC-----HHHHHHH
Q 002875          844 LLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      .+....+|.+|--     +.|+-+|
T Consensus       653 k~LCr~~P~ERLG~~~~gI~DIkkH  677 (732)
T KOG0614|consen  653 KKLCRDNPTERLGYQKGGINDIKKH  677 (732)
T ss_pred             HHHHhcCcHhhhccccCChHHHHhh
Confidence            7777899999864     6666554

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=5.9e-28  Score=229.95  Aligned_cols=249  Identities=20%  Similarity=0.225  Sum_probs=181.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC-----CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~~lv~  682 (872)
                      ..+-||-|+||+||-.+. .+|+.||.|++-.-   -...+.+-+|++++..++|.||...++..+..     .+.|.|+
T Consensus        57 PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~T  136 (449)
T KOG0664|consen   57 PDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLT  136 (449)
T ss_pred             CCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHH
Confidence            567799999999999887 57999999998532   23456677889999999999999999887654     3678999


Q ss_pred             cccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          683 DYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       683 ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      |.|.. ||...|-.  .++-...+-+++||++||.|||+.   +|.||||||.|.|++++-..||+|||+++..+.....
T Consensus       137 ELmQS-DLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~  212 (449)
T KOG0664|consen  137 ELMQS-DLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRL  212 (449)
T ss_pred             HHHHh-hhhheeccCCCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccchhhhh
Confidence            99964 88877754  344456677889999999999999   9999999999999999999999999999876544332


Q ss_pred             Cc---ccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-----------------ccccc
Q 002875          761 FP---AKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-----------------GLLGE  819 (872)
Q Consensus       761 ~~---~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-----------------~~~~~  819 (872)
                      ..   .-+.||.+||+..+ ..|+..+||||.|||+.|++-++..|......+...+.                 +...-
T Consensus       213 hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H  292 (449)
T KOG0664|consen  213 NMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNH  292 (449)
T ss_pred             hhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHH
Confidence            22   24567888888765 56889999999999999999988877754332211000                 00000


Q ss_pred             cccccccC-CCC------chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          820 MYNENEVG-SSS------SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       820 ~~~~~~~~-~~~------~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      +....... ..+      .....-.+.+++..+++..||++|.+.++++.++
T Consensus       293 ~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~  344 (449)
T KOG0664|consen  293 VLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHR  344 (449)
T ss_pred             hhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccc
Confidence            11111010 000      0011123456677778899999999999988765

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=4.7e-27  Score=229.82  Aligned_cols=239  Identities=15%  Similarity=0.117  Sum_probs=176.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhh-ccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIG-TVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~-~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ...+||+|+|++|..+.+ ++.+.+|+|++++.-.    ..+-.+.|-.... .-+||.+|.++.+++++...++|.||.
T Consensus       254 ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffvieyv  333 (593)
T KOG0695|consen  254 LLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEYV  333 (593)
T ss_pred             eeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEEEe
Confidence            778999999999999885 6788999999976322    2233333333332 347999999999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc--ccCCCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ--LADGSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~--~~~~~~  761 (872)
                      +||+|.-++++  +++.+....+...|..||.|||++   +||.||+|..|||+|..|.+|++|+|+++.--  ...++.
T Consensus       334 ~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygmcke~l~~gd~tst  410 (593)
T KOG0695|consen  334 NGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDTTST  410 (593)
T ss_pred             cCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccchhhcCCCCCccccc
Confidence            99999877765  346666677888999999999999   99999999999999999999999999987532  222334


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCC-CCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA-GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      -++++.|.+||+..+..|+..+|.|++||+|+||+.|+.||.- +....+.-....+-+++-+..+..+.   ....+..
T Consensus       411 fcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiripr---slsvkas  487 (593)
T KOG0695|consen  411 FCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPR---SLSVKAS  487 (593)
T ss_pred             ccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccc---eeehhhH
Confidence            4577778899999999999999999999999999999999971 11111111111122222122122111   1223445


Q ss_pred             HHHHHcccCCCCCCCC
Q 002875          841 DVALLCTRSTPSDRPS  856 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt  856 (872)
                      .++..-+.+||.+|-.
T Consensus       488 ~vlkgflnkdp~erlg  503 (593)
T KOG0695|consen  488 HVLKGFLNKDPKERLG  503 (593)
T ss_pred             HHHHHhhcCCcHHhcC
Confidence            6666778899999853

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.93  E-value=1e-26  Score=240.16  Aligned_cols=248  Identities=16%  Similarity=0.163  Sum_probs=189.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC------CCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR------HKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~------H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      .....|.|-|+.|.+|.. .-|.+||||++.....-.+.=.+|+++|+++.      --|.++++..|...++.|||+|-
T Consensus       436 V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~  515 (752)
T KOG0670|consen  436 VQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEP  515 (752)
T ss_pred             EEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehh
Confidence            677789999999999986 45889999999877666666678899999985      34899999999999999999998


Q ss_pred             cCCCChHHHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEccccccccccccC
Q 002875          685 LPNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       685 ~~~g~L~~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~~~~~  758 (872)
                      +.- +|.++|++.     +.......++.|+..||..|-..   +|+|.||||.|||+++. ...||||||-|.......
T Consensus       516 Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~ene  591 (752)
T KOG0670|consen  516 LSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLCDFGSASFASENE  591 (752)
T ss_pred             hhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeeccCcccccccccc
Confidence            854 999999863     34567788999999999999988   99999999999999854 569999999987654332


Q ss_pred             CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-------------c-cc-cccccccc
Q 002875          759 GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-------------I-DG-LLGEMYNE  823 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-------------~-~~-~~~~~~~~  823 (872)
                      -+-..-..+|.+||++-+..|.+..|+||.||.+||+.||+..|++....+..-             + .+ ...+.++.
T Consensus       592 itPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~  671 (752)
T KOG0670|consen  592 ITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQ  671 (752)
T ss_pred             ccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhccc
Confidence            211112346889999999999999999999999999999999998654322100             0 00 00000000


Q ss_pred             ------------------------cc--------cC---CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          824 ------------------------NE--------VG---SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       824 ------------------------~~--------~~---~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                              .+        +.   .+......+..+.+++..|+..||++|.|..++++|
T Consensus       672 d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~H  746 (752)
T KOG0670|consen  672 DLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKH  746 (752)
T ss_pred             ccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcC
Confidence                                    00        00   112223456678899999999999999999999875

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=3.2e-26  Score=218.43  Aligned_cols=254  Identities=15%  Similarity=0.125  Sum_probs=174.6

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEE-EEecCCee
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLG-FCYNRHQA  678 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~-~~~~~~~~  678 (872)
                      .++.+.|+  +...+|+|.||++-.+.. ++.+.+|+|.+.......++|.+|...==.+ .|.|||.-|+ .|++.+.+
T Consensus        20 v~l~d~y~--I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~Y   97 (378)
T KOG1345|consen   20 VDLEDVYT--INKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAY   97 (378)
T ss_pred             cchhhhhh--HHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceE
Confidence            34455677  899999999999999885 6678899999987777778888876542223 4899998765 46778899


Q ss_pred             EEEEcccCCCChHHHhhCC-CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC--CCCCeeEcccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD--ENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~-~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~--~~~~~ki~dfg~~~~~~  755 (872)
                      ++||||+|.|||..-+... ......++++.|++.|+.|||+.   .+||||||.+||||-  +..++|++|||..+...
T Consensus        98 vF~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g  174 (378)
T KOG1345|consen   98 VFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLTRKVG  174 (378)
T ss_pred             EEeeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecccccccC
Confidence            9999999999999988764 35566788999999999999999   999999999999994  34579999999976433


Q ss_pred             ccCCCCcccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          756 LADGSFPAKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       756 ~~~~~~~~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      ........... |.+||...     .....+.+|||.||+++|..+||+.||..+... +.++..+. +.....-...+.
T Consensus       175 ~tV~~~~~~~~-y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~-d~~Y~~~~-~w~~rk~~~~P~  251 (378)
T KOG1345|consen  175 TTVKYLEYVNN-YHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIM-DKPYWEWE-QWLKRKNPALPK  251 (378)
T ss_pred             ceehhhhhhcc-cCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhcc-CchHHHHH-HHhcccCccCch
Confidence            21111111222 33444332     123455679999999999999999999843321 11111110 000000011122


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......+.++.+..+-+..+|++|-.+.++.++
T Consensus       252 ~F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~  284 (378)
T KOG1345|consen  252 KFNPFSEKALRLFKKSLTPRFKDRCKIWTAKKM  284 (378)
T ss_pred             hhcccCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence            222334456667777888999999555555443

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=3.2e-25  Score=228.35  Aligned_cols=126  Identities=21%  Similarity=0.248  Sum_probs=109.6

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-----C---CCceeEEEEEec----CC
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-----H---KNLIRLLGFCYN----RH  676 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-----H---~niv~l~~~~~~----~~  676 (872)
                      |-...++|+|.|++||.+-. .+.+.||+|+.+-.....+....||+++++++     |   .+||+|+++|..    +.
T Consensus        80 Y~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~  159 (590)
T KOG1290|consen   80 YHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQ  159 (590)
T ss_pred             EEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCc
Confidence            34889999999999999986 55678999999876677888889999999884     3   479999999974    35


Q ss_pred             eeEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC
Q 002875          677 QAYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD  738 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~  738 (872)
                      ++|||+||. |-+|..+|..    .++....++|++||+.||.|||..|  +|||-||||+|||+-
T Consensus       160 HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  160 HVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLC  222 (590)
T ss_pred             EEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeee
Confidence            899999999 5689999865    5688899999999999999999998  999999999999983

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.92  E-value=9.5e-26  Score=236.20  Aligned_cols=191  Identities=20%  Similarity=0.179  Sum_probs=158.8

Q ss_pred             cchhhhccCCCCCceeeeecCC-CcEEEEEEeeccchh---------HHHHHHHHHHhhccC---CCCceeEEEEEecCC
Q 002875          610 STECEEAARPQSAAGCKAVLPT-GITVSVKKIEWGATR---------IKIVSEFITRIGTVR---HKNLIRLLGFCYNRH  676 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~-g~~vavK~~~~~~~~---------~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~  676 (872)
                      |.....+|+|+||+|..|+.+. ..+|+||.+.+.+.-         ......||++|+.++   |+||++++++|++++
T Consensus       563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEddd  642 (772)
T KOG1152|consen  563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFEDDD  642 (772)
T ss_pred             ceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeecCC
Confidence            4588999999999999999754 457999999764322         223457999999998   999999999999999


Q ss_pred             eeEEEEccc-CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          677 QAYLLYDYL-PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       677 ~~~lv~ey~-~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      ++||+||-- ++-||+++|..  ..+..+...|++||+.|+++||..   +|||||||-+||.+|.+|.+|++|||-+..
T Consensus       643 ~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~klidfgsaa~  719 (772)
T KOG1152|consen  643 YYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFVKLIDFGSAAY  719 (772)
T ss_pred             eeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeEEEeeccchhh
Confidence            999999964 56789999965  456777889999999999999999   999999999999999999999999998866


Q ss_pred             ccccCCCCcccccccCchhhhcccCCc-ccccchhHHHHHHHHHcCCCCCC
Q 002875          754 TQLADGSFPAKIAWTESGEFYNAMKEE-MYMDVYGFGEIILEILTNGRLTN  803 (872)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~Dv~S~Gvil~el~tg~~p~~  803 (872)
                      .....-..-.++..|++||+..+.+|. ..-|||++|+++|.++....|++
T Consensus       720 ~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  720 TKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             hcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            554433333456668899998877654 44699999999999999887775

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.92  E-value=3.2e-26  Score=243.84  Aligned_cols=243  Identities=15%  Similarity=0.163  Sum_probs=184.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ....+|.|+||.|||++. .+|+.+|||.++.... .....++||-+++..+|||||.++|.|...+..+++||||.+|+
T Consensus        19 llqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggs   98 (829)
T KOG0576|consen   19 LLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGS   98 (829)
T ss_pred             heeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCc
Confidence            678899999999999985 6899999999987543 35667888999999999999999999999999999999999999


Q ss_pred             hHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCcccc
Q 002875          690 LSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPAKI  765 (872)
Q Consensus       690 L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~~~  765 (872)
                      |++.-+..+  ...+...+++...+|++|+|+.   +-+|||||-.||++++.+.+|++|||.+..+...-  .....++
T Consensus        99 lQdiy~~TgplselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGt  175 (829)
T KOG0576|consen   99 LQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGT  175 (829)
T ss_pred             ccceeeecccchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhhhhhhhhhhcccCC
Confidence            999776544  4445567888999999999999   88999999999999999999999999875432211  1122356


Q ss_pred             cccCchhhh---cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          766 AWTESGEFY---NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       766 ~~~~~~e~~---~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      +|+++||+.   ....|..++|||+.|+...|+.--+.|.++-...+...++  -.-.+++........   ....+-++
T Consensus       176 pywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~Lm--TkS~~qpp~lkDk~k---ws~~fh~f  250 (829)
T KOG0576|consen  176 PYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLM--TKSGFQPPTLKDKTK---WSEFFHNF  250 (829)
T ss_pred             ccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHh--hccCCCCCcccCCcc---chHHHHHH
Confidence            677777754   3456888999999999999998877776544332211111  111222222222222   23345677


Q ss_pred             HHHcccCCCCCCCCHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      +..|+-++|++|||++.++.
T Consensus       251 vK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  251 VKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             HHHHhcCCCccCCChhhhee
Confidence            88899999999999987654

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=3.1e-24  Score=219.51  Aligned_cols=190  Identities=20%  Similarity=0.215  Sum_probs=161.0

Q ss_pred             hhhhccCCCCCceeeeecCC-CcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPT-GITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.+|.|++|.||++...+ ++.+|+|.+.....  ..+.+.+|++.+++++|+|++++++++......++|+||++++
T Consensus         3 ~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~   82 (225)
T smart00221        3 LGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGG   82 (225)
T ss_pred             eeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCC
Confidence            56789999999999999865 89999999975433  4678888999999999999999999999989999999999999


Q ss_pred             ChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCCc
Q 002875          689 NLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSFP  762 (872)
Q Consensus       689 ~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~~  762 (872)
                      +|.+++...   .++.....++.+++.|++|+|..   +++|+|++|.||+++.++.++++|||.+.......   ....
T Consensus        83 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~  159 (225)
T smart00221       83 DLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTV  159 (225)
T ss_pred             CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccce
Confidence            999998652   67888899999999999999998   99999999999999999999999999987654332   1111


Q ss_pred             ccccccCchhhh-cccCCcccccchhHHHHHHHHHcCCCCCCC
Q 002875          763 AKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNA  804 (872)
Q Consensus       763 ~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~  804 (872)
                      .+...+.+||.. ....++.++||||||+++|||++|+.||..
T Consensus       160 ~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      160 KGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             eccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            233446677766 555667789999999999999999999864

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=4.1e-27  Score=236.17  Aligned_cols=289  Identities=21%  Similarity=0.222  Sum_probs=180.2

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcC-CcCccccCccccCCCCCCEEE
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS-NSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~-n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      .+-+.++|..|.|+.+.|.+|..+++||.||||+|.|+.+-|++|++++.|..|-+.+ |+|+......|.+|..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4678899999999999999999999999999999999999999999999988876655 899976666899999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      +.-|.+.-+..+.|..|++|..|.+..|.+..+-...|..+..++.+.+..|.+-.        .-+|+++-    .+..
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic--------dCnL~wla----~~~a  214 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC--------DCNLPWLA----DDLA  214 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc--------ccccchhh----hHHh
Confidence            99999988888999999999999999999976666689999999998888775321        11222210    0000


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccC-CCCCEEeCcCCCCcCcCC-ccccCCCCCCEEEcccccCCCCCCccc
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV-TTLKSLDLSDNRLSGPIP-ESFADLKNLRLLSLMYNEMSGTVPESL  254 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l  254 (872)
                      ..|.+++..+......+.++.+..+.+..|... .++.+--.+.+....+.| ..|..+++|+.|+|++|+++.+-+.+|
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence            122233333333333333333333333222211 111110111111112222 235555555555555555555555555


Q ss_pred             cCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcC
Q 002875          255 VQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNF  318 (872)
Q Consensus       255 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~  318 (872)
                      ..+..+++|.|..|++...-...|.+++.|+.|++++|+++...|..|..+..+..+.+.+|.+
T Consensus       295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            5555555555555555443344445555555555555555544444444444444444444433

>PLN03210 Resistant to P

Probab=99.91  E-value=5.2e-23  Score=255.43  Aligned_cols=341  Identities=22%  Similarity=0.281  Sum_probs=223.6

Q ss_pred             cCCccccCCCCCCEEECcCCc------CcccCCccccCCC-CCcEEECcCCcCccccCccccCCCCCCEEEccCCccccc
Q 002875           33 QFPVEIFNLTSLISLDISRNN------FSGHFPGGIQSLR-NLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGP  105 (872)
Q Consensus        33 ~~~~~~~~l~~L~~L~Ls~N~------i~~~~~~~~~~l~-~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~  105 (872)
                      +.+.+|.+|.+|+.|.+.++.      +...+|+.|..++ +|+.|++.++.+. .+|..| ...+|++|+|.+|.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            456678889999999887653      3335677777664 5888988888776 677777 4688899999988876 5


Q ss_pred             CCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCC
Q 002875          106 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNL  185 (872)
Q Consensus       106 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l  185 (872)
                      +|..+..+++|+.|+|+++...+.+| .++.+++|+.|++++|.....+|..+.++.+|+.|++++|...+.+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            67778888999999998876545565 47788888888888887777788888888888888888876655677665 67


Q ss_pred             CCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCC-------CCCccccCCC
Q 002875          186 TKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG-------TVPESLVQLP  258 (872)
Q Consensus       186 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~p~~l~~l~  258 (872)
                      ++|+.|++++|......|.   ..++|+.|++++|.+. .+|..+ .+++|+.|.+..+....       ..+......+
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            8888888888765555543   2457888888888876 355544 56777777776543211       1111122345


Q ss_pred             CcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcC
Q 002875          259 SLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLE  338 (872)
Q Consensus       259 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~  338 (872)
                      +|+.|++++|...+.+|..++.+++|+.|++++|...+.+|...                         ++++|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------~L~sL~~L~Ls  833 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------NLESLESLDLS  833 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------CccccCEEECC
Confidence            67777777776666677777777777777777664433444432                         34455555555


Q ss_pred             CCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCccccccccccc
Q 002875          339 DNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASAC  413 (872)
Q Consensus       339 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~  413 (872)
                      +|.....+|..   .++|+.|++++|.+. .+|..+..+++|++|++++|+.+.. +|.....+++|+.+++++|
T Consensus       834 ~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        834 GCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCC
Confidence            54332222221   234555555555554 3455555555555565555544432 3334445555666666555

syringae 6; Provisional

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.90  E-value=1.1e-23  Score=214.77  Aligned_cols=195  Identities=17%  Similarity=0.221  Sum_probs=153.7

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeecC----CCcEEEEEEeeccchhHHHHHHHHHHhhccC-CCCceeEEEEEecCCee
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGATRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~  678 (872)
                      +...|.  ..+++|+|.|+.||++++.    ..+.||+|.+...+. ......|++.|.++. |.||+++.+++...+..
T Consensus        34 ~~~~~~--~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~-p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v  110 (418)
T KOG1167|consen   34 ISNAYK--VVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS-PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQV  110 (418)
T ss_pred             hhhhhh--hhccccccchhhhhhhhHhhhccccceEeeeecccccC-chHHHHHHHHHHHhccchhhhcchhhhccCCee
Confidence            344555  8899999999999999864    467899999875433 344778899998875 89999999999999999


Q ss_pred             EEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccc-
Q 002875          679 YLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQL-  756 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~-  756 (872)
                      .+|+||++.-+-.++.. ..+..+...+++.+..||+|+|+.   |||||||||+|+|.+. .+.-.|.|||+|...+. 
T Consensus       111 ~ivlp~~~H~~f~~l~~-~l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~  186 (418)
T KOG1167|consen  111 AIVLPYFEHDRFRDLYR-SLSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGY  186 (418)
T ss_pred             EEEecccCccCHHHHHh-cCCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEechhHHHHHhh
Confidence            99999999988777765 456888899999999999999999   9999999999999984 46789999999862100 


Q ss_pred             -------c---------CC-----------------------------CCcccccccCchhhh-cccCCcccccchhHHH
Q 002875          757 -------A---------DG-----------------------------SFPAKIAWTESGEFY-NAMKEEMYMDVYGFGE  790 (872)
Q Consensus       757 -------~---------~~-----------------------------~~~~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gv  790 (872)
                             .         .+                             ....|++.+.+||+. .....++++||||.||
T Consensus       187 ~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GV  266 (418)
T KOG1167|consen  187 QQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGV  266 (418)
T ss_pred             hhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccc
Confidence                   0         00                             001123334455654 3456678899999999


Q ss_pred             HHHHHHcCCCCCCCC
Q 002875          791 IILEILTNGRLTNAG  805 (872)
Q Consensus       791 il~el~tg~~p~~~~  805 (872)
                      |++-+++++.||+..
T Consensus       267 I~Lslls~~~PFf~a  281 (418)
T KOG1167|consen  267 ILLSLLSRRYPFFKA  281 (418)
T ss_pred             eeehhhccccccccC
Confidence            999999999999843

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.90  E-value=2.5e-24  Score=259.65  Aligned_cols=190  Identities=17%  Similarity=0.204  Sum_probs=135.3

Q ss_pred             ccCC-CCceeEEEEEe-------cCCeeEEEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 002875          659 TVRH-KNLIRLLGFCY-------NRHQAYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPH  727 (872)
Q Consensus       659 ~l~H-~niv~l~~~~~-------~~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~H  727 (872)
                      +++| +||++++++|.       +.+.++.+|||+ +++|.+++..   ..++.+...++.||++||+|||++   +|+|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---gIvH  103 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQ---GIVV  103 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhC---Ceee
Confidence            4566 68888999872       334677889988 5699999964   357788899999999999999998   9999


Q ss_pred             CCCCCCCeeeCC-------------------CCCeeEccccccccccccC------------------CCCcccccccCc
Q 002875          728 GDLKASNIVFDE-------------------NMEPHLAEFGFKYLTQLAD------------------GSFPAKIAWTES  770 (872)
Q Consensus       728 rdlk~~Nill~~-------------------~~~~ki~dfg~~~~~~~~~------------------~~~~~~~~~~~~  770 (872)
                      |||||+|||++.                   ++.+|++|||+++......                  .....++.+|++
T Consensus       104 rDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~A  183 (793)
T PLN00181        104 HNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTS  183 (793)
T ss_pred             ccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEC
Confidence            999999999953                   4567778888775321100                  000124567888


Q ss_pred             hhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCC
Q 002875          771 GEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRST  850 (872)
Q Consensus       771 ~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~d  850 (872)
                      ||+..+..++.++|||||||++|||++|..|+.....    ...........       +.......+..+++.+||+.|
T Consensus       184 PE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~~  252 (793)
T PLN00181        184 PEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR----TMSSLRHRVLP-------PQILLNWPKEASFCLWLLHPE  252 (793)
T ss_pred             hhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH----HHHHHHHhhcC-------hhhhhcCHHHHHHHHHhCCCC
Confidence            9988888889999999999999999998776542110    00000001111       111111234557788999999


Q ss_pred             CCCCCCHHHHHHH
Q 002875          851 PSDRPSMEEALKL  863 (872)
Q Consensus       851 p~~Rpt~~~v~~~  863 (872)
                      |.+||+|.|++++
T Consensus       253 P~~Rps~~eil~h  265 (793)
T PLN00181        253 PSCRPSMSELLQS  265 (793)
T ss_pred             hhhCcChHHHhhc
Confidence            9999999999864

>PLN03210 Resistant to P

Probab=99.89  E-value=4.8e-22  Score=246.83  Aligned_cols=336  Identities=19%  Similarity=0.234  Sum_probs=263.9

Q ss_pred             CCCCcEEECCCCC------CcccCCccccCCC-CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCC
Q 002875           17 FNELVDLNLSHNS------FSGQFPVEIFNLT-SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQL   89 (872)
Q Consensus        17 ~~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L   89 (872)
                      +++|+.|.+.++.      +...+|..|..++ +|+.|++.+|.+. .+|..| ...+|+.|++.+|.+. .+|..+..+
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l  633 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSL  633 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccC
Confidence            7889999987653      3345677787775 5999999999886 567777 5789999999999987 578889999


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEe
Q 002875           90 EHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDI  169 (872)
Q Consensus        90 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  169 (872)
                      ++|++|+|+++.....+|. ++.+++|++|+|++|.....+|..++.+++|+.|++++|.....+|..+ ++++|+.|++
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L  711 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL  711 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence            9999999999876666775 8899999999999988777899999999999999999987777788765 7899999999


Q ss_pred             ecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCc-------CcCCccccCCCCCCEEEcc
Q 002875          170 AGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS-------GPIPESFADLKNLRLLSLM  242 (872)
Q Consensus       170 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~L~  242 (872)
                      ++|...+.+|..   .++|+.|++++|.+.. +|..+ .+++|++|++.++...       ...+..+...++|+.|+++
T Consensus       712 sgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls  786 (1153)
T PLN03210        712 SGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS  786 (1153)
T ss_pred             CCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence            999776666653   4678999999999874 45444 5788888888764321       1122233345789999999


Q ss_pred             cccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCC
Q 002875          243 YNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSL  322 (872)
Q Consensus       243 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~  322 (872)
                      +|...+.+|..+..+++|+.|++++|...+.+|... .+++|+.|++++|.....+|.                      
T Consensus       787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----------------------  843 (1153)
T PLN03210        787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----------------------  843 (1153)
T ss_pred             CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----------------------
Confidence            998888899999999999999999987666778765 688999999998754333321                      


Q ss_pred             CCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCC
Q 002875          323 SPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKL  391 (872)
Q Consensus       323 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l  391 (872)
                           ..++|+.|++++|.++ .+|..+..+++|++|++++|+-...+|.....+++|+.+++++|+.+
T Consensus       844 -----~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        844 -----ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             -----cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence                 1256778888888877 46777778888888888875444456667777888888888888544

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-25  Score=225.94  Aligned_cols=263  Identities=23%  Similarity=0.248  Sum_probs=189.3

Q ss_pred             cCCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcC-CcCcccCCccccCCCCCcEEECcCCcCccccCcc
Q 002875            7 ALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISR-NNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAE   85 (872)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~   85 (872)
                      +||+..+.. ++.||+||||+|.|+.|-|++|.++.+|.+|-+.+ |+|+.+.-+.|.+|..|+.|.+.-|++.-+....
T Consensus        81 ~iP~~aF~~-l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a  159 (498)
T KOG4237|consen   81 SIPPGAFKT-LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA  159 (498)
T ss_pred             cCChhhccc-hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence            577765543 88999999999999999999999999999987766 9999888889999999999999999998777888


Q ss_pred             ccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCC------------ccCCccCCCCCCCCEEEccCccCccc
Q 002875           86 ISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLN------------DQIPAELGMLKTVTHMEIGYNFYQGN  153 (872)
Q Consensus        86 ~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~------------~~~p~~l~~L~~L~~L~l~~n~~~~~  153 (872)
                      |..|++|..|.+..|.+..+.-..|..+.+++++.+..|.+-            ...|.+++...-..-..+.++.+...
T Consensus       160 l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~  239 (498)
T KOG4237|consen  160 LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQE  239 (498)
T ss_pred             HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhccc
Confidence            999999999999999998655558999999999999999831            12233333333333222322222211


Q ss_pred             CCcccc-CCCCCcEEEeecCCCcccCC-ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCcccc
Q 002875          154 IPWQLG-NMSEVQYLDIAGANLSGSIP-KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFA  231 (872)
Q Consensus       154 ~p~~~~-~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  231 (872)
                      -+..+. .+..+..=-.+.+...+.-| ..|..|++|+.|+|++|+++++.+.+|..+.++++|.|..|++..+....|.
T Consensus       240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~  319 (498)
T KOG4237|consen  240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ  319 (498)
T ss_pred             chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh
Confidence            111111 01111110112222333333 3467778888888888888877777788888888888888887766666777


Q ss_pred             CCCCCCEEEcccccCCCCCCccccCCCCcceeecccccc
Q 002875          232 DLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF  270 (872)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  270 (872)
                      ++..|+.|+|.+|+|+...|.+|..+.+|..|++-.|.+
T Consensus       320 ~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  320 GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            788888888888888777777777777788777776654

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.87  E-value=2.2e-22  Score=197.15  Aligned_cols=165  Identities=19%  Similarity=0.180  Sum_probs=121.2

Q ss_pred             CChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          688 GNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       688 g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      |+|.++++.   ..++.+.+.|+.|+++||+|||+.   +      ||+||+++.++.+|+  ||+++.......   .+
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~~---~g   66 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQS---RV   66 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeeccccC---CC
Confidence            789999974   368999999999999999999998   4      999999999999999  999876433221   23


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH--HHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK--LVLDV  842 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l  842 (872)
                      ...|++||+..+..++.++|||||||++|||+||+.||........ ........+.... ............  ++.++
T Consensus        67 ~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  144 (176)
T smart00750       67 DPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSA-ILEILLNGMPADD-PRDRSNLESVSAARSFADF  144 (176)
T ss_pred             cccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcH-HHHHHHHHhccCC-ccccccHHHHHhhhhHHHH
Confidence            4668888998888889999999999999999999999864332111 0111111111111 000111222222  58899


Q ss_pred             HHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          843 ALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+||+.||++||++.|+++++..+.
T Consensus       145 i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      145 MRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             HHHHHhcccccccCHHHHHHHHHHHH
Confidence            99999999999999999999986553

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.9e-22  Score=192.48  Aligned_cols=243  Identities=18%  Similarity=0.289  Sum_probs=175.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ...++.+...|+.++|+. .|..+++|+++...   .-.+.|.+|.-.++-+.||||++++|.|.++....++..|||.|
T Consensus       194 l~tkl~e~hsgelwrgrw-qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~g  272 (448)
T KOG0195|consen  194 LITKLAESHSGELWRGRW-QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFG  272 (448)
T ss_pred             hhhhhccCCCcccccccc-cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccch
Confidence            566788899999999998 46667777775432   23567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhCCC----CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEc--cccccccccccCCCCc
Q 002875          689 NLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA--EFGFKYLTQLADGSFP  762 (872)
Q Consensus       689 ~L~~~l~~~~----~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~--dfg~~~~~~~~~~~~~  762 (872)
                      ||...+++.-    +..+..+++.+||+|++|||+. +|-|..--+.+..+++|++.+++|+  |--++.  +.  ....
T Consensus       273 slynvlhe~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsf--qe--~gr~  347 (448)
T KOG0195|consen  273 SLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSF--QE--VGRA  347 (448)
T ss_pred             HHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeee--ec--cccc
Confidence            9999999743    6678899999999999999986 4445556788999999999998884  322221  11  1111


Q ss_pred             ccccccCchhhhcccC--CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMK--EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~--~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+|++|+.......  .-..+|+|||++++||+.|...||.+-...+-.. ...+... ..   ..++   .....+.
T Consensus       348 y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgm-kialegl-rv---~ipp---gis~hm~  419 (448)
T KOG0195|consen  348 YSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGM-KIALEGL-RV---HIPP---GISRHMN  419 (448)
T ss_pred             cCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhh-hhhhccc-cc---cCCC---CccHHHH
Confidence            2345554433332222  2244799999999999999999987544322111 1111111 11   1122   1234466


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .++.-|+..||.+||.++.++-.|++|+
T Consensus       420 klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  420 KLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             HHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            7777799999999999999999999875

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.85  E-value=3.5e-21  Score=204.95  Aligned_cols=135  Identities=19%  Similarity=0.201  Sum_probs=110.2

Q ss_pred             hcCcchhhhccCCCCCceeeeecC--CCcEEEEEEeecc------chhHHHHHHHHHHhhccCCCCcee-EEEEEecCCe
Q 002875          607 SFNSTECEEAARPQSAAGCKAVLP--TGITVSVKKIEWG------ATRIKIVSEFITRIGTVRHKNLIR-LLGFCYNRHQ  677 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~~--~g~~vavK~~~~~------~~~~~~~~~e~~~l~~l~H~niv~-l~~~~~~~~~  677 (872)
                      .|.  ..+.||+|+||+||+|...  +|+.||||++...      ....+.+.+|++++++++|+|+|+ ++++    +.
T Consensus        19 ~Y~--~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----~~   92 (365)
T PRK09188         19 RFV--ETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----GK   92 (365)
T ss_pred             Cce--EccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----CC
Confidence            355  8899999999999999763  6788899987532      123556899999999999999995 4432    46


Q ss_pred             eEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCC-CCCCeeeCCCCCeeEcccccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL-KASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdl-k~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      .|+||||+++++|... ... .   ...++.|+++||+|+|+.   +|+|||| ||+||+++.++.+||+|||+++...
T Consensus        93 ~~LVmE~~~G~~L~~~-~~~-~---~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~  163 (365)
T PRK09188         93 DGLVRGWTEGVPLHLA-RPH-G---DPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVIDFQLASVFR  163 (365)
T ss_pred             cEEEEEccCCCCHHHh-Ccc-c---hHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEEECccceecc
Confidence            7999999999999732 211 1   246788999999999999   9999999 9999999999999999999997654

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.82  E-value=2.8e-20  Score=182.30  Aligned_cols=135  Identities=9%  Similarity=0.062  Sum_probs=105.8

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeeccchh---------------------------HHHHHHHHHHhhccCCCCc
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR---------------------------IKIVSEFITRIGTVRHKNL  665 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~---------------------------~~~~~~e~~~l~~l~H~ni  665 (872)
                      ...||+|++|.||+|...+|+.||||+++.+...                           ......|++.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3579999999999999889999999999754211                           0122348999999988877


Q ss_pred             eeEEEEEecCCeeEEEEcccCCCChHHHh-h-CCCCHHHHHHHHHHHHHHHHHH-hhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          666 IRLLGFCYNRHQAYLLYDYLPNGNLSEKI-R-TKRDWAAKYKIVLGVARGLCFL-HHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       666 v~l~~~~~~~~~~~lv~ey~~~g~L~~~l-~-~~~~~~~~~~i~~~i~~gl~~l-H~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      .....+...  ..+|||||++++++.... . ...+..+...++.|++.+|+|+ |+.   +|+||||||+||+++ ++.
T Consensus        82 ~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~NIli~-~~~  155 (190)
T cd05147          82 PCPEPILLK--SHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYNLLYH-DGK  155 (190)
T ss_pred             CCCcEEEec--CCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEE-CCc
Confidence            543333222  238999999998876543 2 2456777889999999999999 577   999999999999998 478


Q ss_pred             eeEcccccccc
Q 002875          743 PHLAEFGFKYL  753 (872)
Q Consensus       743 ~ki~dfg~~~~  753 (872)
                      ++++|||++..
T Consensus       156 v~LiDFG~a~~  166 (190)
T cd05147         156 LYIIDVSQSVE  166 (190)
T ss_pred             EEEEEcccccc
Confidence            99999999864

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.81  E-value=2.7e-20  Score=183.50  Aligned_cols=166  Identities=13%  Similarity=0.101  Sum_probs=126.5

Q ss_pred             cchhhhccCCCCCceeeeecCCCcEEEEEEeeccchhH----------HHHHHHHHHhhccCCCCceeEEEEEecC----
Q 002875          610 STECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRI----------KIVSEFITRIGTVRHKNLIRLLGFCYNR----  675 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~----------~~~~~e~~~l~~l~H~niv~l~~~~~~~----  675 (872)
                      |...+.+|.|+||.||.... ++..+|||.+.......          +.+.+|+..+.+++||+|....+++...    
T Consensus        33 y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~  111 (232)
T PRK10359         33 IKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKT  111 (232)
T ss_pred             eEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeeccccc
Confidence            44889999999999999655 67789999997532221          1267899999999999999999886533    


Q ss_pred             ----CeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          676 ----HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       676 ----~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                          +..++||||++|.+|.++...  +    .....+++.++..+|+.   +++|||+||+||+++.++ ++++|||..
T Consensus       112 ~~~~~~~~lvmEyi~G~tL~~~~~~--~----~~~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g-i~liDfg~~  181 (232)
T PRK10359        112 LRYAHTYIMLIEYIEGVELNDMPEI--S----EDVKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG-LRIIDLSGK  181 (232)
T ss_pred             ccccCCeEEEEEEECCccHHHhhhc--c----HHHHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC-EEEEECCCc
Confidence                357899999999999887421  1    13466999999999999   999999999999999888 999999987


Q ss_pred             ccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHH
Q 002875          752 YLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL  796 (872)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~  796 (872)
                      +.....          .+...+.....+..++|+|||||.+.-..
T Consensus       182 ~~~~e~----------~a~d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        182 RCTAQR----------KAKDRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             ccccch----------hhHHHHHHHhHhcccccccceeEeehHHH
Confidence            543211          11112333334557899999998765543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.81  E-value=5.2e-20  Score=198.77  Aligned_cols=208  Identities=21%  Similarity=0.341  Sum_probs=154.0

Q ss_pred             hhccCCCCceeEEEEEecCCeeEEEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCc-ccCCCCC
Q 002875          657 IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAI-PHGDLKA  732 (872)
Q Consensus       657 l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i-~Hrdlk~  732 (872)
                      |+.+.|.|+.+++|.+.++...+.|.+||+.|+|.|.+..   ..+|.-...+++++++||+|+|+.   +| .|+.+++
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~~hg~l~s   77 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNS---PIGYHGALKS   77 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcC---cceeeeeecc
Confidence            4568999999999999999999999999999999999987   457888889999999999999987   55 9999999


Q ss_pred             CCeeeCCCCCeeEcccccccccccc----CCC-CcccccccCchhhhccc-------CCcccccchhHHHHHHHHHcCCC
Q 002875          733 SNIVFDENMEPHLAEFGFKYLTQLA----DGS-FPAKIAWTESGEFYNAM-------KEEMYMDVYGFGEIILEILTNGR  800 (872)
Q Consensus       733 ~Nill~~~~~~ki~dfg~~~~~~~~----~~~-~~~~~~~~~~~e~~~~~-------~~~~~~Dv~S~Gvil~el~tg~~  800 (872)
                      +|+++|..+.+|++|||+.......    ... .....- +.+||.....       ..+.+.||||||++++|+++.+.
T Consensus        78 ~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~l-w~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   78 SNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALL-WTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG  156 (484)
T ss_pred             ccceeeeeEEEEechhhhcccccccccccccchhHHHHh-ccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence            9999999999999999998665320    001 111223 3455655432       14566899999999999999999


Q ss_pred             CCCCCCCCCCcccccccccccc-ccccCCCCch--HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          801 LTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSL--QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       801 p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      ||.........  .+.+..+.+ ......+...  .+...++..++..||..+|++||+++++-..++.+..+
T Consensus       157 ~~~~~~~~~~~--~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  157 PFDLRNLVEDP--DEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             ccccccccCCh--HHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccc
Confidence            99854432221  111111111 1111111111  13344688999999999999999999999888877654

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.81  E-value=1.3e-19  Score=178.79  Aligned_cols=136  Identities=11%  Similarity=0.106  Sum_probs=108.3

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeeccchh---------------------------HHHHHHHHHHhhccCCCCc
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR---------------------------IKIVSEFITRIGTVRHKNL  665 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~---------------------------~~~~~~e~~~l~~l~H~ni  665 (872)
                      ...||+|++|.||+|...+|+.||||+++.+...                           ...+..|.+.+.++.|++|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3578999999999999889999999998754210                           1123578899999999988


Q ss_pred             eeEEEEEecCCeeEEEEcccCCCChHHH-hhC-CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCC
Q 002875          666 IRLLGFCYNRHQAYLLYDYLPNGNLSEK-IRT-KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       666 v~l~~~~~~~~~~~lv~ey~~~g~L~~~-l~~-~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      .....+...  ..++||||++++++... +.. ..+..+...++.|++.++.|+|+ .   +|+||||||+||+++ ++.
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NIll~-~~~  155 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNILYH-DGK  155 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhEEEE-CCC
Confidence            655444433  24899999998865433 332 34567778999999999999999 8   999999999999999 789


Q ss_pred             eeEccccccccc
Q 002875          743 PHLAEFGFKYLT  754 (872)
Q Consensus       743 ~ki~dfg~~~~~  754 (872)
                      ++++|||++...
T Consensus       156 ~~liDFG~a~~~  167 (190)
T cd05145         156 PYIIDVSQAVEL  167 (190)
T ss_pred             EEEEEcccceec
Confidence            999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=4.1e-19  Score=204.16  Aligned_cols=266  Identities=23%  Similarity=0.333  Sum_probs=168.5

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .-..|+|+.|.++ .+|..+.  ++|+.|++++|+++. +|.   ..++|++|++++|+++. +|..   .++|+.|+|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            4567888888887 4566665  478888888888874 443   24677888888887773 4532   3577777888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+.. +|..   .++|+.|++++|+++. +|..                           +++|+.|++++|.+.+ +
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---------------------------p~~L~~LdLS~N~L~~-L  317 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---------------------------PPGLQELSVSDNQLAS-L  317 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCcccc-cccc---------------------------ccccceeECCCCcccc-C
Confidence            777763 4432   2456777777777653 2221                           2345555666665553 2


Q ss_pred             CccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCC
Q 002875          179 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP  258 (872)
Q Consensus       179 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  258 (872)
                      |...   .+|+.|++++|++++. |.   ...+|+.|+|++|+|+. +|..   ..+|+.|++++|++.. +|..   ..
T Consensus       318 p~lp---~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~  382 (788)
T PRK15387        318 PALP---SELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS  382 (788)
T ss_pred             CCCc---ccccccccccCccccc-cc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence            3211   2455666666666542 22   11367777777777764 3332   2456677777777764 4432   24


Q ss_pred             CcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcC
Q 002875          259 SLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLE  338 (872)
Q Consensus       259 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~  338 (872)
                      +|+.|++++|.+++ +|..   .++|+.|++++|.+. .+|..                           ..+|+.|+++
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---------------------------~~~L~~L~Ls  430 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---------------------------PSGLLSLSVY  430 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---------------------------hhhhhhhhhc
Confidence            67778888887774 4432   245777777777765 23321                           1356778888


Q ss_pred             CCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhh
Q 002875          339 DNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQ  376 (872)
Q Consensus       339 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  376 (872)
                      +|+++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus       431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            88887 56777888888889999999888776665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=9e-19  Score=201.37  Aligned_cols=256  Identities=25%  Similarity=0.315  Sum_probs=157.7

Q ss_pred             CCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEcc
Q 002875           67 NLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIG  146 (872)
Q Consensus        67 ~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~  146 (872)
                      .-..||++.|.++ .+|..+.  .+|+.|++++|.++. +|..   .++|++|+|++|+++. +|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            3456777777766 4565554  367777777777663 4432   4667777777777654 3322   2455666666


Q ss_pred             CccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcC
Q 002875          147 YNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI  226 (872)
Q Consensus       147 ~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  226 (872)
                      .|.+.. +|..   ..+|+.|++++|.++. +|..   +++|+.|++++|++++. |..   ..+|+.|++++|.+++ +
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-CCC---cccccccccccCcccc-c
Confidence            665442 2221   2456677777777763 4432   35677777777777653 221   2346667777777663 3


Q ss_pred             CccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCC
Q 002875          227 PESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGG  306 (872)
Q Consensus       227 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~  306 (872)
                      |..   ..+|+.|++++|+++. +|..   .++|+.|++++|.+.. +|..   ..+|+.|++++|.+.           
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-----------  395 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-----------  395 (788)
T ss_pred             ccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-----------
Confidence            321   1356677777776663 3322   2355566666666653 3432   134555555555544           


Q ss_pred             ceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhccccccccc
Q 002875          307 VLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVS  386 (872)
Q Consensus       307 ~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  386 (872)
                                   + +|..   .++|+.|++++|+++. +|..   ..+|+.|++++|+++ .+|..+..+++|+.++++
T Consensus       396 -------------~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        396 -------------S-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             -------------C-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence                         2 2211   2579999999999985 4543   346889999999998 689899999999999999


Q ss_pred             CCCC
Q 002875          387 NNPK  390 (872)
Q Consensus       387 ~n~~  390 (872)
                      +|+.
T Consensus       454 ~N~L  457 (788)
T PRK15387        454 GNPL  457 (788)
T ss_pred             CCCC
Confidence            9964

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.78  E-value=3.4e-18  Score=186.91  Aligned_cols=246  Identities=18%  Similarity=0.187  Sum_probs=181.9

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCC-CceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHK-NLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~-niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ....+|.|+||.||++...  ..+|+|.+.....    ....+.+|+..++.+.|+ +|+++.+++......++|+||+.
T Consensus         4 ~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   81 (384)
T COG0515           4 ILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVD   81 (384)
T ss_pred             eEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCC
Confidence            5677899999999999887  8899999975432    356788899999999988 79999999987777899999999


Q ss_pred             CCChHHHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccccccCC-
Q 002875          687 NGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       687 ~g~L~~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~~~~-  759 (872)
                      ++++.+++...     ........++.|++.|++|+|..   +++|||+||+||+++... .++++|||.++....... 
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~  158 (384)
T COG0515          82 GGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGST  158 (384)
T ss_pred             CCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCcc
Confidence            99999887653     56677789999999999999999   899999999999999988 699999999874433221 


Q ss_pred             -------CCcccccccCchhhhcc---cCCcccccchhHHHHHHHHHcCCCCCCCCCCC--CCccccccccccccc-ccc
Q 002875          760 -------SFPAKIAWTESGEFYNA---MKEEMYMDVYGFGEIILEILTNGRLTNAGSSL--QNKPIDGLLGEMYNE-NEV  826 (872)
Q Consensus       760 -------~~~~~~~~~~~~e~~~~---~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~-~~~  826 (872)
                             ....+..++.+||....   .......|+||+|++++++++|..|+......  ..... ..+.....+ ...
T Consensus       159 ~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~  237 (384)
T COG0515         159 SSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTL-KIILELPTPSLAS  237 (384)
T ss_pred             ccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHH-HHHHhcCCccccc
Confidence                   22235556777787765   56788899999999999999999986543321  00000 000000000 000


Q ss_pred             CCCCch-HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSSSSL-QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~~~~-~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...... ......+.+++..|+..+|..|.++.+....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         238 PLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             ccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            000000 1112456688888999999999998876653

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=1.5e-18  Score=166.78  Aligned_cols=181  Identities=13%  Similarity=0.042  Sum_probs=130.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch-----hHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT-----RIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~-----~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ....+++|+||+||.+.. .|..++.+.++....     ....+.+|+++|+++. |++|.+++++    +..++||||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            677899999999997766 778888777764332     1235789999999995 4889999886    3469999999


Q ss_pred             CCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCC-CCCCeeeCCCCCeeEccccccccccccCCC---C
Q 002875          686 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL-KASNIVFDENMEPHLAEFGFKYLTQLADGS---F  761 (872)
Q Consensus       686 ~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdl-k~~Nill~~~~~~ki~dfg~~~~~~~~~~~---~  761 (872)
                      +|.+|.+.+..     ....++.|++++++++|+.   +|+|||| ||+||+++.++.++|+|||++........-   .
T Consensus        81 ~G~~L~~~~~~-----~~~~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L  152 (218)
T PRK12274         81 AGAAMYQRPPR-----GDLAYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLL  152 (218)
T ss_pred             cCccHHhhhhh-----hhHHHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHH
Confidence            99999765432     1245788999999999999   9999999 799999999999999999999743321110   0


Q ss_pred             c--------ccccccCc-----hhhhcccCCc-ccccchhHHHHHHHHHcCCCCCCCC
Q 002875          762 P--------AKIAWTES-----GEFYNAMKEE-MYMDVYGFGEIILEILTNGRLTNAG  805 (872)
Q Consensus       762 ~--------~~~~~~~~-----~e~~~~~~~~-~~~Dv~S~Gvil~el~tg~~p~~~~  805 (872)
                      .        .....|.+     .|.-.-...+ ...+.++-|.-+|.++|++.+.+.+
T Consensus       153 ~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        153 AREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence            0        00000111     1111111111 3347889999999999999887643

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=9e-20  Score=207.46  Aligned_cols=245  Identities=14%  Similarity=0.065  Sum_probs=169.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEee----ccchh---HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIE----WGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~----~~~~~---~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ....+|.|++|.|+.... ...+..+.|...    .....   ...+..|.-+=.+++|||++..+..+++....+-+||
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE  401 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSME  401 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhh
Confidence            567889999997766553 233334444322    21111   1124556666678999999888887777666666699


Q ss_pred             ccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          684 YLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       684 y~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      ||++ ||+..+...  ....+...++.|+..|++|+|..   +|.|||+|++|+++..++.+||+|||.+....-.... 
T Consensus       402 ~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~  477 (601)
T KOG0590|consen  402 YCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKN  477 (601)
T ss_pred             cccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCcceeeccCcchh
Confidence            9999 999999874  56677788999999999999999   9999999999999999999999999988654322111 


Q ss_pred             -----CcccccccCchhhhcccCCc-ccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-ccccccccccccccCCCCchH
Q 002875          761 -----FPAKIAWTESGEFYNAMKEE-MYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-IDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       761 -----~~~~~~~~~~~e~~~~~~~~-~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  833 (872)
                           ...+...|.+||++...++. ...||||.|||+..|++|+.||.......... ......+....  .+......
T Consensus       478 ~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~  555 (601)
T KOG0590|consen  478 IHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIF--EGPNRLLS  555 (601)
T ss_pred             hhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccc--cChHHHHH
Confidence                 11122335557777665554 45799999999999999998887443221110 00000000000  11112234


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      ........++.++++.||.+|.||++|++
T Consensus       556 ~lp~~~~~~~~~~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  556 LLPRETRIIIYRMLQLDPTKRITIEQILN  584 (601)
T ss_pred             hchhhHHHHHHHHccCChhheecHHHHhh
Confidence            45567788999999999999999999985

>PRK10345 hypothetical protein; Provisional

Probab=99.78  E-value=1.3e-18  Score=171.77  Aligned_cols=134  Identities=15%  Similarity=0.170  Sum_probs=105.7

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeecc-chhHHHHHHHHHHhhcc-----CCCCceeEEEEEecCC---eeE-EE
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWG-ATRIKIVSEFITRIGTV-----RHKNLIRLLGFCYNRH---QAY-LL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~-~~~~~~~~~e~~~l~~l-----~H~niv~l~~~~~~~~---~~~-lv  681 (872)
                      ..+.||+|+||.||+ .-.++.. +||++... ....+.+.+|+.+++++     .||||++++|+++++.   ..+ +|
T Consensus         6 ~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I   83 (210)
T PRK10345          6 EQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVI   83 (210)
T ss_pred             CcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEE
Confidence            568899999999996 3334444 79988654 23456789999999999     5799999999999863   434 78


Q ss_pred             Ecc--cCCCChHHHhhCCCCHHHHHHHHHHHHHHH-HHHhhCCCCCcccCCCCCCCeeeCC----CCCeeEcc-cccc
Q 002875          682 YDY--LPNGNLSEKIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDE----NMEPHLAE-FGFK  751 (872)
Q Consensus       682 ~ey--~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl-~~lH~~~~~~i~Hrdlk~~Nill~~----~~~~ki~d-fg~~  751 (872)
                      |||  +++|+|.+++.+.. ..+...++.|++.++ +|||++   +|+||||||+||+++.    +..++|+| ||..
T Consensus        84 ~e~~G~~~~tL~~~l~~~~-~~e~~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~  157 (210)
T PRK10345         84 ADFDGKPSITLTEFAEQCR-YEEDVAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVVCDNIGES  157 (210)
T ss_pred             ecCCCCcchhHHHHHHccc-ccHhHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEEEECCCCc
Confidence            999  66899999997643 222246678888888 999999   9999999999999974    34799999 5543

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.76  E-value=1e-17  Score=180.06  Aligned_cols=247  Identities=13%  Similarity=0.068  Sum_probs=171.6

Q ss_pred             chhhhccCCCCCceeeeecCCC--cEEEEEEeeccch-hHHHHHHHHHHhhccCC----CCceeEEEEE-ecCCeeEEEE
Q 002875          611 TECEEAARPQSAAGCKAVLPTG--ITVSVKKIEWGAT-RIKIVSEFITRIGTVRH----KNLIRLLGFC-YNRHQAYLLY  682 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g--~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H----~niv~l~~~~-~~~~~~~lv~  682 (872)
                      .....||+|+||.||++...+.  +.+|+|....... ....+..|+.++..+.+    +++.++++.. ..+.+.|+||
T Consensus        21 ~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM  100 (322)
T KOG1164|consen   21 KLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVM  100 (322)
T ss_pred             EEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEE
Confidence            3889999999999999996553  5788888764322 12266778888887763    6888999888 5778899999


Q ss_pred             cccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-----CCeeEcccccccc
Q 002875          683 DYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-----MEPHLAEFGFKYL  753 (872)
Q Consensus       683 ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-----~~~ki~dfg~~~~  753 (872)
                      +.+ |.+|.++...    ..+..+..+|+.|++.+|+++|+.   +++||||||+|+++...     ..+.+.|||+++.
T Consensus       101 ~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~  176 (322)
T KOG1164|consen  101 SLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARR  176 (322)
T ss_pred             ecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEecCCCcc
Confidence            988 6799997743    346788899999999999999999   99999999999999865     3599999999982


Q ss_pred             cc--ccCC-------C---CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccc
Q 002875          754 TQ--LADG-------S---FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMY  821 (872)
Q Consensus       754 ~~--~~~~-------~---~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~  821 (872)
                      ..  ....       .   ...++..|++.....+...+.+.|+||++-++.|+..|..||...........   +.+..
T Consensus       177 ~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~---~~~~~  253 (322)
T KOG1164|consen  177 FKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSK---FEKDP  253 (322)
T ss_pred             ccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHH---HHHHh
Confidence            21  1110       0   11145557777777777888899999999999999999988754332211110   00000


Q ss_pred             cccccC-CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          822 NENEVG-SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       822 ~~~~~~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ...... .....+.   .+.++...+-..+..++|.-..+.+.++..
T Consensus       254 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~  297 (322)
T KOG1164|consen  254 RKLLTDRFGDLKPE---EFAKILEYIDSLDYEDKPDYEKLAELLKDV  297 (322)
T ss_pred             hhhccccccCCChH---HHHHHHHHhhccCCcCCCCHHHHHHHHHHH
Confidence            000000 0111122   233333334446889999988887776543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3.1e-18  Score=198.50  Aligned_cols=247  Identities=25%  Similarity=0.417  Sum_probs=170.3

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      ...+.|+++++.++. +|..+.  ++|+.|+|++|+|.. +|..+.  .+|++|++++|.++ .+|..+.  .+|+.|+|
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            457899999999875 465554  579999999999985 555443  58999999999988 4676554  47999999


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCccc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS  177 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~  177 (872)
                      ++|.+. .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.+.+ +|..+.  ++|+.|++++|.+.. 
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence            999987 5676664  589999999999874 566553  478888888887764 443332  367778888888774 


Q ss_pred             CCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCC
Q 002875          178 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL  257 (872)
Q Consensus       178 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  257 (872)
                      +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++.. +|..+.  
T Consensus       319 LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--  387 (754)
T PRK15370        319 LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--  387 (754)
T ss_pred             CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--
Confidence            444332  577778888887775 343332  57788888888776 3555442  577788888877773 444433  


Q ss_pred             CCcceeecccccccccCCccC----CCCCCCcEEecCCCeee
Q 002875          258 PSLEILFIWNNYFSGSLPENL----GRNSKLRWVDVSTNNFN  295 (872)
Q Consensus       258 ~~L~~L~l~~n~l~~~~p~~~----~~~~~L~~L~ls~n~l~  295 (872)
                      .+|+.|++++|++. .+|..+    ...+.+..+++.+|.+.
T Consensus       388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            35777777777776 344432    23355666666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=3.7e-18  Score=197.90  Aligned_cols=202  Identities=24%  Similarity=0.429  Sum_probs=108.0

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCc
Q 002875           43 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLA  122 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  122 (872)
                      +...|+++++.++. +|..+.  ++|+.|+|++|.++ .+|..+.  .+|++|++++|.++. +|..+.  .+|+.|+|+
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence            45667777666663 444332  45667777777666 3454443  467777777776653 454432  356666666


Q ss_pred             cCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccC
Q 002875          123 GNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV  202 (872)
Q Consensus       123 ~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  202 (872)
                      +|.+. .+|..+.                          ++|+.|++++|++. .+|..+.  ++|+.|++++|+++.. 
T Consensus       250 ~N~L~-~LP~~l~--------------------------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-  298 (754)
T PRK15370        250 INRIT-ELPERLP--------------------------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-  298 (754)
T ss_pred             CCccC-cCChhHh--------------------------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-
Confidence            66664 3333322                          24555555555554 2344332  3555555655555532 


Q ss_pred             CcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCC
Q 002875          203 PWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNS  282 (872)
Q Consensus       203 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~  282 (872)
                      |..+.  ++|+.|++++|.++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|..+.  +
T Consensus       299 P~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~  367 (754)
T PRK15370        299 PAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--P  367 (754)
T ss_pred             cccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--C
Confidence            22221  245566666666653 333222  456666666666653 444332  46666666666665 3444332  3


Q ss_pred             CCcEEecCCCeee
Q 002875          283 KLRWVDVSTNNFN  295 (872)
Q Consensus       283 ~L~~L~ls~n~l~  295 (872)
                      +|+.|++++|.+.
T Consensus       368 ~L~~LdLs~N~Lt  380 (754)
T PRK15370        368 TITTLDVSRNALT  380 (754)
T ss_pred             CcCEEECCCCcCC
Confidence            5666666666665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=7.3e-18  Score=190.11  Aligned_cols=238  Identities=21%  Similarity=0.234  Sum_probs=166.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccc--hhHHHH---HHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA--TRIKIV---SEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~--~~~~~~---~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|.+.|=+|+||+.+.|. |+||++-+..  ...+.+   .+|++ ...++|||++++.-+-..+...|||=+|..
T Consensus        27 ~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRqyvk  104 (1431)
T KOG1240|consen   27 YVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQYVK  104 (1431)
T ss_pred             eecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHHHHh
Confidence            6788999999999999999998 8999885432  223333   34444 456789999999888778888999999997


Q ss_pred             CCChHHHhhCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---C--
Q 002875          687 NGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---G--  759 (872)
Q Consensus       687 ~g~L~~~l~~~~--~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~--  759 (872)
                      + +|.|.+..+.  ...+++-|+.|++.|+.-+|..   +|.|+|||.+|||++.=.++.++||.--+..-..+   .  
T Consensus       105 h-nLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf  180 (1431)
T KOG1240|consen  105 H-NLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADF  180 (1431)
T ss_pred             h-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhcccccCCccCCCCCcccc
Confidence            6 9999987643  4567778999999999999999   99999999999999999999999998654321110   0  


Q ss_pred             -----CCcccccccCchhhhccc----------CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc
Q 002875          760 -----SFPAKIAWTESGEFYNAM----------KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN  824 (872)
Q Consensus       760 -----~~~~~~~~~~~~e~~~~~----------~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  824 (872)
                           +....++|-+|+.++.+.          ..+++.||||.|||++|+++-++|.+.-...-.  +  ..+...++.
T Consensus       181 ~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~a--Y--r~~~~~~~e  256 (1431)
T KOG1240|consen  181 TFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLA--Y--RSGNADDPE  256 (1431)
T ss_pred             eEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHh--H--hccCccCHH
Confidence                 111234544554333311          146678999999999999987666542110000  0  000000000


Q ss_pred             ccCCCCchHHH--HHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          825 EVGSSSSLQDE--IKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       825 ~~~~~~~~~~~--~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                            ..-+.  -..++.++..|++.||++|-++++.++.=.
T Consensus       257 ------~~Le~Ied~~~Rnlil~Mi~rdPs~RlSAedyL~~yr  293 (1431)
T KOG1240|consen  257 ------QLLEKIEDVSLRNLILSMIQRDPSKRLSAEDYLQKYR  293 (1431)
T ss_pred             ------HHHHhCcCccHHHHHHHHHccCchhccCHHHHHHhhh
Confidence                  00000  024667888899999999999999887643

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.71  E-value=4.8e-18  Score=182.93  Aligned_cols=182  Identities=16%  Similarity=0.134  Sum_probs=145.0

Q ss_pred             ccCCCCCceeeee----cCCCcEEEEEEeeccchh---HHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCC
Q 002875          616 AARPQSAAGCKAV----LPTGITVSVKKIEWGATR---IKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       616 ~g~g~~~~v~~~~----~~~g~~vavK~~~~~~~~---~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +|.|.||+|+.+.    .+.|..+|+|.+++....   ......|..++..++ ||.+|+++-.++.+...+++++|..+
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rg   81 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRG   81 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhccc
Confidence            6889999998543    356778899988653211   112334556677776 99999999999999999999999999


Q ss_pred             CChHHHhhCCCCHH--HHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccc
Q 002875          688 GNLSEKIRTKRDWA--AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI  765 (872)
Q Consensus       688 g~L~~~l~~~~~~~--~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~  765 (872)
                      |++...+.......  ....+...++-|++++|..   +|+|||+|++||+++.+|.+|+.|||+++..-.....  ++.
T Consensus        82 g~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~--cgt  156 (612)
T KOG0603|consen   82 GDLFTRLSKEVMFDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA--CGT  156 (612)
T ss_pred             chhhhccccCCchHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHhhhhc--ccc
Confidence            99999988765443  3456677889999999999   9999999999999999999999999998764333222  445


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCC
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA  804 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~  804 (872)
                      ..|++||+.+  .....+|.|||||+++||+||..||..
T Consensus       157 ~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  157 YEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             hhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence            5578888887  456678999999999999999999875

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.70  E-value=3.2e-17  Score=154.64  Aligned_cols=192  Identities=10%  Similarity=0.034  Sum_probs=141.8

Q ss_pred             cchhhhccCCCCCceeeee-cCCCcEEEEEEeeccchhHHHHHHHHHHhhccCC-CCceeEEEEEecCCeeEEEEcccCC
Q 002875          610 STECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGATRIKIVSEFITRIGTVRH-KNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      |.....||.|+||.+|.|. ..+|+.||||.=+..... -.+.-|..+.+.++| .-|-.+.-|..+.++-.+|||.. |
T Consensus        17 y~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~h-pqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLL-G   94 (341)
T KOG1163|consen   17 YKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKH-PQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLL-G   94 (341)
T ss_pred             eEEEEeecCCchhheeeeeeccCCceEEEEeecccCCC-cchhHHHHHHHHhccCCCCchhhhhccccccceeeeecc-C
Confidence            4488999999999999998 588999999986543332 234455677777776 44555566667778889999988 7


Q ss_pred             CChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEccccccccccccCCC-
Q 002875          688 GNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       688 g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      .||++...-   ..+..+.+-++-|++.-++|+|.+   +.|||||||+|.|..-   ...+.++|||+++.+.+..+. 
T Consensus        95 PsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~  171 (341)
T KOG1163|consen   95 PSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQ  171 (341)
T ss_pred             ccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccchhhhccccccc
Confidence            799887753   345567788899999999999999   9999999999999863   345889999999865443221 


Q ss_pred             --------CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCC
Q 002875          761 --------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGS  806 (872)
Q Consensus       761 --------~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~  806 (872)
                              .-++++.|++-....+...+...|+=|+|-++...--|..||.+-.
T Consensus       172 HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglk  225 (341)
T KOG1163|consen  172 HIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLK  225 (341)
T ss_pred             cCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccc
Confidence                    1224444544333333445666799999988888888888887543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.70  E-value=1.2e-16  Score=157.82  Aligned_cols=190  Identities=11%  Similarity=0.047  Sum_probs=146.7

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccchhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGATRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ...+||+|.||+.+.|+ +-++++||||.=. .+.+.-.+..|.+..+.+. -+.|-..+-|-.+.-+-.||+|.. |.|
T Consensus        32 VGkKIGeGsFG~lf~G~Nl~nne~VAIKfEP-rkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-GPS  109 (449)
T KOG1165|consen   32 VGKKIGEGSFGVLFLGKNLYNNEPVAIKFEP-RKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-GPS  109 (449)
T ss_pred             eccccccCcceeeecccccccCceEEEEecc-ccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-CcC
Confidence            88999999999999998 5789999999743 2333334555666666554 588888877777777889999988 668


Q ss_pred             hHHHh---hCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-----CCeeEccccccccccccCCC-
Q 002875          690 LSEKI---RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-----MEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       690 L~~~l---~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-----~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      |+|..   .++.+..+...+|+|++.-++|+|++   ..|.|||||+|.||..-     ..+.++|||+|+.+.+..+. 
T Consensus       110 LEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~Tkq  186 (449)
T KOG1165|consen  110 LEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQ  186 (449)
T ss_pred             HHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccc
Confidence            77765   44567788889999999999999999   99999999999999744     35889999999987654322 


Q ss_pred             --------CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCC
Q 002875          761 --------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGS  806 (872)
Q Consensus       761 --------~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~  806 (872)
                              ...+++.|++-....+.+.+...|.=|+|=++...+-|..||.+-.
T Consensus       187 HIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLK  240 (449)
T KOG1165|consen  187 HIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  240 (449)
T ss_pred             cCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccccc
Confidence                    1224555555444455667777899999988888889999988543

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.70  E-value=5.6e-17  Score=163.79  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=113.6

Q ss_pred             hhccCCCCCceeeeecCCCcEEEEEEeeccch---------hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          614 EEAARPQSAAGCKAVLPTGITVSVKKIEWGAT---------RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~---------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      +.+|+|++|.||+|.. +|..|+||+......         ....+.+|++.+..++|++|.....++.+.+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            4689999999999987 788899998653211         134577899999999999998888887777888999999


Q ss_pred             cCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          685 LPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       685 ~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      ++|++|.+++.....  ++..++.+++.+++++|+.   +++|||++|+||+++ ++.++++|||.+..
T Consensus        81 ~~G~~L~~~~~~~~~--~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         81 IEGEPLKDLINSNGM--EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             eCCcCHHHHHHhccH--HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            999999999875433  7789999999999999999   999999999999999 78899999998754

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=6.9e-17  Score=162.97  Aligned_cols=192  Identities=20%  Similarity=0.254  Sum_probs=129.7

Q ss_pred             CCCCceeEEEEEec---------------------------CCeeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHH
Q 002875          661 RHKNLIRLLGFCYN---------------------------RHQAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVAR  712 (872)
Q Consensus       661 ~H~niv~l~~~~~~---------------------------~~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~  712 (872)
                      +|||||++.++|.+                           +...|+||.-++. +|++++.. ..+...+.-++.|+++
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~~s~r~~~~~laQlLE  352 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRHRSYRTGRVILAQLLE  352 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCCCchHHHHHHHHHHHH
Confidence            59999999987743                           1256999998875 99999864 3455566678899999


Q ss_pred             HHHHHhhCCCCCcccCCCCCCCeee--CCCC--CeeEccccccccccccC-----CC---CcccccccCchhhhcccC--
Q 002875          713 GLCFLHHDCYPAIPHGDLKASNIVF--DENM--EPHLAEFGFKYLTQLAD-----GS---FPAKIAWTESGEFYNAMK--  778 (872)
Q Consensus       713 gl~~lH~~~~~~i~Hrdlk~~Nill--~~~~--~~ki~dfg~~~~~~~~~-----~~---~~~~~~~~~~~e~~~~~~--  778 (872)
                      |+.|||.+   +|.|||+|+.|||+  |+|+  ...|+|||++-..+...     .+   ..++-.-.++||+....+  
T Consensus       353 av~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp  429 (598)
T KOG4158|consen  353 AVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGP  429 (598)
T ss_pred             HHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCC
Confidence            99999999   99999999999998  4444  47899999874332211     11   112333345667654432  


Q ss_pred             ----CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCC
Q 002875          779 ----EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDR  854 (872)
Q Consensus       779 ----~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R  854 (872)
                          .-.|+|.|+.|.+.||+++...||+......-    +  ..-|++...+..+  +.....+.+++...++.||++|
T Consensus       430 ~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L----~--~r~Yqe~qLPalp--~~vpp~~rqlV~~lL~r~pskR  501 (598)
T KOG4158|consen  430 NAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLL----D--TRTYQESQLPALP--SRVPPVARQLVFDLLKRDPSKR  501 (598)
T ss_pred             ceeeccchhhhhhhhhhHHHHhccCCcccccchhee----c--hhhhhhhhCCCCc--ccCChHHHHHHHHHhcCCcccc
Confidence                12357999999999999999999985221110    0  1113322222111  2223446677778899999999


Q ss_pred             CCHHHHHHHH
Q 002875          855 PSMEEALKLL  864 (872)
Q Consensus       855 pt~~~v~~~L  864 (872)
                      |+.+-+.+.|
T Consensus       502 vsp~iAANvl  511 (598)
T KOG4158|consen  502 VSPNIAANVL  511 (598)
T ss_pred             CCccHHHhHH
Confidence            9976655544

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.70  E-value=6.8e-17  Score=160.93  Aligned_cols=132  Identities=13%  Similarity=0.146  Sum_probs=106.3

Q ss_pred             chhhhccCCCCCceeeeecCCCcEEEEEEeeccch-----------------------hHHHHHHHHHHhhccCCC--Cc
Q 002875          611 TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT-----------------------RIKIVSEFITRIGTVRHK--NL  665 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~-----------------------~~~~~~~e~~~l~~l~H~--ni  665 (872)
                      ...+.||+|+||.||+|..++|+.||||++..+..                       ....+..|+..+.++.|+  .+
T Consensus        18 ~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v   97 (198)
T cd05144          18 SLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPV   97 (198)
T ss_pred             hcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCC
Confidence            36788999999999999998999999998754321                       012356788888888887  44


Q ss_pred             eeEEEEEecCCeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeE
Q 002875          666 IRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL  745 (872)
Q Consensus       666 v~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki  745 (872)
                      .+.++.    ...++||||+++++|.+....    .....++.+++.++.++|+.   +|+||||||+||++++++.++|
T Consensus        98 ~~~~~~----~~~~lv~e~~~g~~L~~~~~~----~~~~~~~~~i~~~l~~lh~~---gi~H~Dl~p~Nill~~~~~~~l  166 (198)
T cd05144          98 PKPIDW----NRHAVVMEYIDGVELYRVRVL----EDPEEVLDEILEEIVKAYKH---GIIHGDLSEFNILVDDDEKIYI  166 (198)
T ss_pred             Cceeec----CCceEEEEEeCCcchhhcccc----ccHHHHHHHHHHHHHHHHHC---CCCcCCCCcccEEEcCCCcEEE
Confidence            455442    355899999999999876431    33457889999999999998   9999999999999999999999


Q ss_pred             cccccccc
Q 002875          746 AEFGFKYL  753 (872)
Q Consensus       746 ~dfg~~~~  753 (872)
                      +|||.+..
T Consensus       167 iDfg~~~~  174 (198)
T cd05144         167 IDWPQMVS  174 (198)
T ss_pred             EECCcccc
Confidence            99999854

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>smart00090 RIO RIO-like kinase

Probab=99.70  E-value=6.7e-17  Score=163.99  Aligned_cols=136  Identities=12%  Similarity=0.128  Sum_probs=106.6

Q ss_pred             cchhhhccCCCCCceeeee--cCCCcEEEEEEeeccch-------------------------hHHHHHHHHHHhhccCC
Q 002875          610 STECEEAARPQSAAGCKAV--LPTGITVSVKKIEWGAT-------------------------RIKIVSEFITRIGTVRH  662 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~--~~~g~~vavK~~~~~~~-------------------------~~~~~~~e~~~l~~l~H  662 (872)
                      +...+.+|+|++|.||+|+  ..+|+.||||.+.....                         ....+..|+..+.++.|
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~  109 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE  109 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3477899999999999998  67899999999874321                         01235679999999976


Q ss_pred             CC--ceeEEEEEecCCeeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCC-cccCCCCCCCeee
Q 002875          663 KN--LIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPA-IPHGDLKASNIVF  737 (872)
Q Consensus       663 ~n--iv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~-i~Hrdlk~~Nill  737 (872)
                      ..  +.+.+++    ...++||||++++++.......  ....+...++.|++.+++|+|..   + |+|||+||+||++
T Consensus       110 ~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Dikp~NIli  182 (237)
T smart00090      110 AGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKE---GELVHGDLSEYNILV  182 (237)
T ss_pred             cCCCCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhc---CCEEeCCCChhhEEE
Confidence            33  3444443    2358999999998887765332  23344568999999999999999   8 9999999999999


Q ss_pred             CCCCCeeEcccccccc
Q 002875          738 DENMEPHLAEFGFKYL  753 (872)
Q Consensus       738 ~~~~~~ki~dfg~~~~  753 (872)
                      + ++.++++|||.+..
T Consensus       183 ~-~~~i~LiDFg~a~~  197 (237)
T smart00090      183 H-DGKVVIIDVSQSVE  197 (237)
T ss_pred             E-CCCEEEEEChhhhc
Confidence            9 78999999998764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=6.4e-19  Score=190.66  Aligned_cols=272  Identities=22%  Similarity=0.229  Sum_probs=138.3

Q ss_pred             EEECCCCCCc-ccCCccccCCCCCCEEECcCCcCcc----cCCccccCCCCCcEEECcCCcCcc------ccCccccCCC
Q 002875           22 DLNLSHNSFS-GQFPVEIFNLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFSNSFSG------SVPAEISQLE   90 (872)
Q Consensus        22 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~LdL~~n~l~~------~~p~~~~~L~   90 (872)
                      +|+|..+.++ ......|..+.+|++|+++++.+..    .++..+...+.|+.|+++++.+.+      .++..+.+++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3555566555 2333444556666667776666532    133345555666666666665541      2233455566


Q ss_pred             CCCEEEccCCcccccCCcccCCCCC---CcEeeCccCcCCc----cCCccCCCC-CCCCEEEccCccCccc----CCccc
Q 002875           91 HLKVLNLAGSYFSGPIPSQFGSFKS---LEFLHLAGNLLND----QIPAELGML-KTVTHMEIGYNFYQGN----IPWQL  158 (872)
Q Consensus        91 ~L~~L~L~~n~~~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~l~~L-~~L~~L~l~~n~~~~~----~p~~~  158 (872)
                      +|++|++++|.+....+..|..+.+   |++|++++|++.+    .+...+..+ ++|+.|++++|.+.+.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            6666666666665444444444444   6666666666542    122223344 5555555555554421    22234


Q ss_pred             cCCCCCcEEEeecCCCccc----CCccCcCCCCCCEEEccCCCCcccC----CcccccCCCCCEEeCcCCCCcCcCCccc
Q 002875          159 GNMSEVQYLDIAGANLSGS----IPKELSNLTKLESLFLFRNQLAGQV----PWEFSRVTTLKSLDLSDNRLSGPIPESF  230 (872)
Q Consensus       159 ~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~  230 (872)
                      ..+.+|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+..    ...+..+++|++|++++|.++......+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            4455666666666666531    2223344456666666666654321    1223445566666666666553211111


Q ss_pred             c-----CCCCCCEEEcccccCCC----CCCccccCCCCcceeeccccccccc----CCccCCCC-CCCcEEecCCCe
Q 002875          231 A-----DLKNLRLLSLMYNEMSG----TVPESLVQLPSLEILFIWNNYFSGS----LPENLGRN-SKLRWVDVSTNN  293 (872)
Q Consensus       231 ~-----~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~~-~~L~~L~ls~n~  293 (872)
                      .     ..+.|+.|++++|.++.    .+...+..+++|+++++++|.+...    +...+... +.++.+++.+|.
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            1     12566666666666541    1222334445666666666666532    22222233 455555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=4.6e-19  Score=158.15  Aligned_cols=158  Identities=32%  Similarity=0.579  Sum_probs=101.7

Q ss_pred             cccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCC
Q 002875           37 EIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSL  116 (872)
Q Consensus        37 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L  116 (872)
                      .+.++.+.+.|-||||+++ ..|..+..+.+|++|++++|++. .+|.+++.++.|+.|++.-|++. +.|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3556777788888888887 45556888888888888888887 67888888888888888888876 688888888888


Q ss_pred             cEeeCccCcCCc-cCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccC
Q 002875          117 EFLHLAGNLLND-QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR  195 (872)
Q Consensus       117 ~~L~L~~n~l~~-~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~  195 (872)
                      ++|||..|++.. .+|..|-.++.|+-|++++|.+. .+|..++++++|+.|.+..|.+. .+|.+++.++.|++|.+.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            888888887743 34444444444444444444433 23334444444444444444443 3444444444444444444


Q ss_pred             CCCc
Q 002875          196 NQLA  199 (872)
Q Consensus       196 n~l~  199 (872)
                      |.++
T Consensus       183 nrl~  186 (264)
T KOG0617|consen  183 NRLT  186 (264)
T ss_pred             ceee
Confidence            4443

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.68  E-value=1.2e-16  Score=159.82  Aligned_cols=129  Identities=19%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             hccCCCCCceeeeecCCCcEEEEEEeeccc---------hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          615 EAARPQSAAGCKAVLPTGITVSVKKIEWGA---------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      .||+|++|.||+|. .+|..|+||+.....         ...+.+.+|++++.+++|+++.....++...+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~-~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGD-FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEee-cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            47999999999998 478899999864321         11355678999999999988766555666667789999999


Q ss_pred             CCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          686 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       686 ~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      +|++|.+.+.....     .++.+++.+++++|+.   +++|||+||+||+++ ++.+++.|||+++.
T Consensus        80 ~g~~l~~~~~~~~~-----~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        80 EGKPLKDVIEEGND-----ELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             CCccHHHHHhhcHH-----HHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            99999998754321     7899999999999999   999999999999999 78999999998754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.67  E-value=1.1e-16  Score=162.82  Aligned_cols=224  Identities=16%  Similarity=0.137  Sum_probs=136.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccC----------CCCceeEEEEEe---
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVR----------HKNLIRLLGFCY---  673 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~----------H~niv~l~~~~~---  673 (872)
                      ..+.||.|+++.||.++. .+|+.+|||+.-...    ...+.+.+|.-....+.          |-.++--++...   
T Consensus        16 ~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~~   95 (288)
T PF14531_consen   16 RGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIPG   95 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEETT
T ss_pred             EccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEcC
Confidence            567899999999999996 679999999875422    23455666554444322          212222222211   


Q ss_pred             ------cC---C-----eeEEEEcccCCCChHHHhhC----CC-----CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCC
Q 002875          674 ------NR---H-----QAYLLYDYLPNGNLSEKIRT----KR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL  730 (872)
Q Consensus       674 ------~~---~-----~~~lv~ey~~~g~L~~~l~~----~~-----~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdl  730 (872)
                            ..   .     ..+++|+-+ .+||.+.+..    ..     ....+..+..|+++.++++|+.   +++|+||
T Consensus        96 ~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHgdi  171 (288)
T PF14531_consen   96 KPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHGDI  171 (288)
T ss_dssp             S-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEEST-
T ss_pred             CCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEeccc
Confidence                  11   1     236778877 4699887642    11     2345567789999999999999   9999999


Q ss_pred             CCCCeeeCCCCCeeEccccccccccccCCCCcccccccCchhhhcc--------cCCcccccchhHHHHHHHHHcCCCCC
Q 002875          731 KASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA--------MKEEMYMDVYGFGEIILEILTNGRLT  802 (872)
Q Consensus       731 k~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~--------~~~~~~~Dv~S~Gvil~el~tg~~p~  802 (872)
                      ||+|++++.+|.+.++||+-.......... ......++|||....        ..++.+.|.|++|+++|.|..|..||
T Consensus       172 ~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~-~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf  250 (288)
T PF14531_consen  172 KPENFLLDQDGGVFLGDFSSLVRAGTRYRC-SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPF  250 (288)
T ss_dssp             SGGGEEE-TTS-EEE--GGGEEETTEEEEG-GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-ST
T ss_pred             ceeeEEEcCCCCEEEcChHHHeecCceeec-cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCC
Confidence            999999999999999999876543322111 112234667775533        24677789999999999999999998


Q ss_pred             CCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCC
Q 002875          803 NAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDR  854 (872)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R  854 (872)
                      ...........              ....+.+..+.+..++...|+.+|++|
T Consensus       251 ~~~~~~~~~~~--------------~f~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  251 GLSSPEADPEW--------------DFSRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             CCCGGGSTSGG--------------GGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             CCCCccccccc--------------cchhcCCcCHHHHHHHHHHccCCcccC
Confidence            74322111000              011122344567788889999999988

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=9.5e-19  Score=156.14  Aligned_cols=163  Identities=28%  Similarity=0.490  Sum_probs=148.0

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      +..+++|.||||+++ ..|..+..+.+|+.|++++|+|. .+|..+++++.|+.|+++-|++. ++|..|+.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            578999999999998 55667999999999999999997 67889999999999999999997 8999999999999999


Q ss_pred             ccCCcccc-cCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCc
Q 002875           97 LAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS  175 (872)
Q Consensus        97 L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~  175 (872)
                      |.+|++.. .+|..|-.|+.|+.|+|+.|.+ ..+|.+++.|++|+.|.+..|.+. .+|..++.++.|+.|.+++|++.
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            99998864 5799999999999999999998 588999999999999999999776 58999999999999999999998


Q ss_pred             ccCCccCcCC
Q 002875          176 GSIPKELSNL  185 (872)
Q Consensus       176 ~~~p~~l~~l  185 (872)
                       .+|.+++.+
T Consensus       187 -vlppel~~l  195 (264)
T KOG0617|consen  187 -VLPPELANL  195 (264)
T ss_pred             -ecChhhhhh
Confidence             677666653

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.66  E-value=3.1e-16  Score=180.25  Aligned_cols=131  Identities=17%  Similarity=0.199  Sum_probs=109.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEe-ecc--c------hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKI-EWG--A------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~-~~~--~------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|..... .+++|+. ...  .      ...+.+.+|++++++++|++++....++.+++..++||
T Consensus       337 ~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~  415 (535)
T PRK09605        337 PDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVM  415 (535)
T ss_pred             ccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEE
Confidence            578899999999999987544 3444432 211  0      12356788999999999999999888888877889999


Q ss_pred             cccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          683 DYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       683 ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      ||+++++|.+++.      ....++.|++++++|||+.   +|+|||+||+||++ +++.++|+|||+++.
T Consensus       416 E~~~g~~L~~~l~------~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        416 EYIGGKDLKDVLE------GNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             EecCCCcHHHHHH------HHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            9999999999875      4577899999999999999   99999999999999 577899999999864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=7.7e-18  Score=182.23  Aligned_cols=254  Identities=22%  Similarity=0.249  Sum_probs=192.6

Q ss_pred             CCCCcEEECCCCCCccc----CCccccCCCCCCEEECcCCcCcc------cCCccccCCCCCcEEECcCCcCccccCccc
Q 002875           17 FNELVDLNLSHNSFSGQ----FPVEIFNLTSLISLDISRNNFSG------HFPGGIQSLRNLLVLDAFSNSFSGSVPAEI   86 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~i~~------~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~   86 (872)
                      +..|+.|+++++.++..    ++..+...+.|++|+++++.+.+      .++..+..+++|+.|++++|.+....+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            56699999999998542    45556788889999999998762      334567789999999999999986666666


Q ss_pred             cCCCC---CCEEEccCCcccc----cCCcccCCC-CCCcEeeCccCcCCc----cCCccCCCCCCCCEEEccCccCccc-
Q 002875           87 SQLEH---LKVLNLAGSYFSG----PIPSQFGSF-KSLEFLHLAGNLLND----QIPAELGMLKTVTHMEIGYNFYQGN-  153 (872)
Q Consensus        87 ~~L~~---L~~L~L~~n~~~~----~~p~~~~~l-~~L~~L~L~~n~l~~----~~p~~l~~L~~L~~L~l~~n~~~~~-  153 (872)
                      ..+.+   |++|++++|.+..    .+...+..+ ++|+.|++++|.+++    .++..+..+++|+.|++++|.+.+. 
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            66655   9999999998873    234456677 899999999999874    2344567788999999999987742 


Q ss_pred             ---CCccccCCCCCcEEEeecCCCccc----CCccCcCCCCCCEEEccCCCCcccCCcccc-----cCCCCCEEeCcCCC
Q 002875          154 ---IPWQLGNMSEVQYLDIAGANLSGS----IPKELSNLTKLESLFLFRNQLAGQVPWEFS-----RVTTLKSLDLSDNR  221 (872)
Q Consensus       154 ---~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~  221 (872)
                         ++..+..+++|++|++++|.+.+.    +...+..+++|++|++++|.+++.....+.     ..+.|++|++++|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence               333455667999999999998643    334566788999999999998753222222     24799999999999


Q ss_pred             CcC----cCCccccCCCCCCEEEcccccCCCC----CCccccCC-CCcceeecccccc
Q 002875          222 LSG----PIPESFADLKNLRLLSLMYNEMSGT----VPESLVQL-PSLEILFIWNNYF  270 (872)
Q Consensus       222 l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~l~~n~l  270 (872)
                      ++.    .+...+..+++|+.+++++|.+...    ....+... +.|+.+++.+|.+
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            872    2344566778999999999999854    33334444 6899999888753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.60  E-value=1.4e-15  Score=150.45  Aligned_cols=133  Identities=14%  Similarity=0.145  Sum_probs=96.4

Q ss_pred             hhccCCCCCceeeeecCCCcEEEEEEeeccchh----HHH---------------------HHHHHHHhhccCCCC--ce
Q 002875          614 EEAARPQSAAGCKAVLPTGITVSVKKIEWGATR----IKI---------------------VSEFITRIGTVRHKN--LI  666 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~----~~~---------------------~~~e~~~l~~l~H~n--iv  666 (872)
                      +.+|+|+||.||+|...+|+.||||++......    ...                     ...|.+.+.++.+..  +.
T Consensus         3 ~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~   82 (187)
T cd05119           3 GPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVP   82 (187)
T ss_pred             cccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCCC
Confidence            568999999999999889999999998653211    111                     134555555554432  44


Q ss_pred             eEEEEEecCCeeEEEEcccCCCChHHH-hhCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCee
Q 002875          667 RLLGFCYNRHQAYLLYDYLPNGNLSEK-IRTKRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPH  744 (872)
Q Consensus       667 ~l~~~~~~~~~~~lv~ey~~~g~L~~~-l~~~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~k  744 (872)
                      +.+++    ...++||||+++|.+... +.......+...++.+++.++.++|. .   +|+|||+||+||+++ ++.++
T Consensus        83 ~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~Nili~-~~~~~  154 (187)
T cd05119          83 KPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREA---GLVHGDLSEYNILVD-DGKVY  154 (187)
T ss_pred             ceEec----CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhcc---CcCcCCCChhhEEEE-CCcEE
Confidence            44443    245899999999544321 11111115567899999999999999 7   999999999999999 88999


Q ss_pred             Eccccccccc
Q 002875          745 LAEFGFKYLT  754 (872)
Q Consensus       745 i~dfg~~~~~  754 (872)
                      ++|||.+...
T Consensus       155 liDfg~a~~~  164 (187)
T cd05119         155 IIDVPQAVEI  164 (187)
T ss_pred             EEECcccccc
Confidence            9999998543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.59  E-value=5.4e-15  Score=140.88  Aligned_cols=134  Identities=15%  Similarity=0.071  Sum_probs=115.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCC--CCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRH--KNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H--~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.+|.|.++.||++...+ ..++||....... ...+.+|+..+++++|  .++.++++++...+..+++|||+++++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK-GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             cceecccccccceEEEEecC-CeEEEEecCCCCc-hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            35678999999999999854 7899999865433 4578889999999987  589999999888889999999999988


Q ss_pred             hHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          690 LSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       690 L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      +...     +......++.+++++++++|.....+++|+|+||+||+++..+.+++.|||.+.
T Consensus        80 ~~~~-----~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~  137 (155)
T cd05120          80 LDEV-----SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAG  137 (155)
T ss_pred             cccC-----CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEeccccc
Confidence            8765     566777889999999999998755689999999999999998999999999875

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=9.4e-15  Score=169.29  Aligned_cols=186  Identities=17%  Similarity=0.166  Sum_probs=138.4

Q ss_pred             chhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccC---CCCceeEEEEEecCCeeEEEEcccCC
Q 002875          611 TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      .+..++|+|+||.||+|+..+|+.||+|+=+....=  +|.==.+++.|++   -+-|..+..++.-.+.-++|+||.+-
T Consensus       701 ~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~W--EfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~  778 (974)
T KOG1166|consen  701 CISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPW--EFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSPY  778 (974)
T ss_pred             EEEeeeccccceEEEEeecCCCcEEEEEeecCCCce--eeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeecccc
Confidence            378899999999999999988999999986542110  0000012233333   23344555555566778999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-------CCCCeeEccccccccccccC
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-------ENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-------~~~~~ki~dfg~~~~~~~~~  758 (872)
                      |+|.+++..  ..+|.-...++.|+++-+++||..   +|||+||||.|.+|.       +...++|+|||.+..+....
T Consensus       779 Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp  855 (974)
T KOG1166|consen  779 GTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFP  855 (974)
T ss_pred             ccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcC
Confidence            999999975  457778889999999999999999   999999999999993       23459999999886543322


Q ss_pred             CC--Ccc--cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCC
Q 002875          759 GS--FPA--KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL  801 (872)
Q Consensus       759 ~~--~~~--~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p  801 (872)
                      ..  +.+  .+....+.|...+..+++.+|.|.++.+++-|+.|+..
T Consensus       856 ~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  856 DGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             CCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence            21  111  22234456888888999999999999999999998753

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2.8e-15  Score=158.65  Aligned_cols=167  Identities=18%  Similarity=0.267  Sum_probs=121.0

Q ss_pred             eeEEEEcccCCCChHHHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      +.|+.|++|...+|.+|+.++     .++.....++.|++.|++|   +   +.+|||+||.||....+..+||.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhhhe
Confidence            589999999999999999742     3677788999999999999   5   8999999999999998889999999997


Q ss_pred             ccccccC--------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcC-CCCCCCCCCCCCcccccccccccc
Q 002875          752 YLTQLAD--------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN-GRLTNAGSSLQNKPIDGLLGEMYN  822 (872)
Q Consensus       752 ~~~~~~~--------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~  822 (872)
                      .......        .+...++.||+.||-+.+..|+.++||||+|+|++|+++- ...+..         ...+.++-+
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er---------~~t~~d~r~  474 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFER---------IATLTDIRD  474 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHH---------HHhhhhhhc
Confidence            5433322        1223367899999999999999999999999999999982 111110         000111111


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHH
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL  861 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~  861 (872)
                      .. +  ++......+.-..++.+++...|.+||++.++.
T Consensus       475 g~-i--p~~~~~d~p~e~~ll~~lls~~p~~RP~~~~~~  510 (516)
T KOG1033|consen  475 GI-I--PPEFLQDYPEEYTLLQQLLSPSPEERPSAIEVA  510 (516)
T ss_pred             CC-C--ChHHhhcCcHHHHHHHHhcCCCcccCchHHHHh
Confidence            11 1  111111122344677889999999999665553

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.54  E-value=4.8e-14  Score=143.54  Aligned_cols=135  Identities=15%  Similarity=0.167  Sum_probs=104.8

Q ss_pred             hhhhcc-CCCCCceeeeecCCCcEEEEEEeeccc--------------hhHHHHHHHHHHhhccCCCCc--eeEEEEEec
Q 002875          612 ECEEAA-RPQSAAGCKAVLPTGITVSVKKIEWGA--------------TRIKIVSEFITRIGTVRHKNL--IRLLGFCYN  674 (872)
Q Consensus       612 ~~~~~g-~g~~~~v~~~~~~~g~~vavK~~~~~~--------------~~~~~~~~e~~~l~~l~H~ni--v~l~~~~~~  674 (872)
                      ....+| .|+.|.||+.... |..+|||....+.              .....+.+|++.+.+++|++|  ++.++++..
T Consensus        35 ~~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~  113 (239)
T PRK01723         35 QARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVV  113 (239)
T ss_pred             cCceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeee
Confidence            345677 8888999998874 7789999885321              123456789999999999885  677777544


Q ss_pred             C-C---eeEEEEcccCC-CChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccc
Q 002875          675 R-H---QAYLLYDYLPN-GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG  749 (872)
Q Consensus       675 ~-~---~~~lv~ey~~~-g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg  749 (872)
                      . .   ..++||||+++ ++|.+++.... ..  ...+.++++++.+||+.   +|+||||||+|||++.++.++++|||
T Consensus       114 ~~~~~~~~~lV~e~l~G~~~L~~~l~~~~-l~--~~~~~~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~~v~LIDfg  187 (239)
T PRK01723        114 RHGLFYRADILIERIEGARDLVALLQEAP-LS--EEQWQAIGQLIARFHDA---GVYHADLNAHNILLDPDGKFWLIDFD  187 (239)
T ss_pred             ecCcceeeeEEEEecCCCCCHHHHHhcCC-CC--HHHHHHHHHHHHHHHHC---CCCCCCCCchhEEEcCCCCEEEEECC
Confidence            3 2   23599999997 69998886532 11  23467899999999999   99999999999999988899999999


Q ss_pred             cccc
Q 002875          750 FKYL  753 (872)
Q Consensus       750 ~~~~  753 (872)
                      .+..
T Consensus       188 ~~~~  191 (239)
T PRK01723        188 RGEL  191 (239)
T ss_pred             Cccc
Confidence            8764

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.45  E-value=2.1e-13  Score=151.16  Aligned_cols=139  Identities=17%  Similarity=0.124  Sum_probs=98.5

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeeccchhH-----------------------------------------HHHH
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRI-----------------------------------------KIVS  651 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~-----------------------------------------~~~~  651 (872)
                      .+.+|.|++|.||+|++.+|+.||||+..++....                                         -.+.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            56799999999999999999999999986542100                                         0133


Q ss_pred             HHHHHhhcc----CCCCceeEEEEEe-cCCeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHH-HHHHHhhCCCCCc
Q 002875          652 EFITRIGTV----RHKNLIRLLGFCY-NRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVAR-GLCFLHHDCYPAI  725 (872)
Q Consensus       652 ~e~~~l~~l----~H~niv~l~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~-gl~~lH~~~~~~i  725 (872)
                      .|.+.+.++    +|.+-|.+-.+|. .....+|||||++|++|.++......-..+..++.++++ .+..+|..   ++
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~---g~  278 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRD---GF  278 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---Cc
Confidence            455545444    2333333333332 234579999999999998876431100134556666666 46778887   99


Q ss_pred             ccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          726 PHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       726 ~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      +|+|+||.||+++.++.+++.|||++...
T Consensus       279 ~H~D~hPgNilv~~~g~i~liDfG~~~~l  307 (437)
T TIGR01982       279 FHADLHPGNIFVLKDGKIIALDFGIVGRL  307 (437)
T ss_pred             eeCCCCcccEEECCCCcEEEEeCCCeeEC
Confidence            99999999999999999999999998654

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.41  E-value=9.6e-14  Score=157.40  Aligned_cols=200  Identities=14%  Similarity=0.097  Sum_probs=130.8

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.+..|+||.||..... +.+.+|+| +++.    ..+.+-  ++.....|.+|                     ||=
T Consensus        87 ~IklisngAygavylvrh~~trqrfa~k-iNkq----~lilRn--ilt~a~npfvv---------------------gDc  138 (1205)
T KOG0606|consen   87 TIKLISNGAYGAVYLVRHKETRQRFAMK-INKQ----NLILRN--ILTFAGNPFVV---------------------GDC  138 (1205)
T ss_pred             eeEeeccCCCCceeeeeccccccchhhc-cccc----chhhhc--cccccCCccee---------------------chh
Confidence            7888999999999998764 56778884 3321    111110  23233344444                     444


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc---------------
Q 002875          691 SEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ---------------  755 (872)
Q Consensus       691 ~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~---------------  755 (872)
                      ...++.-...      -.+++.+++|+|+-   +|+|||+||+|.+|..-|.+|++|||+.+.--               
T Consensus       139 ~tllk~~g~l------Pvdmvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~  209 (1205)
T KOG0606|consen  139 ATLLKNIGPL------PVDMVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKD  209 (1205)
T ss_pred             hhhcccCCCC------cchhhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHH
Confidence            4444442211      11237899999998   99999999999999999999999999875310               


Q ss_pred             --ccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          756 --LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       756 --~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                        .-.....+++++|.+||+..-..|+..+|.|++|+|+||.+.|+.||+++...+      .+..++... +..++...
T Consensus       210 t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpee------lfg~visd~-i~wpE~de  282 (1205)
T KOG0606|consen  210 THEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE------LFGQVISDD-IEWPEEDE  282 (1205)
T ss_pred             HHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHH------HHhhhhhhh-ccccccCc
Confidence              001122346778888998887788889999999999999999999998663211      111221111 11111112


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC
Q 002875          834 DEIKLVLDVALLCTRSTPSDRP  855 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rp  855 (872)
                      ....++.+++.+.++.+|..|-
T Consensus       283 a~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  283 ALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             CCCHHHHHHHHHHHHhChHhhc
Confidence            2234566777778888998884

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.40  E-value=3.5e-13  Score=133.50  Aligned_cols=198  Identities=19%  Similarity=0.261  Sum_probs=128.7

Q ss_pred             hhccCCCCceeEEEEEecC-----CeeEEEEcccCCCChHHHhhCC------CCHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 002875          657 IGTVRHKNLIRLLGFCYNR-----HQAYLLYDYLPNGNLSEKIRTK------RDWAAKYKIVLGVARGLCFLHHDCYPAI  725 (872)
Q Consensus       657 l~~l~H~niv~l~~~~~~~-----~~~~lv~ey~~~g~L~~~l~~~------~~~~~~~~i~~~i~~gl~~lH~~~~~~i  725 (872)
                      +-.+.|-|||+++.|+.+.     ....++.|||+.|++..+|++-      .....-.+|+.||..||.|||+ |+|+|
T Consensus       121 llqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~Ppi  199 (458)
T KOG1266|consen  121 LLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CDPPI  199 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cCCcc
Confidence            4455799999999998653     3578899999999999999762      1223335799999999999998 58999


Q ss_pred             ccCCCCCCCeeeCCCCCeeEcccccccc------ccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCC
Q 002875          726 PHGDLKASNIVFDENMEPHLAEFGFKYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG  799 (872)
Q Consensus       726 ~Hrdlk~~Nill~~~~~~ki~dfg~~~~------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~  799 (872)
                      +|+++..+-|.+..++-+|+.--.....      ..........+..++.++++-.....+..+|||+||...+||..+.
T Consensus       200 ihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailE  279 (458)
T KOG1266|consen  200 IHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILE  279 (458)
T ss_pred             ccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHhe
Confidence            9999999999999999888754322110      0011111112233444445444445666789999999999999876


Q ss_pred             CCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       800 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .-..++.+...  .........    ....    +  ..=.+.+.+|++..|..||+|.+.+.|--.+
T Consensus       280 iq~tnseS~~~--~ee~ia~~i----~~le----n--~lqr~~i~kcl~~eP~~rp~ar~llfHpllf  335 (458)
T KOG1266|consen  280 IQSTNSESKVE--VEENIANVI----IGLE----N--GLQRGSITKCLEGEPNGRPDARLLLFHPLLF  335 (458)
T ss_pred             eccCCCcceee--hhhhhhhhe----eecc----C--ccccCcCcccccCCCCCCcchhhhhcCceee
Confidence            54332221110  000000000    0000    0  0112456689999999999999988765443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=9.5e-14  Score=158.49  Aligned_cols=242  Identities=16%  Similarity=0.152  Sum_probs=169.2

Q ss_pred             hhhhccCCCCCceeeeec--CCCcEEEEEEeeccchh---HHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL--PTGITVSVKKIEWGATR---IKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--~~g~~vavK~~~~~~~~---~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ....+|+|+|+.|-....  .....+|+|.+......   .+....|..+=+.+. |+|++++++...+.+..++++||.
T Consensus        24 ~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s  103 (601)
T KOG0590|consen   24 LSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYS  103 (601)
T ss_pred             ccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccccCcc
Confidence            666789999999887765  34456778877643322   233344555555565 999999999999999999999999


Q ss_pred             CCCChHHHh-hCC---CCHHHHHHHHHHHHHHHHHHh-hCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccccc-cC
Q 002875          686 PNGNLSEKI-RTK---RDWAAKYKIVLGVARGLCFLH-HDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQL-AD  758 (872)
Q Consensus       686 ~~g~L~~~l-~~~---~~~~~~~~i~~~i~~gl~~lH-~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~-~~  758 (872)
                      .+|++.+.+ ...   .+-.....+..|+..|+.|+| ..   ++.|||+||+|.+++..+ ..|++|||+|..... ..
T Consensus       104 ~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g  180 (601)
T KOG0590|consen  104 DGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNG  180 (601)
T ss_pred             cccccccccccCCccCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCchhhccccccCC
Confidence            999999998 443   233455678999999999999 76   999999999999999999 999999999865443 11


Q ss_pred             CC----Cccc-ccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          759 GS----FPAK-IAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       759 ~~----~~~~-~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                      ..    ...+ ...|+++|...+ .......|+||.|+++.-+++|..|+....... .....+...-.    ......+
T Consensus       181 ~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~-~~~~~~~~~~~----~~~~~~~  255 (601)
T KOG0590|consen  181 AERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKD-GRYSSWKSNKG----RFTQLPW  255 (601)
T ss_pred             cceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccccc-ccceeeccccc----ccccCcc
Confidence            11    1123 444667776655 345667899999999999999999987443322 11111111100    0001111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHH
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEAL  861 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~  861 (872)
                      ........++..+++..+|.+|.+.+++.
T Consensus       256 ~~~~~~~~~~l~k~l~~~~~~r~s~~~~~  284 (601)
T KOG0590|consen  256 NSISDQAHDLLHKILKENPSNRLSIEELK  284 (601)
T ss_pred             ccCChhhhhcccccccCCchhcccccccc
Confidence            22233455666778889999999988864

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=2e-12  Score=150.16  Aligned_cols=117  Identities=37%  Similarity=0.602  Sum_probs=103.3

Q ss_pred             ccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECc
Q 002875          427 SISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVS  506 (872)
Q Consensus       427 ~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  506 (872)
                      .+..|+++.|.+.|.+|..+..+++|+.|+|++|++.+.+|..+..++.|+.|+|++|++++.+|..++.+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeecCCCCcc--ccccCCccccCCCCCCCCC-CCCCC
Q 002875          507 FNDISGSIPSGKV--LRLMGSSAYAGNPKLCGAP-LQPCH  543 (872)
Q Consensus       507 ~N~l~~~~p~~~~--~~~~~~~~~~~np~~c~~~-l~~~~  543 (872)
                      +|+++|.+|..-.  ........+.+|+.+|+.| +.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999996421  1223455789999999976 45665

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.29  E-value=3.1e-12  Score=142.92  Aligned_cols=145  Identities=14%  Similarity=0.114  Sum_probs=92.4

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeecCC-CcEEEEEEeeccchh----------------------------------
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVLPT-GITVSVKKIEWGATR----------------------------------  646 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~~~-g~~vavK~~~~~~~~----------------------------------  646 (872)
                      .++...|+  . +-+|.|++|.||+|++.+ |+.||||++.++...                                  
T Consensus       116 ~~~F~~fd--~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e  192 (537)
T PRK04750        116 EEWFDDFD--I-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAE  192 (537)
T ss_pred             HHHHHhcC--h-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHH
Confidence            44455555  3 789999999999999977 999999999754210                                  


Q ss_pred             -HH------HHHHHHHHhhccC----CCCceeEEEEEec-CCeeEEEEcccCCCChHHH--hhCCCCHHHHHHHHHHHHH
Q 002875          647 -IK------IVSEFITRIGTVR----HKNLIRLLGFCYN-RHQAYLLYDYLPNGNLSEK--IRTKRDWAAKYKIVLGVAR  712 (872)
Q Consensus       647 -~~------~~~~e~~~l~~l~----H~niv~l~~~~~~-~~~~~lv~ey~~~g~L~~~--l~~~~~~~~~~~i~~~i~~  712 (872)
                       .+      .+.+|...+.+++    +.+.|.+-.++.+ ....+|||||++|+.+.+.  +.....  .+..++...++
T Consensus       193 ~~~~l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~--d~~~la~~~v~  270 (537)
T PRK04750        193 FEKTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGT--DMKLLAERGVE  270 (537)
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCC--CHHHHHHHHHH
Confidence             01      1233443344332    4444444444433 3467899999999999874  332221  01122221111


Q ss_pred             H-HHHHhhCCCCCcccCCCCCCCeeeCCCC----CeeEccccccccc
Q 002875          713 G-LCFLHHDCYPAIPHGDLKASNIVFDENM----EPHLAEFGFKYLT  754 (872)
Q Consensus       713 g-l~~lH~~~~~~i~Hrdlk~~Nill~~~~----~~ki~dfg~~~~~  754 (872)
                      . +.-++..   +++|+|+||.||+++.++    .+++.|||+....
T Consensus       271 ~~~~Qif~~---GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l  314 (537)
T PRK04750        271 VFFTQVFRD---GFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSL  314 (537)
T ss_pred             HHHHHHHhC---CeeeCCCChHHeEEecCCCCCCeEEEEecceEEEC
Confidence            1 1112334   999999999999999888    8999999987643

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.27  E-value=1.1e-11  Score=120.38  Aligned_cols=130  Identities=12%  Similarity=0.079  Sum_probs=96.8

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCce-eEEEEEecCCeeEEEEcccCCCChH
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLI-RLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv-~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      .+.++.|.++.||++... |+.|++|...........+..|+..++.+.+.+++ +++++.  ....++||||+++.++.
T Consensus         3 ~~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~   79 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSELL   79 (170)
T ss_pred             eeecCCcccCceEEEEEC-CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCccc
Confidence            456788999999998864 78899999765433233467788888888766655 444443  23458999999998886


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHhhCC--CCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          692 EKIRTKRDWAAKYKIVLGVARGLCFLHHDC--YPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       692 ~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~--~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      +.  .    .....++.+++++++.||+..  ..+++|+|++|.||+++ ++.+++.|||.+.
T Consensus        80 ~~--~----~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          80 TE--D----FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             cc--c----ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            53  0    112345678999999999872  12369999999999999 5689999999874

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=3.6e-13  Score=142.63  Aligned_cols=189  Identities=27%  Similarity=0.439  Sum_probs=105.4

Q ss_pred             EEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCcc
Q 002875           70 VLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNF  149 (872)
Q Consensus        70 ~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~  149 (872)
                      ..||+.|++. .+|..+..+..|..|.|..|.+. .+|..+.++..|.+|||+.|.++ .+|..++.|+ |+.|.+++|.
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            4444444444 34444444444444444444444 34444445555555555555442 3333333332 3444444443


Q ss_pred             CcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCcc
Q 002875          150 YQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES  229 (872)
Q Consensus       150 ~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  229 (872)
                      +. .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|.+..|++.. +|.++..+ .|..||+++|+++ .+|-.
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ecchh
Confidence            32 34555555556666666666665 466667777777777777777763 34445544 3677777777776 56777


Q ss_pred             ccCCCCCCEEEcccccCCCCCCccccC---CCCcceeecccc
Q 002875          230 FADLKNLRLLSLMYNEMSGTVPESLVQ---LPSLEILFIWNN  268 (872)
Q Consensus       230 ~~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~l~~n  268 (872)
                      |..|..|++|.|.+|.+. ..|..++.   ..-.++|+..-+
T Consensus       230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            777778888888777776 44444432   233455555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=1.3e-12  Score=138.59  Aligned_cols=214  Identities=28%  Similarity=0.459  Sum_probs=158.4

Q ss_pred             EEECCCCCCcccCCccc-cCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCC
Q 002875           22 DLNLSHNSFSGQFPVEI-FNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS  100 (872)
Q Consensus        22 ~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n  100 (872)
                      +|.|++-++..-.-.++ ..++.-...||+.|++. .+|..+..+..|+.+.|.+|.+. .+|..+.+|..|++|||+.|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN  131 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence            45566555543222222 45666677788888887 57777777888888888888876 67888888888888888888


Q ss_pred             cccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCc
Q 002875          101 YFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK  180 (872)
Q Consensus       101 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~  180 (872)
                      +++ .+|..+..+ -|+.|-+++|+++ .+|..++.+..|.+|+.+.|.+. .+|..++.+..|+.|.+..|++. .+|.
T Consensus       132 qlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~  206 (722)
T KOG0532|consen  132 QLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE  206 (722)
T ss_pred             hhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence            887 567766665 4788888888874 67888888888888888888766 46667888888999999999887 5677


Q ss_pred             cCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCC---CCCCEEEccccc
Q 002875          181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADL---KNLRLLSLMYNE  245 (872)
Q Consensus       181 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~n~  245 (872)
                      ++..| .|..||++.|++. .+|-.|.+|+.|++|-|.+|.++. .|..+.-.   .=-++|+..-++
T Consensus       207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            77755 5889999999998 568889999999999999999984 34444322   223455555553

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=4.5e-11  Score=129.85  Aligned_cols=240  Identities=14%  Similarity=0.118  Sum_probs=163.0

Q ss_pred             cCcchhhhccCCCCCceeeeec--CCCcEEEEEEeeccchh---HHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEE
Q 002875          608 FNSTECEEAARPQSAAGCKAVL--PTGITVSVKKIEWGATR---IKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~--~~g~~vavK~~~~~~~~---~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv  681 (872)
                      |.  ....+|.|.|+.||+...  .++..||+|.+..+...   ...-..|+.+...+ .|.+++++...+...+..|+=
T Consensus       267 f~--~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip  344 (524)
T KOG0601|consen  267 FG--LVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIP  344 (524)
T ss_pred             cc--eeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCc
Confidence            55  788999999999998763  56789999988654321   22223444444443 589999988888887888899


Q ss_pred             EcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEccccccccccccC
Q 002875          682 YDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~~~~~  758 (872)
                      -|||++|+....+.-  ..+...++++..|++.|+.++|+.   .++|+|+||+||++..+ +..++.|||++.......
T Consensus       345 ~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~  421 (524)
T KOG0601|consen  345 LEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSS  421 (524)
T ss_pred             hhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhhccccccccccceec
Confidence            999999998766532  346677888999999999999987   99999999999999876 889999999875322211


Q ss_pred             CCCcccccccC-chhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          759 GSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       759 ~~~~~~~~~~~-~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      .........++ ++.......+-.+.|++|||.-+.|.+|+....+.+....         .+.... .+..+   ....
T Consensus       422 ~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~~---------~i~~~~-~p~~~---~~~~  488 (524)
T KOG0601|consen  422 GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQSL---------TIRSGD-TPNLP---GLKL  488 (524)
T ss_pred             ccccccccccccchhhccccccccccccccccccccccccCcccCcccccce---------eeeccc-ccCCC---chHH
Confidence            11111112232 3444445566778899999999999999876544332211         111110 00011   1113


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ....+.......|+..||.+.+...+..
T Consensus       489 ~~q~~~kv~~~~~~~~~~l~~~l~~~~~  516 (524)
T KOG0601|consen  489 QLQVLLKVMINPDRKRRPSAVELSLHSE  516 (524)
T ss_pred             hhhhhhhhhcCCccccchhhhhhcccch
Confidence            3444555577889999999988765544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=7.9e-11  Score=131.13  Aligned_cols=198  Identities=30%  Similarity=0.436  Sum_probs=126.8

Q ss_pred             EEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCC-CCCEEEccCCcccccCCcccCCCCCCcEeeCccC
Q 002875           46 SLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLE-HLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN  124 (872)
Q Consensus        46 ~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  124 (872)
                      .|+++.|.+.. .......++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            46666666532 2233445566777777777766 3444555553 6777777777766 34455667777777777777


Q ss_pred             cCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCc
Q 002875          125 LLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPW  204 (872)
Q Consensus       125 ~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  204 (872)
                      +++. +|...+.++.|+.|++++|.+. .+|..+.....|+.|++++|.+. ..+..+..+.++..+.+..|++... +.
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence            7653 4444446666777777777655 34444445556777777777533 3555667777777777777777642 44


Q ss_pred             ccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCc
Q 002875          205 EFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE  252 (872)
Q Consensus       205 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  252 (872)
                      .++.+++++.|++++|.++...+  ++.+.+++.|+++.|.+....+.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            56777778888888888774433  77788888888888877755544

>PLN03150 hypothetical protein; Provisional

Probab=99.07  E-value=2.4e-10  Score=133.01  Aligned_cols=108  Identities=30%  Similarity=0.518  Sum_probs=69.9

Q ss_pred             CCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           44 LISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        44 L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|++|+|++|.+.+.+|+.++++++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcCCccCCccCCCC-CCCCEEEccCccCc
Q 002875          124 NLLNDQIPAELGML-KTVTHMEIGYNFYQ  151 (872)
Q Consensus       124 n~l~~~~p~~l~~L-~~L~~L~l~~n~~~  151 (872)
                      |.+++.+|..++.+ .++..+++.+|...
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            66666666665543 34556666666443

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.06  E-value=6e-10  Score=113.53  Aligned_cols=140  Identities=14%  Similarity=0.196  Sum_probs=109.8

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCC--CceeEEEEEecC---CeeEEEEccc
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHK--NLIRLLGFCYNR---HQAYLLYDYL  685 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~--niv~l~~~~~~~---~~~~lv~ey~  685 (872)
                      .+.++.|..+.+|+++..+|+.+++|.......  ....+..|+++++.+++.  .+.++++++...   +..++||||+
T Consensus         3 ~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             ceecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            356889999999999987788999999865432  345678889999988763  456778777654   3678999999


Q ss_pred             CCCChHHHhh-CCCCHHHHHHHHHHHHHHHHHHhhCC-------------------------------------------
Q 002875          686 PNGNLSEKIR-TKRDWAAKYKIVLGVARGLCFLHHDC-------------------------------------------  721 (872)
Q Consensus       686 ~~g~L~~~l~-~~~~~~~~~~i~~~i~~gl~~lH~~~-------------------------------------------  721 (872)
                      +|+++.+.+. ...+..++..++.+++++++++|+..                                           
T Consensus        83 ~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (223)
T cd05154          83 DGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLR  162 (223)
T ss_pred             CCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            9998887664 34566777888889999998888521                                           


Q ss_pred             ----------CCCcccCCCCCCCeeeCC--CCCeeEccccccc
Q 002875          722 ----------YPAIPHGDLKASNIVFDE--NMEPHLAEFGFKY  752 (872)
Q Consensus       722 ----------~~~i~Hrdlk~~Nill~~--~~~~ki~dfg~~~  752 (872)
                                ...++|+|++|.||+++.  ++.+.|.||+.+.
T Consensus       163 ~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         163 WLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             HHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence                      245799999999999998  5668899999764

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=9.6e-11  Score=138.78  Aligned_cols=150  Identities=25%  Similarity=0.288  Sum_probs=112.8

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCc--CcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNN--FSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKV   94 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~   94 (872)
                      +...++..+.+|.+..+ +.+.. .+.|++|-+..|.  +..+..+.|..++.|++|||++|.-.+.+|..++.|.+||+
T Consensus       522 ~~~~rr~s~~~~~~~~~-~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHI-AGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hhheeEEEEeccchhhc-cCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            45788888888888643 43333 3479999999986  66565666899999999999998776789999999999999


Q ss_pred             EEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccC--cccCCccccCCCCCcEEEe
Q 002875           95 LNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFY--QGNIPWQLGNMSEVQYLDI  169 (872)
Q Consensus        95 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~--~~~~p~~~~~l~~L~~L~l  169 (872)
                      |+|+++.+. .+|..+++|+.|.+|++..+.-...+|.....|.+|++|.+.....  ....-..+.++.+|+.+..
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999988 6899999999999999998876556677777788888888765431  1112223344555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.03  E-value=3.2e-10  Score=126.22  Aligned_cols=201  Identities=31%  Similarity=0.469  Sum_probs=163.3

Q ss_pred             cEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCC-CCcEeeCccCcCCccCCccCCCCCCCCEEEccC
Q 002875           69 LVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFK-SLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGY  147 (872)
Q Consensus        69 ~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~  147 (872)
                      ..+++..|.+. ..+..+..++.++.|++.+|.+.. +|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus        96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccc-cCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            36888888874 234456677899999999999984 666677775 9999999999986 4567889999999999999


Q ss_pred             ccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCC
Q 002875          148 NFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIP  227 (872)
Q Consensus       148 n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  227 (872)
                      |.+. .+|.....+++|+.|++++|.+. .+|..+..+..|++|.+++|.+. ..+..+..+..+..+.+.+|++.. .+
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~  248 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP  248 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence            9876 35555557889999999999998 57776666777999999999543 334567888899999999999873 37


Q ss_pred             ccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccC
Q 002875          228 ESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL  278 (872)
Q Consensus       228 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~  278 (872)
                      ..++.+++++.|+++.|.++....  +..+.+++.|++++|.+....|...
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            788999999999999999985443  8899999999999999987666543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=5.3e-10  Score=121.63  Aligned_cols=238  Identities=17%  Similarity=0.130  Sum_probs=162.3

Q ss_pred             hhhhccC--CCCCceeeeec---CCCcEEEEEEeecc-c--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAAR--PQSAAGCKAVL---PTGITVSVKKIEWG-A--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~--g~~~~v~~~~~---~~g~~vavK~~~~~-~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ...-+|.  |.+|.||++..   .++..+|+|+-+.. +  .....-.+|+..-+++ .|+|.|+.+..+.+.+..|+=+
T Consensus       118 ~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfiqt  197 (524)
T KOG0601|consen  118 ISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFIQT  197 (524)
T ss_pred             cccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcceeee
Confidence            6677888  99999999875   67889999984321 1  1112222334444444 4999999999999999999999


Q ss_pred             cccCCCChHHHhhCC---CCHHHHHHHHHHHHH----HHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEccccccccc
Q 002875          683 DYLPNGNLSEKIRTK---RDWAAKYKIVLGVAR----GLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLT  754 (872)
Q Consensus       683 ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~----gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~  754 (872)
                      |+|. .+|..+.+..   .+....+.+..+..+    |+.++|..   .|+|-|+||.||.+..+ ..++.+|||+....
T Consensus       198 E~~~-~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i  273 (524)
T KOG0601|consen  198 ELCG-ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKLTDFGLVSKI  273 (524)
T ss_pred             cccc-chhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeecCCcceeEEc
Confidence            9996 6888887652   344556677777777    99999999   99999999999999988 78999999987655


Q ss_pred             cccCCCC-------cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          755 QLADGSF-------PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       755 ~~~~~~~-------~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      ....-..       ..+-+-|+.+|...+ -++.+.|+||+|.+..|..++..++..+....+..    .++.+.+.   
T Consensus       274 ~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~----~r~~~ip~---  345 (524)
T KOG0601|consen  274 SDGNFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQ----LRQGYIPL---  345 (524)
T ss_pred             cCCccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhcccccCCCCCCccc----cccccCch---
Confidence            4332111       112233555565443 35677899999999999999887766442222111    11222111   


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                        +.+.....+....+..+++.+|..|++.+++.++
T Consensus       346 --e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l  379 (524)
T KOG0601|consen  346 --EFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTAL  379 (524)
T ss_pred             --hhhcCcchhhhhHHHHhcCcchhhhhHHHHHhcc
Confidence              1111112233346778999999999998887643

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.01  E-value=1.8e-09  Score=118.43  Aligned_cols=164  Identities=19%  Similarity=0.236  Sum_probs=118.4

Q ss_pred             ecCCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChHHHhhCCCCHHHHHHH
Q 002875          628 VLPTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI  706 (872)
Q Consensus       628 ~~~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i  706 (872)
                      +..+|.+|.|...+.... ..+...+.++.|+.+|||||++++..++..+..|||+|-+.  -|..++.+.. -....--
T Consensus        33 ~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~-~~~v~~G  109 (690)
T KOG1243|consen   33 RKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELG-KEEVCLG  109 (690)
T ss_pred             eeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhH-HHHHHHH
Confidence            356899999999876433 23445667888999999999999999999999999999885  4777776543 2333445


Q ss_pred             HHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccccccCchhhhcccCCccccc
Q 002875          707 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIAWTESGEFYNAMKEEMYMD  784 (872)
Q Consensus       707 ~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~D  784 (872)
                      +.||+.||.|||+.|  +++|+++.-+.|+++..|.-||++|-++........  ........+..|+..  .+-+...|
T Consensus       110 l~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~--~~s~~s~D  185 (690)
T KOG1243|consen  110 LFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEI--DPSEWSID  185 (690)
T ss_pred             HHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhc--Cccccchh
Confidence            789999999999776  899999999999999999999999987643322111  000000001111111  11123469


Q ss_pred             chhHHHHHHHHHcC
Q 002875          785 VYGFGEIILEILTN  798 (872)
Q Consensus       785 v~S~Gvil~el~tg  798 (872)
                      .|-|||++||++.|
T Consensus       186 ~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  186 SWGLGCLIEELFNG  199 (690)
T ss_pred             hhhHHHHHHHHhCc
Confidence            99999999999998

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.00  E-value=2.4e-09  Score=103.77  Aligned_cols=132  Identities=10%  Similarity=0.091  Sum_probs=93.9

Q ss_pred             hhccCCCCCceeeeecCC-------CcEEEEEEeeccc-----------------------hhHHHH----HHHHHHhhc
Q 002875          614 EEAARPQSAAGCKAVLPT-------GITVSVKKIEWGA-----------------------TRIKIV----SEFITRIGT  659 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~-------g~~vavK~~~~~~-----------------------~~~~~~----~~e~~~l~~  659 (872)
                      ..||.|.-+.||.|...+       +..+|||+.+...                       ...+.+    .+|.+.|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468899999999998653       5799999874310                       001122    378888888


Q ss_pred             cCC--CCceeEEEEEecCCeeEEEEcccCCCChHH-HhhC-CCCHHHHHHHHHHHHHHHHHH-hhCCCCCcccCCCCCCC
Q 002875          660 VRH--KNLIRLLGFCYNRHQAYLLYDYLPNGNLSE-KIRT-KRDWAAKYKIVLGVARGLCFL-HHDCYPAIPHGDLKASN  734 (872)
Q Consensus       660 l~H--~niv~l~~~~~~~~~~~lv~ey~~~g~L~~-~l~~-~~~~~~~~~i~~~i~~gl~~l-H~~~~~~i~Hrdlk~~N  734 (872)
                      +.-  -++-+.+++    ..-++||||+.++.+.. .++. ..+..+...+..+++.++.++ |..   +|+|+|+++.|
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~---glVHGDLs~~N  155 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKEC---NLVHADLSEYN  155 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHH
Confidence            764  355566654    45689999997654422 2222 122334566788999999999 777   99999999999


Q ss_pred             eeeCCCCCeeEcccccccc
Q 002875          735 IVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       735 ill~~~~~~ki~dfg~~~~  753 (872)
                      |+++ ++.+.++|||-+..
T Consensus       156 IL~~-~~~v~iIDF~qav~  173 (197)
T cd05146         156 MLWH-DGKVWFIDVSQSVE  173 (197)
T ss_pred             EEEE-CCcEEEEECCCcee
Confidence            9997 46799999997643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=3.1e-10  Score=107.61  Aligned_cols=104  Identities=29%  Similarity=0.334  Sum_probs=27.3

Q ss_pred             CCcEEECCCCCCcccCCcccc-CCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccc-cCCCCCCEEE
Q 002875           19 ELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEI-SQLEHLKVLN   96 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~-~~L~~L~~L~   96 (872)
                      .++.|+|++|.|+.+.  .+. .+.+|+.|+|++|.|+.+  +.+..++.|++|++++|+++.. .+.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            3556666666665432  232 355666666666666543  2355566666666666666532 2223 2456666666


Q ss_pred             ccCCcccccC-CcccCCCCCCcEeeCccCcCC
Q 002875           97 LAGSYFSGPI-PSQFGSFKSLEFLHLAGNLLN  127 (872)
Q Consensus        97 L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~  127 (872)
                      |++|.+.... -..+..+++|++|+|.+|.+.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            6666654321 123445566666666666553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=2.9e-10  Score=134.73  Aligned_cols=178  Identities=25%  Similarity=0.269  Sum_probs=124.1

Q ss_pred             CCCcEEECCCCC--CcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           18 NELVDLNLSHNS--FSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        18 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      +.|++|-+..|.  +..+...-|..++.|++|||++|.--+.+|+.++.|-+|++|||+++.+. .+|..+.+|..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            479999999996  55555555788999999999999876789999999999999999999998 799999999999999


Q ss_pred             EccCCcccccCCcccCCCCCCcEeeCccCc--CCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCc----EEEe
Q 002875           96 NLAGSYFSGPIPSQFGSFKSLEFLHLAGNL--LNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ----YLDI  169 (872)
Q Consensus        96 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~----~L~l  169 (872)
                      ++..+.....+|.....|++||+|.+....  .+...-.++..|.+|+.+.......  .+-..+..+..|.    .+.+
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence            999988766677878889999999997654  2222333344555555555432221  1111122233332    2222


Q ss_pred             ecCCCcccCCccCcCCCCCCEEEccCCCCc
Q 002875          170 AGANLSGSIPKELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       170 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  199 (872)
                      .++... ..+..+..+.+|+.|.+.++.+.
T Consensus       702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  702 EGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             cccccc-eeecccccccCcceEEEEcCCCc
Confidence            222222 34455666777777777777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=4e-10  Score=106.90  Aligned_cols=119  Identities=23%  Similarity=0.248  Sum_probs=35.9

Q ss_pred             CCCCCCcccCCccccCCCCCCEEECcCCcCcccCCcccc-CCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCccc
Q 002875           25 LSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQ-SLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFS  103 (872)
Q Consensus        25 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~  103 (872)
                      |+.+.|..+  ..+.+..++++|+|++|.|+.+  +.++ .+.+|+.||+++|.++..  +.+..++.|++|++++|.++
T Consensus         4 lt~~~i~~~--~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen    4 LTANMIEQI--AQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             ------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---
T ss_pred             ccccccccc--cccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC
Confidence            455555432  2355667899999999999864  2455 688999999999999853  35888999999999999998


Q ss_pred             ccCCccc-CCCCCCcEeeCccCcCCccCC-ccCCCCCCCCEEEccCccC
Q 002875          104 GPIPSQF-GSFKSLEFLHLAGNLLNDQIP-AELGMLKTVTHMEIGYNFY  150 (872)
Q Consensus       104 ~~~p~~~-~~l~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n~~  150 (872)
                      .. ++.+ ..+++|++|++++|+|...-. ..++.+++|+.|++.+|.+
T Consensus        78 ~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   78 SI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             cc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            54 4344 468999999999999864321 2234455555555555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=1e-10  Score=114.54  Aligned_cols=126  Identities=23%  Similarity=0.248  Sum_probs=90.4

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      |..|+.||||+|.|+. +..++.-++.++.|++|+|.|..+  +.++.+.+|+.|||++|.++ .+..+=.+|.|.++|.
T Consensus       283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            4678889999999874 456777788899999999988754  33888889999999998887 4455556788889999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccC-CccCCCCCCCCEEEccCc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQI-PAELGMLKTVTHMEIGYN  148 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~L~~L~~L~l~~n  148 (872)
                      |++|.+..  -+.++++-+|..||+++|+|.... -..+++|+.|+++.+.+|
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence            99888753  245788888888999888875321 122344444444444433

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.88  E-value=1.5e-08  Score=94.11  Aligned_cols=129  Identities=17%  Similarity=0.218  Sum_probs=96.2

Q ss_pred             hccCCCCCceeeeecCCCcEEEEEEe-ecc--------chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          615 EAARPQSAAGCKAVLPTGITVSVKKI-EWG--------ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~~g~~vavK~~-~~~--------~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      .+++|+-+.+|.+.. -|.++.+|.= .+.        .-..+.-.+|..++.+++---|-.-.=+..+++...|||||.
T Consensus         3 ~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I   81 (204)
T COG3642           3 LIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYI   81 (204)
T ss_pred             hhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEe
Confidence            567888889998855 3445666643 221        112344567888888876544544444556777888999999


Q ss_pred             CCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          686 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       686 ~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      +|-.|.+.+...     +..++..+-.-+.-||..   +|+|+|+.++||.+..+. +.++|||++..
T Consensus        82 ~G~~lkd~l~~~-----~~~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          82 EGELLKDALEEA-----RPDLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             CChhHHHHHHhc-----chHHHHHHHHHHHHHHhc---CeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            998888888655     356777788888889999   999999999999998764 99999999864

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=2.6e-10  Score=127.06  Aligned_cols=197  Identities=29%  Similarity=0.378  Sum_probs=82.8

Q ss_pred             CCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEee
Q 002875           41 LTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH  120 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  120 (872)
                      +..++.+++..|.|.. .-..+..+++|+.|++..|.|.++. ..+..+++|++|+|++|.|+.+  ..+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            4444445555555543 1223455555555555555554322 1144455555555555555433  2244455555555


Q ss_pred             CccCcCCccCCccCCCCCCCCEEEccCccCcccCC-ccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCc
Q 002875          121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIP-WQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       121 L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  199 (872)
                      +++|.|+..  ..+..++.|+.+++++|.+...-+ . ...+..++.+++.+|.+..  ...+..+..+..+++..|.++
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence            555555422  222234444444444443332211 1 2334444444444444431  112222233333344444444


Q ss_pred             ccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC
Q 002875          200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       200 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      ...+.......+|+.+++++|++.. .+..+..+.++..|++..|++.
T Consensus       222 ~~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  222 KLEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc
Confidence            3221111000024555555555442 2233444445555555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=2.8e-10  Score=126.79  Aligned_cols=243  Identities=29%  Similarity=0.304  Sum_probs=174.9

Q ss_pred             cCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           16 FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        16 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      ++..+..+++..|.|.. +-..+..+.+|+.|++..|.|.++.. .+..+.+|++||+++|.|+.+.  .+..+..|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence            46778888899998875 34558889999999999999986533 3788999999999999998653  46777889999


Q ss_pred             EccCCcccccCCcccCCCCCCcEeeCccCcCCccCC-ccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCC
Q 002875           96 NLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP-AELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL  174 (872)
Q Consensus        96 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l  174 (872)
                      ++++|.+...  ..|..+++|+.+++++|.+....+ . ...+..++.++++.|.+...  ..+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            9999999743  457779999999999999976655 3 57888899999999876532  2233344455557888887


Q ss_pred             cccCCccCcCCC--CCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCC---
Q 002875          175 SGSIPKELSNLT--KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGT---  249 (872)
Q Consensus       175 ~~~~p~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---  249 (872)
                      ...-+  +..+.  +|+.+++++|.+... +..+..+..+..|++.+|++...  ..+.....+..+....|.+...   
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  295 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI  295 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence            64322  22233  388999999998743 24567788899999999998743  2345566677777777776532   


Q ss_pred             CCc-cccCCCCcceeecccccccc
Q 002875          250 VPE-SLVQLPSLEILFIWNNYFSG  272 (872)
Q Consensus       250 ~p~-~l~~l~~L~~L~l~~n~l~~  272 (872)
                      ... .....+.+..+.+..|....
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  296 SQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hccccccccccccccccccCcccc
Confidence            111 13445566666666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=6e-10  Score=115.18  Aligned_cols=207  Identities=23%  Similarity=0.222  Sum_probs=109.6

Q ss_pred             CCCCcEEECcCCcCccccC--ccccCCCCCCEEEccCCccccc--CCcccCCCCCCcEeeCccCcCCccCCccCCCCCCC
Q 002875           65 LRNLLVLDAFSNSFSGSVP--AEISQLEHLKVLNLAGSYFSGP--IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV  140 (872)
Q Consensus        65 l~~L~~LdL~~n~l~~~~p--~~~~~L~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L  140 (872)
                      +.+|+..-|.+.... ..+  .....|++++.|||++|-+...  +......|++|+.|+|+.|++.-.....       
T Consensus       120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-------  191 (505)
T KOG3207|consen  120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-------  191 (505)
T ss_pred             HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-------
Confidence            445555555554443 222  1334555666666665554321  1122345556666666666553111100       


Q ss_pred             CEEEccCccCcccCCccccCCCCCcEEEeecCCCccc-CCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcC
Q 002875          141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS-IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD  219 (872)
Q Consensus       141 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  219 (872)
                                      .-..++.|+.|.++.|+++.. +-..+..+++|+.|+|..|............+..|++|||++
T Consensus       192 ----------------~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  192 ----------------TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN  255 (505)
T ss_pred             ----------------chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence                            011355677777777777521 112233467777777777753333333445566777777777


Q ss_pred             CCCcCcC-CccccCCCCCCEEEcccccCCCC-CCcc-----ccCCCCcceeeccccccccc-CCccCCCCCCCcEEecCC
Q 002875          220 NRLSGPI-PESFADLKNLRLLSLMYNEMSGT-VPES-----LVQLPSLEILFIWNNYFSGS-LPENLGRNSKLRWVDVST  291 (872)
Q Consensus       220 N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~ls~  291 (872)
                      |++.... -...+.++.|+.|+++.+.+... .|+.     ...+++|++|++..|++... .-..+..+.+|+.|.+..
T Consensus       256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence            7765321 13456677777777777776643 2222     34567788888888877421 111233445566666666


Q ss_pred             Ceee
Q 002875          292 NNFN  295 (872)
Q Consensus       292 n~l~  295 (872)
                      |.++
T Consensus       336 n~ln  339 (505)
T KOG3207|consen  336 NYLN  339 (505)
T ss_pred             cccc
Confidence            6664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.81  E-value=7.9e-10  Score=108.37  Aligned_cols=133  Identities=24%  Similarity=0.280  Sum_probs=103.1

Q ss_pred             ccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCC
Q 002875          158 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLR  237 (872)
Q Consensus       158 ~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  237 (872)
                      +..+..|+.+|||+|.|+ .+.+++.-++.++.|++++|.|...-  .+..+.+|+.|||++|.++ .+..+-..+.|.+
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            344667888999999887 56677777889999999999987543  3777889999999999887 3556667788899


Q ss_pred             EEEcccccCCCCCCccccCCCCcceeecccccccccC-CccCCCCCCCcEEecCCCeeee
Q 002875          238 LLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSL-PENLGRNSKLRWVDVSTNNFNG  296 (872)
Q Consensus       238 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~~~~L~~L~ls~n~l~~  296 (872)
                      +|.|+.|.+...  ..+..+-+|..||+.+|++...- -..+++++.|+.+.+.+|.+.+
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999999988642  46777888889999999886421 2357788888888888888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=6.2e-10  Score=115.06  Aligned_cols=208  Identities=23%  Similarity=0.217  Sum_probs=98.1

Q ss_pred             CCCCCCEEECcCCcCcccCC--ccccCCCCCcEEECcCCcCccccC--ccccCCCCCCEEEccCCcccccCCccc-CCCC
Q 002875           40 NLTSLISLDISRNNFSGHFP--GGIQSLRNLLVLDAFSNSFSGSVP--AEISQLEHLKVLNLAGSYFSGPIPSQF-GSFK  114 (872)
Q Consensus        40 ~l~~L~~L~Ls~N~i~~~~~--~~~~~l~~L~~LdL~~n~l~~~~p--~~~~~L~~L~~L~L~~n~~~~~~p~~~-~~l~  114 (872)
                      ++.+|+...|.+..... .+  +-...|++++.|||+.|-+...-|  .-...|++|+.|+|+.|.+.....+.. ..++
T Consensus       119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            46666666666665431 22  234566777777777765542211  223566777777777776653222111 2455


Q ss_pred             CCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEcc
Q 002875          115 SLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLF  194 (872)
Q Consensus       115 ~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~  194 (872)
                      +|+.|.|++|.++-..                       +-+....+++|+.|++.+|+....-.....-+..|++|+|+
T Consensus       198 ~lK~L~l~~CGls~k~-----------------------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKD-----------------------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhheEEeccCCCCHHH-----------------------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            6666666666654110                       00111223344444444443211111122223344445555


Q ss_pred             CCCCcccCC-cccccCCCCCEEeCcCCCCcCc-CCcc-----ccCCCCCCEEEcccccCCCCC-CccccCCCCcceeecc
Q 002875          195 RNQLAGQVP-WEFSRVTTLKSLDLSDNRLSGP-IPES-----FADLKNLRLLSLMYNEMSGTV-PESLVQLPSLEILFIW  266 (872)
Q Consensus       195 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~  266 (872)
                      +|++..... ...+.++.|..|+++.+.+... .|+.     -..+++|++|+++.|++.... -..+..+++|+.|.+.
T Consensus       255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            444432110 1234445555555555554432 1111     234556666666666664210 1233445566666666


Q ss_pred             ccccc
Q 002875          267 NNYFS  271 (872)
Q Consensus       267 ~n~l~  271 (872)
                      .|.+.
T Consensus       335 ~n~ln  339 (505)
T KOG3207|consen  335 LNYLN  339 (505)
T ss_pred             ccccc
Confidence            66665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.3e-09  Score=82.59  Aligned_cols=61  Identities=39%  Similarity=0.597  Sum_probs=55.0

Q ss_pred             ccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCee
Q 002875          450 VELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDI  510 (872)
Q Consensus       450 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l  510 (872)
                      ++|++|++++|++....++.|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999988888999999999999999999988889999999999999999875

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.9e-09  Score=82.90  Aligned_cols=59  Identities=36%  Similarity=0.455  Sum_probs=32.8

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS   77 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~   77 (872)
                      .|++|++++|+|+.+.+..|.++++|++|++++|.++.+.|+.|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            35555555555555555555555555555555555555555555555555555555554

...

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.78  E-value=3.1e-08  Score=95.74  Aligned_cols=122  Identities=17%  Similarity=0.227  Sum_probs=80.7

Q ss_pred             eeeeecCCCcEEEEEEeeccch---------------------------hHHHHHHHHHHhhccCCC--CceeEEEEEec
Q 002875          624 GCKAVLPTGITVSVKKIEWGAT---------------------------RIKIVSEFITRIGTVRHK--NLIRLLGFCYN  674 (872)
Q Consensus       624 v~~~~~~~g~~vavK~~~~~~~---------------------------~~~~~~~e~~~l~~l~H~--niv~l~~~~~~  674 (872)
                      ||.|..++|..||||.-+.+..                           ......+|.+.|.++..-  ++-+.+++.  
T Consensus         2 Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~--   79 (188)
T PF01163_consen    2 VYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN--   79 (188)
T ss_dssp             EEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE--
T ss_pred             EEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe--
Confidence            8999999999999998754210                           023457889999998765  455565442  


Q ss_pred             CCeeEEEEcccC--CCChHHHhhCCCCHHHHHHHHHHHHHHHHHH-hhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          675 RHQAYLLYDYLP--NGNLSEKIRTKRDWAAKYKIVLGVARGLCFL-HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       675 ~~~~~lv~ey~~--~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~l-H~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                        .-+|||||++  |..+..+.....+......++.+++..+..+ |..   +|+|+|+.+.||+++++ .+.|+|||-+
T Consensus        80 --~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~---givHGDLs~~NIlv~~~-~~~iIDf~qa  153 (188)
T PF01163_consen   80 --RNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKA---GIVHGDLSEYNILVDDG-KVYIIDFGQA  153 (188)
T ss_dssp             --TTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCT---TEEESS-STTSEEEETT-CEEE--GTTE
T ss_pred             --CCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhc---CceecCCChhhEEeecc-eEEEEecCcc
Confidence              3479999999  5445443333222334556777777766664 566   99999999999999987 8999999976


Q ss_pred             cc
Q 002875          752 YL  753 (872)
Q Consensus       752 ~~  753 (872)
                      ..
T Consensus       154 v~  155 (188)
T PF01163_consen  154 VD  155 (188)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.73  E-value=8.7e-08  Score=88.46  Aligned_cols=138  Identities=15%  Similarity=0.171  Sum_probs=99.1

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEe-ecc--------chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKI-EWG--------ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~-~~~--------~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.+-+|+-+.|+++.. +|+...||.= .++        +-..+...+|++.+.+++---|.--.=++.+...-.|+|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            456778899899998877 6777777743 221        112445677888888876444433333455555667999


Q ss_pred             cccCC-CChHHHhhCCC---CHHHH-HHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC---CeeEcccccccc
Q 002875          683 DYLPN-GNLSEKIRTKR---DWAAK-YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM---EPHLAEFGFKYL  753 (872)
Q Consensus       683 ey~~~-g~L~~~l~~~~---~~~~~-~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~---~~ki~dfg~~~~  753 (872)
                      ||.++ -++.+++....   ...+. ..++..|.+.+.-||..   +|+|+|+..+||++.+++   .+.++|||++..
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEEEeecchhc
Confidence            99976 47888876532   22233 67888999999999999   999999999999997654   458999999754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.72  E-value=7.8e-10  Score=111.38  Aligned_cols=247  Identities=20%  Similarity=0.252  Sum_probs=154.0

Q ss_pred             cccCCCCCCEEECcCCcCcc----cCCccccCCCCCcEEECcCC---cCccccCc-------cccCCCCCCEEEccCCcc
Q 002875           37 EIFNLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFSN---SFSGSVPA-------EISQLEHLKVLNLAGSYF  102 (872)
Q Consensus        37 ~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~LdL~~n---~l~~~~p~-------~~~~L~~L~~L~L~~n~~  102 (872)
                      ....+..+++++||+|.+..    .+...+.+.++|+..+++.-   +....+|.       ++...++|++||||.|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            44567788888888888752    23345667778888887643   12223333       344566888999998887


Q ss_pred             cccCCcc----cCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCccc-
Q 002875          103 SGPIPSQ----FGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS-  177 (872)
Q Consensus       103 ~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~-  177 (872)
                      ....+..    +.+...|++|.|.+|.+...--..++.  .|.+|.  .+       ...++-+.|+++..++|++... 
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeecccccccc
Confidence            6444433    456788888888888764221111110  011110  11       1123345677888887776532 


Q ss_pred             ---CCccCcCCCCCCEEEccCCCCccc----CCcccccCCCCCEEeCcCCCCcCc----CCccccCCCCCCEEEcccccC
Q 002875          178 ---IPKELSNLTKLESLFLFRNQLAGQ----VPWEFSRVTTLKSLDLSDNRLSGP----IPESFADLKNLRLLSLMYNEM  246 (872)
Q Consensus       178 ---~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l  246 (872)
                         +...+...+.|+.+.+..|.|...    ....|..+++|+.|||.+|-++..    +...+..+++|+.|+++++.+
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence               223455567788888888877421    123467788888888888887642    345567778888888888887


Q ss_pred             CCCCCcc----c-cCCCCcceeeccccccccc----CCccCCCCCCCcEEecCCCee
Q 002875          247 SGTVPES----L-VQLPSLEILFIWNNYFSGS----LPENLGRNSKLRWVDVSTNNF  294 (872)
Q Consensus       247 ~~~~p~~----l-~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~ls~n~l  294 (872)
                      ...-...    + ...|+|+.|.+.+|.++..    +...+...+.|..|++++|.+
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6432222    2 2368888888888887632    222344567788888888888

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.69  E-value=1.7e-07  Score=96.55  Aligned_cols=135  Identities=12%  Similarity=0.068  Sum_probs=95.3

Q ss_pred             hhccCCCCCceeeeecCCCcEEEEEEeeccch------------hHHHHHHHHHHhhccCCCCc--eeEEEEEec-----
Q 002875          614 EEAARPQSAAGCKAVLPTGITVSVKKIEWGAT------------RIKIVSEFITRIGTVRHKNL--IRLLGFCYN-----  674 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~------------~~~~~~~e~~~l~~l~H~ni--v~l~~~~~~-----  674 (872)
                      +.+-+.....|++... .|+.|.||+......            ....+.+|...+.++....|  .+.+++.+.     
T Consensus        28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            3333344445667655 678999997643221            11136778888877753333  344555542     


Q ss_pred             CCeeEEEEcccCCC-ChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-------CCC
Q 002875          675 RHQAYLLYDYLPNG-NLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-------NME  742 (872)
Q Consensus       675 ~~~~~lv~ey~~~g-~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-------~~~  742 (872)
                      ....++||||+++- +|.+++..    ..+...+..++.+++..++-||..   +|+|+|++++|||++.       +..
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~~~  183 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGREEDLK  183 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCCCCCce
Confidence            23578999999975 79888753    234456678999999999999999   9999999999999975       467


Q ss_pred             eeEccccccc
Q 002875          743 PHLAEFGFKY  752 (872)
Q Consensus       743 ~ki~dfg~~~  752 (872)
                      +.++||+-++
T Consensus       184 ~~LIDl~r~~  193 (268)
T PRK15123        184 LSVIDLHRAQ  193 (268)
T ss_pred             EEEEECCccc
Confidence            8999999764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.64  E-value=1.8e-09  Score=108.86  Aligned_cols=234  Identities=19%  Similarity=0.229  Sum_probs=142.1

Q ss_pred             CCCCcEEECCCCCCccc----CCccccCCCCCCEEECcCCc---CcccCC-------ccccCCCCCcEEECcCCcCcccc
Q 002875           17 FNELVDLNLSHNSFSGQ----FPVEIFNLTSLISLDISRNN---FSGHFP-------GGIQSLRNLLVLDAFSNSFSGSV   82 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~---i~~~~~-------~~~~~l~~L~~LdL~~n~l~~~~   82 (872)
                      +..++.|+||+|.+...    +...+.+.++|+.-++|.-.   ....+|       .++...++|++||||.|-+.-..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            56899999999998632    23445678899999988542   222333       34666789999999999887444


Q ss_pred             Ccc----ccCCCCCCEEEccCCcccccCC-------------cccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEc
Q 002875           83 PAE----ISQLEHLKVLNLAGSYFSGPIP-------------SQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEI  145 (872)
Q Consensus        83 p~~----~~~L~~L~~L~L~~n~~~~~~p-------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l  145 (872)
                      +..    +..++.|++|.|.+|.+...-.             .-.++-+.|+++...+|++.......            
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~------------  176 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA------------  176 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH------------
Confidence            443    4678999999999997742211             12334456667766666653211110            


Q ss_pred             cCccCcccCCccccCCCCCcEEEeecCCCcc----cCCccCcCCCCCCEEEccCCCCccc----CCcccccCCCCCEEeC
Q 002875          146 GYNFYQGNIPWQLGNMSEVQYLDIAGANLSG----SIPKELSNLTKLESLFLFRNQLAGQ----VPWEFSRVTTLKSLDL  217 (872)
Q Consensus       146 ~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L  217 (872)
                              +-..+...+.|+.+.++.|.+..    .+...+..+++|+.|||.+|-++..    +...+..+++|+.|++
T Consensus       177 --------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  177 --------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             --------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence                    11123334455555555555431    1223345566777777777766532    1223455667777777


Q ss_pred             cCCCCcCcCCccc-----cCCCCCCEEEcccccCCCC----CCccccCCCCcceeecccccc
Q 002875          218 SDNRLSGPIPESF-----ADLKNLRLLSLMYNEMSGT----VPESLVQLPSLEILFIWNNYF  270 (872)
Q Consensus       218 ~~N~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l  270 (872)
                      ++|.+......+|     ...++|++|.+.+|.++..    +...+...+.|..|++++|.+
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            7777664333222     2366778888888877632    112334567788888888877

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.60  E-value=6.4e-07  Score=95.44  Aligned_cols=163  Identities=17%  Similarity=0.212  Sum_probs=120.0

Q ss_pred             CCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEec----CCeeEEEEcccCC-CChHH
Q 002875          620 QSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYN----RHQAYLLYDYLPN-GNLSE  692 (872)
Q Consensus       620 ~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lv~ey~~~-g~L~~  692 (872)
                      .....||+.. -||..|..|++.-.+ ........-++.++++.|+|||++.+++.+    +...++||+|+|+ ++|.+
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d  367 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYD  367 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHH
Confidence            3456799874 689999999993221 122233445778899999999999999874    3468999999997 66766


Q ss_pred             HhhC-----------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          693 KIRT-----------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       693 ~l~~-----------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      +-..                 ..+.+..|.++.|++.||.++|+.   |..-+-+-+.+|+++.+.+++|+..|+.....
T Consensus       368 ~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~  444 (655)
T KOG3741|consen  368 LYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDVLQ  444 (655)
T ss_pred             HHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceeeec
Confidence            5421                 123466789999999999999999   99999999999999998888888888765543


Q ss_pred             ccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCC
Q 002875          756 LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR  800 (872)
Q Consensus       756 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~  800 (872)
                      ...         +   +....   -.+-|.=.+|.+++.|.||..
T Consensus       445 ~d~---------~---~~le~---~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  445 EDP---------T---EPLES---QQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             CCC---------C---cchhH---HhhhhHHHHHHHHHHHhhccc
Confidence            322         0   11111   113488899999999999864

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.48  E-value=5.2e-08  Score=111.80  Aligned_cols=236  Identities=17%  Similarity=0.119  Sum_probs=140.9

Q ss_pred             hhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          613 CEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      .+-+-+|.++.++-+.- .+|-..++|.....    ..+.+..+.+-.+.-..+||-+|+..--+......+||++|+.+
T Consensus       809 ~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~~~~~~  888 (1205)
T KOG0606|consen  809 TKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVGHYLNG  888 (1205)
T ss_pred             cccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcchhhHHhcc
Confidence            33455677777765442 23434444443321    11122222222222223456666554444445678999999999


Q ss_pred             CChHHHhhCCCC--HHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc--------
Q 002875          688 GNLSEKIRTKRD--WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA--------  757 (872)
Q Consensus       688 g~L~~~l~~~~~--~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~--------  757 (872)
                      |+|...++....  ..-.......+.++.+|||..   .+.|||+||.|+++..++..+++|||........        
T Consensus       889 ~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg  965 (1205)
T KOG0606|consen  889 GDLPSKLHNSGCLSAEPARSPILERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSG  965 (1205)
T ss_pred             CCchhhhhcCCCcccccccchhHHHHhhhhccccc---hhhcccccccchhhcccCCcccCccccccccccccCcCCccc
Confidence            999999987542  222233445577889999998   7999999999999999999999999843211000        


Q ss_pred             --------------------C-----CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc
Q 002875          758 --------------------D-----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP  812 (872)
Q Consensus       758 --------------------~-----~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~  812 (872)
                                          .     .....++.-|.+||...+......+|.|+.|++++|.++|..||......+.  
T Consensus       966 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~-- 1043 (1205)
T KOG0606|consen  966 PSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQI-- 1043 (1205)
T ss_pred             ccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhh--
Confidence                                0     0011123335556666666677778999999999999999999875443211  


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHH
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME  858 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~  858 (872)
                          ++.+.... ++.+....+....+-+++..-+..+|.+|-.|.
T Consensus      1044 ----f~ni~~~~-~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1044 ----FENILNRD-IPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             ----hhccccCC-CCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence                12222211 111111222333445556666778899987665

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.44  E-value=9.1e-07  Score=87.55  Aligned_cols=130  Identities=15%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch-----------------------hHHHHHHHHHHhhccCCC--Cce
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT-----------------------RIKIVSEFITRIGTVRHK--NLI  666 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~-----------------------~~~~~~~e~~~l~~l~H~--niv  666 (872)
                      ..+.||.|.-|.||.|..+.|.++|||.=+.+..                       .....++|.++|.++.-.  .|-
T Consensus        95 iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP  174 (304)
T COG0478          95 IGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVP  174 (304)
T ss_pred             hccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCCC
Confidence            5688999999999999999999999996543221                       133467888899888544  455


Q ss_pred             eEEEEEecCCeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEc
Q 002875          667 RLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA  746 (872)
Q Consensus       667 ~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~  746 (872)
                      +.+++    +.-.+||||.+|-.|...--...+..+   ++..|++-+.-.-..   ||||+|+.+=||+++++|.+.++
T Consensus       175 ~P~~~----nRHaVvMe~ieG~eL~~~r~~~en~~~---il~~il~~~~~~~~~---GiVHGDlSefNIlV~~dg~~~vI  244 (304)
T COG0478         175 KPIAW----NRHAVVMEYIEGVELYRLRLDVENPDE---ILDKILEEVRKAYRR---GIVHGDLSEFNILVTEDGDIVVI  244 (304)
T ss_pred             Ccccc----ccceeeeehcccceeecccCcccCHHH---HHHHHHHHHHHHHHc---CccccCCchheEEEecCCCEEEE
Confidence            55443    456899999998555443211222233   333333333222245   99999999999999999999999


Q ss_pred             ccccc
Q 002875          747 EFGFK  751 (872)
Q Consensus       747 dfg~~  751 (872)
                      ||--+
T Consensus       245 DwPQ~  249 (304)
T COG0478         245 DWPQA  249 (304)
T ss_pred             eCccc
Confidence            98743

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.38  E-value=8.8e-07  Score=98.81  Aligned_cols=143  Identities=18%  Similarity=0.194  Sum_probs=91.6

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccchh-------------------------------HH--
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR-------------------------------IK--  648 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~-------------------------------~~--  648 (872)
                      +++..+|+   .+-++.++-|.||+|++++|+.||||+..++-.+                               .+  
T Consensus       122 ee~F~eF~---~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~  198 (517)
T COG0661         122 EELFSEFE---PEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEF  198 (517)
T ss_pred             HHHHHHcC---CCchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHH
Confidence            34444443   4678889999999999999999999998664211                               01  


Q ss_pred             --------HHHHHHHHhhccC-----CCCceeEEEEEecCCeeEEEEcccCCCChHHHh--hCC-CCHHHHHHHHHHHHH
Q 002875          649 --------IVSEFITRIGTVR-----HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI--RTK-RDWAAKYKIVLGVAR  712 (872)
Q Consensus       649 --------~~~~e~~~l~~l~-----H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l--~~~-~~~~~~~~i~~~i~~  712 (872)
                              .+..|..-+.+++     .|+|.--.=|.+-.....|+|||++|-.+.+..  +.. .+   +..++..+++
T Consensus       199 ~~~l~~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d---~k~ia~~~~~  275 (517)
T COG0661         199 EKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGID---RKELAELLVR  275 (517)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCC---HHHHHHHHHH
Confidence                    1233444444332     344332222222345678999999998887773  332 23   2333333333


Q ss_pred             HH-HHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          713 GL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       713 gl-~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      +. .-+-..   +++|.|..|.||+++.++.....|||+...
T Consensus       276 ~f~~q~~~d---gffHaDpHpGNi~v~~~g~i~~lDfGi~g~  314 (517)
T COG0661         276 AFLRQLLRD---GFFHADPHPGNILVRSDGRIVLLDFGIVGR  314 (517)
T ss_pred             HHHHHHHhc---CccccCCCccceEEecCCcEEEEcCcceec
Confidence            22 112223   899999999999999999999999998654

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.24  E-value=5.8e-06  Score=82.44  Aligned_cols=121  Identities=21%  Similarity=0.256  Sum_probs=87.5

Q ss_pred             CCCcEEEEEEeecc---c-----hhHHHHHHHHHHhhccCCC--CceeEEEEEecC----CeeEEEEcccCCC-ChHHHh
Q 002875          630 PTGITVSVKKIEWG---A-----TRIKIVSEFITRIGTVRHK--NLIRLLGFCYNR----HQAYLLYDYLPNG-NLSEKI  694 (872)
Q Consensus       630 ~~g~~vavK~~~~~---~-----~~~~~~~~e~~~l~~l~H~--niv~l~~~~~~~----~~~~lv~ey~~~g-~L~~~l  694 (872)
                      ..++.+-+|.....   .     .......+|...+.++...  .+.+.+++.+..    ...++|+|++++- +|.+++
T Consensus        30 ~~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~  109 (206)
T PF06293_consen   30 LVGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLL  109 (206)
T ss_pred             ccceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHH
Confidence            34556666654321   0     1233456677777666533  344566666542    2458999999984 799988


Q ss_pred             hC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC---CeeEcccccccc
Q 002875          695 RT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM---EPHLAEFGFKYL  753 (872)
Q Consensus       695 ~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~---~~ki~dfg~~~~  753 (872)
                      ..  ..+...+..++.++++.++-||..   +|+|+|+++.|||++.+.   .+.++||+-++.
T Consensus       110 ~~~~~~~~~~~~~ll~~l~~~i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  110 QQWEQLDPSQRRELLRALARLIAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HhhcccchhhHHHHHHHHHHHHHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            75  234556778999999999999999   999999999999999876   799999997654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=3.7e-08  Score=107.98  Aligned_cols=197  Identities=22%  Similarity=0.272  Sum_probs=103.1

Q ss_pred             CCCCcEEECCCCCCcccC-CccccCCCCCCEEECcCCcCcccCCccccCCC-CCcEEECcCCcCcc----------ccCc
Q 002875           17 FNELVDLNLSHNSFSGQF-PVEIFNLTSLISLDISRNNFSGHFPGGIQSLR-NLLVLDAFSNSFSG----------SVPA   84 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~LdL~~n~l~~----------~~p~   84 (872)
                      +..+++|.+-+---.+-. |-.++.+..||.|.|.++.|..  -.++..++ .|+.|- .+|.+..          .+-.
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhcccccc
Confidence            344455554443322211 5566777788888887777653  11222221 233331 1222110          0000


Q ss_pred             cccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCC
Q 002875           85 EISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV  164 (872)
Q Consensus        85 ~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L  164 (872)
                      ++. -..|.+-+.+.|.+. .+..++.-++.|+.|+|++|+++..  +.+..+.+|++|||++|.+....-...... .|
T Consensus       160 s~~-Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L  234 (1096)
T KOG1859|consen  160 SPV-WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KL  234 (1096)
T ss_pred             chh-hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hh
Confidence            110 124556666666665 3445566666667777777766543  256666667777777766553221112222 26


Q ss_pred             cEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCC-cccccCCCCCEEeCcCCCCc
Q 002875          165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP-WEFSRVTTLKSLDLSDNRLS  223 (872)
Q Consensus       165 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~  223 (872)
                      +.|.+++|.++..  ..+.+|.+|+.||+++|-|.+-.. ..++.+..|+.|+|.+|.+.
T Consensus       235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777777776532  245667777777777776654221 11345566777777777764

>PRK09902 hypothetical protein; Provisional

Probab=98.12  E-value=3.6e-05  Score=74.81  Aligned_cols=133  Identities=11%  Similarity=0.058  Sum_probs=97.8

Q ss_pred             hccCCCCCceeeeecCCCcEEEEEEeecc-------chhHHHHHHHHHHhhccCCC--CceeEEEEEe---cC--CeeEE
Q 002875          615 EAARPQSAAGCKAVLPTGITVSVKKIEWG-------ATRIKIVSEFITRIGTVRHK--NLIRLLGFCY---NR--HQAYL  680 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~~g~~vavK~~~~~-------~~~~~~~~~e~~~l~~l~H~--niv~l~~~~~---~~--~~~~l  680 (872)
                      --|+|+-+-|++-.+ +|+.+-+|+-...       .-....|.+|+..+.++..-  .+.+.. ++.   .+  -..+|
T Consensus        25 N~~rgG~SgV~r~~~-~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~L  102 (216)
T PRK09902         25 NYRRNGMSGVQCVER-NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALL  102 (216)
T ss_pred             CcCCCCcceEEEEEe-CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEE
Confidence            346788888988665 4457889987521       12356788999998887632  234444 332   11  24689


Q ss_pred             EEcccCC-CChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC--eeEccccccc
Q 002875          681 LYDYLPN-GNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME--PHLAEFGFKY  752 (872)
Q Consensus       681 v~ey~~~-g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~--~ki~dfg~~~  752 (872)
                      |+|-+++ -||.+++...    .+..++..+..++++.++-||..   ++.|+|+-+.||+++.++.  ++++||--++
T Consensus       103 VTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        103 VTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             EEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            9997764 5898888652    25566788999999999999999   9999999999999986666  8999998654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=3.8e-07  Score=90.02  Aligned_cols=62  Identities=19%  Similarity=0.189  Sum_probs=28.9

Q ss_pred             CCCEEeCcCCCCcCc-CCccccCCCCCCEEEcccccCCCCC-CccccCCCCcceeecccccccc
Q 002875          211 TLKSLDLSDNRLSGP-IPESFADLKNLRLLSLMYNEMSGTV-PESLVQLPSLEILFIWNNYFSG  272 (872)
Q Consensus       211 ~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~  272 (872)
                      ++..+-+..|.+... ..+.+..++.+..|+|+.|++.... -+.+..+++|..|.+++|.+..
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            344444444444321 1223344444445555555554321 1345555666666666665543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.09  E-value=1.1e-06  Score=97.43  Aligned_cols=145  Identities=22%  Similarity=0.276  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcc------------cccccCchhhhc
Q 002875          708 LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPA------------KIAWTESGEFYN  775 (872)
Q Consensus       708 ~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~------------~~~~~~~~e~~~  775 (872)
                      .+++.|++|+|.+  +++||++|.|++|.++..+..|++.|+++........ .+.            .-..+.+||+..
T Consensus       106 ~~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~-~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  106 GNVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTE-YPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hcccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCc-cccccCCCCCChhhccCcccccchhhc
Confidence            3455999999986  4899999999999999999999999998643322110 100            111244567776


Q ss_pred             ccCCcccccchhHHHHHHHHHcCCCCCCCCC-CCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCC
Q 002875          776 AMKEEMYMDVYGFGEIILEILTNGRLTNAGS-SLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDR  854 (872)
Q Consensus       776 ~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R  854 (872)
                      ....+.++|+||+||++|-+..|+.+...+. ............+.   .....+   .+...++++-+.+.+..++..|
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~---~~~~~s---~~~p~el~~~l~k~l~~~~~~r  256 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNA---GAFGYS---NNLPSELRESLKKLLNGDSAVR  256 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhccccc---cccccc---ccCcHHHHHHHHHHhcCCcccC
Confidence            6677888999999999999985555433222 11111111111010   001111   2233455566677888999999


Q ss_pred             CCHHHHH
Q 002875          855 PSMEEAL  861 (872)
Q Consensus       855 pt~~~v~  861 (872)
                      |++.++.
T Consensus       257 p~~~~l~  263 (700)
T KOG2137|consen  257 PTLDLLL  263 (700)
T ss_pred             cchhhhh
Confidence            9877654

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.07  E-value=4.4e-05  Score=77.12  Aligned_cols=135  Identities=11%  Similarity=0.071  Sum_probs=84.2

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCC--ceeEEEEEecCCeeEEEEcccCCCC-
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKN--LIRLLGFCYNRHQAYLLYDYLPNGN-  689 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~n--iv~l~~~~~~~~~~~lv~ey~~~g~-  689 (872)
                      -+.+|.|..+.||+.   .|..+++|...... ......+|.+.++.+..-.  +.+.++++...+...+||||++|.+ 
T Consensus         6 ~~~i~~G~t~~~y~~---~~~~~VlR~~~~~~-~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~   81 (226)
T TIGR02172         6 WTQTGEGGNGESYTH---KTGKWMLKLYNPGF-DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRS   81 (226)
T ss_pred             heeecCCCCcceeEe---cCCCEEEEeCCCCC-CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccc
Confidence            357899999999984   35567888876432 3445688888888876433  3567777777777889999999863 


Q ss_pred             hHHHh---------------------hC----CCCHHHHH-HHHH----------HHHH-HHHHHhhC-CCCCcccCCCC
Q 002875          690 LSEKI---------------------RT----KRDWAAKY-KIVL----------GVAR-GLCFLHHD-CYPAIPHGDLK  731 (872)
Q Consensus       690 L~~~l---------------------~~----~~~~~~~~-~i~~----------~i~~-gl~~lH~~-~~~~i~Hrdlk  731 (872)
                      +.+.+                     +.    ......+. .+..          .+.+ ..++|... ..+.++|+|+.
T Consensus        82 ~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~  161 (226)
T TIGR02172        82 FSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQ  161 (226)
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCC
Confidence            22111                     11    00111110 0000          0111 11222211 12467899999


Q ss_pred             CCCeeeCCCCCeeEccccccc
Q 002875          732 ASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       732 ~~Nill~~~~~~ki~dfg~~~  752 (872)
                      |.||++++++ +.|.||+.+.
T Consensus       162 ~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       162 IGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CCcEEEcCCC-cEEEechhcC
Confidence            9999999887 9999999763

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.01  E-value=5.6e-05  Score=84.14  Aligned_cols=145  Identities=18%  Similarity=0.209  Sum_probs=88.6

Q ss_pred             hhhHHhhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccchh--------------------------------HH
Q 002875          601 ANDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR--------------------------------IK  648 (872)
Q Consensus       601 ~~~~~~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~--------------------------------~~  648 (872)
                      .+++...|+   .+-||.-..|.||+|++++|+.||||+-.++-..                                .+
T Consensus       157 ie~if~~f~---~~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~  233 (538)
T KOG1235|consen  157 IEDIFSEFD---EEPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAK  233 (538)
T ss_pred             HHHHHHhcC---cchhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHh
Confidence            344445554   5668888999999999999999999987653211                                01


Q ss_pred             ------HHHHHHHHhh----ccCCCCc---eeEEEEEec-CCeeEEEEcccCCCChHHH--hhC-CCCHHHHHHHHHHHH
Q 002875          649 ------IVSEFITRIG----TVRHKNL---IRLLGFCYN-RHQAYLLYDYLPNGNLSEK--IRT-KRDWAAKYKIVLGVA  711 (872)
Q Consensus       649 ------~~~~e~~~l~----~l~H~ni---v~l~~~~~~-~~~~~lv~ey~~~g~L~~~--l~~-~~~~~~~~~i~~~i~  711 (872)
                            .|.+|.+-..    .++|-+.   |..=.++++ .....|+||||+|.-+.|.  +.+ ..+..   .|+.-+.
T Consensus       234 ~L~~ELDF~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~---~i~~~l~  310 (538)
T KOG1235|consen  234 SLPQELDFTKEAKNAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPH---DILNKLV  310 (538)
T ss_pred             hhHhhcchHHHHHhHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHH---HHHHHHH
Confidence                  1233333332    2345551   112123332 3467899999999877654  333 22333   3333333


Q ss_pred             HHHHHHhhCCCCCcccCCCCCCCeeeCC----CCCeeEcccccccc
Q 002875          712 RGLCFLHHDCYPAIPHGDLKASNIVFDE----NMEPHLAEFGFKYL  753 (872)
Q Consensus       712 ~gl~~lH~~~~~~i~Hrdlk~~Nill~~----~~~~ki~dfg~~~~  753 (872)
                      ++  |++.--..|++|.|=.|.||++..    ++.+.+-|||+...
T Consensus       311 ~~--~~~qIf~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~  354 (538)
T KOG1235|consen  311 EA--YLEQIFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV  354 (538)
T ss_pred             HH--HHHHHHhcCCccCCCCCCcEEEecCCCCCccEEEEccccccc
Confidence            32  222111128999999999999984    67899999998754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.99  E-value=8e-08  Score=105.42  Aligned_cols=105  Identities=29%  Similarity=0.345  Sum_probs=71.2

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCc-cccCCCCCCEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPA-EISQLEHLKVL   95 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~-~~~~L~~L~~L   95 (872)
                      ++.|.+-++++|++. ..-.++.-++.|+.|||++|+++...  .+..|++|++|||++|.+.. +|. +...+. |+.|
T Consensus       163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L  237 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLL  237 (1096)
T ss_pred             hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heee
Confidence            456777777788776 33456677777888888888777542  67777788888888887763 332 333444 7777


Q ss_pred             EccCCcccccCCcccCCCCCCcEeeCccCcCCc
Q 002875           96 NLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND  128 (872)
Q Consensus        96 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~  128 (872)
                      .+++|.++..  ..+.+|++|+.||++.|-|.+
T Consensus       238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eecccHHHhh--hhHHhhhhhhccchhHhhhhc
Confidence            7777777632  346677777777777776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	872
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-52
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-52
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-09
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		3e-30
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		3e-30
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-16
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-16
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		3e-16
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		4e-14
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		7e-14
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		7e-14
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-13
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		2e-12
3b2t_A	311	Structure Of Phosphotransferase Length = 311		4e-12
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-12
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-12
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		4e-12
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		4e-12
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-12
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		6e-12
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-12
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		9e-12
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-11
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-11
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-11
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-11
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-11
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		2e-11
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-11
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		2e-11
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		2e-11
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		2e-11
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-11
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		2e-11
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-11
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		4e-11
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		5e-11
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		1e-10
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		1e-10
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-10
3a4o_X	286	Lyn Kinase Domain Length = 286		2e-09
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		3e-09
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		3e-09
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		6e-09
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		6e-09
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		6e-09
2pl0_A	289	Lck Bound To Imatinib Length = 289		6e-09
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		6e-09
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		6e-09
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		6e-09
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		6e-09
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		8e-09
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		8e-09
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		8e-09
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		8e-09
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		8e-09
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		8e-09
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		8e-09
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		8e-09
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		8e-09
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		8e-09
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		8e-09
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		9e-09
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		9e-09
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		9e-09
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		9e-09
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		9e-09
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		9e-09
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		9e-09
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-08
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-08
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		3e-08
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		3e-08
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		3e-08
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		3e-08
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		4e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-08
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-08
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		8e-08
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		9e-08
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		9e-08
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		9e-08
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		2e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-07
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-07
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		2e-07
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-07
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		2e-07
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-07
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-07
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		3e-07
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		4e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-07
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-07
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		4e-07
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		5e-07
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		6e-07
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-07
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		6e-07
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		6e-07
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		6e-07
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		6e-07
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		6e-07
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		8e-07
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		8e-07
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		9e-07
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		9e-07
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		9e-07
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		9e-07
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		1e-06
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		1e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		1e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		1e-06
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		1e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		1e-06
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		1e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		1e-06
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		1e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-06
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-06
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-06
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-06
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		3e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-06
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		3e-06
3kmw_A	271	Crystal Structure Of The IlkALPHA-Parvin Core Compl		3e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		7e-06
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		7e-06
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		8e-06
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		8e-06
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		9e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		9e-06
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		9e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-05
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		1e-05
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		1e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-05
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-05
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-05
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-05
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-05
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-05
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-05
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		2e-05
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		2e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-05
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-05
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		3e-05
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		3e-05
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		3e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-05
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		3e-05
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		3e-05
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-05
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-05
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		4e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		4e-05
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		4e-05
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		4e-05
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		5e-05
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		5e-05
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		5e-05
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		5e-05
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		5e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		5e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		5e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		5e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		5e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		5e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		5e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		5e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		6e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		6e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		6e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		6e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		6e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		6e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		6e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		7e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		8e-05
2buj_A	317	Crystal Structure Of The Human Serine-Threonine Kin		8e-05
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		8e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		8e-05
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		1e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		2e-04
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		2e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		2e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-04
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		2e-04
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		2e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		2e-04
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		2e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		2e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		2e-04
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		3e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		3e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		3e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		3e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		3e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		3e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		3e-04
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		4e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		4e-04
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		4e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-04
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-04
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		5e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		5e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		5e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		6e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		6e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		6e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		7e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		7e-04
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		7e-04
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		7e-04
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		7e-04
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		7e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		8e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		8e-04
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		8e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		8e-04
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		9e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  202 bits (515), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 175/555 (31%), Positives = 265/555 (47%), Gaps = 53/555 (9%)
Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
           L  L++S N  SG F   I   T L  L+IS N F G  P     L++L  L    N F+
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFT 279
Query: 80  GSVPAEIS-QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGML 137
           G +P  +S   + L  L+L+G++F G +P  FGS   LE L L+ N  + ++P + L  +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 138 KTVTHMEIGYNFYQGNIPWQLGNMS-EVQYLDIAGANLSGSIPKELSNLTK--LESLFLF 194
           + +  +++ +N + G +P  L N+S  +  LD++  N SG I   L    K  L+ L+L 
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 254
            N   G++P   S  + L SL LS N LSG IP S   L  LR L L  N + G +P+ L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 255 VQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILF 314
           + + +LE L +  N  +G +P  L   + L W+ +S N   G IP  I   G L  L + 
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI---GRLENLAI- 515
Query: 315 SNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI 374
                               L+L +NSFSG IP +      + ++DL+ N F G IP  +
Sbjct: 516 --------------------LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 375 -NQASKL--------EYFNVSNN------PKLGGMIPAQTWSLPSLQNFSA-SACNITGN 418
             Q+ K+         Y  + N+         G ++  Q      L   S  + CNIT  
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 419 L------PPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLAR 472
           +      P F +  S+  ++   N LSG IP+ + +   L  ++L +N + GSIP+ +  
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 473 LPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNP 532
           L  L +LDLS N L G+IP    + + LT +++S N++SG IP          + +  NP
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 735
Query: 533 KLCGAPLQPCHASVA 547
            LCG PL  C  S A
Sbjct: 736 GLCGYPLPRCDPSNA 750

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 17/236 (7%)
Query: 289 VSTNNFNGSIPPDICSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPL 348
           +S ++ NGS+    CS   L  L L  N+ +G                L  +S + + P 
Sbjct: 81  LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 349 KFS---QLPDINYIDLSRNGFTGG-----IPTDINQASKLEYFNVSNNPKLGGMIPAQTW 400
           K S   +L  +  +DLS N  +G      + +D     +L++  +S N K+ G +     
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGN-KISGDVDVSRC 196
Query: 401 SLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANN 460
              +L+    S+ N +  +P    C ++  ++   N LSG    ++S C EL+ +++++N
Sbjct: 197 V--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 461 KLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKF-GSCSSLTVLNVSFNDISGSIP 515
           + +G IP +   L  L  L L+ N  +G+IP    G+C +LT L++S N   G++P
Sbjct: 255 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  202 bits (514), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 175/555 (31%), Positives = 265/555 (47%), Gaps = 53/555 (9%)
Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
           L  L++S N  SG F   I   T L  L+IS N F G  P     L++L  L    N F+
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFT 282
Query: 80  GSVPAEIS-QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGML 137
           G +P  +S   + L  L+L+G++F G +P  FGS   LE L L+ N  + ++P + L  +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 138 KTVTHMEIGYNFYQGNIPWQLGNMS-EVQYLDIAGANLSGSIPKELSNLTK--LESLFLF 194
           + +  +++ +N + G +P  L N+S  +  LD++  N SG I   L    K  L+ L+L 
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 254
            N   G++P   S  + L SL LS N LSG IP S   L  LR L L  N + G +P+ L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 255 VQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILF 314
           + + +LE L +  N  +G +P  L   + L W+ +S N   G IP  I   G L  L + 
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI---GRLENLAI- 518
Query: 315 SNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI 374
                               L+L +NSFSG IP +      + ++DL+ N F G IP  +
Sbjct: 519 --------------------LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 375 -NQASKL--------EYFNVSNNPK------LGGMIPAQTWSLPSLQNFSA-SACNITGN 418
             Q+ K+         Y  + N+         G ++  Q      L   S  + CNIT  
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 419 L------PPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLAR 472
           +      P F +  S+  ++   N LSG IP+ + +   L  ++L +N + GSIP+ +  
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678
Query: 473 LPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNP 532
           L  L +LDLS N L G+IP    + + LT +++S N++SG IP          + +  NP
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738
Query: 533 KLCGAPLQPCHASVA 547
            LCG PL  C  S A
Sbjct: 739 GLCGYPLPRCDPSNA 753

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 17/236 (7%)
Query: 289 VSTNNFNGSIPPDICSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPL 348
           +S ++ NGS+    CS   L  L L  N+ +G                L  +S + + P 
Sbjct: 84  LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 349 KFS---QLPDINYIDLSRNGFTGG-----IPTDINQASKLEYFNVSNNPKLGGMIPAQTW 400
           K S   +L  +  +DLS N  +G      + +D     +L++  +S N K+ G +     
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGN-KISGDVDVSRC 199
Query: 401 SLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANN 460
              +L+    S+ N +  +P    C ++  ++   N LSG    ++S C EL+ +++++N
Sbjct: 200 V--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 461 KLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKF-GSCSSLTVLNVSFNDISGSIP 515
           + +G IP +   L  L  L L+ N  +G+IP    G+C +LT L++S N   G++P
Sbjct: 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 136/262 (51%), Gaps = 22/262 (8%)
Query: 626 KAVLPTGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY 682
           K  L  G  V+VK+++   T+   ++  +E +  I    H+NL+RL GFC    +  L+Y
Sbjct: 48  KGRLADGXLVAVKRLKEERTQGGELQFQTE-VEMISMAVHRNLLRLRGFCMTPTERLLVY 106
Query: 683 DYLPNGNLSEKIRTK------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
            Y+ NG+++  +R +       DW  + +I LG ARGL +LH  C P I H D+KA+NI+
Sbjct: 107 PYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANIL 166
Query: 737 FDENMEPHLAEFGFKYLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEIIL 793
            DE  E  + +FG   L    D      +       + E+ +  K     DV+G+G ++L
Sbjct: 167 LDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLL 226
Query: 794 EILTN------GRLTNAGSSLQNKPIDGLLGEMYNEN--EVGSSSSLQD-EIKLVLDVAL 844
           E++T        RL N    +    + GLL E   E   +V    + +D E++ ++ VAL
Sbjct: 227 ELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVAL 286
Query: 845 LCTRSTPSDRPSMEEALKLLSG 866
           LCT+S+P +RP M E +++L G
Sbjct: 287 LCTQSSPMERPKMSEVVRMLEG 308

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 136/262 (51%), Gaps = 22/262 (8%)
Query: 626 KAVLPTGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY 682
           K  L  G  V+VK+++    +   ++  +E +  I    H+NL+RL GFC    +  L+Y
Sbjct: 56  KGRLADGTLVAVKRLKEERXQGGELQFQTE-VEMISMAVHRNLLRLRGFCMTPTERLLVY 114
Query: 683 DYLPNGNLSEKIRTK------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
            Y+ NG+++  +R +       DW  + +I LG ARGL +LH  C P I H D+KA+NI+
Sbjct: 115 PYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANIL 174
Query: 737 FDENMEPHLAEFGFKYLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEIIL 793
            DE  E  + +FG   L    D      +  T    + E+ +  K     DV+G+G ++L
Sbjct: 175 LDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLL 234
Query: 794 EILTN------GRLTNAGSSLQNKPIDGLLGEMYNEN--EVGSSSSLQD-EIKLVLDVAL 844
           E++T        RL N    +    + GLL E   E   +V    + +D E++ ++ VAL
Sbjct: 235 ELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVAL 294
Query: 845 LCTRSTPSDRPSMEEALKLLSG 866
           LCT+S+P +RP M E +++L G
Sbjct: 295 LCTQSSPMERPKMSEVVRMLEG 316

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 120/254 (47%), Gaps = 11/254 (4%)
Query: 163 EVQYLDIAGANLSGS--IPKELSNLTKLESLFLFR-NQLAGQVPWEFSRVTTLKSLDLSD 219
            V  LD++G NL     IP  L+NL  L  L++   N L G +P   +++T L  L ++ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG 279
             +SG IP+  + +K L  L   YN +SGT+P S+  LP+L  +    N  SG++P++ G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 280 RNSKL-RWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGXXXXXXXXXXXXVRLRLE 338
             SKL   + +S N   G IPP   +  + F + L  N   G             ++ L 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 339 DNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQ 398
            NS + ++  K     ++N +DL  N   G +P  + Q   L   NVS N  L G IP  
Sbjct: 230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQG 287
Query: 399 TWSLPSLQNFSASA 412
                +LQ F  SA
Sbjct: 288 G----NLQRFDVSA 297

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 114/294 (38%), Gaps = 50/294 (17%)
Query: 250 VPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLF 309
           +P SL  LP L  L+I                          NN  G IPP I     L 
Sbjct: 68  IPSSLANLPYLNFLYIG-----------------------GINNLVGPIPPAIAKLTQLH 104
Query: 310 KLILFSNNFTGXXXXXXXXXXXXVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGG 369
            L +   N +G            V L    N+ SG +P   S LP++  I    N  +G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 370 IPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSIS 429
           IP      SKL                          + + S   +TG +PP  +  +++
Sbjct: 165 IPDSYGSFSKL------------------------FTSMTISRNRLTGKIPPTFANLNLA 200
Query: 430 VIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEV-LARLPVLGVLDLSHNSLSG 488
            ++   N L G       +    ++I LA N L   + +V L++   L  LDL +N + G
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYG 258
Query: 489 QIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPC 542
            +P        L  LNVSFN++ G IP G  L+    SAYA N  LCG+PL  C
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 40/228 (17%)
Query: 661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI------RTKRDWAAKYKIVLGVARGL 714
           RH +L+ L+GFC  R++  L+Y Y+ NGNL   +           W  + +I +G ARGL
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 715 CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---S 770
            +LH     AI H D+K+ NI+ DEN  P + +FG  K  T+L        +  T     
Sbjct: 153 HYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYID 209
Query: 771 GEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS 830
            E++   +     DVY FG ++ E+L       A S++    +  L  EM N  E    S
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVLC------ARSAI----VQSLPREMVNLAEWAVES 259
Query: 831 SLQDEIKLVL-----------------DVALLCTRSTPSDRPSMEEAL 861
               +++ ++                 D A+ C   +  DRPSM + L
Sbjct: 260 HNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 40/228 (17%)
Query: 661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI------RTKRDWAAKYKIVLGVARGL 714
           RH +L+ L+GFC  R++  L+Y Y+ NGNL   +           W  + +I +G ARGL
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 715 CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTE---S 770
            +LH     AI H D+K+ NI+ DEN  P + +FG  K  T+L        +  T     
Sbjct: 153 HYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYID 209
Query: 771 GEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS 830
            E++   +     DVY FG ++ E+L       A S++    +  L  EM N  E    S
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVLC------ARSAI----VQSLPREMVNLAEWAVES 259
Query: 831 SLQDEIKLVL-----------------DVALLCTRSTPSDRPSMEEAL 861
               +++ ++                 D A+ C   +  DRPSM + L
Sbjct: 260 HNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 22/180 (12%)
Query: 634 TVSVKKIEWGATRIKIVSEFITR--------IGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
           TV+VKK+   A  + I +E + +        +   +H+NL+ LLGF  +     L+Y Y+
Sbjct: 56  TVAVKKL---AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYM 112
Query: 686 PNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           PNG+L +++          W  + KI  G A G+ FLH + +    H D+K++NI+ DE 
Sbjct: 113 PNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEA 169
Query: 741 MEPHLAEFGFKYLTQ-LADGSFPAKIAWTESGEFYNAMKEEMY--MDVYGFGEIILEILT 797
               +++FG    ++  A     ++I  T +     A++ E+    D+Y FG ++LEI+T
Sbjct: 170 FTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 229

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 634 TVSVKKIEWGATRIKIVSEFITR--------IGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
           TV+VKK+   A  + I +E + +        +   +H+NL+ LLGF  +     L+Y Y+
Sbjct: 56  TVAVKKL---AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYM 112
Query: 686 PNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           PNG+L +++          W  + KI  G A G+ FLH + +    H D+K++NI+ DE 
Sbjct: 113 PNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEA 169
Query: 741 MEPHLAEFGFKYLTQ-LADGSFPAKIAWTESGEFYNAMKEEMY--MDVYGFGEIILEILT 797
               +++FG    ++  A      +I  T +     A++ E+    D+Y FG ++LEI+T
Sbjct: 170 FTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 229

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
Query: 634 TVSVKKIEWGATRIKIVSEFITR--------IGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
           TV+VKK+   A  + I +E + +        +   +H+NL+ LLGF  +     L+Y Y+
Sbjct: 50  TVAVKKL---AAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYM 106
Query: 686 PNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           PNG+L +++          W  + KI  G A G+ FLH + +    H D+K++NI+ DE 
Sbjct: 107 PNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEA 163
Query: 741 MEPHLAEFGFKYLTQ-LADGSFPAKIAWTESGEFYNAMKEEMY--MDVYGFGEIILEILT 797
               +++FG    ++  A      +I  T +     A++ E+    D+Y FG ++LEI+T
Sbjct: 164 FTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIIT 223

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 634 TVSVKKIEWGATRIKIVSEFITR--------IGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
           TV+VKK+   A  + I +E + +            +H+NL+ LLGF  +     L+Y Y 
Sbjct: 47  TVAVKKL---AAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYX 103
Query: 686 PNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           PNG+L +++          W  + KI  G A G+ FLH + +    H D+K++NI+ DE 
Sbjct: 104 PNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEA 160
Query: 741 MEPHLAEFGFKYLTQ-LADGSFPAKIAWTESGEFYNAMKEEMY--MDVYGFGEIILEILT 797
               +++FG    ++  A     ++I  T +     A++ E+    D+Y FG ++LEI+T
Sbjct: 161 FTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGEITPKSDIYSFGVVLLEIIT 220

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 113 AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 171
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 172 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 227
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 228 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 285
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 286 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 339
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 340 D---CWHAVPSQRPTFKQLVEDLDRI 362

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 54  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 112
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 113 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 168
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 169 DLTARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 226
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 227 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 280
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 281 D---CWHAVPSQRPTFKQLVEDLDRI 303

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 67  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 182 DLAARNVLVTENNVMRIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 240 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 67  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIIHLLGACTQDGPLYVIVEYASK 125
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 240 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 56  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 114
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 115 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 170
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 171 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 228
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 229 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 282
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 283 D---CWHAVPSQRPTFKQLVEDLDRI 305

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 59  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 117
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 118 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 173
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 174 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 231
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 232 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 285
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 286 D---CWHAVPSQRPTFKQLVEDLDRI 308

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 67  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIITLLGACTQDGPLYVIVEYASK 125
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 240 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K I  GA   +   E    +  + H  L++L G C  +    L+++++ +G LS+ +
Sbjct: 37  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 96
Query: 695 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
           RT+R   A   ++   L V  G+ +L   C   + H DL A N +  EN    +++FG  
Sbjct: 97  RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 153
Query: 752 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 805
                   T      FP K A   S E ++  +     DV+ FG ++ E+ + G++    
Sbjct: 154 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 210
Query: 806 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
            S      D   G    +  + S+         V  +   C R  P DRP+    L+ L+
Sbjct: 211 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWRERPEDRPAFSRLLRQLA 262
Query: 866 GLKPHG 871
            +   G
Sbjct: 263 EIAESG 268

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 67  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y     +G  P K  W      ++ +    
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKNTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 240 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 113/265 (42%), Gaps = 44/265 (16%)
Query: 632 GITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
            +TV+VK ++  AT      +VSE        +HKN+I LLG C      Y++ +Y   G
Sbjct: 67  AVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 126
Query: 689 NLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHGD 729
           NL E +R +R    +Y   +                   +ARG+ +L    C     H D
Sbjct: 127 NLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HRD 182
Query: 730 LKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
           L A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +     
Sbjct: 183 LAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ- 239
Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++  
Sbjct: 240 SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRD 294
Query: 843 ALLCTRSTPSDRPSMEEALKLLSGL 867
              C  + PS RP+ ++ ++ L  +
Sbjct: 295 ---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++  Y   
Sbjct: 67  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVAYASK 125
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 240 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++  Y   
Sbjct: 67  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVGYASK 125
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG         Y  +  +G  P K  W      ++ +    
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 240 -SDVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K I  GA   +   E    +  + H  L++L G C  +    L+++++ +G LS+ +
Sbjct: 34  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 93
Query: 695 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
           RT+R   A   ++   L V  G+ +L   C   + H DL A N +  EN    +++FG  
Sbjct: 94  RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 150
Query: 752 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 805
                   T      FP K A   S E ++  +     DV+ FG ++ E+ + G++    
Sbjct: 151 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 207
Query: 806 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
            S      D   G    +  + S+         V  +   C +  P DRP+    L+ L+
Sbjct: 208 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWKERPEDRPAFSRLLRQLA 259
Query: 866 GLKPHG 871
            +   G
Sbjct: 260 EIAESG 265

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 47/276 (17%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 89  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 717
              Y++ +Y   GNL E ++ +R    +Y                       VARG+ +L
Sbjct: 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 207
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W  
Sbjct: 208 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 261
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 262 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 315
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
           S+  +E+ +++     C  + PS RP+ ++ ++ L 
Sbjct: 316 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLD 348

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K I  GA   +   E    +  + H  L++L G C  +    L+++++ +G LS+ +
Sbjct: 32  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 91
Query: 695 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
           RT+R   A   ++   L V  G+ +L   C   + H DL A N +  EN    +++FG  
Sbjct: 92  RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 148
Query: 752 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 805
                   T      FP K A   S E ++  +     DV+ FG ++ E+ + G++    
Sbjct: 149 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 205
Query: 806 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
            S      D   G    +  + S+         V  +   C +  P DRP+    L+ L+
Sbjct: 206 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWKERPEDRPAFSRLLRQLA 257
Query: 866 GLKPHG 871
            +   G
Sbjct: 258 EIAESG 263

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 23/246 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K I  GA   +   E    +  + H  L++L G C  +    L+ +++ +G LS+ +
Sbjct: 35  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYL 94
Query: 695 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
           RT+R   A   ++   L V  G+ +L   C   + H DL A N +  EN    +++FG  
Sbjct: 95  RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 151
Query: 752 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 805
                   T      FP K A   S E ++  +     DV+ FG ++ E+ + G++    
Sbjct: 152 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 208
Query: 806 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
            S      D   G    +  + S+         V  +   C R  P DRP+    L+ L+
Sbjct: 209 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWRERPEDRPAFSRLLRQLA 260
Query: 866 GLKPHG 871
            +   G
Sbjct: 261 EIAESG 266

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 48  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 106
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 717
              Y++ +Y   GNL E ++ +R    +Y                       VARG+ +L
Sbjct: 107 GPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 166
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W  
Sbjct: 167 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 220
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 221 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 274
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           S+  +E+ +++     C  + PS RP+ ++ ++ L  +
Sbjct: 275 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 309

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 40  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 98
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 717
              Y++ +Y   GNL E ++ +R    +Y                       VARG+ +L
Sbjct: 99  GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 158
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W  
Sbjct: 159 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 212
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 213 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 266
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           S+  +E+ +++     C  + PS RP+ ++ ++ L  +
Sbjct: 267 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 301

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 33  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 91
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 717
              Y++ +Y   GNL E ++ +R    +Y                       VARG+ +L
Sbjct: 92  GPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 151
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W  
Sbjct: 152 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 205
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 206 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 259
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           S+  +E+ +++     C  + PS RP+ ++ ++ L  +
Sbjct: 260 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 294

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 48  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 106
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 717
              Y++ +Y   GNL E ++ +R    +Y                       VARG+ +L
Sbjct: 107 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 166
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W  
Sbjct: 167 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 220
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 221 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 274
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           S+  +E+ +++     C  + PS RP+ ++ ++ L  +
Sbjct: 275 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 309

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 41  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 99
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 717
              Y++ +Y   GNL E ++ +R    +Y                       VARG+ +L
Sbjct: 100 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 159
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W  
Sbjct: 160 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 213
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 214 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 267
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           S+  +E+ +++     C  + PS RP+ ++ ++ L  +
Sbjct: 268 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 302

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 47/278 (16%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 37  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 95
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 717
              Y++ +Y   GNL E ++ +R    +Y                       VARG+ +L
Sbjct: 96  GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 155
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W  
Sbjct: 156 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 209
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 210 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 263
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           S+  +E+ +++     C  + PS RP+ ++ ++ L  +
Sbjct: 264 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 298

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 67  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R    +Y   +                   +ARG+ +L    C     H 
Sbjct: 126 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG            +  +G  P K  W      ++ +    
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K I+ G+       E    +  + H  L++L G C  +    L+++++ +G LS+ +
Sbjct: 54  VAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 113
Query: 695 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
           RT+R   A   ++   L V  G+ +L   C   + H DL A N +  EN    +++FG  
Sbjct: 114 RTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMT 170
Query: 752 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 805
                   T      FP K A   S E ++  +     DV+ FG ++ E+ + G++    
Sbjct: 171 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 227
Query: 806 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
            S      D   G    +  + S+         V  +   C +  P DRP+    L+ L+
Sbjct: 228 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWKERPEDRPAFSRLLRQLA 279
Query: 866 GLKPHG 871
            +   G
Sbjct: 280 EIAESG 285

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 23/246 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K I  GA   +   E    +  + H  L++L G C  +    L+++++ +G LS+ +
Sbjct: 34  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYL 93
Query: 695 RTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
           RT+R   A   ++   L V  G+ +L      ++ H DL A N +  EN    +++FG  
Sbjct: 94  RTQRGLFAAETLLGMCLDVCEGMAYLEE---ASVIHRDLAARNCLVGENQVIKVSDFGMT 150
Query: 752 YL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 805
                   T      FP K A   S E ++  +     DV+ FG ++ E+ + G++    
Sbjct: 151 RFVLDDQYTSSTGTKFPVKWA---SPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN 207
Query: 806 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
            S      D   G    +  + S+         V  +   C +  P DRP+    L+ L+
Sbjct: 208 RSNSEVVEDISTGFRLYKPRLASTH--------VYQIMNHCWKERPEDRPAFSRLLRQLA 259
Query: 866 GLKPHG 871
            +   G
Sbjct: 260 AIAASG 265

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYDYLPN 687
            +TV+VK ++  AT  K +S+ ++ +  ++    HKN+I LLG C      Y++ +Y   
Sbjct: 67  AVTVAVKMLKDDATE-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125
Query: 688 GNLSEKIRTKRD--WAAKYKI----------------VLGVARGLCFL-HHDCYPAIPHG 728
           GNL E +R +R       Y I                   +ARG+ +L    C     H 
Sbjct: 126 GNLREYLRARRPPGMEXSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI----HR 181
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N++  EN    +A+FG            +  +G  P K  W      ++ +    
Sbjct: 182 DLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVK--WMAPEALFDRVYTHQ 239
Query: 782 YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD 841
             DV+ FG ++ EI T G     GS     P++ L   +   + +   ++  +E+ +++ 
Sbjct: 240 S-DVWSFGVLMWEIFTLG-----GSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMR 293
Query: 842 VALLCTRSTPSDRPSMEEALKLLSGL 867
               C  + PS RP+ ++ ++ L  +
Sbjct: 294 D---CWHAVPSQRPTFKQLVEDLDRI 316

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 47/278 (16%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 48  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 106
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFL 717
              Y++ +Y   GNL E ++ +     +Y                       VARG+ +L
Sbjct: 107 GPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 166
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG         Y  +  +G  P K  W  
Sbjct: 167 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMA 220
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 221 PEALFDRIYTHQ-SDVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 274
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           S+  +E+ +++     C  + PS RP+ ++ ++ L  +
Sbjct: 275 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 309

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 118/278 (42%), Gaps = 47/278 (16%)
Query: 621 SAAGCKAVLPTGIT-VSVKKIEWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNR 675
            A G     P  +T V+VK ++  AT  K +S+ I+ +  ++    HKN+I LLG C   
Sbjct: 48  EAIGLDKDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQD 106
Query: 676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI------------------VLGVARGLCFL 717
              Y++ +Y   GNL E ++ +R    ++                       VARG+ +L
Sbjct: 107 GPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDLVSCAYQVARGMEYL 166
Query: 718 -HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTE 769
               C     H DL A N++  E+    +A+FG            +  +G  P K  W  
Sbjct: 167 ASKKCI----HRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPVK--WMA 220
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS 829
               ++ +      DV+ FG ++ EI T G     GS     P++ L   +   + +   
Sbjct: 221 PEALFDRIYTHQS-DVWSFGVLLWEIFTLG-----GSPYPGVPVEELFKLLKEGHRMDKP 274
Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           S+  +E+ +++     C  + PS RP+ ++ ++ L  +
Sbjct: 275 SNCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 309

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 36/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G   ++   E    + T++H  L+RL          Y++ +Y+  G+L + +
Sbjct: 40  VAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFL 99
Query: 695 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           ++            D++A+      +A G+ ++    Y    H DL+A+N++  E++   
Sbjct: 100 KSDEGGKVLLPKLIDFSAQ------IAEGMAYIERKNY---IHRDLRAANVLVSESLMCK 150
Query: 745 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +A+FG   + +  D  + A+      I WT + E  N     +  DV+ FG ++ EI+T 
Sbjct: 151 IADFGLARVIE--DNEYTAREGAKFPIKWT-APEAINFGCFTIKSDVWSFGILLYEIVTY 207
Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           G++   G +  N  +   L + Y    V    +  DE+    D+  +C +    +RP+ +
Sbjct: 208 GKIPYPGRT--NADVMTALSQGYRMPRV---ENCPDEL---YDIMKMCWKEKAEERPTFD 259

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 22/237 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +Y+P GNL +
Sbjct: 58  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLD 117
Query: 693 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
            +R          ++L +A  +   + +       H DL A N +  EN    +A+FG  
Sbjct: 118 YLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLS 177
Query: 752 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
            L      T  A   FP  I WT      YN     +  DV+ FG ++ EI T G     
Sbjct: 178 RLMTGDTYTAHAGAKFP--IKWTAPESLAYNTFS--IKSDVWAFGVLLWEIATYGMSPYP 233
Query: 805 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEA 860
           G  L    +  LL + Y  E   G           V ++   C + +P+DRPS  E 
Sbjct: 234 GIDLSQ--VYDLLEKGYRMEQPEGCPPK-------VYELMRACWKWSPADRPSFAET 281

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 40  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 99  KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 155
Query: 751 KYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L + A+        FP  I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 156 ARLIEDAEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 212
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 213 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 258

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 39  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 98
Query: 693 KIR--TKRDWAAKYKIVLG--VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R   +++ +A   + +   ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 99  YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 155
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 156 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 211
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 212 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 39  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 98
Query: 693 KIR--TKRDWAAKYKIVLG--VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R   +++ +A   + +   ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 99  YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 155
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 156 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 211
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 212 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 46  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 104
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 105 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 161
Query: 751 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L +  D  + A+      I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 162 ARLIE--DNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 218
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 219 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 264

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 50  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 108
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 109 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 165
Query: 751 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L +  D  + A+      I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 166 ARLIE--DNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 222
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 223 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 268

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 40  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 99  KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 155
Query: 751 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L +  D  + A+      I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 156 ARLIE--DNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 212
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 213 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 258

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 45  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 103
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 104 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 160
Query: 751 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L +  D  + A+      I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 161 ARLIE--DNEYTAREGAKFPIKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 217
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 218 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 263

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 39  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 98
Query: 693 KIR--TKRDWAAKYKIVLG--VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R   +++ +A   + +   ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 99  YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 155
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 156 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 211
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 212 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 39  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 98
Query: 693 KIR--TKRDWAAKYKIVLG--VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R   +++ +A   + +   ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 99  YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 155
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 156 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 211
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 212 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 44  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 103
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 104 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 160
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 161 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 216
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 217 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 40  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 99
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 100 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 156
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 157 GLSRLMTGDTXTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 212
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 213 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 262

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 44  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 103
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 104 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 160
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 161 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 216
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 217 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 39  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 98
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 99  YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 155
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 156 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 211
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 212 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 43  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 102
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 103 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 159
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 160 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 215
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 216 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 265

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 39  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 98
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 99  YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 155
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 156 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 211
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 212 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 261

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 44  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 103
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 104 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 160
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 161 GLSRLMTGDTXTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 216
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 217 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 41  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 100
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 101 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 157
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 158 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 213
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 214 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 263

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 41  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 100
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 101 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 157
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 158 GLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 213
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 214 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 263

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 40  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 99
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 100 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 156
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 157 GLSRLMTGDTYTAPAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 212
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 213 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 262

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 41  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 100
Query: 693 KIRTKRDWAAKYKIVL----GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R          ++L     ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 101 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 157
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 158 GLSRLMTGDTYTAPAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 213
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 214 PYPGIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 263

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 49  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 107
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 108 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 164
Query: 751 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L      T      FP  I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 165 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 221
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 222 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 267

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 40  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 99  KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 155
Query: 751 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L      T      FP  I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 156 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 212
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 213 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 258

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 40  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 98
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 99  KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 155
Query: 751 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L      T      FP  I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 156 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 212
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 213 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 258

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 48  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 106
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 107 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 163
Query: 751 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L      T      FP  I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 164 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 220
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 221 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 266

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 46  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 104
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 105 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 161
Query: 751 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L      T      FP  I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 162 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 218
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 219 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 264

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 41  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 99
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 100 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 156
Query: 751 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L      T      FP  I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 157 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 213
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 214 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 259

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+            +  ++H+ L+RL      +   Y++ +Y+ NG+L + +
Sbjct: 42  VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFL 100
Query: 695 RTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +T          +L     +A G+ F+    Y    H DL+A+NI+  + +   +A+FG 
Sbjct: 101 KTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI---HRDLRAANILVSDTLSCKIADFGL 157
Query: 751 KYL------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             L      T      FP  I WT + E  N     +  DV+ FG ++ EI+T+GR+   
Sbjct: 158 ARLIEDNEXTAREGAKFP--IKWT-APEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP 214
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           G +    P      E+    E G      D   + +  +  LC +  P DRP+ +
Sbjct: 215 GMT---NP------EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD 260

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 29/211 (13%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLC 715
           ++H+ L+RL      +   Y++ +Y+ NG+L + ++T    K        +   +A G+ 
Sbjct: 60  LQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMA 118
Query: 716 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK------IAWTE 769
           F+    Y    H DL+A+NI+  + +   +A+FG   L +  D  + A+      I WT 
Sbjct: 119 FIEERNYI---HRDLRAANILVSDTLSCKIADFGLARLIE--DNEYTAREGAKFPIKWT- 172
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-EMYNENEVGS 828
           + E  N     +  DV+ FG ++ EI+T+GR+          P  G+   E+    E G 
Sbjct: 173 APEAINYGTFTIKSDVWSFGILLTEIVTHGRI----------PYPGMTNPEVIQNLERGY 222
Query: 829 SSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
                D   + +  +  LC +  P DRP+ +
Sbjct: 223 RMVRPDNCPEELYQLMRLCWKERPEDRPTFD 253

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 28/239 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 37  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLD 96
Query: 693 KIR--TKRDWAAKYKIVLG--VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
            +R   +++ +A   + +   ++  + +L    +    H DL A N +  EN    +A+F
Sbjct: 97  YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF---IHRDLAARNCLVGENHLVKVADF 153
Query: 749 GFKYL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G   L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G  
Sbjct: 154 GLSRLMTGDTXTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMS 209
Query: 802 TNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
              G  +    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 210 PYPG--IDPSQVYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 259

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 44  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 103
Query: 693 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
            +R          ++L +A  +   + +       H DL A N +  EN    +A+FG  
Sbjct: 104 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 163
Query: 752 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
            L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G     
Sbjct: 164 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 219
Query: 805 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 220 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 44  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 103
Query: 693 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
            +R          ++L +A  +   + +       H DL A N +  EN    +A+FG  
Sbjct: 104 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 163
Query: 752 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
            L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G     
Sbjct: 164 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 219
Query: 805 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 220 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 266

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 29/211 (13%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLC 715
           ++H+ L+RL      +   Y++ +Y+ NG+L + ++T    K        +   +A G+ 
Sbjct: 61  LQHQRLVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMA 119
Query: 716 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK------IAWTE 769
           F+    Y    H +L+A+NI+  + +   +A+FG   L +  D  + A+      I WT 
Sbjct: 120 FIEERNYI---HRNLRAANILVSDTLSCKIADFGLARLIE--DNEYTAREGAKFPIKWT- 173
Query: 770 SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-EMYNENEVGS 828
           + E  N     +  DV+ FG ++ EI+T+GR+          P  G+   E+    E G 
Sbjct: 174 APEAINYGTFTIKSDVWSFGILLTEIVTHGRI----------PYPGMTNPEVIQNLERGY 223
Query: 829 SSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
                D   + +  +  LC +  P DRP+ +
Sbjct: 224 RMVRPDNCPEELYQLMRLCWKERPEDRPTFD 254

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 110/240 (45%), Gaps = 36/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G   ++   E    + T++H  L+RL          Y++ +++  G+L + +
Sbjct: 39  VAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFL 98
Query: 695 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           ++            D++A+      +A G+ ++    Y    H DL+A+N++  E++   
Sbjct: 99  KSDEGGKVLLPKLIDFSAQ------IAEGMAYIERKNY---IHRDLRAANVLVSESLMCK 149
Query: 745 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +A+FG   + +  D  + A+      I WT + E  N     +  +V+ FG ++ EI+T 
Sbjct: 150 IADFGLARVIE--DNEYTAREGAKFPIKWT-APEAINFGCFTIKSNVWSFGILLYEIVTY 206
Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           G++   G +  N  +   L + Y    +    +  DE+    D+  +C +    +RP+ +
Sbjct: 207 GKIPYPGRT--NADVMSALSQGY---RMPRMENCPDEL---YDIMKMCWKEKAEERPTFD 258

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 52  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 111
Query: 693 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
            +R          ++L +A  +   + +       H DL A N +  EN    +A+FG  
Sbjct: 112 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 171
Query: 752 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
            L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G     
Sbjct: 172 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 227
Query: 805 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 228 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 274

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 285 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 344
Query: 693 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
            +R          ++L +A  +   + +       H +L A N +  EN    +A+FG  
Sbjct: 345 YLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLS 404
Query: 752 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
            L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G     
Sbjct: 405 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 460
Query: 805 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 461 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 507

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 37  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 96
Query: 693 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
            +R          ++L +A  +   + +       H DL A N +  EN    +A+FG  
Sbjct: 97  YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 156
Query: 752 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
            L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G     
Sbjct: 157 RLMTGDTXTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 212
Query: 805 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           G  +    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 213 G--IDPSQVYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 259

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 246 LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 305
Query: 693 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
            +R          ++L +A  +   + +       H +L A N +  EN    +A+FG  
Sbjct: 306 YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLS 365
Query: 752 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
            L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G     
Sbjct: 366 RLMTGDTYTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 421
Query: 805 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           G  L    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 422 GIDLSQ--VYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 468

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSE 692
           +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ +++  GNL +
Sbjct: 37  LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLD 96
Query: 693 KIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK 751
            +R          ++L +A  +   + +       H DL A N +  EN    +A+FG  
Sbjct: 97  YLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 156
Query: 752 YL------TQLADGSFPAKIAWTESGEF-YNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
            L      T  A   FP  I WT      YN  K  +  DV+ FG ++ EI T G     
Sbjct: 157 RLMTGDTFTAHAGAKFP--IKWTAPESLAYN--KFSIKSDVWAFGVLLWEIATYGMSPYP 212
Query: 805 GSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           G  +    +  LL + Y  E   G           V ++   C +  PSDRPS  E
Sbjct: 213 G--IDPSQVYELLEKDYRMERPEGCPEK-------VYELMRACWQWNPSDRPSFAE 259

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 294 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 352
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 353 KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 406
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L  + D  + A+      I WT      Y      +  DV+ FG ++ E+ T GR
Sbjct: 407 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 462
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 463 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 512

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 633 ITVSVKKIE--WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
           I V +K IE   G    + V++ +  IG++ H +++RLLG C       L+  YLP G+L
Sbjct: 61  IPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGS-SLQLVTQYLPLGSL 119
Query: 691 SEKIRTKR---------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM 741
            + +R  R         +W  +      +A+G+ +L       + H +L A N++     
Sbjct: 120 LDHVRQHRGALGPQLLLNWGVQ------IAKGMYYLEEH---GMVHRNLAARNVLLKSPS 170
Query: 742 EPHLAEFGFKYL-----TQLADGSFPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILE 794
           +  +A+FG   L      QL        I W   ES  F     +    DV+ +G  + E
Sbjct: 171 QVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQS---DVWSYGVTVWE 227
Query: 795 ILTNGRLTNAGSSLQNKP 812
           ++T G    AG  L   P
Sbjct: 228 LMTFGAEPYAGLRLAEVP 245

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 93/237 (39%), Gaps = 48/237 (20%)
Query: 652 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG-- 709
           E + ++G   H N+I LLG C +R   YL  +Y P+GNL + +R  R         +   
Sbjct: 67  EVLCKLG--HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS 124
Query: 710 ----------------VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 750
                           VARG+ +L         H DL A NI+  EN    +A+FG    
Sbjct: 125 TASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRG 181
Query: 751 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 809
            +   +   G  P +    ES    N        DV+ +G ++ EI+          SL 
Sbjct: 182 QEVYVKKTMGRLPVRWMAIES---LNYSVYTTNSDVWSYGVLLWEIV----------SLG 228
Query: 810 NKPIDGL-LGEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 861
             P  G+   E+Y +   G       +  DE   V D+   C R  P +RPS  + L
Sbjct: 229 GTPYCGMTCAELYEKLPQGYRLEKPLNCDDE---VYDLMRQCWREKPYERPSFAQIL 282

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 109/234 (46%), Gaps = 25/234 (10%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+  ++        + T++H  L++L      +   Y++ +++  G+L + +
Sbjct: 42  VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFL 100
Query: 695 RT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           ++    K+           +A G+ F+    Y    H DL+A+NI+   ++   +A+FG 
Sbjct: 101 KSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYI---HRDLRAANILVSASLVCKIADFGL 157
Query: 751 KYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
             + +  D  + A+      I WT + E  N     +  DV+ FG +++EI+T GR+   
Sbjct: 158 ARVIE--DNEYTAREGAKFPIKWT-APEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP 214
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           G S  N  +   L   Y    +    +  +E+    ++ + C ++ P +RP+ E
Sbjct: 215 GMS--NPEVIRALERGY---RMPRPENCPEEL---YNIMMRCWKNRPEERPTFE 260

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 93/237 (39%), Gaps = 48/237 (20%)
Query: 652 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG-- 709
           E + ++G   H N+I LLG C +R   YL  +Y P+GNL + +R  R         +   
Sbjct: 77  EVLCKLG--HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS 134
Query: 710 ----------------VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 750
                           VARG+ +L         H DL A NI+  EN    +A+FG    
Sbjct: 135 TASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRG 191
Query: 751 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 809
            +   +   G  P +    ES    N        DV+ +G ++ EI+          SL 
Sbjct: 192 QEVYVKKTMGRLPVRWMAIES---LNYSVYTTNSDVWSYGVLLWEIV----------SLG 238
Query: 810 NKPIDGL-LGEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 861
             P  G+   E+Y +   G       +  DE   V D+   C R  P +RPS  + L
Sbjct: 239 GTPYCGMTCAELYEKLPQGYRLEKPLNCDDE---VYDLMRQCWREKPYERPSFAQIL 292

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 633 ITVSVKKIE--WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
           I V +K IE   G    + V++ +  IG++ H +++RLLG C       L+  YLP G+L
Sbjct: 43  IPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGS-SLQLVTQYLPLGSL 101
Query: 691 SEKIRTKR---------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM 741
            + +R  R         +W  +      +A+G+ +L       + H +L A N++     
Sbjct: 102 LDHVRQHRGALGPQLLLNWGVQ------IAKGMYYLEEH---GMVHRNLAARNVLLKSPS 152
Query: 742 EPHLAEFGFKYL-----TQLADGSFPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILE 794
           +  +A+FG   L      QL        I W   ES  F     +    DV+ +G  + E
Sbjct: 153 QVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQS---DVWSYGVTVWE 209
Query: 795 ILTNGRLTNAGSSLQNKP 812
           ++T G    AG  L   P
Sbjct: 210 LMTFGAEPYAGLRLAEVP 227

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 27/272 (9%)
Query: 607 SFNSTECEEAA-RPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL 665
            +   E EE   R      CKA       V++K+IE  + R   + E + ++  V H N+
Sbjct: 7   DYKEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESERKAFIVE-LRQLSRVNHPNI 64
Query: 666 IRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRD---WAAKYKI--VLGVARGLCFLHHD 720
           ++L G C N     L+ +Y   G+L   +        + A + +   L  ++G+ +LH  
Sbjct: 65  VKLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSM 122
Query: 721 CYPAIPHGDLKASNIVFDENMEP-HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE 779
              A+ H DLK  N++         + +FG     Q    +     AW  + E +     
Sbjct: 123 QPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWM-APEVFEGSNY 181
Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE----MYNENEVGSSSSLQDE 835
               DV+ +G I+ E++T           + KP D + G     M+  +       +++ 
Sbjct: 182 SEKCDVFSWGIILWEVIT-----------RRKPFDEIGGPAFRIMWAVHNGTRPPLIKNL 230
Query: 836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
            K +  +   C    PS RPSMEE +K+++ L
Sbjct: 231 PKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 262

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 57/259 (22%)
Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFC--------------- 672
           T + V+VK ++   +  + + EF++    ++   H N+IRLLG C               
Sbjct: 61  TSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVIL 120
Query: 673 ----YNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHG 728
               Y     YLLY  L  G     ++T        K ++ +A G+ +L +  +    H 
Sbjct: 121 PFMKYGDLHTYLLYSRLETGPKHIPLQT------LLKFMVDIALGMEYLSNRNF---LHR 171
Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
           DL A N +  ++M   +A+FG         Y  Q      P K    ES      + + +
Sbjct: 172 DLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIES------LADRV 225
Query: 782 YM---DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS-SSLQDEIK 837
           Y    DV+ FG  + EI T G     G  +QN        EMY+    G      +D + 
Sbjct: 226 YTSKSDVWAFGVTMWEIATRGMTPYPG--VQNH-------EMYDYLLHGHRLKQPEDCLD 276
Query: 838 LVLDVALLCTRSTPSDRPS 856
            + ++   C R+ P DRP+
Sbjct: 277 ELYEIMYSCWRTDPLDRPT 295

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKY-------KIVLGVAR 712
           +RH+ L++L     +    Y++ +Y+  G+L + ++ +     KY        +   +A 
Sbjct: 236 LRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGE---TGKYLRLPQLVDMAAQIAS 291
Query: 713 GLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK------IA 766
           G+ ++    Y    H DL+A+NI+  EN+   +A+FG   L  + D  + A+      I 
Sbjct: 292 GMAYVERMNYV---HRDLRAANILVGENLVCKVADFGLARL--IEDNEYTARQGAKFPIK 346
Query: 767 WTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-EMYNEN 824
           WT      Y      +  DV+ FG ++ E+ T GR+          P  G++  E+ ++ 
Sbjct: 347 WTAPEAALYGRFT--IKSDVWSFGILLTELTTKGRV----------PYPGMVNREVLDQV 394
Query: 825 EVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           E G       E    L D+   C R  P +RP+ E
Sbjct: 395 ERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 27/272 (9%)
Query: 607 SFNSTECEEAA-RPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL 665
            +   E EE   R      CKA       V++K+IE  + R   + E + ++  V H N+
Sbjct: 6   DYKEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESERKAFIVE-LRQLSRVNHPNI 63
Query: 666 IRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRD---WAAKYKI--VLGVARGLCFLHHD 720
           ++L G C N     L+ +Y   G+L   +        + A + +   L  ++G+ +LH  
Sbjct: 64  VKLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSM 121
Query: 721 CYPAIPHGDLKASNIVFDENMEP-HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKE 779
              A+ H DLK  N++         + +FG     Q    +     AW  + E +     
Sbjct: 122 QPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWM-APEVFEGSNY 180
Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE----MYNENEVGSSSSLQDE 835
               DV+ +G I+ E++T           + KP D + G     M+  +       +++ 
Sbjct: 181 SEKCDVFSWGIILWEVIT-----------RRKPFDEIGGPAFRIMWAVHNGTRPPLIKNL 229
Query: 836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
            K +  +   C    PS RPSMEE +K+++ L
Sbjct: 230 PKPIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKY-------KIVLGVAR 712
           +RH+ L++L     +    Y++ +Y+  G+L + ++ +     KY        +   +A 
Sbjct: 236 LRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGE---TGKYLRLPQLVDMAAQIAS 291
Query: 713 GLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK------IA 766
           G+ ++    Y    H DL+A+NI+  EN+   +A+FG   L  + D  + A+      I 
Sbjct: 292 GMAYVERMNYV---HRDLRAANILVGENLVCKVADFGLARL--IEDNEYTARQGAKFPIK 346
Query: 767 WTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-EMYNEN 824
           WT      Y      +  DV+ FG ++ E+ T GR+          P  G++  E+ ++ 
Sbjct: 347 WTAPEAALYGRFT--IKSDVWSFGILLTELTTKGRV----------PYPGMVNREVLDQV 394
Query: 825 EVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           E G       E    L D+   C R  P +RP+ E
Sbjct: 395 ERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 36/262 (13%)
Query: 631 TGITVSVKK-IEWGATRI--KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           TG  V++KK +E    ++  KI    I  +  +RH+NL+ LL  C  + + YL+++++ +
Sbjct: 49  TGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDH 108
Query: 688 GNLS--EKIRTKRDWAAKYKIVLGVARGLCFLH-HDCYPAIPHGDLKASNIVFDENMEPH 744
             L   E      D+    K +  +  G+ F H H+    I H D+K  NI+  ++    
Sbjct: 109 TILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHN----IIHRDIKPENILVSQSGVVK 164
Query: 745 LAEFGFKYLTQLADGSFPAKIA--WTESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRL 801
           L +FGF          +  ++A  W  + E     +K    +DV+  G ++ E+     L
Sbjct: 165 LCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPL 224
Query: 802 TNAGSSL-QNKPIDGLLG-------EMYNENEVGSSSSLQDEIK--------------LV 839
               S + Q   I   LG       E++N+N V +   L  EIK              +V
Sbjct: 225 FPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLP-EIKEREPLERRYPKLSEVV 283
Query: 840 LDVALLCTRSTPSDRPSMEEAL 861
           +D+A  C    P  RP   E L
Sbjct: 284 IDLAKKCLHIDPDKRPFCAELL 305

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 103
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 213
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 108/252 (42%), Gaps = 64/252 (25%)
Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
           L  LN S N  +   P+   NLT+L  LDIS N  S                        
Sbjct: 153 LQQLNFSSNQVTDLKPLA--NLTTLERLDISSNKVSDI---------------------- 188
Query: 80  GSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKT 139
            SV A+++ LE L   N   +  S   P   G   +L+ L L GN L D     +G L +
Sbjct: 189 -SVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLAS 237
Query: 140 VTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA 199
           +T++                       LD+A   +S   P  LS LTKL  L L  NQ++
Sbjct: 238 LTNLT---------------------DLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS 259
              P   + +T L +L+L++N+L    P   ++LKNL  L+L +N +S   P S   L  
Sbjct: 275 NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTK 328
Query: 260 LEILFIWNNYFS 271
           L+ LF +NN  S
Sbjct: 329 LQRLFFYNNKVS 340

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 211 VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVGEYMSKGSLLDFL 269
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 270 KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 323
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L  + D  + A+      I WT      Y      +  DV+ FG ++ E+ T GR
Sbjct: 324 FGLARL--IEDNEYTARQGAKFPIKWTAPEAALYGRFT--IKSDVWSFGILLTELTTKGR 379
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 380 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKY-------KIVLGVAR 712
           +RH+ L++L     +    Y++ +Y+  G+L + ++ +     KY        +   +A 
Sbjct: 237 LRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGE---MGKYLRLPQLVDMAAQIAS 292
Query: 713 GLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK------IA 766
           G+ ++    Y    H DL+A+NI+  EN+   +A+FG   L  + D  + A+      I 
Sbjct: 293 GMAYVERMNYV---HRDLRAANILVGENLVCKVADFGLGRL--IEDNEYTARQGAKFPIK 347
Query: 767 WTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG-EMYNEN 824
           WT      Y      +  DV+ FG ++ E+ T GR+          P  G++  E+ ++ 
Sbjct: 348 WTAPEAALYGRFT--IKSDVWSFGILLTELTTKGRV----------PYPGMVNREVLDQV 395
Query: 825 EVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           E G       E    L D+   C R  P +RP+ E
Sbjct: 396 ERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 430

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 38  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 96
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 97  KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 150
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 151 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 206
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 207 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 256

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 112/240 (46%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+  ++        + T++H  L++L      +   Y++ +++  G+L + +
Sbjct: 215 VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFL 273
Query: 695 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           ++            D++A+      +A G+ F+    Y    H DL+A+NI+   ++   
Sbjct: 274 KSDEGSKQPLPKLIDFSAQ------IAEGMAFIEQRNYI---HRDLRAANILVSASLVCK 324
Query: 745 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +A+FG   +  + D  + A+      I WT + E  N     +  DV+ FG +++EI+T 
Sbjct: 325 IADFGLARV--IEDNEYTAREGAKFPIKWT-APEAINFGSFTIKSDVWSFGILLMEIVTY 381
Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           GR+   G S  N  +   L   Y    +    +  +E+    ++ + C ++ P +RP+ E
Sbjct: 382 GRIPYPGMS--NPEVIRALERGYR---MPRPENCPEEL---YNIMMRCWKNRPEERPTFE 433

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 67/142 (47%)
Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L  +T + + YN  Q        +++E+  L +A   L+        +LT+L+ L+L  N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           QL       F R+T LK L L+ N+L      +F  L NL+ LSL  N++      +  +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 257 LPSLEILFIWNNYFSGSLPENL 278
           L  L+ + ++ N F  S  E L
Sbjct: 178 LGKLQTITLFGNQFDCSRCETL 199

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVIEYMSKGSLLDFL 103
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 213
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 34  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 92
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 93  KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 146
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 147 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 202
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 203 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 252

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 36  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 94
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 95  KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 148
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 149 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 204
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 205 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 254

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 103
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 213
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 93/237 (39%), Gaps = 48/237 (20%)
Query: 652 EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG-- 709
           E + ++G   H N+I LLG C +R   YL  +Y P+GNL + +R  R         +   
Sbjct: 74  EVLCKLG--HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANS 131
Query: 710 ----------------VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--- 750
                           VARG+ +L         H +L A NI+  EN    +A+FG    
Sbjct: 132 TASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRNLAARNILVGENYVAKIADFGLSRG 188
Query: 751 -KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ 809
            +   +   G  P +    ES    N        DV+ +G ++ EI+          SL 
Sbjct: 189 QEVYVKKTMGRLPVRWMAIES---LNYSVYTTNSDVWSYGVLLWEIV----------SLG 235
Query: 810 NKPIDGL-LGEMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 861
             P  G+   E+Y +   G       +  DE   V D+   C R  P +RPS  + L
Sbjct: 236 GTPYCGMTCAELYEKLPQGYRLEKPLNCDDE---VYDLMRQCWREKPYERPSFAQIL 289

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 109/234 (46%), Gaps = 35/234 (14%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V+VK ++ G+  ++        + T++H  L++L      +   Y++ +++  G+L + +
Sbjct: 209 VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV-TKEPIYIITEFMAKGSLLDFL 267
Query: 695 RTKR----------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           ++            D++A+      +A G+ F+    Y    H DL+A+NI+   ++   
Sbjct: 268 KSDEGSKQPLPKLIDFSAQ------IAEGMAFIEQRNYI---HRDLRAANILVSASLVCK 318
Query: 745 LAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
           +A+FG   +       FP  I WT + E  N     +  DV+ FG +++EI+T GR+   
Sbjct: 319 IADFGLARVG----AKFP--IKWT-APEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP 371
Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           G S  N  +   L   Y    +    +  +E+    ++ + C ++ P +RP+ E
Sbjct: 372 GMS--NPEVIRALERGYR---MPRPENCPEEL---YNIMMRCWKNRPEERPTFE 417

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVCEYMSKGSLLDFL 103
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 213
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVIEYMSKGSLLDFL 103
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 748 FGFKYL------TQLADGSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L      T      FP  I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIEDNEXTARQGAKFP--IKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 213
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 62  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 120
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 121 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 174
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 175 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 233
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 234 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 284
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 285 FEQIVSILDKL 295

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           + V++K ++ G T  + V +F+     +G   H N+IRL G         ++ +Y+ NG 
Sbjct: 74  VPVAIKTLKAGYTEKQRV-DFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGA 132
Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L + +R K    +  ++V    G+A G+ +L +  Y    H DL A NI+ + N+   ++
Sbjct: 133 LDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY---VHRDLAARNILVNSNLVCKVS 189
Query: 747 EFGFKYLTQ--------LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +FG   + +         + G  P  I WT + E  +  K     DV+ FG ++ E++T 
Sbjct: 190 DFGLSRVLEDDPEATYTTSGGKIP--IRWT-APEAISYRKFTSASDVWSFGIVMWEVMTY 246
Query: 799 G 799
           G
Sbjct: 247 G 247

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLGRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLARVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 42  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMNKGSLLDFL 100
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 101 KGE---TGKYLRLPQLVDMSAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 154
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 155 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 210
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 211 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 260

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 45  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 103
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 104 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 157
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 158 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 216
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 217 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 267
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 268 FEQIVSILDKL 278

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 33/255 (12%)
Query: 636 SVKKIEWGATRIKI------------VSEFITRIGTV---RHKNLIRLLGFCYNRHQAYL 680
           +V + EW  + + +            V+EF+  +  +   RH N++  +G         +
Sbjct: 52  TVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI 111
Query: 681 LYDYLPNGNLSEKI-----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
           + +YL  G+L   +     R + D   +  +   VA+G+ +LH+   P I H +LK+ N+
Sbjct: 112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNL 170
Query: 736 VFDENMEPHLAEFGFKYL---TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEII 792
           + D+     + +FG   L   T L+  S      W       +    E   DVY FG I+
Sbjct: 171 LVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKS-DVYSFGVIL 229
Query: 793 LEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPS 852
            E+ T   L     +L    +   +G      E+    +L  ++  +++    C  + P 
Sbjct: 230 WELAT---LQQPWGNLNPAQVVAAVGFKCKRLEI--PRNLNPQVAAIIEG---CWTNEPW 281
Query: 853 DRPSMEEALKLLSGL 867
            RPS    + LL  L
Sbjct: 282 KRPSFATIMDLLRPL 296

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G L + +
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVMEYMSKGCLLDFL 103
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 213
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 72  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 130
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 131 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 184
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 185 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 243
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 244 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 294
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 295 FEQIVSILDKL 305

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGSLLDFL 103
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL A+NI+  EN+   +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLAAANILVGENLVCKVAD 157
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 213
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G+L + +
Sbjct: 42  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMNKGSLLDFL 100
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 101 KGE---TGKYLRLPQLVDMSAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 154
Query: 748 FGFKYL------TQLADGSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L      T      FP  I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 155 FGLARLIEDNEWTARQGAKFP--IKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 210
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 211 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 260

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 107/255 (41%), Gaps = 48/255 (18%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGT---VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V+VK I+ G+       EF     T   + H  L++  G C   +  Y++ +Y+ NG L 
Sbjct: 35  VAVKMIKEGSMS---EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLL 91
Query: 692 EKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
             +R+     + +   ++   V  G+ FL    +    H DL A N + D ++   +++F
Sbjct: 92  NYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF---IHRDLAARNCLVDRDLCVKVSDF 148
Query: 749 GF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 801
           G        +Y++ +    FP K  W+ + E ++  K     DV+ FG ++ E+ + G++
Sbjct: 149 GMTRYVLDDQYVSSVGT-KFPVK--WS-APEVFHYFKYSSKSDVWAFGILMWEVFSLGKM 204
Query: 802 TNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-------KLVLDVALLCTRSTPSDR 854
                     P D     +Y  +EV    S    +         +  +   C    P  R
Sbjct: 205 ----------PYD-----LYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKR 249
Query: 855 PSMEEALKLLSGLKP 869
           P+ ++   LLS ++P
Sbjct: 250 PTFQQ---LLSSIEP 261

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 129 QIPAELGMLKTVTHME-IGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTK 187
           + P E   L TV      G       IP  +  +    YLD    N    +PKELSN   
Sbjct: 3   RCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTEL----YLD---GNQFTLVPKELSNYKH 55
Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 247
           L  + L  N+++      FS +T L +L LS NRL    P +F  LK+LRLLSL  N++S
Sbjct: 56  LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 248 GTVPE 252
             VPE
Sbjct: 116 -VVPE 119

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 4/182 (2%)
Query: 71  LDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQI 130
           LD  SN  S        +L  L++L L  +         F   K+LE L +  N L    
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 131 PAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLE 189
                 L  +  + +  N  +   P    +++++ YL + G N   S+PK +   LT L+
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL-GYNELQSLPKGVFDKLTSLK 160
Query: 190 SLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEMSG 248
            L L+ NQL       F ++T LK+L L +N+L   +PE +F  L+ L++L L  N    
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC 219
Query: 249 TV 250
           T 
Sbjct: 220 TC 221

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +    Y++ +Y+  G L + +
Sbjct: 45  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMSKGCLLDFL 103
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 104 KGE---MGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 157
Query: 748 FGFKYLTQLADGSFPAK------IAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L +  D  + A+      I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 158 FGLARLIE--DNEYTARQGAKFPIKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 213
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 214 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 86/207 (41%), Gaps = 25/207 (12%)
Query: 63  QSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-GSYFSGPIPSQFGSFKSLEFLHL 121
           QS RNL +L   SN+ +G   A  + L  L+ L+L+  +      P+ F     L  LHL
Sbjct: 52  QSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHL 111
Query: 122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 181
                        G+       E+G   ++G        ++ +QYL +   NL       
Sbjct: 112 D----------RCGL------QELGPGLFRG--------LAALQYLYLQDNNLQALPDNT 147
Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
             +L  L  LFL  N++       F  + +L  L L  N ++   P +F DL  L  L L
Sbjct: 148 FRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYL 207
Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNN 268
             N +S    E LV L SL+ L + +N
Sbjct: 208 FANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 31/250 (12%)
Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           + V++K ++ G T   R   +SE  + +G   H N+IRL G       A ++ +Y+ NG+
Sbjct: 78  VPVAIKALKAGYTERQRRDFLSE-ASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGS 136
Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   +RT        ++V    GV  G+ +L    Y    H DL A N++ D N+   ++
Sbjct: 137 LDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY---VHRDLAARNVLVDSNLVCKVS 193
Query: 747 EFGF-KYLTQLADGSFPAK-----IAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +FG  + L    D ++        I WT  E+  F          DV+ FG ++ E+L  
Sbjct: 194 DFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSAS---DVWSFGVVMWEVLAY 250
Query: 799 GRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM 857
           G       ++ N+ +   + E Y     +G   +L    +L+LD    C     + RP  
Sbjct: 251 GE--RPYWNMTNRDVISSVEEGYRLPAPMGCPHALH---QLMLD----CWHKDRAQRPRF 301
Query: 858 EEALKLLSGL 867
            + + +L  L
Sbjct: 302 SQIVSVLDAL 311

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 108/252 (42%), Gaps = 64/252 (25%)
Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
           L  L+ S N  +   P+   NLT+L  LDIS N  S                        
Sbjct: 153 LQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSDI---------------------- 188
Query: 80  GSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKT 139
            SV A+++ LE L   N   +  S   P   G   +L+ L L GN L D     +G L +
Sbjct: 189 -SVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLAS 237
Query: 140 VTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA 199
           +T++                       LD+A   +S   P  LS LTKL  L L  NQ++
Sbjct: 238 LTNLT---------------------DLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS 259
              P   + +T L +L+L++N+L    P   ++LKNL  L+L +N +S   P S   L  
Sbjct: 275 NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTK 328
Query: 260 LEILFIWNNYFS 271
           L+ LF +NN  S
Sbjct: 329 LQRLFFYNNKVS 340

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ +Y+ NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L         H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSD---MGFVHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 109/260 (41%), Gaps = 64/260 (24%)
Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
           NLT+L  LDIS N  S                         SV A+++ LE L   N   
Sbjct: 175 NLTTLERLDISSNKVSDI-----------------------SVLAKLTNLESLIATN--- 208
Query: 100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG 159
           +  S   P   G   +L+ L L GN L D     +G L ++T++                
Sbjct: 209 NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASLTNLT--------------- 246
Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
                  LD+A   +S   P  LS LTKL  L L  NQ++   P   + +T L +L+L++
Sbjct: 247 ------DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296
Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG 279
           N+L    P   ++LKNL  L+L +N +S   P S   L  L+ LF +NN  S     +L 
Sbjct: 297 NQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDV--SSLA 350
Query: 280 RNSKLRWVDVSTNNFNGSIP 299
             + + W+    N  +   P
Sbjct: 351 NLTNINWLSAGHNQISDLTP 370

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 101/255 (39%), Gaps = 33/255 (12%)
Query: 636 SVKKIEWGATRIKI------------VSEFITRIGTV---RHKNLIRLLGFCYNRHQAYL 680
           +V + EW  + + +            V+EF+  +  +   RH N++  +G         +
Sbjct: 52  TVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI 111
Query: 681 LYDYLPNGNLSEKI-----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
           + +YL  G+L   +     R + D   +  +   VA+G+ +LH+   P I H DLK+ N+
Sbjct: 112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRDLKSPNL 170
Query: 736 VFDENMEPHLAEFGFKYLTQ---LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEII 792
           + D+     + +FG   L     L          W       +    E   DVY FG I+
Sbjct: 171 LVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSNEKS-DVYSFGVIL 229
Query: 793 LEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPS 852
            E+ T   L     +L    +   +G      E+    +L  ++  +++    C  + P 
Sbjct: 230 WELAT---LQQPWGNLNPAQVVAAVGFKCKRLEI--PRNLNPQVAAIIEG---CWTNEPW 281
Query: 853 DRPSMEEALKLLSGL 867
            RPS    + LL  L
Sbjct: 282 KRPSFATIMDLLRPL 296

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L  +T + + YN  Q        +++E+  L +A   L+        +LT+L+ L+L  N
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           QL       F R+T LK L L+ N+L      +F  L NL+ LSL  N++      +  +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 257 LPSLEILFIWNNYFSGSLPENLG-----RNSKLRWVDVSTNNFNGSIPPDICSGGVLFKL 311
           L  L+ + ++ N F  S  E L      R +  +  D +  N + S     CS G + + 
Sbjct: 178 LGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVRT 237
Query: 312 I 312
           +
Sbjct: 238 V 238

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 100/232 (43%), Gaps = 62/232 (26%)
Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
           NLT+L  LDIS N  S                         SV A+++ LE L   N   
Sbjct: 170 NLTTLERLDISSNKVSDI-----------------------SVLAKLTNLESLIATN--- 203
Query: 100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG 159
           +  S   P   G   +L+ L L GN L D     +G L ++T++                
Sbjct: 204 NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASLTNLT--------------- 241
Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
                  LD+A   +S   P  LS LTKL  L L  NQ++   P   + +T L +L+L++
Sbjct: 242 ------DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 291
Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 271
           N+L    P   ++LKNL  L+L +N +S   P S   L  L+ LF +NN  S
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVS 339

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           + V++K ++ G T   R   +SE  + +G   H N+IRL G       A ++ +Y+ NG+
Sbjct: 78  VPVAIKALKAGYTERQRRDFLSE-ASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGS 136
Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   +RT        ++V    GV  G+ +L    Y    H DL A N++ D N+   ++
Sbjct: 137 LDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY---VHRDLAARNVLVDSNLVCKVS 193
Query: 747 EFGFKYLTQ--------LADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +FG   + +           G  P +    E+  F          DV+ FG ++ E+L  
Sbjct: 194 DFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFSSAS---DVWSFGVVMWEVLAY 250
Query: 799 GRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM 857
           G       ++ N+ +   + E Y     +G   +L    +L+LD    C     + RP  
Sbjct: 251 GE--RPYWNMTNRDVISSVEEGYRLPAPMGCPHALH---QLMLD----CWHKDRAQRPRF 301
Query: 858 EEALKLLSGL 867
            + + +L  L
Sbjct: 302 SQIVSVLDAL 311

>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 633 ITVSVKKI-EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY--LLYDYLPNGN 689
           I V V K+ +W   + +  +E   R+    H N++ +LG C +    +  L+  ++P G+
Sbjct: 36  IVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGS 95
Query: 690 L----SEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           L     E      D +   K  L +ARG+ FLH    P IP   L + +++ DE+M   +
Sbjct: 96  LYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIPRHALNSRSVMIDEDMTARI 154
Query: 746 A----EFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +    +F F+   ++   ++ A  A  +  E  N        D++ F  ++ E++T 
Sbjct: 155 SMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTN----RRSADMWSFAVLLWELVTR 207

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 37/240 (15%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   +    +  +RH+ L++L     +     ++ +Y+  G+L + +
Sbjct: 35  VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIXIVTEYMSKGSLLDFL 93
Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
           + +     KY        +   +A G+ ++    Y    H DL+A+NI+  EN+   +A+
Sbjct: 94  KGE---TGKYLRLPQLVDMAAQIASGMAYVERMNYV---HRDLRAANILVGENLVCKVAD 147
Query: 748 FGFKYL------TQLADGSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           FG   L      T      FP  I WT      Y   +  +  DV+ FG ++ E+ T GR
Sbjct: 148 FGLARLIEDNEXTARQGAKFP--IKWTAPEAALYG--RFTIKSDVWSFGILLTELTTKGR 203
Query: 801 LTNAGSSLQNKPIDGLLG-EMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
           +          P  G++  E+ ++ E G       E    L D+   C R  P +RP+ E
Sbjct: 204 V----------PYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 253

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 56  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 687 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK+                     VA+G+ FL    C     H
Sbjct: 116 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 171
Query: 728 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
            DL A NI+  E     + +FG     +K    +  G     + W      ++ +   + 
Sbjct: 172 RDLAARNILLSEKNVVKICDFGLARDIYKDPDXVRKGDARLPLKWMAPETIFDRVY-TIQ 230
Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI + G     G  +          E     + G+     D     +  
Sbjct: 231 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 282
Query: 843 ALL-CTRSTPSDRPSMEEALKLLSGL 867
            +L C    PS RP+  E ++ L  L
Sbjct: 283 TMLDCWHGEPSQRPTFSELVEHLGNL 308

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 93  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 152
Query: 687 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK+                     VA+G+ FL    C     H
Sbjct: 153 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 208
Query: 728 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
            DL A NI+  E     + +FG     +K    +  G     + W      ++ +   + 
Sbjct: 209 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 267
Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI + G     G  +          E     + G+     D     +  
Sbjct: 268 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 319
Query: 843 ALL-CTRSTPSDRPSMEEALKLLSGL 867
            +L C    PS RP+  E ++ L  L
Sbjct: 320 TMLDCWHGEPSQRPTFSELVEHLGNL 345

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 27/231 (11%)
Query: 43  SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYF 102
           S+ SL++  + FS       Q    L  LD  +    G +P+ +  L  LK L L+ ++F
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 103 SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMS 162
                    +F SL  L++ GN               V  + +G    +     +LGN+ 
Sbjct: 311 DQLCQISAANFPSLTHLYIRGN---------------VKKLHLGVGCLE-----KLGNL- 349
Query: 163 EVQYLDIAGANLSGS--IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDN 220
             Q LD++  ++  S     +L NL+ L++L L  N+  G     F     L+ LDL+  
Sbjct: 350 --QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 221 RLSGPIPES-FADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
           RL    P+S F +L  L++L+L Y  +  +    L  LP L  L +  N+F
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ + + NG+
Sbjct: 45  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGS 103
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 104 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 157
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 158 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 216
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 217 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 267
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 268 FEQIVSILDKL 278

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 62/232 (26%)
Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
           NLT+L  LDIS N  S                         SV A+++ LE L   N   
Sbjct: 174 NLTTLERLDISSNKVSDI-----------------------SVLAKLTNLESLIATN--- 207
Query: 100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG 159
           +  S   P   G   +L+ L L GN L D     +G L ++T++                
Sbjct: 208 NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASLTNLT--------------- 245
Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
                  LD+A   +S   P  LS LTKL  L L  NQ++   P   + +T L +L+L++
Sbjct: 246 ------DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 295
Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 271
           N+L    P   ++LKNL  L+L +N +S   P S   L  L+ LF  NN  S
Sbjct: 296 NQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVS 343

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 32/186 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 690
           G  V+VK I+  AT    ++E  + +  +RH NL++LLG         Y++ +Y+  G+L
Sbjct: 44  GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 102
Query: 691 SEKIRTKRDWAAKYKIVLGVARGLCFLHH--DCYPAIP--------HGDLKASNIVFDEN 740
            + +R++       + VLG   G C L    D   A+         H DL A N++  E+
Sbjct: 103 VDYLRSRG------RSVLG---GDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 153
Query: 741 MEPHLAEFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEI 795
               +++FG  K  +   D G  P K  WT       A++E+ +    DV+ FG ++ EI
Sbjct: 154 NVAKVSDFGLTKEASSTQDTGKLPVK--WTAP----EALREKKFSTKSDVWSFGILLWEI 207
Query: 796 LTNGRL 801
            + GR+
Sbjct: 208 YSFGRV 213

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 107/252 (42%), Gaps = 64/252 (25%)
Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
           L  L+ S N  +   P+   NLT+L  LDIS N  S                        
Sbjct: 153 LQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSDI---------------------- 188
Query: 80  GSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKT 139
            SV A+++ LE L   N   +  S   P   G   +L+ L L GN L D     +G L +
Sbjct: 189 -SVLAKLTNLESLIATN---NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLAS 237
Query: 140 VTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA 199
           +T++                       LD+A   +S   P  LS LTKL  L L  NQ++
Sbjct: 238 LTNLT---------------------DLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS 259
              P   + +T L +L+L++N+L    P   ++LKNL  L+L +N +S   P S   L  
Sbjct: 275 NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTK 328
Query: 260 LEILFIWNNYFS 271
           L+ LF  NN  S
Sbjct: 329 LQRLFFSNNKVS 340

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 56  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 687 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK+                     VA+G+ FL    C     H
Sbjct: 116 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 171
Query: 728 GDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEE 780
            DL A NI+  E     + +FG            +  D   P K  W      ++ +   
Sbjct: 172 RDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-T 228
Query: 781 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL 840
           +  DV+ FG ++ EI + G     G  +          E     + G+     D     +
Sbjct: 229 IQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEM 280
Query: 841 DVALL-CTRSTPSDRPSMEEALKLLSGL 867
              +L C    PS RP+  E ++ L  L
Sbjct: 281 YQTMLDCWHGEPSQRPTFSELVEHLGNL 308

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 56  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 687 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK+                     VA+G+ FL    C     H
Sbjct: 116 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 171
Query: 728 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
            DL A NI+  E     + +FG     +K    +  G     + W      ++ +   + 
Sbjct: 172 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 230
Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI + G     G  +          E     + G+     D     +  
Sbjct: 231 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 282
Query: 843 ALL-CTRSTPSDRPSMEEALKLLSGL 867
            +L C    PS RP+  E ++ L  L
Sbjct: 283 TMLDCWHGEPSQRPTFSELVEHLGNL 308

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 39/230 (16%)
Query: 658 GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR-------DWAAKYKIVLGV 710
             ++H N+I L G C       L+ ++   G L+  +  KR       +WA +      +
Sbjct: 61  AMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQ------I 114
Query: 711 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP--------HLAEFGF-KYLTQLADGSF 761
           ARG+ +LH +    I H DLK+SNI+  + +E          + +FG  +   +    S 
Sbjct: 115 ARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSA 174
Query: 762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGL---LG 818
               AW  + E   A       DV+ +G ++ E+LT G +   G       IDGL    G
Sbjct: 175 AGAYAWM-APEVIRASMFSKGSDVWSYGVLLWELLT-GEVPFRG-------IDGLAVAYG 225
Query: 819 EMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
              N+  +   S+  +   KL+ D    C    P  RPS    L  L+ +
Sbjct: 226 VAMNKLALPIPSTCPEPFAKLMED----CWNPDPHSRPSFTNILDQLTTI 271

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 32/186 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 690
           G  V+VK I+  AT    ++E  + +  +RH NL++LLG         Y++ +Y+  G+L
Sbjct: 29  GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 87
Query: 691 SEKIRTKRDWAAKYKIVLGVARGLCFLHH--DCYPAIP--------HGDLKASNIVFDEN 740
            + +R++       + VLG   G C L    D   A+         H DL A N++  E+
Sbjct: 88  VDYLRSRG------RSVLG---GDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 138
Query: 741 MEPHLAEFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEI 795
               +++FG  K  +   D G  P K  WT       A++E+ +    DV+ FG ++ EI
Sbjct: 139 NVAKVSDFGLTKEASSTQDTGKLPVK--WTAP----EALREKKFSTKSDVWSFGILLWEI 192
Query: 796 LTNGRL 801
            + GR+
Sbjct: 193 YSFGRV 198

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 32/186 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 690
           G  V+VK I+  AT    ++E  + +  +RH NL++LLG         Y++ +Y+  G+L
Sbjct: 35  GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 93
Query: 691 SEKIRTKRDWAAKYKIVLGVARGLCFLHH--DCYPAIP--------HGDLKASNIVFDEN 740
            + +R++       + VLG   G C L    D   A+         H DL A N++  E+
Sbjct: 94  VDYLRSRG------RSVLG---GDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 144
Query: 741 MEPHLAEFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEI 795
               +++FG  K  +   D G  P K  WT       A++E  +    DV+ FG ++ EI
Sbjct: 145 NVAKVSDFGLTKEASSTQDTGKLPVK--WTAP----EALREAAFSTKSDVWSFGILLWEI 198
Query: 796 LTNGRL 801
            + GR+
Sbjct: 199 YSFGRV 204

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ + + NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L    Y    H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSDMGY---VHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 62/232 (26%)
Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
           NLT+L  LDIS N  S                         SV A+++ LE L   N   
Sbjct: 170 NLTTLERLDISSNKVSDI-----------------------SVLAKLTNLESLIATN--- 203
Query: 100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG 159
           +  S   P   G   +L+ L L GN L D     +G L ++T++                
Sbjct: 204 NQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASLTNLT--------------- 241
Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
                  LD+A   +S   P  LS LTKL  L L  NQ++   P   + +T L +L+L++
Sbjct: 242 ------DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 291
Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 271
           N+L    P   ++LKNL  L+L +N +S   P S   L  L+ LF  NN  S
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVS 339

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 47  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 106
Query: 687 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK+                     VA+G+ FL    C     H
Sbjct: 107 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 162
Query: 728 GDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEE 780
            DL A NI+  E     + +FG            +  D   P K  W      ++ +   
Sbjct: 163 RDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-T 219
Query: 781 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL 840
           +  DV+ FG ++ EI + G     G  +          E     + G+     D     +
Sbjct: 220 IQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEM 271
Query: 841 DVALL-CTRSTPSDRPSMEEALKLLSGL 867
              +L C    PS RP+  E ++ L  L
Sbjct: 272 YQTMLDCWHGEPSQRPTFSELVEHLGNL 299

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 47  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCK 106
Query: 687 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK+                     VA+G+ FL    C     H
Sbjct: 107 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 162
Query: 728 GDLKASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEE 780
            DL A NI+  E     + +FG            +  D   P K  W      ++ +   
Sbjct: 163 RDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-T 219
Query: 781 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL 840
           +  DV+ FG ++ EI + G     G  +          E     + G+     D     +
Sbjct: 220 IQSDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEM 271
Query: 841 DVALL-CTRSTPSDRPSMEEALKLLSGL 867
              +L C    PS RP+  E ++ L  L
Sbjct: 272 YQTMLDCWHGEPSQRPTFSELVEHLGNL 299

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 47  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCK 106
Query: 687 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK+                     VA+G+ FL    C     H
Sbjct: 107 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 162
Query: 728 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
            DL A NI+  E     + +FG     +K    +  G     + W      ++ +   + 
Sbjct: 163 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 221
Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI + G     G  +          E     + G+     D     +  
Sbjct: 222 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 273
Query: 843 ALL-CTRSTPSDRPSMEEALKLLSGL 867
            +L C    PS RP+  E ++ L  L
Sbjct: 274 TMLDCWHGEPSQRPTFSELVEHLGNL 299

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 42/266 (15%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 47  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCK 106
Query: 687 NGNLSEKIRTKRDWAAKYKIV------------------LGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK+                     VA+G+ FL    C     H
Sbjct: 107 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 162
Query: 728 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
            DL A NI+  E     + +FG     +K    +  G     + W      ++ +   + 
Sbjct: 163 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 221
Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI + G     G  +          E     + G+     D     +  
Sbjct: 222 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 273
Query: 843 ALL-CTRSTPSDRPSMEEALKLLSGL 867
            +L C    PS RP+  E ++ L  L
Sbjct: 274 TMLDCWHGEPSQRPTFSELVEHLGNL 299

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 36/261 (13%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 56  TXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 687 NGNLSEKIRTKRDWAAKYKIV--------------LGVARGLCFLHHDCYPAIPHGDLKA 732
            GNLS  +R+KR+    YK +                VA+G+ FL         H DL A
Sbjct: 116 FGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLIXYSFQVAKGMEFL---ASRKXIHRDLAA 172
Query: 733 SNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYG 787
            NI+  E     + +FG     +K    +  G     + W      ++ +   +  DV+ 
Sbjct: 173 RNILLSEKNVVKIXDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQSDVWS 231
Query: 788 FGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL-C 846
           FG ++ EI + G     G  +          E     + G+     D     +   +L C
Sbjct: 232 FGVLLWEIFSLGASPYPGVKIDE--------EFXRRLKEGTRMRAPDYTTPEMYQTMLDC 283
Query: 847 TRSTPSDRPSMEEALKLLSGL 867
               PS RP+  E ++ L  L
Sbjct: 284 WHGEPSQRPTFSELVEHLGNL 304

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 36/261 (13%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 56  TXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 115
Query: 687 NGNLSEKIRTKRDWAAKYKIV--------------LGVARGLCFLHHDCYPAIPHGDLKA 732
            GNLS  +R+KR+    YK +                VA+G+ FL         H DL A
Sbjct: 116 FGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKXIHRDLAA 172
Query: 733 SNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYG 787
            NI+  E     + +FG     +K    +  G     + W      ++ +   +  DV+ 
Sbjct: 173 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQSDVWS 231
Query: 788 FGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL-C 846
           FG ++ EI + G     G  +          E     + G+     D     +   +L C
Sbjct: 232 FGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQTMLDC 283
Query: 847 TRSTPSDRPSMEEALKLLSGL 867
               PS RP+  E ++ L  L
Sbjct: 284 WHGEPSQRPTFSELVEHLGNL 304

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 34/164 (20%)
Query: 660 VRHKNLIRLLGFCY-------NRHQAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVA 711
           +RH+N+   LGF         +  Q YL+ DY  NG+L + ++ T  D  +  K+     
Sbjct: 88  MRHENI---LGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSV 144
Query: 712 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGF--KYLTQLADGSFPAK 764
            GLC LH + +     PAI H DLK+ NI+  +N    +A+ G   K+++   +   P  
Sbjct: 145 SGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPN 204
Query: 765 IAWTESG-EFY------------NAMKEEMYMDVYGFGEIILEI 795
              T  G + Y            N  +  +  D+Y FG I+ E+
Sbjct: 205 ---TRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEV 245

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 100/263 (38%), Gaps = 37/263 (14%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 57  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 116
Query: 687 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHH-DCYP-------------AIPHGDLKA 732
            GNLS  +R+KR+    YK    + +    L H  CY                 H DL A
Sbjct: 117 FGNLSTYLRSKRNEFVPYKTPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA 176
Query: 733 SNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDV 785
            NI+  E     + +FG            +  D   P K  W      ++ +   +  DV
Sbjct: 177 RNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-TIQSDV 233
Query: 786 YGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL 845
           + FG ++ EI + G     G  +          E     + G+     D     +   +L
Sbjct: 234 WSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQTML 285
Query: 846 -CTRSTPSDRPSMEEALKLLSGL 867
            C    PS RP+  E ++ L  L
Sbjct: 286 DCWHGEPSQRPTFSELVEHLGNL 308

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 32/186 (17%)
Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYDYLPNGNL 690
           G  V+VK I+  AT    ++E  + +  +RH NL++LLG         Y++ +Y+  G+L
Sbjct: 216 GNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL 274
Query: 691 SEKIRTKRDWAAKYKIVLGVARGLCFLHH--DCYPAIP--------HGDLKASNIVFDEN 740
            + +R++       + VLG   G C L    D   A+         H DL A N++  E+
Sbjct: 275 VDYLRSRG------RSVLG---GDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSED 325
Query: 741 MEPHLAEFGF-KYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEI 795
               +++FG  K  +   D G  P K  WT       A++E+ +    DV+ FG ++ EI
Sbjct: 326 NVAKVSDFGLTKEASSTQDTGKLPVK--WTAP----EALREKKFSTKSDVWSFGILLWEI 379
Query: 796 LTNGRL 801
            + GR+
Sbjct: 380 YSFGRV 385

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 129 TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 188
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 749
                ++   L VA+G+ FL         H DL A N + DE     +A+FG        
Sbjct: 189 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245
Query: 750 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            F  +        P K    ES       K     DV+ FG ++ E++T G
Sbjct: 246 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 293

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 38  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 97
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 98  GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 154
Query: 745 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           + +FG   +       F  K      I W  + E     K  +  DV+ FG ++ E+ T
Sbjct: 155 IGDFGLTKVLPQDKEFFKVKEPGESPIFWY-APESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 660 VRHKNLIRLLGFC----YNRH---QAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVA 711
           +RH+N+   LGF      +RH   Q +L+  Y   G+L + ++ T  D  +  +IVL +A
Sbjct: 88  LRHENI---LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIA 144
Query: 712 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGFKYL-----TQLADGS- 760
            GL  LH + +     PAI H DLK+ NI+  +N +  +A+ G   +      QL  G+ 
Sbjct: 145 SGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNN 204
Query: 761 ---------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK 811
                     P  +  T   + +++ K    +D++ FG ++ E+    R+ + G     K
Sbjct: 205 PRVGTKRYMAPEVLDETIQVDCFDSYKR---VDIWAFGLVLWEVAR--RMVSNGIVEDYK 259
Query: 812 P 812
           P
Sbjct: 260 P 260

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 71  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 130
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 749
                ++   L VA+G+ FL         H DL A N + DE     +A+FG        
Sbjct: 131 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDK 187
Query: 750 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            F  +        P K    ES       K     DV+ FG ++ E++T G
Sbjct: 188 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 235

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 75  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 134
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 749
                ++   L VA+G+ FL         H DL A N + DE     +A+FG        
Sbjct: 135 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 191
Query: 750 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            F  +        P K    ES       K     DV+ FG ++ E++T G
Sbjct: 192 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 239

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 33/251 (13%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I+V++K ++ G T  K   +F+     +G   H N+IRL G         ++ + + NG+
Sbjct: 74  ISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGS 132
Query: 690 LSEKIRTKRDWAAKYKIV------LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           L   +R K D  A++ ++       G+A G+ +L         H DL A NI+ + N+  
Sbjct: 133 LDSFLR-KHD--AQFTVIQLVGMLRGIASGMKYLSD---MGAVHRDLAARNILINSNLVC 186
Query: 744 HLAEFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
            +++FG  + L    + ++  +     I WT S E     K     DV+ +G ++ E+++
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGIVLWEVMS 245
Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
            G        + N+ +   + E Y     +   ++L    +L+LD    C +   ++RP 
Sbjct: 246 YGE--RPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL---YQLMLD----CWQKDRNNRPK 296
Query: 857 MEEALKLLSGL 867
            E+ + +L  L
Sbjct: 297 FEQIVSILDKL 307

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 70  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 129
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 749
                ++   L VA+G+ FL         H DL A N + DE     +A+FG        
Sbjct: 130 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186
Query: 750 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            F  +        P K    ES       K     DV+ FG ++ E++T G
Sbjct: 187 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 234

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 71  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 130
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 749
                ++   L VA+G+ FL         H DL A N + DE     +A+FG        
Sbjct: 131 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 187
Query: 750 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            F  +        P K    ES       K     DV+ FG ++ E++T G
Sbjct: 188 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 235

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 70  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 129
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 749
                ++   L VA+G+ FL         H DL A N + DE     +A+FG        
Sbjct: 130 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186
Query: 750 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            F  +        P K    ES       K     DV+ FG ++ E++T G
Sbjct: 187 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 234

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 22/171 (12%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 68  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 127
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG-------- 749
                ++   L VA+G+ FL         H DL A N + DE     +A+FG        
Sbjct: 128 PTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 184
Query: 750 -FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            F  +        P K    ES       K     DV+ FG ++ E++T G
Sbjct: 185 EFDSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 232

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 631 TGITVSVK--KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYLP 686
           TG  V+VK  K E G   I  + + I  +  + H+N+++  G C     +   L+ ++LP
Sbjct: 49  TGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLP 108
Query: 687 NGNLSE---KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           +G+L E   K + K +   + K  + + +G+ +L    Y    H DL A N++ +   + 
Sbjct: 109 SGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQY---VHRDLAARNVLVESEHQV 165
Query: 744 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA----MKEEMYM--DVYGFGEIILEILT 797
            + +FG     +        K    +S  F+ A    M+ + Y+  DV+ FG  + E+LT
Sbjct: 166 KIGDFGLTKAIETDKEXXTVKDD-RDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 224

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 635 VSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V++K ++ G T  +   EF++    +G   H N+IRL G   N     +L +++ NG L 
Sbjct: 47  VAIKTLKGGYTE-RQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALD 105
Query: 692 EKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
             +R         ++V    G+A G+ +L    Y    H DL A NI+ + N+   +++F
Sbjct: 106 SFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSY---VHRDLAARNILVNSNLVCKVSDF 162
Query: 749 GFKYL----------TQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           G              T    G  P  I WT + E     K     D + +G ++ E+++ 
Sbjct: 163 GLSRFLEENSSDPTETSSLGGKIP--IRWT-APEAIAFRKFTSASDAWSYGIVMWEVMSF 219
Query: 799 G 799
           G
Sbjct: 220 G 220

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 631 TGITVSVK--KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYLP 686
           TG  V+VK  K E G   I  + + I  +  + H+N+++  G C     +   L+ ++LP
Sbjct: 37  TGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLP 96
Query: 687 NGNLSE---KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           +G+L E   K + K +   + K  + + +G+ +L    Y    H DL A N++ +   + 
Sbjct: 97  SGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQY---VHRDLAARNVLVESEHQV 153
Query: 744 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA----MKEEMYM--DVYGFGEIILEILT 797
            + +FG     +        K    +S  F+ A    M+ + Y+  DV+ FG  + E+LT
Sbjct: 154 KIGDFGLTKAIETDKEXXTVKDD-RDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 212

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 42/266 (15%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 58  TCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 117
Query: 687 NGNLSEKIRTKRDWAAKYK------------------IVLGVARGLCFL-HHDCYPAIPH 727
            GNLS  +R+KR+    YK                      VA+G+ FL    C     H
Sbjct: 118 FGNLSTYLRSKRNEFVPYKEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCI----H 173
Query: 728 GDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY 782
            DL A NI+  E     + +FG     +K    +  G     + W      ++ +   + 
Sbjct: 174 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY-TIQ 232
Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI + G     G  +          E     + G+     D     +  
Sbjct: 233 SDVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQ 284
Query: 843 ALL-CTRSTPSDRPSMEEALKLLSGL 867
            +L C    PS RP+  E ++ L  L
Sbjct: 285 TMLDCWHGEPSQRPTFSELVEHLGNL 310

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 101/265 (38%), Gaps = 42/265 (15%)
Query: 631 TGITVSVKKIEWGATRIK---IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL-LYDYLP 686
           T  TV+VK ++ GAT  +   ++SE    I    H N++ LLG C       + + ++  
Sbjct: 58  TXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 117
Query: 687 NGNLSEKIRTKRDWAAKYK----------------IVLGVARGLCFLHHDCYPAIPHGDL 730
            GNLS  +R+KR+    YK                    VA+G+ FL         H DL
Sbjct: 118 FGNLSTYLRSKRNEFVPYKPEDLYKDFLTLEHLIXYSFQVAKGMEFL---ASRKXIHRDL 174
Query: 731 KASNIVFDENMEPHLAEFGFKY-------LTQLADGSFPAKIAWTESGEFYNAMKEEMYM 783
            A NI+  E     + +FG            +  D   P K  W      ++ +   +  
Sbjct: 175 AARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLK--WMAPETIFDRVY-TIQS 231
Query: 784 DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA 843
           DV+ FG ++ EI + G     G  +          E     + G+     D     +   
Sbjct: 232 DVWSFGVLLWEIFSLGASPYPGVKIDE--------EFCRRLKEGTRMRAPDYTTPEMYQT 283
Query: 844 LL-CTRSTPSDRPSMEEALKLLSGL 867
           +L C    PS RP+  E ++ L  L
Sbjct: 284 MLDCWHGEPSQRPTFSELVEHLGNL 308

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLG-----FCYNRHQAYLLYDYLPNGN 689
           V+VK   +   +  I  + I R+  + H N+ R +          R +  L+ +Y PNG+
Sbjct: 39  VAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGS 98
Query: 690 LSEKIRTKR-DWAAKYKIVLGVARGLCFLHH-----DCY-PAIPHGDLKASNIVFDENME 742
           L + +     DW +  ++   V RGL +LH      D Y PAI H DL + N++   +  
Sbjct: 99  LXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGT 158
Query: 743 PHLAEFGF 750
             +++FG 
Sbjct: 159 CVISDFGL 166

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 660 VRHKNLIRLLGFC----YNRH---QAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVA 711
           +RH+N+   LGF      +RH   Q +L+  Y   G+L + ++ T  D  +  +IVL +A
Sbjct: 59  LRHENI---LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIA 115
Query: 712 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGFKYL-----TQLADGS- 760
            GL  LH + +     PAI H DLK+ NI+  +N +  +A+ G   +      QL  G+ 
Sbjct: 116 SGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNN 175
Query: 761 ---------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK 811
                     P  +  T   + +++ K    +D++ FG ++ E+    R+ + G     K
Sbjct: 176 PRVGTKRYMAPEVLDETIQVDCFDSYKR---VDIWAFGLVLWEVAR--RMVSNGIVEDYK 230
Query: 812 P 812
           P
Sbjct: 231 P 231

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 660 VRHKNLIRLLGFC----YNRH---QAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVA 711
           +RH+N+   LGF      +RH   Q +L+  Y   G+L + ++ T  D  +  +IVL +A
Sbjct: 59  LRHENI---LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIA 115
Query: 712 RGLCFLHHDCY-----PAIPHGDLKASNIVFDENMEPHLAEFGFKYL-----TQLADGS- 760
            GL  LH + +     PAI H DLK+ NI+  +N +  +A+ G   +      QL  G+ 
Sbjct: 116 SGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNN 175
Query: 761 ---------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK 811
                     P  +  T   + +++ K    +D++ FG ++ E+    R+ + G     K
Sbjct: 176 PRVGTKRYMAPEVLDETIQVDCFDSYKR---VDIWAFGLVLWEVAR--RMVSNGIVEDYK 230
Query: 812 P 812
           P
Sbjct: 231 P 231

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 53  NFSGHFPGG-IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-GSYFSGPIPSQF 110
           N   H P    ++ RNL +L   SN  +    A  + L  L+ L+L+  +      P+ F
Sbjct: 42  NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 111 GSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIA 170
                L  LHL             G+       E+G   ++G        ++ +QYL + 
Sbjct: 102 HGLGRLHTLHLD----------RCGL------QELGPGLFRG--------LAALQYLYLQ 137
Query: 171 GANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESF 230
              L         +L  L  LFL  N+++      F  + +L  L L  NR++   P +F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 231 ADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 268
            DL  L  L L  N +S    E+L  L +L+ L + +N
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 38  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 97
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 98  GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 154
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 155 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 211
Query: 797 T 797
           T
Sbjct: 212 T 212

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 69  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 128
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 129 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 185
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 186 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 242
Query: 797 T 797
           T
Sbjct: 243 T 243

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 635 VSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V++K ++ G T  +   EF++    +G   H N+IRL G   N     +L +++ NG L 
Sbjct: 45  VAIKTLKGGYTE-RQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALD 103
Query: 692 EKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
             +R         ++V    G+A G+ +L    Y    H DL A NI+ + N+   +++F
Sbjct: 104 SFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSY---VHRDLAARNILVNSNLVCKVSDF 160
Query: 749 GF-KYLTQ-LADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           G  ++L +  +D ++ +       I WT + E     K     D + +G ++ E+++ G
Sbjct: 161 GLSRFLEENSSDPTYTSSLGGKIPIRWT-APEAIAFRKFTSASDAWSYGIVMWEVMSFG 218

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 29/236 (12%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V++K ++ G    +   E    +  ++H  L++L     +    Y++ +Y+  G+L + +
Sbjct: 36  VAIKTLKPGTMSPESFLEEAQIMKKLKHDKLVQLYAVV-SEEPIYIVTEYMNKGSLLDFL 94
Query: 695 RTKRDWAAK----YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           +     A K      +   VA G+ ++    Y    H DL+++NI+    +   +A+FG 
Sbjct: 95  KDGEGRALKLPNLVDMAAQVAAGMAYIERMNYI---HRDLRSANILVGNGLICKIADFGL 151
Query: 751 KYL------TQLADGSFPAKIAWTE-SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTN 803
             L      T      FP  I WT      Y      +  DV+ FG ++ E++T GR+  
Sbjct: 152 ARLIEDNEXTARQGAKFP--IKWTAPEAALYGRFT--IKSDVWSFGILLTELVTKGRVPY 207
Query: 804 AGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL-DVALLCTRSTPSDRPSME 858
            G  + N+       E+  + E G       +  + L ++ + C +  P +RP+ E
Sbjct: 208 PG--MNNR-------EVLEQVERGYRMPCPQDCPISLHELMIHCWKKDPEERPTFE 254

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 53  NFSGHFPGG-IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-GSYFSGPIPSQF 110
           N   H P    ++ RNL +L   SN  +    A  + L  L+ L+L+  +      P+ F
Sbjct: 41  NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 111 GSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIA 170
                L  LHL             G+       E+G   ++G        ++ +QYL + 
Sbjct: 101 HGLGRLHTLHLD----------RCGL------QELGPGLFRG--------LAALQYLYLQ 136
Query: 171 GANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESF 230
              L         +L  L  LFL  N+++      F  + +L  L L  NR++   P +F
Sbjct: 137 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
Query: 231 ADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 268
            DL  L  L L  N +S    E+L  L +L+ L + +N
Sbjct: 197 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 45  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 104
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 105 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 161
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 162 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 218
Query: 797 T 797
           T
Sbjct: 219 T 219

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 42  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 101
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 102 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 158
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 159 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 215
Query: 797 T 797
           T
Sbjct: 216 T 216

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 56  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 115
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 116 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 172
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 173 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 229
Query: 797 T 797
           T
Sbjct: 230 T 230

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 41  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 100
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 101 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 157
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 158 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 214
Query: 797 T 797
           T
Sbjct: 215 T 215

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 56  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 115
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 116 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 172
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 173 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 229
Query: 797 T 797
           T
Sbjct: 230 T 230

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 43  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 102
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 103 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 159
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 160 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 216
Query: 797 T 797
           T
Sbjct: 217 T 217

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 44  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 103
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 104 GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 160
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 161 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 217
Query: 797 T 797
           T
Sbjct: 218 T 218

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 38  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 97
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 98  GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 154
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 155 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 211
Query: 797 T 797
           T
Sbjct: 212 T 212

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Query: 353 LPDINYIDLSRNG--FTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQT--WSLPSLQ-- 406
           LP + ++DLSRNG  F G         + L+Y ++S N    G+I   +    L  L+  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN----GVITMSSNFLGLEQLEHL 401
Query: 407 NFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGS- 465
           +F  S          F S +++  ++    +         +    LE + +A N    + 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 466 IPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGS 525
           +P++   L  L  LDLS   L    P  F S SSL VLN++ N +  S+P G   RL   
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSL 520
Query: 526 SA--YAGNPKLCGAP 538
                  NP  C  P
Sbjct: 521 QKIWLHTNPWDCSCP 535

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 37  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 96
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 97  GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 153
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 154 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 210
Query: 797 T 797
           T
Sbjct: 211 T 211

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 36  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 95
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 96  GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 152
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 153 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 209
Query: 797 T 797
           T
Sbjct: 210 T 210

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI------VLGVARGLC 715
           H N++RL+G C  +   Y++ + +  G+    +RT+    A+ ++      V   A G+ 
Sbjct: 171 HPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE---GARLRVKTLLQMVGDAAAGME 227
Query: 716 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK-------IAWT 768
           +L   C     H DL A N +  E     +++FG     + ADG + A        + WT
Sbjct: 228 YLESKC---CIHRDLAARNCLVTEKNVLKISDFGMS--REEADGVYAASGGLRQVPVKWT 282
Query: 769 ESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            + E  N  +     DV+ FG ++ E  + G
Sbjct: 283 -APEALNYGRYSSESDVWSFGILLWETFSLG 312

>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 662 HKNLIRLLGFCYN----RHQAYLLYDYLPNGNLS---EKIRTKRDWAAKYKIV---LGVA 711
           H N++RL+ +C      +H+A+LL  +   G L    E+++ K ++  + +I+   LG+ 
Sbjct: 85  HPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGIC 144
Query: 712 RGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 749
           RGL  +H   Y    H DLK +NI+  +  +P L + G
Sbjct: 145 RGLEAIHAKGYA---HRDLKPTNILLGDEGQPVLMDLG 179

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 103/272 (37%), Gaps = 51/272 (18%)
Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
           T + V + K E  A            +    + N+++LLG C       LL++Y+  G+L
Sbjct: 78  TMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDL 137
Query: 691 SEKIRTKR--------------------------DWAAKYKIVLGVARGLCFLHHDCYPA 724
           +E +R+                              A +  I   VA G+ +L       
Sbjct: 138 NEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---K 194
Query: 725 IPHGDLKASNIVFDENMEPHLAEFG-----FKYLTQLADGSFPAKIAWTESGE-FYNAMK 778
             H DL   N +  ENM   +A+FG     +      ADG+    I W      FYN   
Sbjct: 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYT 254
Query: 779 EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE--MYNENEVGSSSSLQDEI 836
            E   DV+ +G ++ EI + G           +P  G+  E  +Y   + G+  +  +  
Sbjct: 255 TE--SDVWAYGVVLWEIFSYGL----------QPYYGMAHEEVIYYVRD-GNILACPENC 301
Query: 837 KLVL-DVALLCTRSTPSDRPSMEEALKLLSGL 867
            L L ++  LC    P+DRPS     ++L  +
Sbjct: 302 PLELYNLMRLCWSKLPADRPSFCSIHRILQRM 333

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ ++LP 
Sbjct: 41  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPY 100
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L E ++  ++     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 101 GSLREYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 157
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 158 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 214
Query: 797 T 797
           T
Sbjct: 215 T 215

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 88  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 147
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 148 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 204
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 205 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 252

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 20/181 (11%)
Query: 631 TGITVSVKKIEWGATR-IKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 41  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 100
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++   +     K++     + +G+ +L    Y    H DL   NI+ +      
Sbjct: 101 GSLRDYLQAHAERIDHIKLLQYTSQICKGMEYLGTKRY---IHRDLATRNILVENENRVK 157
Query: 745 LAEFGF-KYLTQLAD-------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
           + +FG  K L Q  +       G  P  I W  + E     K  +  DV+ FG ++ E+ 
Sbjct: 158 IGDFGLTKVLPQDKEXXKVKEPGESP--IFWY-APESLTESKFSVASDVWSFGVVLYELF 214
Query: 797 T 797
           T
Sbjct: 215 T 215

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 27/248 (10%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K ++ G T  K   +F++    +G   H N+I L G         ++ +Y+ NG+
Sbjct: 37  ICVAIKTLKAGYTD-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGS 95
Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   +R         ++V    G+  G+ +L    Y    H DL A NI+ + N+   ++
Sbjct: 96  LDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSY---VHRDLAARNILVNSNLVCKVS 152
Query: 747 EFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           +FG  + L    + ++  +     I WT + E     K     DV+ +G ++ E+++ G 
Sbjct: 153 DFGMSRVLEDDPEAAYTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGE 211
Query: 801 LTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
                  + N+ +   + E Y     +    +L    +L+LD    C +   SDRP   +
Sbjct: 212 --RPYWDMSNQDVIKAIEEGYRLPPPMDCPIALH---QLMLD----CWQKERSDRPKFGQ 262
Query: 860 ALKLLSGL 867
            + +L  L
Sbjct: 263 IVNMLDKL 270

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 679 YLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLG--VARGLCFLHHDCYPAIPHGDLKASNI 735
           ++L  Y+ +G+L + IR+ +R+   K  I  G  VARG+ +L    +    H DL A N 
Sbjct: 99  HVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFV---HRDLAARNC 155
Query: 736 VFDENMEPHLAEFG---------FKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVY 786
           + DE+    +A+FG         +  + Q      P K    ES + Y    +    DV+
Sbjct: 156 MLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKS---DVW 212
Query: 787 GFGEIILEILTNG 799
            FG ++ E+LT G
Sbjct: 213 SFGVLLWELLTRG 225

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 89  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 148
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 149 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 205
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 206 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 253

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 660 VRHKNLIRLLGFCYNRHQA-----YLLYDYLPNGNLSEKIRTKR-DWAAKYKIVLGVARG 713
           ++H+N+++ +G    R  +     +L+  +   G+LS+ ++     W     I   +ARG
Sbjct: 75  MKHENILQFIG-AEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARG 133
Query: 714 LCFLHHDC-------YPAIPHGDLKASNIVFDENMEPHLAEFG--FKYLTQLADGSFPAK 764
           L +LH D         PAI H D+K+ N++   N+   +A+FG   K+    + G    +
Sbjct: 134 LAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQ 193
Query: 765 IAWTE-------SGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLL 817
           +            G         + +D+Y  G ++ E+ +  R T A     + P+D  +
Sbjct: 194 VGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS--RCTAA-----DGPVDEYM 246
Query: 818 GEMYNENEVGSSSSLQDEIKLVL 840
             +  E E+G   SL+D  ++V+
Sbjct: 247 --LPFEEEIGQHPSLEDMQEVVV 267

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 27/248 (10%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K ++ G T  K   +F++    +G   H N+I L G         ++ +Y+ NG+
Sbjct: 43  ICVAIKTLKAGYTD-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGS 101
Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   +R         ++V    G+  G+ +L    Y    H DL A NI+ + N+   ++
Sbjct: 102 LDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSY---VHRDLAARNILVNSNLVCKVS 158
Query: 747 EFGF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           +FG  + L    + ++  +     I WT + E     K     DV+ +G ++ E+++ G 
Sbjct: 159 DFGMSRVLEDDPEAAYTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGE 217
Query: 801 LTNAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
                  + N+ +   + E Y     +    +L    +L+LD    C +   SDRP   +
Sbjct: 218 --RPYWDMSNQDVIKAIEEGYRLPPPMDCPIALH---QLMLD----CWQKERSDRPKFGQ 268
Query: 860 ALKLLSGL 867
            + +L  L
Sbjct: 269 IVNMLDKL 276

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 115 SLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG---NIPWQLGNMSEVQYLDIAG 171
           ++ +L L GN L+D   + L  L  +T++ +  N  Q     +  +L N+ E+  ++   
Sbjct: 64  NVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 172 ANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES-F 230
            +L   +  +L+NLT    L+L+ NQL       F ++T L  LDL +N+L   +PE  F
Sbjct: 122 QSLPDGVFDKLTNLT---YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVF 177
Query: 231 ADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNN 268
             L  L+ LSL  N++  +VP+ +  +L SL  +++ NN
Sbjct: 178 DKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 62  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 121
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 122 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 178
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 179 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 226

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 70  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 129
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 130 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 187 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 234

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 631 TGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYLPN 687
           TG  V+VKK++      ++     I  + +++H N+++  G CY+  R    L+ +YLP 
Sbjct: 39  TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 98
Query: 688 GNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L + ++  ++     K++     + +G+ +L    Y    H +L   NI+ +      
Sbjct: 99  GSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY---IHRNLATRNILVENENRVK 155
Query: 745 LAEFGFKYLTQLADGSFPAK------IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           + +FG   +       +  K      I W  + E     K  +  DV+ FG ++ E+ T
Sbjct: 156 IGDFGLTKVLPQDKEYYKVKEPGESPIFWY-APESLTESKFSVASDVWSFGVVLYELFT 213

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 67  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 126
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 127 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 183
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 184 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 231

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 68  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 127
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 128 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 184
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 185 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 232

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 631 TGITVSVKKIEWGATRI---KIVSEFITRIGTVRHKNLIRLLG-FCYNR-----HQAYLL 681
           TG+ V+VKK+      I   K     +  +  ++H+N+I LL  F   R     +  YL+
Sbjct: 46  TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV 105
Query: 682 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
             +L   +L+  ++ ++  D   ++ ++  + RGL ++H      I H DLK SN+  +E
Sbjct: 106 -THLMGADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHS---ADIIHRDLKPSNLAVNE 160
Query: 740 NMEPHLAEFGFKYLTQLADGSFPAKIA--WTESGEFY-NAMKEEMYMDVYGFGEIILEIL 796
           + E  + +FG   L +  D      +A  W  + E   NAM     +D++  G I+ E+L
Sbjct: 161 DCELKILDFG---LARHTDDEMTGYVATRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELL 217
Query: 797 TNGRLTNAGSS 807
           T GR    G+ 
Sbjct: 218 T-GRTLFPGTD 227

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 69  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 128
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY----- 752
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 129 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 185
Query: 753 ----LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
               +        P K    ES       K     DV+ FG ++ E++T G
Sbjct: 186 EXXSVHNKTGAKLPVKWMALES---LQTQKFTTKSDVWSFGVLLWELMTRG 233

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 69  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 128
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 129 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 185
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 186 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 233

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 70  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 129
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 130 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 187 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 234

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 22/151 (14%)
Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKI------VLGVARGLC 715
           H N++RL+G C  +   Y++ + +  G+    +RT+    A+ ++      V   A G+ 
Sbjct: 171 HPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE---GARLRVKTLLQMVGDAAAGME 227
Query: 716 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK-------IAWT 768
           +L   C     H DL A N +  E     +++FG     + ADG   A        + WT
Sbjct: 228 YLESKC---CIHRDLAARNCLVTEKNVLKISDFGMS--REEADGVXAASGGLRQVPVKWT 282
Query: 769 ESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
            + E  N  +     DV+ FG ++ E  + G
Sbjct: 283 -APEALNYGRYSSESDVWSFGILLWETFSLG 312

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 645 TRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY-DYLPNGNLSEKIRTKRDW 700
           T I  VS+F+T    +    H N++ LLG C     + L+   Y+ +G+L   IR +   
Sbjct: 65  TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN 124
Query: 701 AAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF------- 750
                ++   L VA+G+ +L         H DL A N + DE     +A+FG        
Sbjct: 125 PTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 181
Query: 751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           +Y +          + W  + E     K     DV+ FG ++ E++T G
Sbjct: 182 EYYSVHNKTGAKLPVKWM-ALESLQTQKFTTKSDVWSFGVLLWELMTRG 229

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 717
           +RH N++RL G+ ++  + YL+ +Y P G + ++++  +K D       +  +A  L + 
Sbjct: 70  LRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYC 129
Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           H      + H D+K  N++     E  +A+FG+
Sbjct: 130 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 159

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 717
           +RH N++RL G+ ++  + YL+ +Y P G + ++++  +K D       +  +A  L + 
Sbjct: 70  LRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYC 129
Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           H      + H D+K  N++     E  +A+FG+
Sbjct: 130 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 159

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 29/191 (15%)
Query: 631 TGITVSVKKI----EWGATRIKIVSEFITRIGTVRHKNLIRLLGFC------YNRHQA-- 678
           TG  V++KK+    E     I  + E I  +  ++H+N++ L+  C      YNR +A  
Sbjct: 42  TGQKVALKKVLMENEKEGFPITALRE-IKILQLLKHENVVNLIEICRTKASPYNRCKASI 100
Query: 679 YLLYDYLPN--GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
           YL++D+  +    L   +  K   +   +++  +  GL ++H +    I H D+KA+N++
Sbjct: 101 YLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVL 157
Query: 737 FDENMEPHLAEFGFKYLTQLADGSFPAKIA------WTESGEFYNAMKEEMY---MDVYG 787
              +    LA+FG      LA  S P +        W    E    + E  Y   +D++G
Sbjct: 158 ITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVVTLWYRPPELL--LGERDYGPPIDLWG 215
Query: 788 FGEIILEILTN 798
            G I+ E+ T 
Sbjct: 216 AGCIMAEMWTR 226

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 12/158 (7%)
Query: 653 FITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK--------Y 704
            + R+    H N++RL+  C        +   L   ++ + +RT  D A           
Sbjct: 56  LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIK 115
Query: 705 KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK 764
            ++    RGL FLH +C   I H DLK  NI+        LA+FG   +       FP  
Sbjct: 116 DLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFPVV 172
Query: 765 IA-WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL 801
           +  W  + E          +D++  G I  E+     L
Sbjct: 173 VTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 210

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 717
           +RH N++RL G+ ++  + YL+ +Y P G +  +++  ++ D       +  +A  L + 
Sbjct: 69  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYC 128
Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           H      + H D+K  N++   N E  +A+FG+
Sbjct: 129 HSK---RVIHRDIKPENLLLGSNGELKIADFGW 158

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 717
           +RH N++RL G+ ++  + YL+ +Y P G +  +++  ++ D       +  +A  L + 
Sbjct: 69  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYC 128
Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           H      + H D+K  N++   N E  +A+FG+
Sbjct: 129 HSK---RVIHRDIKPENLLLGSNGELKIADFGW 158

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K ++ G T  K   +F++    +G   H N+I L G         ++ +++ NG+
Sbjct: 62  IFVAIKTLKSGYTE-KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGS 120
Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   +R         ++V    G+A G+ +L    Y    H DL A NI+ + N+   ++
Sbjct: 121 LDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNY---VHRDLAARNILVNSNLVCKVS 177
Query: 747 EFGFKYLTQLADGSFPA---------KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           +FG     +  D S P           I WT + E     K     DV+ +G ++ E+++
Sbjct: 178 DFGLSRFLE-DDTSDPTYTSALGGKIPIRWT-APEAIQYRKFTSASDVWSYGIVMWEVMS 235
Query: 798 NG 799
            G
Sbjct: 236 YG 237

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 158 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 217
           L  ++ + YL + G  L          LT L+ L L  NQL       F ++T L  L+L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 218 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNNYFSGSLPE 276
           + N+L       F  L NL  L L YN++  ++PE +  +L  L+ L ++ N    S+P+
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPD 198
Query: 277 NL-GRNSKLRWVDVSTNNFNGSIP 299
            +  R + L+++ +  N ++ + P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 167 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI 226
           +D +G +L+ S+P  +   T++  L+L+ NQ+    P  F R+T L  LDL +N+L+   
Sbjct: 22  VDCSGKSLA-SVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 227 PESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 268
              F  L  L  LSL  N++      +   L SL  +++ NN
Sbjct: 79  AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 23/246 (9%)
Query: 633 ITVSVKKIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K ++ G T  K   +F++    +G   H N+I L G         ++ +Y+ NG+
Sbjct: 58  ICVAIKTLKAGYTD-KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGS 116
Query: 690 LSEKIRTKRDWAAKYKIVLGVARGL-CFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
           L   +R K D       ++G+ RG+   + +    +  H DL A NI+ + N+   +++F
Sbjct: 117 LDAFLR-KNDGRFTVIQLVGMLRGIGSGMKYLSDMSAVHRDLAARNILVNSNLVCKVSDF 175
Query: 749 GF-KYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLT 802
           G  + L    + ++  +     I WT + E     K     DV+ +G ++ E+++ G   
Sbjct: 176 GMSRVLEDDPEAAYTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGE-- 232
Query: 803 NAGSSLQNKPIDGLLGEMYN-ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 861
                + N+ +   + E Y     +    +L    +L+LD    C +   SDRP   + +
Sbjct: 233 RPYWDMSNQDVIKAIEEGYRLPPPMDCPIALH---QLMLD----CWQKERSDRPKFGQIV 285
Query: 862 KLLSGL 867
            +L  L
Sbjct: 286 NMLDKL 291

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHF-PGGIQSLRNLLVLDAFSNSF 78
           L  L LS N F     +   N  SL  L I  N        G +++L NL  LD   +  
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 79  --SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFK---SLEFLHLAGNLL---NDQI 130
             S     ++  L HL+ LNL+   ++ P+  +  +FK    LE L LA   L   + Q 
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLS---YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 131 PAE-LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL-SGSIPK--ELSNLT 186
           P + L +LK    + + ++    +       +  +Q+L++ G +   G+I K   L  L 
Sbjct: 420 PFQNLHLLKV---LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476
Query: 187 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM 246
           +LE L L    L+      F+ +  +  +DLS NRL+    E+ + LK +  L+L  N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535
Query: 247 SGTVP 251
           S  +P
Sbjct: 536 SIILP 540

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 717
           +RH N++RL G+ ++  + YL+ +Y P G +  +++  +K D       +  +A  L + 
Sbjct: 70  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 129
Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           H      + H D+K  N++     E  +A+FG+
Sbjct: 130 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 159

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V+VK +   A   + +  F   +G +R   H N++  +G+   + Q  ++  +    +L 
Sbjct: 38  VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 96
Query: 692 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
                I TK +      I    A+G+ +LH     +I H DLK++NI   E++   + +F
Sbjct: 97  HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 153
Query: 749 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           G   +     GS         I W   E     +        DVY FG ++ E++T
Sbjct: 154 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 209

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V+VK +   A   + +  F   +G +R   H N++  +G+   + Q  ++  +    +L 
Sbjct: 38  VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 96
Query: 692 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
                I TK +      I    A+G+ +LH     +I H DLK++NI   E++   + +F
Sbjct: 97  HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 153
Query: 749 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           G   +     GS         I W   E     +        DVY FG ++ E++T
Sbjct: 154 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 209

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V+VK +   A   + +  F   +G +R   H N++  +G+   + Q  ++  +    +L 
Sbjct: 33  VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 91
Query: 692 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
                I TK +      I    A+G+ +LH     +I H DLK++NI   E++   + +F
Sbjct: 92  HHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDF 148
Query: 749 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           G   +     GS         I W   E     +        DVY FG ++ E++T
Sbjct: 149 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 204

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 629 LPTGITVSVK---KIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY 682
           +P G TV +    KI    T  K   EF+     + ++ H +L+RLLG C +     L+ 
Sbjct: 60  VPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS-PTIQLVT 118
Query: 683 DYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
             +P+G L E +   +D      ++   + +A+G+ +L       + H DL A N++   
Sbjct: 119 QLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKS 175
Query: 740 NMEPHLAEFGFKYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILE 794
                + +FG   L +  +  + A      I W  + E  +  K     DV+ +G  I E
Sbjct: 176 PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWM-ALECIHYRKFTHQSDVWSYGVTIWE 234
Query: 795 ILTNGRLTNAGSSLQNKPIDGL 816
           ++T G           KP DG+
Sbjct: 235 LMTFG----------GKPYDGI 246

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V+VK +   A   + +  F   +G +R   H N++  +G+   + Q  ++  +    +L 
Sbjct: 35  VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 93
Query: 692 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
                I TK +      I    A+G+ +LH     +I H DLK++NI   E++   + +F
Sbjct: 94  HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 150
Query: 749 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           G   +     GS         I W   E     +        DVY FG ++ E++T
Sbjct: 151 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 206

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVR----------HKNLIRLLGFCYNRHQAYL 680
           TG   +VK +E  A R+        R  T R          H ++I L+    +    +L
Sbjct: 118 TGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFL 177
Query: 681 LYDYLPNGNLSEKIRTKRDWAAK--YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
           ++D +  G L + +  K   + K    I+  +   + FLH +    I H DLK  NI+ D
Sbjct: 178 VFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLD 234
Query: 739 ENMEPHLAEFGF 750
           +NM+  L++FGF
Sbjct: 235 DNMQIRLSDFGF 246

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V+VK +   A   + +  F   +G +R   H N++  +G+   + Q  ++  +    +L 
Sbjct: 61  VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 119
Query: 692 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
                I TK +      I    A+G+ +LH     +I H DLK++NI   E++   + +F
Sbjct: 120 HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 176
Query: 749 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           G   +     GS         I W   E     +        DVY FG ++ E++T
Sbjct: 177 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 232

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V+VK +   A   + +  F   +G +R   H N++  +G+   + Q  ++  +    +L 
Sbjct: 60  VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 118
Query: 692 EK---IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
                I TK +      I    A+G+ +LH     +I H DLK++NI   E++   + +F
Sbjct: 119 HHLHIIETKFEMIKLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDF 175
Query: 749 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           G   +     GS         I W   E     +        DVY FG ++ E++T
Sbjct: 176 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMT 231

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 648 KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-----RTKRDWAA 702
           + V + I  +  +RH  L+ L     + ++  ++Y+++  G L EK+     +   D A 
Sbjct: 199 ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAV 258
Query: 703 KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEPHLAEFGFKYLTQLADGS 760
           +Y  +  V +GLC +H + Y    H DLK  NI+F    + E  L +FG   LT   D  
Sbjct: 259 EY--MRQVCKGLCHMHENNY---VHLDLKPENIMFTTKRSNELKLIDFG---LTAHLDPK 310
Query: 761 FPAKIAWTESGEF 773
              K+  T + EF
Sbjct: 311 QSVKVT-TGTAEF 322

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 629 LPTGITVSVK---KIEWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLLY 682
           +P G TV +    KI    T  K   EF+     + ++ H +L+RLLG C +     L+ 
Sbjct: 37  VPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVT 95
Query: 683 DYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
             +P+G L E +   +D      ++   + +A+G+ +L       + H DL A N++   
Sbjct: 96  QLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKS 152
Query: 740 NMEPHLAEFGFKYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILE 794
                + +FG   L +  +  + A      I W  + E  +  K     DV+ +G  I E
Sbjct: 153 PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWM-ALECIHYRKFTHQSDVWSYGVTIWE 211
Query: 795 ILTNGRLTNAGSSLQNKPIDGL 816
           ++T G           KP DG+
Sbjct: 212 LMTFG----------GKPYDGI 223

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIR--TKRDWAAKYKIVLGVARGLCFL 717
           +RH N++RL G+ ++  + YL+ +Y P G +  +++  +K D       +  +A  L + 
Sbjct: 91  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 150
Query: 718 HHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           H      + H D+K  N++     E  +A+FG+
Sbjct: 151 HSK---RVIHRDIKPENLLLGSAGELKIADFGW 180

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 631 TGITVSVK---KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           TG  V+VK   K +   T ++ +   +  +  + H N+++L          YL+ +Y   
Sbjct: 39  TGREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASG 98
Query: 688 GNLSEKI----RTKRDWA-AKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
           G + + +    R K   A AK++ ++   +  C   H  Y  I H DLKA N++ D +M 
Sbjct: 99  GEVFDYLVAHGRMKEKEARAKFRQIVSAVQ-YC---HQKY--IVHRDLKAENLLLDGDMN 152
Query: 743 PHLAEFGFKYLTQLAD------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEIL 796
             +A+FGF     + +      GS P        G+ Y+  +    +DV+  G +IL  L
Sbjct: 153 IKIADFGFSNEFTVGNKLDTFCGSPPYAAPELFQGKKYDGPE----VDVWSLG-VILYTL 207
Query: 797 TNGRLTNAGSSLQ 809
            +G L   G +L+
Sbjct: 208 VSGSLPFDGQNLK 220

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
           V+VK +   A   + +  F   +G +R   H N++  +G+   + Q  ++  +    +L 
Sbjct: 37  VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TKPQLAIVTQWCEGSSLY 95
Query: 692 EKIR---TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEF 748
             +    TK +      I    ARG+ +LH     +I H DLK++NI   E+    + +F
Sbjct: 96  HHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDF 152
Query: 749 GFKYLTQLADGS-----FPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           G   +     GS         I W   E     ++       DVY FG ++ E++T
Sbjct: 153 GLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT 208

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 648 KIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI-----RTKRDWAA 702
           + V + I  +  +RH  L+ L     + ++  ++Y+++  G L EK+     +   D A 
Sbjct: 93  ETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAV 152
Query: 703 KYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEPHLAEFGFKYLTQLADGS 760
           +Y  +  V +GLC +H + Y    H DLK  NI+F    + E  L +FG   LT   D  
Sbjct: 153 EY--MRQVCKGLCHMHENNY---VHLDLKPENIMFTTKRSNELKLIDFG---LTAHLDPK 204
Query: 761 FPAKIAWTESGEF 773
              K+  T + EF
Sbjct: 205 QSVKVT-TGTAEF 216

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 10/89 (11%)
Query: 437 NLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGS 496
           +L+  +P +    + L+R +L   ++ G+       LPVLG LDLSHN L   +P    +
Sbjct: 47  SLATLMPYTRLTQLNLDRCELTKLQVDGT-------LPVLGTLDLSHNQLQS-LPLLGQT 98
Query: 497 CSSLTVLNVSFNDISGSIPSGKVLRLMGS 525
             +LTVL+VSFN ++ S+P G  LR +G 
Sbjct: 99  LPALTVLDVSFNRLT-SLPLG-ALRGLGE 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	872
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-167
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-137
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-134
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-109
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-80
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-81
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-79
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-70
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-75
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-19
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-30
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	9e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-20
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	8e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-20
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-21
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-20
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	8e-20
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-19
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-19
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	6e-19
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-18
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-18
3q4u_A	301	Activin receptor type-1; structural genomics conso	3e-18
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	4e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-12
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	5e-12
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-10
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-10
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-04
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-10
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	4e-10
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	4e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-10
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	9e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-09
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-09
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-09
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-09
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-09
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-09
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	4e-09
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-09
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	5e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	5e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	5e-09
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	6e-09
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	6e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	7e-09
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	8e-09
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	8e-09
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-08
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-08
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	4e-08
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	5e-08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	7e-08
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	8e-08
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	8e-08
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	9e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-07
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-07
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-07
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-07
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-07
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	3e-07
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-07
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-07
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	6e-07
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	7e-07
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	8e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	9e-07
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	9e-07
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-06
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-06
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-06
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-06
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-06
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-06
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-06
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-06
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-06
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	3e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	3e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-06
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	6e-06
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	6e-06
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	7e-06
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	7e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	8e-06
3aln_A	327	Dual specificity mitogen-activated protein kinase;	9e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-05
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-05
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-05
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-05
3uqc_A	286	Probable conserved transmembrane protein; structur	3e-05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	4e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	4e-05
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	6e-05
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	6e-05
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	7e-05
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	7e-05
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	8e-05
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	8e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-04
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	1e-04
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-04
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-04
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-04
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-04
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-04
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	4e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	4e-04
3niz_A	311	Rhodanese family protein; structural genomics, str	4e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	5e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	5e-04
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	5e-04
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	7e-04
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	7e-04
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  503 bits (1298), Expect = e-167
 Identities = 169/551 (30%), Positives = 265/551 (48%), Gaps = 20/551 (3%)

Query: 4   LSGALPGKPLRIFFN--ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGG 61
            S  +P        +   L  L++S N  SG F   I   T L  L+IS N F G  P  
Sbjct: 212 FSTGIPF-----LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 62  IQSLRNLLVLDAFSNSFSGSVPAEIS-QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
              L++L  L    N F+G +P  +S   + L  L+L+G++F G +P  FGS   LE L 
Sbjct: 267 P--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 121 LAGNLLNDQIPAE-LGMLKTVTHMEIGYNFYQGNIPWQLGNMS-EVQYLDIAGANLSGSI 178
           L+ N  + ++P + L  ++ +  +++ +N + G +P  L N+S  +  LD++  N SG I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 179 PKELSN--LTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
              L       L+ L+L  N   G++P   S  + L SL LS N LSG IP S   L  L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG 296
           R L L  N + G +P+ L+ + +LE L +  N  +G +P  L   + L W+ +S N   G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 297 SIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDI 356
            IP  I     L  L L +N+F+G++   L +C SL+ L L  N F+G IP    +    
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-- 562

Query: 357 NYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP-KLGGMIPAQTWSLPSLQNFSASACNI 415
               ++ N   G     I      +  + + N  +  G+   Q   L +    + ++   
Sbjct: 563 --GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 416 TGNLPP-FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLP 474
            G+  P F +  S+  ++   N LSG IP+ + +   L  ++L +N + GSIP+ +  L 
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 475 VLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKL 534
            L +LDLS N L G+IP    + + LT +++S N++SG IP          + +  NP L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740

Query: 535 CGAPLQPCHAS 545
           CG PL  C  S
Sbjct: 741 CGYPLPRCDPS 751

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  427 bits (1100), Expect = e-137
 Identities = 165/513 (32%), Positives = 256/513 (49%), Gaps = 22/513 (4%)

Query: 20  LVDLNLSHNSFS---GQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           +  ++LS    +         + +LT L SL +S ++ +G    G +   +L  LD   N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 77  SFSGSVPA--EISQLEHLKVLNLAGSYFSGPIP-SQFGSFKSLEFLHLAGNLLNDQIPAE 133
           S SG V     +     LK LN++ +    P   S      SLE L L+ N ++      
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 134 L---GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLES 190
                    + H+ I  N   G++   +     +++LD++  N S  IP  L + + L+ 
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQH 227

Query: 191 LFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTV 250
           L +  N+L+G      S  T LK L++S N+  GPIP     LK+L+ LSL  N+ +G +
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285

Query: 251 PESLV-QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD-ICSGGVL 308
           P+ L     +L  L +  N+F G++P   G  S L  + +S+NNF+G +P D +     L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 309 FKLILFSNNFTGSLSPSLSNCS-SLVRLRLEDNSFSGEIP--LKFSQLPDINYIDLSRNG 365
             L L  N F+G L  SL+N S SL+ L L  N+FSG I   L  +    +  + L  NG
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 366 FTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP-FKS 424
           FTG IP  ++  S+L   ++S N  L G IP+   SL  L++       + G +P     
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

Query: 425 CKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHN 484
            K++  +    N+L+G IP  +SNC  L  I L+NN+L G IP+ + RL  L +L LS+N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 485 SLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
           S SG IPA+ G C SL  L+++ N  +G+IP+ 
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  417 bits (1074), Expect = e-134
 Identities = 149/537 (27%), Positives = 247/537 (45%), Gaps = 20/537 (3%)

Query: 3   GLSGALPGKPLRIF-FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFP-- 59
            L+         +     L  L LS++  +G          SL SLD+SRN+ SG     
Sbjct: 61  PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTL 119

Query: 60  GGIQSLRNLLVLDAFSNSFSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQF---GSFKS 115
             + S   L  L+  SN+           +L  L+VL+L+ +  SG     +        
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 116 LEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS 175
           L+ L ++GN ++  +   +     +  +++  N +   IP+ LG+ S +Q+LDI+G  LS
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236

Query: 176 GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFA-DLK 234
           G   + +S  T+L+ L +  NQ  G +P     + +L+ L L++N+ +G IP+  +    
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACD 294

Query: 235 NLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP-ENLGRNSKLRWVDVSTNN 293
            L  L L  N   G VP        LE L + +N FSG LP + L +   L+ +D+S N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 294 FNGSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNC--SSLVRLRLEDNSFSGEIPLKF 350
           F+G +P  + +    L  L L SNNF+G + P+L     ++L  L L++N F+G+IP   
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 351 SQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSA 410
           S   ++  + LS N  +G IP+ +   SKL    +  N  L G IP +   + +L+    
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLIL 473

Query: 411 SACNITGNLPP-FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEV 469
              ++TG +P    +C +++ I    N L+G IP+ +     L  + L+NN   G+IP  
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

Query: 470 LARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSS 526
           L     L  LDL+ N  +G IPA     S     N         I +  + +    +
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  351 bits (903), Expect = e-109
 Identities = 122/441 (27%), Positives = 198/441 (44%), Gaps = 22/441 (4%)

Query: 91  HLKVLNLAGSYFS---GPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGY 147
            +  ++L+    +     + S   S   LE L L+ + +N  +        ++T +++  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 148 NFYQGNIPW--QLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFRNQLAGQVPW 204
           N   G +     LG+ S +++L+++   L           L  LE L L  N ++G    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 205 EFSRV---TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLE 261
            +        LK L +S N++SG +    +   NL  L +  N  S  +P  L    +L+
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 226

Query: 262 ILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGS 321
            L I  N  SG     +   ++L+ +++S+N F G IPP       L  L L  N FTG 
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFTGE 284

Query: 322 LSPSLS-NCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTD-INQASK 379
           +   LS  C +L  L L  N F G +P  F     +  + LS N F+G +P D + +   
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 380 LEYFNVSNNPKLGGMIPAQTWSL-PSLQNFSASACNITGNLPP---FKSCKSISVIESHM 435
           L+  ++S N +  G +P    +L  SL     S+ N +G + P        ++  +    
Sbjct: 345 LKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
           N  +G IP ++SNC EL  + L+ N L G+IP  L  L  L  L L  N L G+IP +  
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 496 SCSSLTVLNVSFNDISGSIPS 516
              +L  L + FND++G IPS
Sbjct: 464 YVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  274 bits (702), Expect = 4e-80
 Identities = 108/372 (29%), Positives = 174/372 (46%), Gaps = 22/372 (5%)

Query: 160 NMSEVQYLDIAGANLS---GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLD 216
              +V  +D++   L+    ++   L +LT LESLFL  + + G V   F    +L SLD
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 217 LSDNRLSGPIPE--SFADLKNLRLLSLMYNEMSGTVP-ESLVQLPSLEILFIWNNYFSGS 273
           LS N LSGP+    S      L+ L++  N +         ++L SLE+L +  N  SG+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 274 LPENLGRN---SKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCS 330
                  +    +L+ + +S N  +G +   +     L  L + SNNF+  + P L +CS
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCS 223

Query: 331 SLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPK 390
           +L  L +  N  SG+     S   ++  +++S N F G IP        L+Y +++ N K
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAEN-K 280

Query: 391 LGGMIPAQ-TWSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNLSGTIP-ESVS 447
             G IP   + +  +L     S  +  G +PP F SC  +  +    NN SG +P +++ 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 448 NCVELERIDLANNKLIGSIPEVLARLPV-LGVLDLSHNSLSGQIPAKFGSC--SSLTVLN 504
               L+ +DL+ N+  G +PE L  L   L  LDLS N+ SG I         ++L  L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 505 VSFNDISGSIPS 516
           +  N  +G IP 
Sbjct: 401 LQNNGFTGKIPP 412

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  303 bits (777), Expect = 4e-92
 Identities = 78/537 (14%), Positives = 160/537 (29%), Gaps = 52/537 (9%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFS 75
           +  L+L     SG+ P  I  LT L  L +  +          P GI +  +        
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 76  NSFSGSVPAEISQLE--HLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
             +  +      + +   L    +        I            +    N +   +   
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA 201

Query: 134 LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFL 193
           +  L  +    +G + +      +       +Y          +   +  NL  L  + +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYA-----QQYKTEDLKWDNLKDLTDVEV 256

Query: 194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRL--------SGPIPESFADLKNLRLLSLMYNE 245
           +      ++P     +  ++ ++++ NR                    + ++++ + YN 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 246 M-SGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICS 304
           + +  V  SL ++  L +L    N   G LP   G   KL  ++++ N     IP + C 
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCG 374

Query: 305 G-GVLFKLILFSNNFTG-SLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPD------- 355
               +  L    N            + S +  +    N         F  L         
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 356 INYIDLSRNGFTGGIPTDINQASKLEYFNVSNN------PKLGGMIPAQTWSLPSLQNFS 409
           ++ I+LS N  +       +  S L   N+  N                  +   L +  
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 410 ASACNITGNLPP---FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDL------ANN 460
                +T  L       +   +  I+   N+ S   P    N   L+   +        N
Sbjct: 495 LRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 461 KLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
           + +   PE +   P L  L +  N +   +  K     +++VL++  N       S 
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  259 bits (664), Expect = 4e-76
 Identities = 81/520 (15%), Positives = 156/520 (30%), Gaps = 73/520 (14%)

Query: 22  DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSG- 80
           + N   + +  Q  V + +   +  L +     SG  P  I  L  L VL   S+     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 81  ---SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 137
                P  IS     +       ++              +F  L  + +N          
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP---REDFSDLIKDCINS--------- 168

Query: 138 KTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
                     +  Q +I        +   +     N++  + K +  LTKL   ++  + 
Sbjct: 169 ----------DPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSP 217

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
              +   E       ++ +    +        + +LK+L  + +        +P  L  L
Sbjct: 218 FVAENICEA-----WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 258 PSLEILFIWNNYF--------SGSLPENLGRNSKLRWVDVSTNNF-NGSIPPDICSGGVL 308
           P ++++ +  N                +     K++ + +  NN     +   +     L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 309 FKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG 368
             L    N   G L P+  +   L  L L  N  +            +  +  + N    
Sbjct: 333 GMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK- 390

Query: 369 GIP--TDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCK 426
            IP   D    S +   + S N ++G +       L                 P      
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLD----------------PTPFKGI 433

Query: 427 SISVIESHMNNLSGTIPESVSNCVELERIDLANNKL-------IGSIPEVLARLPVLGVL 479
           ++S I    N +S    E  S    L  I+L  N L       +    E      +L  +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 480 DLSHNSLSGQIPA--KFGSCSSLTVLNVSFNDISGSIPSG 517
           DL  N L+  +    +  +   L  +++S+N  S   P+ 
Sbjct: 494 DLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  223 bits (571), Expect = 4e-63
 Identities = 70/518 (13%), Positives = 146/518 (28%), Gaps = 115/518 (22%)

Query: 15  IFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAF 74
                  + N  +        ++  NL  L  +++         P  +++L  + +++  
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 75  SNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAEL 134
            N                               +     + ++ +++  N          
Sbjct: 282 CNRGIS----------------GEQLKDDWQALADAPVGEKIQIIYIGYN---------- 315

Query: 135 GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLF 194
                        N     +   L  M ++  L+     L G +P    +  KL SL L 
Sbjct: 316 -------------NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361

Query: 195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSG-PIPESFADLKNLRLLSLMYNEMSG----- 248
            NQ+             +++L  + N+L   P       +  +  +   YNE+       
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 249 --TVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGG 306
              +  +  +  ++  + + NN  S    E     S L  +++  N              
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE---------- 471

Query: 307 VLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIP--LKFSQLPDINYIDLSRN 364
                     N     + +  N   L  + L  N  +  +    + + LP +  IDLS N
Sbjct: 472 -------IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 365 GFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKS 424
            F+   PT    +S L+ F + N     G                               
Sbjct: 524 SFS-KFPTQPLNSSTLKGFGIRNQRDAQG------------------------------- 551

Query: 425 CKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHN 484
                      N      PE ++ C  L ++ + +N +   + E +   P + VLD+  N
Sbjct: 552 -----------NRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDN 597

Query: 485 SLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
                  +         +  + ++     I     L +
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (268), Expect = 5e-24
 Identities = 28/247 (11%), Positives = 66/247 (26%), Gaps = 24/247 (9%)

Query: 290 STNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLK 349
           + N  N S        G  +      + +      SL++   +  L LE    SG +P  
Sbjct: 41  ALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA 100

Query: 350 FSQLPDINYIDLSRNGFTGG----IPTDINQASKLEYFNVSNNPKLGGMIPA-QTWSLPS 404
             QL ++  + L  +G         P  I+     E             +          
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 405 LQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIG 464
           L     ++     ++               ++N    + ++V    +L +  + N+  + 
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 465 SIPEVLARLPVLGVL-------------------DLSHNSLSGQIPAKFGSCSSLTVLNV 505
                                             ++ +     ++P    +   + ++NV
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 506 SFNDISG 512
           + N    
Sbjct: 281 ACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 11/133 (8%)

Query: 399 TWSLPSLQNFSASACNITGNLPPFKSCKSISVIES---HMNNLSGTIPESVSNCVELERI 455
                +  NF+           P  S  S   +          SG +P+++    ELE +
Sbjct: 53  GTQPGANWNFNKELDMWGAQ--PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 456 DLANNKLIG----SIPEVLARLPVLGVLDLSHNSLSGQIPAKFG--SCSSLTVLNVSFND 509
            L ++          P+ ++                            S L    ++ + 
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 510 ISGSIPSGKVLRL 522
              SI     + L
Sbjct: 171 QQKSIKKSSRITL 183

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  288 bits (739), Expect = 3e-86
 Identities = 108/511 (21%), Positives = 190/511 (37%), Gaps = 31/511 (6%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
               +  LNL+HN             + L SLD+  N  S   P   Q L  L VL+   
Sbjct: 23  LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           N  S       +   +L  L+L  +       + F   K+L  L L+ N L+        
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 136 MLKTVTHMEIGYNFYQGNIPW--QLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFL 193
            L+ +  + +  N  Q        +   S ++ L+++   +    P     + +L  LFL
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 194 FRNQLAGQVPWEFS---RVTTLKSLDLSDNRLSGPIPESFADLK--NLRLLSLMYNEMSG 248
              QL   +  +       T++++L LS+++LS     +F  LK  NL +L L YN ++ 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 249 TVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVL 308
              +S   LP LE  F+  N        +L     +R++++  +                
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------------F 307

Query: 309 FKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG 368
            K  +   +       S      L  L +EDN   G     F+ L ++ Y+ LS +  + 
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 369 GIPTDIN----QASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP--F 422
              T+        S L   N++ N K+  +       L  L+        I   L    +
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 423 KSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL--IGSIPEVLARLPVLGVLD 480
           +  ++I  I    N        S +    L+R+ L    L  + S P     L  L +LD
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
           LS+N+++            L +L++  N+++
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  279 bits (715), Expect = 8e-83
 Identities = 105/535 (19%), Positives = 180/535 (33%), Gaps = 34/535 (6%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
           L +L+L  NS             +LI+LD+S N  S    G    L NL  L   +N   
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 80  GSVPAEIS--QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 137
                E+       LK L L+ +      P  F +   L  L L    L   +  +L + 
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 138 KTVTHME---IGYNFYQGNIPWQLGNM--SEVQYLDIAGANLSGSIPKELSNLTKLESLF 192
              T +    +  +            +  + +  LD++  NL+       + L +LE  F
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 193 LFRNQLAGQVPWEFSRVTTLKSLDLSDN---------RLSGPIPESFADLKNLRLLSLMY 243
           L  N +          +  ++ L+L  +          L      SF  LK L  L++  
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 244 NEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG----RNSKLRWVDVSTNNFNGSIP 299
           N++ G        L +L+ L + N++ S     N       +S L  ++++ N  +    
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 300 PDICSGGVLFKLILFSNNFTGSLSPS-LSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINY 358
                 G L  L L  N     L+        ++  + L  N +       F+ +P +  
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 359 IDLSRNGFTG--GIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT 416
           + L R         P+       L   ++SNN  +  +       L  L+       N+ 
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 417 ---------GNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIP 467
                    G +   K    + ++    N       E   +  EL+ IDL  N L     
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 468 EVLARLPVLGVLDLSHNSLSGQIPAKFG-SCSSLTVLNVSFNDISGSIPSGKVLR 521
            V      L  L+L  N ++      FG +  +LT L++ FN    +  S     
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 632

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  248 bits (635), Expect = 1e-71
 Identities = 88/494 (17%), Positives = 159/494 (32%), Gaps = 52/494 (10%)

Query: 42  TSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSY 101
            S    D S    +   P  +    N+ VL+   N       A  ++   L  L++  + 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 102 FSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNM 161
            S   P        L+ L+L  N L+                                  
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA------------------------FC 96

Query: 162 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 221
           + +  L +   ++             L +L L  N L+        ++  L+ L LS+N+
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 222 LSGPIPESFADLKN--LRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG 279
           +     E      N  L+ L L  N++    P     +  L  LF+ N     SL E L 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 280 ---RNSKLRWVDVSTNNFNGSIPPDI--CSGGVLFKLILFSNNFTGSLSPSLSNCSSLVR 334
               N+ +R + +S +  + +            L  L L  NN     + S +    L  
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276

Query: 335 LRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGI---------PTDINQASKLEYFNV 385
             LE N+           L ++ Y++L R+     I                  LE+ N+
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 386 SNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIE------SHMNNLS 439
            +N  + G+       L +L+  S S    +      ++  S++         +  N +S
Sbjct: 337 EDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-NKIS 394

Query: 440 GTIPESVSNCVELERIDLANNKLIGSIP-EVLARLPVLGVLDLSHNSLSGQIPAKFGSCS 498
               ++ S    LE +DL  N++   +  +    L  +  + LS+N         F    
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 499 SLTVLNVSFNDISG 512
           SL  L +    +  
Sbjct: 455 SLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  229 bits (585), Expect = 1e-64
 Identities = 96/424 (22%), Positives = 164/424 (38%), Gaps = 25/424 (5%)

Query: 115 SLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL 174
           S E    +   L  Q+P +L     +T + + +N  +          S++  LD+    +
Sbjct: 5   SHEVADCSHLKL-TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 175 SGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLK 234
           S   P+    L  L+ L L  N+L+      F+  T L  L L  N +       F   K
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 235 NLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG--RNSKLRWVDVSTN 292
           NL  L L +N +S T   + VQL +L+ L + NN       E L    NS L+ +++S+N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 293 NFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLS---NCSSLVRLRLEDNSFSGEIPLK 349
                 P    + G LF L L +     SL+  L      +S+  L L ++  S      
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 350 FSQLPDIN--YIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQ- 406
           F  L   N   +DLS N              +LEYF +  N  +  +       L +++ 
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRY 300

Query: 407 --------NFSASACNITGNLP-PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDL 457
                     S S  ++       F+  K +  +    N++ G      +  + L+ + L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 458 ANNKL-IGSIP-EVLARLPV--LGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGS 513
           +N+   + ++  E    L    L +L+L+ N +S      F     L VL++  N+I   
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 514 IPSG 517
           +   
Sbjct: 421 LTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  224 bits (574), Expect = 4e-63
 Identities = 78/512 (15%), Positives = 173/512 (33%), Gaps = 58/512 (11%)

Query: 8   LPGKPLRIFFN-ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQ--- 63
           L  + L IF N  L  L LS N      P     +  L  L ++           +    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 64  SLRNLLVLDAFSNSFSGSVPAEISQLE--HLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL 121
           +  ++  L   ++  S +       L+  +L +L+L+ +  +      F     LE+  L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNI---------PWQLGNMSEVQYLDIAGA 172
             N +       L  L  V ++ +  +F + +I          +    +  +++L++   
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 173 NLSGSIPKELSNLTKLESLFLFRNQLAGQVP----WEFSRVTTLKSLDLSDNRLSGPIPE 228
           ++ G      + L  L+ L L  +  + +      +     + L  L+L+ N++S    +
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 229 SFADLKNLRLLSLMYNEMSGTVP-ESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWV 287
           +F+ L +L +L L  NE+   +  +    L ++  +++  N +      +      L+ +
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 288 DVSTNNFNG--SIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFS-- 343
            +         S P        L  L L +NN        L     L  L L+ N+ +  
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 344 ------GEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPA 397
                 G        L  ++ ++L  NGF            +L+  ++  N  L  +  +
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPAS 578

Query: 398 QTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVS-NCVELERID 456
              +  SL++ +                          N ++    +        L  +D
Sbjct: 579 VFNNQVSLKSLNLQK-----------------------NLITSVEKKVFGPAFRNLTELD 615

Query: 457 LANNKLIGSIPEVLARLPVLGVLDLSHNSLSG 488
           +  N    +   +      +  ++ +H ++  
Sbjct: 616 MRFNPFDCTCESI---AWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (460), Expect = 6e-48
 Identities = 71/364 (19%), Positives = 125/364 (34%), Gaps = 48/364 (13%)

Query: 165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 224
           +  D +   L+  +P +L   T +  L L  NQL       F+R + L SLD+  N +S 
Sbjct: 7   EVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 225 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKL 284
             PE    L  L++L+L +NE+S    ++     +L  L + +N           +   L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 285 RWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLS--NCSSLVRLRLEDNSF 342
             +D+S N  + +          L +L+L +N      S  L     SSL +L L  N  
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 343 SGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSL 402
               P  F  +  +  + L+       +   +                          + 
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL----------------------CLELAN 221

Query: 403 PSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL 462
            S++N S S   ++                +    L  T          L  +DL+ N L
Sbjct: 222 TSIRNLSLSNSQLST------------TSNTTFLGLKWT---------NLTMLDLSYNNL 260

Query: 463 IGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
                +  A LP L    L +N++            ++  LN+  +    SI    + ++
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 523 MGSS 526
              S
Sbjct: 321 DDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  154 bits (390), Expect = 4e-39
 Identities = 56/291 (19%), Positives = 105/291 (36%), Gaps = 19/291 (6%)

Query: 18  NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGG-IQSLRNLLVLDAFSN 76
           + L  LNL+ N  S         L  L  LD+  N       G   + L N+  +    N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSG--PIPSQFGSFKSLEFLHLAGNLLNDQIPAEL 134
            +        + +  L+ L L           PS F   ++L  L L+ N + +     L
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 135 GMLKTVTHMEIGYN--------FYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 186
             L+ +  +++ +N           G   + L  +S +  L++          +   +L 
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 187 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFAD-LKNLRLLSLMYNE 245
           +L+ + L  N L       F+   +LKSL+L  N ++    + F    +NL  L + +N 
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 246 MSGTVPE-----SLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST 291
              T        + +      I  + ++Y   + P +      +R  D S+
Sbjct: 621 FDCTCESIAWFVNWINETHTNIPELSSHYLCNT-PPHY-HGFPVRLFDTSS 669

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  272 bits (697), Expect = 5e-81
 Identities = 103/521 (19%), Positives = 182/521 (34%), Gaps = 31/521 (5%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           F EL  L+LS             +L+ L +L ++ N       G    L +L  L A   
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYF-SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           + +      I  L+ LK LN+A +   S  +P  F +  +LE L L+ N +      +L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 136 MLK----TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLES 190
           +L         +++  N      P     +  +  L +     S ++ K  +  L  LE 
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 191 LFLFRNQLAGQVPWE---FSRVTTLKSLDLSDNRLS------GPIPESFADLKNLRLLSL 241
             L   +   +   E    S +  L +L + + RL+        I + F  L N+   SL
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
           +   +      S       + L + N  F       L    +L +      +  G     
Sbjct: 290 VSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFS 342

Query: 302 ICSGGVLFKLILFSN--NFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYI 359
                 L  L L  N  +F G  S S    +SL  L L  N     +   F  L  + ++
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 360 DLSRNGFTGGIPTDI-NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN 418
           D   +         +      L Y ++S+              L SL+    +  +   N
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 419 LPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVL 476
             P  F   ++++ ++     L    P + ++   L+ +++++N            L  L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 477 GVLDLSHNSLSGQIPAKFGSC-SSLTVLNVSFNDISGSIPS 516
            VLD S N +      +     SSL  LN++ ND + +   
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  267 bits (685), Expect = 2e-79
 Identities = 106/524 (20%), Positives = 178/524 (33%), Gaps = 53/524 (10%)

Query: 12  PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVL 71
           P  + F+   +L+LS N          F+   L  LD+SR        G  QSL +L  L
Sbjct: 23  PDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81

Query: 72  DAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP 131
               N          S L  L+ L    +  +       G  K+L+ L++A NL+     
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--- 138

Query: 132 AELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLE-- 189
                                 +P    N++ +++LD++   +      +L  L ++   
Sbjct: 139 --------------------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 190 --SLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEM 246
             SL L  N +    P  F     L  L L +N  S  + +     L  L +  L+  E 
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 247 SGTVP---------ESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGS 297
                         E L  L   E    + +Y+   + +     + +    + +      
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 298 IPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDIN 357
                  G     L L +  F    +  L +   L        S  G        LP + 
Sbjct: 298 KDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLE 350

Query: 358 YIDLSRNG--FTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNI 415
           ++DLSRNG  F G         + L+Y ++S N  +   + +    L  L++      N+
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 416 TGNLPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSI-PEVLAR 472
                   F S +++  ++    +         +    LE + +A N    +  P++   
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 473 LPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS 516
           L  L  LDLS   L    P  F S SSL VLN+S N+       
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (591), Expect = 4e-66
 Identities = 95/512 (18%), Positives = 155/512 (30%), Gaps = 78/512 (15%)

Query: 24  NLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVP 83
                +F  + P  +    S  +LD+S N           S   L VLD           
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 84  AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHM 143
                L HL  L L G+         F    SL+ L      L       +G LKT+  +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 144 EIGYN-FYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLE----SLFLFRNQL 198
            + +N      +P    N++ +++LD++   +      +L  L ++     SL L  N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 199 AGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEMSGTVP------ 251
               P  F     L  L L +N  S  + +     L  L +  L+  E            
Sbjct: 190 NFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 252 ---ESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVL 308
              E L  L   E    + +Y+   + +     + +    + +             G   
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--W 306

Query: 309 FKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNG--F 366
             L L +  F    +  L +   L        S  G        LP + ++DLSRNG  F
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 367 TGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCK 426
            G         + L+Y ++S N                          +           
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFN-------------------------GVI---------- 386

Query: 427 SISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIP-EVLARLPVLGVLDLSHNS 485
                         T+  +     +LE +D  ++ L       V   L  L  LD+SH  
Sbjct: 387 --------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 486 LSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
                   F   SSL VL ++ N    +    
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  230 bits (588), Expect = 9e-66
 Identities = 96/521 (18%), Positives = 170/521 (32%), Gaps = 59/521 (11%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNF-SGHFPGGIQSLRNLLVLDAFSNSF 78
           L  L     + +      I +L +L  L+++ N   S   P    +L NL  LD  SN  
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 79  SGSVPAEISQLEHLKV----LNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAEL 134
                 ++  L  + +    L+L+ +  +   P  F     L  L L  N  +  +    
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTC 220

Query: 135 GMLKTVTHMEI---------GYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS---IPKEL 182
             ++ +  +E+              +      L  +  +   +   A L      I    
Sbjct: 221 --IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 183 SNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM 242
           + LT + S  L    +      +FS     + L+L + +           LK L   S  
Sbjct: 279 NCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN- 335

Query: 243 YNEMSGTVPESLVQLPSLEILFIWNN--YFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
                G    S V LPSLE L +  N   F G   ++    + L+++D+S N     +  
Sbjct: 336 ----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 301 DICSGGVLFKLILFSNNFTGSLSPS-LSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYI 359
           +      L  L    +N       S   +  +L+ L +            F+ L  +  +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 360 DLSRNGFTGGIPTDI-NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN 418
            ++ N F      DI  +   L + ++S   +L  + P    SL SLQ  + S       
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH------ 503

Query: 419 LPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPV-LG 477
                            NN              L+ +D + N ++ S  + L   P  L 
Sbjct: 504 -----------------NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 478 VLDLSHNSLSGQIPAK--FGSCSSLTVLNVSFNDISGSIPS 516
            L+L+ N  +     +           L V    +  + PS
Sbjct: 547 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  209 bits (535), Expect = 2e-58
 Identities = 95/486 (19%), Positives = 177/486 (36%), Gaps = 34/486 (6%)

Query: 20  LVDLNLSHNSF-SGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNL----LVLDAF 74
           L +LN++HN   S + P    NLT+L  LD+S N     +   ++ L  +    L LD  
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 75  SNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQ-FGSFKSLEFLHLAGNLLNDQI--- 130
            N  +   P    ++  L  L L  ++ S  +          LE   L      ++    
Sbjct: 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 131 PAELGMLKTVTHMEIGYN------FYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSN 184
             +   L+ + ++ I         +Y  +I      ++ V    +    +        S 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSY 302

Query: 185 LTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN 244
               + L L   +       +     +LK L  + N+       S  DL +L  L L  N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRN 357

Query: 245 EMS--GTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDI 302
            +S  G   +S     SL+ L +  N     +  N     +L  +D   +N        +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 303 CSGGV-LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEI-PLKFSQLPDINYID 360
                 L  L +   +   + +   +  SSL  L++  NSF     P  F++L ++ ++D
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
           LS+       PT  N  S L+  N+S+N     +       L SLQ    S  +I  +  
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 421 P--FKSCKSISVIESHMNNLSGTIPES--VSNCVELERIDLANNKLIGSIPEVLARLPVL 476
                   S++ +    N+ + T      +    +  ++ +   ++  + P     +PVL
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

Query: 477 GVLDLS 482
             L+++
Sbjct: 596 -SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (399), Expect = 2e-40
 Identities = 60/293 (20%), Positives = 105/293 (35%), Gaps = 13/293 (4%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
           +      L L +  F          L SL  L  + N     F      L +L  LD   
Sbjct: 302 YNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSR 356

Query: 76  N--SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
           N  SF G           LK L+L+ +     + S F   + LE L    + L       
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 134 -LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESL 191
               L+ + +++I +   +         +S ++ L +AG +   +   +  + L  L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 192 FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVP 251
            L + QL    P  F+ +++L+ L++S N         +  L +L++L    N +  +  
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 252 ESLVQLP-SLEILFIWNNYFSGSLPENLGRN--SKLRWVDVSTNNFNGSIPPD 301
           + L   P SL  L +  N F+ +             R + V       + P D
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  247 bits (633), Expect = 2e-75
 Identities = 95/374 (25%), Positives = 143/374 (38%), Gaps = 82/374 (21%)

Query: 177 SIPKELSNLTKLES----LFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG--PIPESF 230
            I K+L N T L S             G +    ++   + +LDLS   L    PIP S 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 231 ADLKNLRLLSLM-YNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDV 289
           A+L  L  L +   N + G +P ++ +L  L  L+I +   SG++P+ L +   L  +D 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 290 STNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLK 349
           S N  +G++PP                        S+S+  +LV +  + N  SG IP  
Sbjct: 133 SYNALSGTLPP------------------------SISSLPNLVGITFDGNRISGAIPDS 168

Query: 350 FSQLPD-INYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNF 408
           +         + +SRN  TG IP      + L + ++S N                    
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-------------------- 207

Query: 409 SASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPE 468
                                        L G       +    ++I LA N L   + +
Sbjct: 208 ----------------------------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 469 VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAY 528
            +     L  LDL +N + G +P        L  LNVSFN++ G IP G  L+    SAY
Sbjct: 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

Query: 529 AGNPKLCGAPLQPC 542
           A N  LCG+PL  C
Sbjct: 299 ANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  233 bits (596), Expect = 5e-70
 Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 7/253 (2%)

Query: 20  LVDLNLSHNSFSGQF--PVEIFNLTSLISLDIS-RNNFSGHFPGGIQSLRNLLVLDAFSN 76
           + +L+LS  +    +  P  + NL  L  L I   NN  G  P  I  L  L  L     
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
           + SG++P  +SQ++ L  L+ + +  SG +P    S  +L  +   GN ++  IP   G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 137 LKT-VTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
                T M I  N   G IP    N++ + ++D++   L G       +    + + L +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           N LA  +  +      L  LDL +NR+ G +P+    LK L  L++ +N + G +P+   
Sbjct: 231 NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 256 QLPSLEILFIWNN 268
            L   ++    NN
Sbjct: 290 -LQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  228 bits (583), Expect = 4e-68
 Identities = 71/287 (24%), Positives = 114/287 (39%), Gaps = 7/287 (2%)

Query: 22  DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG--HFPGGIQSLRNLLVLD-AFSNSF 78
             +  + ++ G           + +LD+S  N       P  + +L  L  L     N+ 
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
            G +P  I++L  L  L +  +  SG IP      K+L  L  + N L+  +P  +  L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 139 TVTHMEIGYNFYQGNIPWQLGNMSE-VQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
            +  +    N   G IP   G+ S+    + I+   L+G IP   +NL  L  + L RN 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
           L G     F      + + L+ N L+  +       KNL  L L  N + GT+P+ L QL
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICS 304
             L  L +  N   G +P+  G   +      + N      P   C+
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPACT 313

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  262 bits (672), Expect = 3e-75
 Identities = 79/586 (13%), Positives = 161/586 (27%), Gaps = 101/586 (17%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG--------HFPGGIQSLRNLLVL 71
           +  L+L+     G+ P  I  LT L  L    ++ +              +   R   + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 72  DAFSNSFSGSVPA---------------EISQLEHLKVLNLAGSYFSG------PIPSQF 110
             +   F                     E+  ++    ++L  +           I    
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 111 GSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIA 170
                L+ ++ A +       A              Y     N      N+ ++  +++ 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 171 GANLSGSIPKELSNLTKLESLFLFRNQLAG---------QVPWEFSRVTTLKSLDLSDNR 221
                  +P  L +L +L+SL +  N+            ++  +      ++   +  N 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 222 LSG-PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGR 280
           L   P   S   +  L LL  ++N++     E+      L  L +  N     +PE+   
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCA 616

Query: 281 N-SKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLED 339
              ++  +  S N     IP                         +  +   +  +    
Sbjct: 617 FTDQVEGLGFSHNKLK-YIPNIF----------------------NAKSVYVMGSVDFSY 653

Query: 340 NSFSGEIPLKFSQLPDIN-----YIDLSRNGFTGGIPTDINQASKLEYFNVSNN------ 388
           N    E       + D        + LS N             S +    +SNN      
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 389 PKLGGMIPAQTWSLPSLQNFSASACNITGNLPP---FKSCKSISVIESHMNNLSGTIPES 445
                       +   L         +T  L       +   +S ++   N  S + P  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQ 771

Query: 446 VSNCVELERIDL------ANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSS 499
             N  +L+   +        N+++   P  +   P L  L +  N +   +  K      
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQ 828

Query: 500 LTVLNVSFNDISGSIPSGKVLRLMGSSA----YAGNPKLCGAPLQP 541
           L +L+++ N    SI    V   + +      Y     + G     
Sbjct: 829 LYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  232 bits (594), Expect = 9e-65
 Identities = 95/531 (17%), Positives = 169/531 (31%), Gaps = 67/531 (12%)

Query: 22  DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 81
           + N   + +  Q  V++ N   +  L ++     G  P  I  L  L VL   ++S + S
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 82  VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSF-KSLEFLHLAGNLLNDQIPAELGMLKTV 140
                 +     +               F  + + L    L  + +N             
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR------------ 410

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG 200
                     +        ++ + Q  ++   N    I K +  LTKL+ ++   +    
Sbjct: 411 ------NPEMKPIKKDSRISLKDTQIGNLT--NRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 201 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSL 260
                 +     +  +    +       S+++LK+L  + L        +P+ L  LP L
Sbjct: 463 -----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 261 EILFIWNNYFSG---------SLPENLGRNSKLRWVDVSTNNFNG-SIPPDICSGGVLFK 310
           + L I  N              L ++     K++   +  NN         +     L  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 311 LILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLK-FSQLPDINYIDLSRNGFTGG 369
           L    N     L  +      L  L+L+ N    EIP    +    +  +  S N     
Sbjct: 578 LDCVHNKVR-HL-EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633

Query: 370 IPTD--INQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN----LPP-- 421
           IP          +   + S N K+G      + S+   +  +AS   ++ N     P   
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 422 FKSCKSISVIESHMNNLS-------GTIPESVSNCVELERIDLANNKLIGSIPE--VLAR 472
           F +   IS I    N ++            +  N   L  IDL  NKL  S+ +      
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATT 751

Query: 473 LPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSF------NDISGSIPSG 517
           LP L  +D+S+N  S   P +  + S L    +        N I    P+G
Sbjct: 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  196 bits (500), Expect = 2e-52
 Identities = 66/508 (12%), Positives = 142/508 (27%), Gaps = 126/508 (24%)

Query: 19  ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           +  D N  +        +   NL  L  +++         P  +  L  L  L+   N  
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 79  SG---------SVPAEISQLEHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLND 128
                       +  +      +++  +  +     P  +       L  L    N +  
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586

Query: 129 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTK 187
            + A                          G   ++  L +    +   IP++  +   +
Sbjct: 587 HLEA-------------------------FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ 620

Query: 188 LESLFLFRNQLAGQVP--WEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNE 245
           +E L    N+L   +P  +    V  + S+D S N++          + + + ++     
Sbjct: 621 VEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 246 MSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG 305
           +S                    N       E     S +  + +S N    SIP +    
Sbjct: 680 LS-------------------YNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKP 719

Query: 306 GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIP--LKFSQLPDINYIDLSR 363
                              +  N   L  + L  N  +  +    + + LP ++ +D+S 
Sbjct: 720 ----------------KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762

Query: 364 NGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFK 423
           N F+   PT    +S+L+ F + +     G                              
Sbjct: 763 NCFS-SFPTQPLNSSQLKAFGIRHQRDAEG------------------------------ 791

Query: 424 SCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSH 483
                       N +    P  ++ C  L ++ + +N +   + E L   P L +LD++ 
Sbjct: 792 ------------NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIAD 836

Query: 484 NSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
           N                 +  + ++   
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (282), Expect = 1e-25
 Identities = 47/410 (11%), Positives = 103/410 (25%), Gaps = 64/410 (15%)

Query: 135 GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLF 194
            +   +  M++ Y              +  +Y+DI  A    ++        ++ +   +
Sbjct: 168 RVTTELKGMKVTYKEDSKEHQNPDN--ANDKYMDIGVATCDSAVWLPAGTY-QVVAYTTY 224

Query: 195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 254
                 +   E   V   +S  + DN+L+               + +   E +  + +  
Sbjct: 225 SQSGIKRSELETQSVRG-ESFTVIDNKLTKD-----------ANVPIQLKETAEYIKDYK 272

Query: 255 VQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILF 314
                 E L   N  +      N   +           NFN  +                
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSL--------NWNFNKEL---------------- 308

Query: 315 SNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI 374
            + +       L N   +  L L      G +P    QL ++  +    +  T       
Sbjct: 309 -DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 375 NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN-----LPPFKSCKSIS 429
           ++    +      +                L         I  N     +          
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 430 VIESHMNNLSGTIPESVSNCVELERIDLANNKL-------------------IGSIPEVL 470
               ++ N    I +++    +L+ I  AN+                       +     
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 471 ARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVL 520
           + L  L  ++L +     Q+P        L  LN++ N    +       
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  248 bits (636), Expect = 2e-72
 Identities = 88/508 (17%), Positives = 175/508 (34%), Gaps = 16/508 (3%)

Query: 19  ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
            L  L+L+             +   L +L ++ N         +   + L  L       
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
           S      +   + L+ L L  ++ S     +    + L+ L    N ++     ++  L+
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 139 TVTHMEIGYNFYQ-GNIPWQLGNMSEVQYLDIAGANLSGSIPKELSN--LTKLESLFLFR 195
             T++ +  N      I     + +  Q L+  G      I K L N  +  L       
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 196 NQLAGQVPWEFS--RVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES 253
                  P  F      +++S++L  +        +F     L+ L L    +S  +P  
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

Query: 254 LVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG-GVLFKLI 312
           LV L +L+ L +  N F      +      L  + +  N     +          L +L 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 313 LFSNNFTGS--LSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG-G 369
           L  ++   S   +  L N S L  L L  N         F + P +  +DL+        
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 370 IPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN----LPPFKSC 425
             +       L+  N+S++  L          LP+LQ+ +    +            ++ 
Sbjct: 417 AQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 426 KSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNS 485
             + ++     +LS     + ++   +  +DL++N+L  S  E L+ L  +  L+L+ N 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534

Query: 486 LSGQIPAKFGSCSSLTVLNVSFNDISGS 513
           +S  +P+     S    +N+  N +  +
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  232 bits (594), Expect = 1e-66
 Identities = 94/517 (18%), Positives = 167/517 (32%), Gaps = 22/517 (4%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
             N    L  S N            L +L  LD++R           QS   L  L   +
Sbjct: 31  LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           N         +S  + LK L    +  S        + K+LE L+L  N ++     +  
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSE--VQYLDIAGANLSGSIPKELSNLTKLESLFL 193
             + +  ++   N         + ++ +     L++ G N    I     +    +SL  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-NDIAGIEPGAFDSAVFQSLNF 209

Query: 194 FRNQLAGQVPWE--FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRL--LSLMYNEMSGT 249
              Q    +      S + +L      D       P  F  L  + +  ++L  +     
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 250 VPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG-GVL 308
              +      L+ L +   + S  LP  L   S L+ + +S N F   +     S    L
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSL 327

Query: 309 FKLILFSNNFTGSLSP-SLSNCSSLVRLRLEDN--SFSGEIPLKFSQLPDINYIDLSRNG 365
             L +  N     L    L N  +L  L L  +    S    L+   L  +  ++LS N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 366 FTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWS-LPSLQNFSASACNITGNLPP--F 422
                     +  +LE  +++   +L        +  L  L+  + S   +        F
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLF 445

Query: 423 KSCKSISVIESHMNNLSGTI---PESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVL 479
               ++  +    N+          S+     LE + L+   L          L ++  +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 480 DLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS 516
           DLSHN L+            +  LN++ N IS  +PS
Sbjct: 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  219 bits (560), Expect = 7e-62
 Identities = 88/504 (17%), Positives = 144/504 (28%), Gaps = 63/504 (12%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 82
            N  +   + + P  + N  S   L+ S N            L NL  LD          
Sbjct: 17  YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 83  PAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTH 142
                    L  L L  +       +     K+L+ L                       
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT------------------ 115

Query: 143 MEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV 202
                                          +S      L N   LESL+L  N ++   
Sbjct: 116 ------------------------------GISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 203 PWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS-GTVPESLVQLPSLE 261
             +      LK LD  +N +     E  + L+    LSL  N      +          +
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 262 ILFIWNNYFSGSLPENLGRNS--KLRWVDVSTNNFNGSIPPDICSGGV---LFKLILFSN 316
            L          + + L  ++   L        +    I P +  G     +  + L  +
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKH 264

Query: 317 NFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQ 376
            F    S +    S L  L L     S E+P     L  +  + LS N F        + 
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 377 ASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG---NLPPFKSCKSISVIES 433
              L + ++  N K   +      +L +L+    S  +I          ++   +  +  
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 434 HMNNLSGTIPESVSNCVELERIDLANNKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPA 492
             N       E+   C +LE +DLA  +L     +     L +L VL+LSH+ L      
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 493 KFGSCSSLTVLNVSFNDISGSIPS 516
            F    +L  LN+  N        
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (513), Expect = 2e-55
 Identities = 74/409 (18%), Positives = 134/409 (32%), Gaps = 16/409 (3%)

Query: 119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI 178
            +     LN +IP  L    +   +E  +N            +  + +LD+    +    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 179 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRL 238
                +  +L++L L  N L        S    LK L      +S        + K L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 239 LSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVS-TNNFNGS 297
           L L  N +S            L++L   NN       E++    +   + ++   N    
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 298 IPPDICSGGVLFKLILFSNNFTGSLSPSLSNCS--SLVRLRLEDNSFSGEIPLKFSQLPD 355
           I P      V   L          +   L N +  SL     ED       P  F  L +
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 356 IN--YIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASAC 413
           ++   I+L ++ F        +  S L+  +++    L   +P+    L +L+    SA 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSE-LPSGLVGLSTLKKLVLSAN 311

Query: 414 NITGNLPP--FKSCKSISVIESHMNNLSGTI-PESVSNCVELERIDLANNKL--IGSIPE 468
                L      +  S++ +    N     +    + N   L  +DL+++ +        
Sbjct: 312 KFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 469 VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
            L  L  L  L+LS+N         F  C  L +L+++F  +       
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (437), Expect = 2e-45
 Identities = 71/344 (20%), Positives = 118/344 (34%), Gaps = 13/344 (3%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFN---LTSLISLDISRNNFSGHFPGGIQSLRNLLVLDA 73
              L                 +F      S+ S+++ ++ F             L  LD 
Sbjct: 227 IQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 74  FSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
            +   S  +P+ +  L  LK L L+ + F         +F SL  L + GN    ++   
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 134 -LGMLKTVTHMEIGYNF--YQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLES 190
            L  L+ +  +++ ++          QL N+S +Q L+++         +      +LE 
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 191 LFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGT 249
           L L   +L  +     F  +  LK L+LS + L     + F  L  L+ L+L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 250 V---PESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGG 306
                 SL  L  LEIL +     S            +  VD+S N    S   +  S  
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHL 523

Query: 307 VLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKF 350
               L L SN+ +  L   L   S    + L  N         +
Sbjct: 524 KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  167 bits (425), Expect = 8e-44
 Identities = 72/390 (18%), Positives = 140/390 (35%), Gaps = 49/390 (12%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFN--LTSLISLDISRN--------NFSGHFPGGIQSLR 66
                 LN             + N  + SL                 F G          
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL------CEM 254

Query: 67  NLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLL 126
           ++  ++   + F             L+ L+L  ++ S  +PS      +L+ L L+ N  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKF 313

Query: 127 NDQIPAELGMLKTVTHMEIGYNFYQGNI-PWQLGNMSEVQYLDIAGANL--SGSIPKELS 183
            +          ++TH+ I  N  +  +    L N+  ++ LD++  ++  S     +L 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 184 NLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES-FADLKNLRLLSLM 242
           NL+ L+SL L  N+        F     L+ LDL+  RL     +S F +L  L++L+L 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 243 YNEMSGTVPESLVQLPSLEILFIWNNYFSG---SLPENLGRNSKLRWVDVSTNNFNGSIP 299
           ++ +  +  +    LP+L+ L +  N+F         +L    +L  + +S  + + SI 
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SID 492

Query: 300 PDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYI 359
                                      ++   +  + L  N  +       S L  I Y+
Sbjct: 493 QHA-----------------------FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528

Query: 360 DLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
           +L+ N  +  +P+ +   S+    N+  NP
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  147 bits (372), Expect = 4e-37
 Identities = 55/333 (16%), Positives = 99/333 (29%), Gaps = 31/333 (9%)

Query: 213 KSLDLSD---------------------NRLSGPIPESFADLKNLRLLSLMYNEMSGTVP 251
           K+ +  +                     N L      +F+ L NL  L L   ++     
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 252 ESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKL 311
           ++      L+ L +  N         L     L+ +       +      + +   L  L
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 312 ILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDIN--YIDLSRNGFTGG 369
            L SN+ +    P       L  L  ++N+         S L       ++L+ N    G
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-G 193

Query: 370 IPTDINQASKLEYFNVSNNPKLGGMIPAQTWS-LPSLQNFSASACNITGNLP-PFKSCKS 427
           I      ++  +  N      L  +      S + SL   +    +     P  F+    
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 428 ISVIE---SHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHN 484
           +SV        +        +      L+ +DL     +  +P  L  L  L  L LS N
Sbjct: 254 MSVESINLQK-HYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSAN 311

Query: 485 SLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
                      +  SLT L++  N     + +G
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (259), Expect = 6e-23
 Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 27/254 (10%)

Query: 20  LVDLNLSHN--SFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
           L +L+LSH+    S    +++ NL+ L SL++S N          +    L +LD     
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 78  FSGSVP-AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
                  +    L  LKVLNL+ S         F    +L+ L+L GN        +   
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 137 LKTVTHME---IGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFL 193
           L+T+  +E   + +            ++  + ++D++   L+ S  + LS+L  +  L L
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNL 530

Query: 194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRLS--------------------GPIPESFADL 233
             N ++  +P     ++  ++++L  N L                             + 
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENP 590

Query: 234 KNLRLLSLMYNEMS 247
             LR + L    +S
Sbjct: 591 PLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  223 bits (570), Expect = 3e-63
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 29/519 (5%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
            +   +++LS N           N + L  LD+SR             L +L  L    N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELG 135
                 P   S L  L+ L    +  +       G   +L+ L++A N ++  ++PA   
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSE----VQYLDIAGANLSGSIPKELSNLTKLESL 191
            L  + H+++ YN+ Q      L  + E       LD++  N    I  +     KL  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQGIKLHEL 209

Query: 192 FLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSG------PIPESFADLKNLRL--LSLM 242
            L  N  +  +       +  L    L               P     L ++ +    L 
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 243 YNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDI 302
           Y             L ++  + +          E++ ++ K + + +         P   
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPTLD 326

Query: 303 CSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDN--SFSGEIPLKFSQLPDINYID 360
                L  L L  N   GS+S       SL  L L  N  SFSG           + ++D
Sbjct: 327 LPF--LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTW-SLPSLQNFSASACNITGNL 419
           LS NG    +  +     +L++ +  ++  L  +     + SL  L     S  N   + 
Sbjct: 383 LSFNGAII-MSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 420 PP-FKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSIPEVLARLPVLG 477
              F    S++ ++   N+       +V +N   L  +DL+  +L      V   L  L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 478 VLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS 516
           +L++SHN+L     + +    SL+ L+ SFN I  S   
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  217 bits (555), Expect = 3e-61
 Identities = 99/514 (19%), Positives = 174/514 (33%), Gaps = 29/514 (5%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           F+EL  L+LS              L  L +L ++ N      PG    L +L  L A   
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
             +      I QL  LK LN+A ++     +P+ F +  +L  + L+ N +      +L 
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 136 MLKTVTHMEIGYNFYQGN----IPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLES 190
            L+    + +  +    N    I  Q     ++  L + G   S +I K  L NL  L  
Sbjct: 175 FLRENPQVNLSLDM-SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 191 LFLFRNQLAGQVPWEFSRVTTLKSL--------DLSDNRLSGPIPESFADLKNLRLLSLM 242
             L   +   +   E    + ++ L         L+           F  L N+  +SL 
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 243 YNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDI 302
              +     E + +    + L I           +L     L+ + ++ N   GSI    
Sbjct: 294 GVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK--GSISFKK 346

Query: 303 CSGGVLFKLILFSNNFT--GSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
            +   L  L L  N  +  G  S S    +SL  L L  N     +   F  L ++ ++D
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLD 405

Query: 361 LSRNGFTGGIPTD-INQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNL 419
              +               KL Y ++S               L SL     +  +   N 
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 420 PP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLG 477
               F +  +++ ++     L             L+ +++++N L+        +L  L 
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 478 VLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
            LD S N +            SL   N++ N ++
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  193 bits (493), Expect = 8e-53
 Identities = 81/504 (16%), Positives = 148/504 (29%), Gaps = 61/504 (12%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 82
                   S + P +I   +S  ++D+S N           +   L  LD          
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 83  PAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTH 142
                 L HL  L L G+      P  F    SLE L      L       +G L T+  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 143 MEIGYNFYQG-NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL----ESLFLFRNQ 197
           + + +NF     +P    N++ + ++D++   +      +L  L +      SL +  N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           +   +  +  +   L  L L  N  S  I +    +L  L +  L+  E        + +
Sbjct: 193 I-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSN 316
              +E L                 +  +    ++  N              +  + L   
Sbjct: 252 PSIMEGL----------------CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 317 NFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQ 376
           +        +        L +       + P     LP +  + L+ N  +  I      
Sbjct: 296 SIKYL--EDVPKHFKWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNKGS--ISFKKVA 348

Query: 377 ASKLEYFNVSNNPKLGGMIPAQTWSL--PSLQNFSASACNITGNLPPFKSCKSISVIESH 434
              L Y ++S N  L          L   SL++   S                       
Sbjct: 349 LPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAI------------------ 389

Query: 435 MNNLSGTIPESVSNCVELERIDLANNKLIGSIP-EVLARLPVLGVLDLSHNSLSGQIPAK 493
                  +  +     EL+ +D  ++ L           L  L  LD+S+ +        
Sbjct: 390 ------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 494 FGSCSSLTVLNVSFNDISGSIPSG 517
           F   +SL  L ++ N    +  S 
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  171 bits (435), Expect = 4e-45
 Identities = 73/392 (18%), Positives = 130/392 (33%), Gaps = 22/392 (5%)

Query: 11  KPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGH-FPGGIQSLRNLL 69
           + LR      + L++S N        + F    L  L +  N  S +     +Q+L  L 
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 70  VLDAFSNSFSGSVPAEISQ------LEHLKVLNLAGSY--FSGPIPSQFGSFKSLEFLHL 121
           V       F      EI +      L  + +     +Y         +F    ++  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 181
           AG  +   +       K    + I     +      L     ++ L +      GSI  +
Sbjct: 293 AGVSIK-YLEDVPKHFK-WQSLSIIRCQLKQFPTLDLPF---LKSLTL--TMNKGSISFK 345

Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTT--LKSLDLSDNRLSGPIPESFADLKNLRLL 239
              L  L  L L RN L+      +S + T  L+ LDLS N     +  +F  L+ L+ L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404

Query: 240 SLMYNEMSGTVPES-LVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSI 298
              ++ +      S  + L  L  L I                + L  + ++ N+F  + 
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 299 PPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDIN 357
             ++ +    L  L L                  L  L +  N+        ++QL  ++
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 358 YIDLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
            +D S N          +    L +FN++NN 
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  181 bits (461), Expect = 1e-49
 Identities = 95/473 (20%), Positives = 177/473 (37%), Gaps = 36/473 (7%)

Query: 19  ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           E +   L   + +    V   +L  + +L   R         G++ L NL  ++  +N  
Sbjct: 25  EKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQL 80

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
           +   P  +  L  L  + +  +  +   P    +  +L  L L  N + D  P  L  L 
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 139 TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL 198
            +  +E+  N         L  ++ +Q L   G  ++   P  L+NLT LE L +  N++
Sbjct: 135 NLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKV 189

Query: 199 AGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP 258
           +       +++T L+SL  ++N++S   P     L NL  LSL  N++      +L  L 
Sbjct: 190 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLT 243

Query: 259 SLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNF 318
           +L  L + NN  S      L   +KL  + +  N  +   P    +   L  L L  N  
Sbjct: 244 NLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQL 299

Query: 319 TGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQAS 378
                  +SN  +L  L L  N+ S   P+  S L  +  +    N  +    + +   +
Sbjct: 300 ED--ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVSD--VSSLANLT 353

Query: 379 KLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNL 438
            + + +  +N ++  + P    +L  +     +    T     +K+  SI     ++   
Sbjct: 354 NINWLSAGHN-QISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

Query: 439 SGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIP 491
               P ++S+       D+  N L     EV         +     + SG + 
Sbjct: 411 L-IAPATISDGGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  180 bits (458), Expect = 4e-49
 Identities = 89/472 (18%), Positives = 168/472 (35%), Gaps = 59/472 (12%)

Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
            L   +   + + N +         L  +  L A            +  L +L  +N + 
Sbjct: 22  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 77

Query: 100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG 159
           +  +   P    +   L  + +  N + D  P                          L 
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP--------------------------LA 109

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
           N++ +  L +    ++   P  L NLT L  L L  N ++       S +T+L+ L    
Sbjct: 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG- 164

Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG 279
           N+++   P   A+L  L  L +  N++S      L +L +LE L   NN  S      LG
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI--TPLG 218

Query: 280 RNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLED 339
             + L  + ++ N         + S   L  L L +N  +      LS  + L  L+L  
Sbjct: 219 ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGA 274

Query: 340 NSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQT 399
           N  S   PL  + L  +  ++L+ N       + I+    L Y  +  N  +  + P   
Sbjct: 275 NQISNISPL--AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFN-NISDISPVS- 328

Query: 400 WSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLAN 459
            SL  LQ        ++ ++    +  +I+ + +  N +S   P  ++N   + ++ L +
Sbjct: 329 -SLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384

Query: 460 NKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
                +     A + +   +     +L    PA      S T  ++++N  S
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  173 bits (442), Expect = 4e-47
 Identities = 91/473 (19%), Positives = 175/473 (36%), Gaps = 61/473 (12%)

Query: 43  SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYF 102
            L S  I+++           +L   +       + + +V    + L+ +  L       
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 103 SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMS 162
                       +L  ++ + N L D  P                          L N++
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTDITP--------------------------LKNLT 90

Query: 163 EVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRL 222
           ++  + +    ++   P  L+NLT L  L LF NQ+    P     +T L  L+LS N +
Sbjct: 91  KLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146

Query: 223 SGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNS 282
           S     + + L +L+ LS        T  + L  L +LE L I +N  S      L + +
Sbjct: 147 SDI--SALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSD--ISVLAKLT 199

Query: 283 KLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSF 342
            L  +  + N  +   P  I +   L +L L  N        +L++ ++L  L L +N  
Sbjct: 200 NLESLIATNNQISDITPLGILTN--LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 255

Query: 343 SGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSL 402
           S   PL  S L  +  + L  N  +    + +   + L    ++ N +L  + P    +L
Sbjct: 256 SNLAPL--SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN-QLEDISP--ISNL 308

Query: 403 PSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL 462
            +L   +    NI+ ++ P  S   +  +  + N +S     S++N   +  +   +N++
Sbjct: 309 KNLTYLTLYFNNIS-DISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI 365

Query: 463 IGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIP 515
               P  LA L  +  L L+  + +          +++++ N   N     I 
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYK---ANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  160 bits (407), Expect = 2e-42
 Identities = 79/412 (19%), Positives = 151/412 (36%), Gaps = 35/412 (8%)

Query: 111 GSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIA 170
           G   S          +N         L       +G       +     ++ +V  L   
Sbjct: 1   GPLGSATITQ--DTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQAD 54

Query: 171 GANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESF 230
              +       +  L  L  +    NQL    P     +T L  + +++N+++   P   
Sbjct: 55  RLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--L 108

Query: 231 ADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVS 290
           A+L NL  L+L  N+++    + L  L +L  L + +N  S      L   + L+ +   
Sbjct: 109 ANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG 164

Query: 291 TNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKF 350
            N      P    +   L +L + SN  +      L+  ++L  L   +N  S   PL  
Sbjct: 165 -NQVTDLKPLANLTT--LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL-- 217

Query: 351 SQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSA 410
             L +++ + L+ N         +   + L   +++NN ++  + P     L  L     
Sbjct: 218 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN-QISNLAPLS--GLTKLTELKL 272

Query: 411 SACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVL 470
            A  I+ N+ P     +++ +E + N L    P  +SN   L  + L  N +    P  +
Sbjct: 273 GANQIS-NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327

Query: 471 ARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
           + L  L  L   +N +S    +   + +++  L+   N IS   P   + R+
Sbjct: 328 SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRI 377

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  179 bits (457), Expect = 3e-48
 Identities = 103/534 (19%), Positives = 178/534 (33%), Gaps = 51/534 (9%)

Query: 24  NLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVP 83
                +F  + P  +    S  +LD+S N           S   L VLD           
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 84  AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHM 143
                L HL  L L G+         F    SL+ L      L       +G LKT+  +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 144 EIGYNFYQ-GNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLE----SLFLFRNQL 198
            + +N  Q   +P    N++ +++LD++   +      +L  L ++     SL L  N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 199 AGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEMSGT-------- 249
              +     +   L  L L +N  S  + +     L  L +  L+  E            
Sbjct: 190 N-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 250 -VPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVL 308
              E L  L   E    + +Y+   + +     + +    + +      +     + G  
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG-W 306

Query: 309 FKLIL--------------------FSNNFTGSLSPSLSNCSSLVRLRLEDN--SFSGEI 346
             L L                    F++N  G+   S  +  SL  L L  N  SF G  
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 347 PLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTW-SLPSL 405
                    + Y+DLS NG    + ++     +LE+ +  ++  L  M     + SL +L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNL 423

Query: 406 QNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKL 462
                S  +         F    S+ V++   N+        + +    L  +DL+  +L
Sbjct: 424 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 463 IGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS 516
               P     L  L VL+++ N L       F   +SL  + +  N    S P 
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (364), Expect = 3e-36
 Identities = 69/405 (17%), Positives = 134/405 (33%), Gaps = 37/405 (9%)

Query: 154 IPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLK 213
           IP  L      + LD++   L         +  +L+ L L R ++       +  ++ L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 214 SLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF-SG 272
           +L L+ N +      +F+ L +L+ L  +   ++      +  L +L+ L + +N   S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 273 SLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLIL---FSNNFTGSLSPSLSNC 329
            LPE     + L  +D+S+N        D+     +  L L    S N    + P     
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 330 SSLVRLRLEDNSFSGEIPLK-FSQLPDINYIDLSRNGFTGG-----IPTDI---NQASKL 380
             L +L L +N  S  +       L  +    L    F                     +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 381 EYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG--NLPPFKSCKSISVIESHMNNL 438
           E F ++        I      L ++ +FS  +  I    +       + + ++       
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 439 SGTIPESV----------------SNCVELERIDLANNKL--IGSIPEVLARLPVLGVLD 480
                +S+                 +   LE +DL+ N L   G   +       L  LD
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 481 LSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGS 525
           LS N +   + + F     L  L+   +++   +    V   + +
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRN 422

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (349), Expect = 3e-34
 Identities = 88/475 (18%), Positives = 161/475 (33%), Gaps = 36/475 (7%)

Query: 19  ELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
            L  L L+ N       +  F  L+SL  L     N +      I  L+ L  L+   N 
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 78  F-SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF----LHLAGNLLNDQIPA 132
             S  +P   S L +L+ L+L+ +       +       +      L L+ N +N  I  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 133 ELGMLKTVTHMEIGYNFYQGNIPWQ-LGNMSEVQYLDIAGANLSGS---IPKELSNLTKL 188
                  +  + +  NF   N+    +  ++ ++   +              + S L  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 189 ESLFLFRNQLAG------QVPWEFSRVTTLKSLDLSDNRLSGPIPESF-ADLKNLRLLSL 241
            +L +   +LA        +   F+ +T + S  L    +      S+    ++L L++ 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
            + +         ++L SL+ L   +N    +    +     L ++D+S N  +      
Sbjct: 315 KFGQFPT------LKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 302 ICSGGV--LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLK-FSQLPDINY 358
               G   L  L L  N    ++S +      L  L  + ++         F  L ++ Y
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 359 IDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWS-LPSLQNFSASACNITG 417
           +D+S            N  S LE   ++ N           ++ L +L     S C +  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 418 NLPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVL 470
            L P  F S  S+ V+    N L             L++I L  N    S P + 
Sbjct: 485 -LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (275), Expect = 4e-25
 Identities = 58/263 (22%), Positives = 96/263 (36%), Gaps = 32/263 (12%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
           +      L L +  F  QFP     L SL  L  + N     F      L +L  LD   
Sbjct: 302 YNFGWQHLELVNCKFG-QFP--TLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356

Query: 76  N--SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
           N  SF G           LK L+L+ +     + S F   + LE L    + L       
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 134 LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFL 193
           +                         ++  + YLDI+  +   +     + L+ LE L +
Sbjct: 416 V-----------------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 194 FRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE 252
             N        + F+ +  L  LDLS  +L    P +F  L +L++L++  N++      
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 253 SLVQLPSLEILFIWNNYFSGSLP 275
              +L SL+ +++  N +  S P
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (254), Expect = 2e-22
 Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 33/235 (14%)

Query: 15  IFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRN--NFSGHFPGGIQSLRNLLVLD 72
           +    L  L  + N     F     +L SL  LD+SRN  +F G          +L  LD
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 73  AFSNSFSGSVPAEISQLEHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLNDQIP 131
              N    ++ +    LE L+ L+   S        S F S ++L +L ++         
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AF 437

Query: 132 AELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLES 190
             +                          +S ++ L +AG +   +   +  + L  L  
Sbjct: 438 NGI-----------------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 191 LFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN 244
           L L + QL  Q+    F+ +++L+ L+++ N+L       F  L +L+ + L  N
Sbjct: 475 LDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 4e-16
 Identities = 45/240 (18%), Positives = 73/240 (30%), Gaps = 31/240 (12%)

Query: 287 VDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEI 346
                 NF   IP ++        L L  N      S S  +   L  L L         
Sbjct: 12  YQCMELNFY-KIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 347 PLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQ 406
              +  L  ++ + L+ N          +  S L+         L  +       L +L+
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLK 127

Query: 407 NFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSI 466
             + +   I                       S  +PE  SN   LE +DL++NK+    
Sbjct: 128 ELNVAHNLIQ----------------------SFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 467 PEVLARLPVLGV----LDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
              L  L  + +    LDLS N ++  I         L  L +  N  S ++    +  L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  168 bits (429), Expect = 2e-46
 Identities = 79/370 (21%), Positives = 147/370 (39%), Gaps = 27/370 (7%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
              L       +  FP    +L   I   + + + +       + L ++  L       +
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 80  GSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKT 139
            S+   I  L +L+ LNL G+  +   P    +   L  L++  N + D   + L  L  
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTN 111

Query: 140 VTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA 199
           +  + +  +      P  L N++++  L++   N + S    LSN+T L  L +  +++ 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGA-NHNLSDLSPLSNMTGLNYLTVTESKVK 168

Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS 259
              P   + +T L SL L+ N++    P   A L +L   +   N+++      +  +  
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTR 222

Query: 260 LEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFT 319
           L  L I NN  +      L   S+L W+++ TN  +  I   +     L  L + SN  +
Sbjct: 223 LNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQIS 278

Query: 320 GSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASK 379
                 L+N S L  L L +N    E       L ++  + LS+N  T   P  +   SK
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334

Query: 380 LEYFNVSNNP 389
           ++  + +N  
Sbjct: 335 MDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  165 bits (420), Expect = 3e-45
 Identities = 69/354 (19%), Positives = 139/354 (39%), Gaps = 25/354 (7%)

Query: 158 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 217
             +++E     +  A+++  +      L  +  L +   ++A         +T L+ L+L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNL 73

Query: 218 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN 277
           + N+++   P   ++L  L  L +  N++  T   +L  L +L  L++  +  S      
Sbjct: 74  NGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISP 127

Query: 278 LGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRL 337
           L   +K+  +++  N+ N S    + +   L  L +  +         ++N + L  L L
Sbjct: 128 LANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSL 184

Query: 338 EDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPA 397
             N      PL  + L  ++Y     N  T   P  +   ++L    + NN K+  + P 
Sbjct: 185 NYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN-KITDLSPL 239

Query: 398 QTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDL 457
              +L  L         I+ ++   K    + ++    N +S      ++N  +L  + L
Sbjct: 240 A--NLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 458 ANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
            NN+L     EV+  L  L  L LS N ++   P    S S +   + +   I 
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 2e-35
 Identities = 67/325 (20%), Positives = 129/325 (39%), Gaps = 45/325 (13%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
           +   L  LNL+ N  +   P  + NL  L +L I  N  +      +Q+L NL  L    
Sbjct: 64  YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNE 119

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           ++ S   P  ++ L  +  LNL  ++      S   +   L +L +  + + D  P  + 
Sbjct: 120 DNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IA 174

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
            L  +  + + YN  +   P  L +++ + Y       ++   P  ++N+T+L SL +  
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           N++    P   + ++ L  L++  N++S     +  DL  L++L++  N++S      L 
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLN 284

Query: 256 QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFS 315
            L  L  LF+ NN       E +G  + L  + +S N+     P                
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---------------- 328

Query: 316 NNFTGSLSPSLSNCSSLVRLRLEDN 340
                     L++ S +      + 
Sbjct: 329 ----------LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 2e-35
 Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 19/277 (6%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
             +L +L +  N  +      + NLT+L  L ++ +N S      + +L  +  L+  +N
Sbjct: 87  LVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGAN 142

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
               S  + +S +  L  L +  S      P    +   L  L L  N + D  P  L  
Sbjct: 143 HNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LAS 197

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L ++ +     N      P  + NM+ +  L I    ++   P  L+NL++L  L +  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           Q++         +T LK L++  N++S        +L  L  L L  N++     E +  
Sbjct: 254 QISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNN 293
           L +L  LF+  N+ +      L   SK+   D +   
Sbjct: 310 LTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (308), Expect = 2e-30
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 71/346 (20%)

Query: 167 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI 226
           L    A ++   P   ++L +     L +  +   V      + ++  L ++  +++   
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI- 59

Query: 227 PESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRW 286
            +    L NL  L+L  N+++      L  L  L  L+I  N  +               
Sbjct: 60  -QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--------------- 101

Query: 287 VDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEI 346
                      I                           L N ++L  L L +++ S   
Sbjct: 102 ----------DISA-------------------------LQNLTNLRELYLNEDNISDIS 126

Query: 347 PLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQ 406
           PL  + L  +  ++L  N       + ++  + L Y  V+ + K+  + P    +L  L 
Sbjct: 127 PL--ANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLY 180

Query: 407 NFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSI 466
           + S +   I  ++ P  S  S+    +++N ++   P  V+N   L  + + NNK+    
Sbjct: 181 SLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 467 PEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISG 512
           P  LA L  L  L++  N +S  I A     + L +LNV  N IS 
Sbjct: 238 P--LANLSQLTWLEIGTNQISD-INA-VKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.7 bits (239), Expect = 2e-21
 Identities = 44/304 (14%), Positives = 94/304 (30%), Gaps = 67/304 (22%)

Query: 212 LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 271
             +L      ++   P   ADL       L    ++  V +   +L S+  L +     +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 272 GSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSS 331
               + +   + L +++++ N      P                          LSN   
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--------------------------LSNLVK 89

Query: 332 LVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKL 391
           L  L +  N  +         L ++  + L+ +  +   P  +   +K+   N+  N   
Sbjct: 90  LTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN--- 142

Query: 392 GGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVE 451
                                 +   +L P  +   ++ +    + +    P  ++N  +
Sbjct: 143 ----------------------HNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTD 178

Query: 452 LERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
           L  + L  N++    P  LA L  L       N ++   P    + + L  L +  N I+
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234

Query: 512 GSIP 515
              P
Sbjct: 235 DLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.4 bits (220), Expect = 6e-19
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 34/229 (14%)

Query: 315 SNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI 374
                  + P  ++ +  +R  L+  S +  +     +L  I  + ++           I
Sbjct: 8   LPAPINQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGI 62

Query: 375 NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESH 434
              + LEY N++ N ++  + P    +L  L N       IT ++   ++  ++  +  +
Sbjct: 63  EYLTNLEYLNLNGN-QITDISPLS--NLVKLTNLYIGTNKIT-DISALQNLTNLRELYLN 118

Query: 435 MNNLSG---------------------TIPESVSNCVELERIDLANNKLIGSIPEVLARL 473
            +N+S                      +    +SN   L  + +  +K+    P  +A L
Sbjct: 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANL 176

Query: 474 PVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
             L  L L++N +    P    S +SL       N I+   P   + RL
Sbjct: 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRL 223

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  167 bits (426), Expect = 3e-46
 Identities = 81/286 (28%), Positives = 129/286 (45%), Gaps = 70/286 (24%)

Query: 626 KAVLPTGITVSVKKI-EWGATRIKIVSEFITR---IGTVRHKNLIRLLGFCYNRHQAYLL 681
           K  L  G  V+VK++ E      +   +F T    I    H+NL+RL GFC    +  L+
Sbjct: 48  KGRLADGTLVAVKRLKEERTQGGE--LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV 105

Query: 682 YDYLPNGNLSEKIRTKR------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
           Y Y+ NG+++  +R +       DW  + +I LG ARGL +LH  C P I H D+KA+NI
Sbjct: 106 YPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANI 165

Query: 736 VFDENMEPHLAEFGF-KYL--------TQLADGSF----PAKIAW---TESGEFYNAMKE 779
           + DE  E  + +FG  K +        T +  G+     P  ++    +E          
Sbjct: 166 LLDEEFEAVVGDFGLAKLMDYKDTHVTTAVR-GTIGHIAPEYLSTGKSSEKT-------- 216

Query: 780 EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-------------------IDGLLGEM 820
               DV+G+G ++LE++T  R  +      +                     +D  L   
Sbjct: 217 ----DVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGN 272

Query: 821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG 866
           Y + EV          + ++ VALLCT+S+P +RP M E +++L G
Sbjct: 273 YKDEEV----------EQLIQVALLCTQSSPMERPKMSEVVRMLEG 308

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (440), Expect = 7e-45
 Identities = 92/523 (17%), Positives = 180/523 (34%), Gaps = 48/523 (9%)

Query: 23  LNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 81
                 + +     ++   L +   L +S N            L  L +L+  S     +
Sbjct: 9   AFYRFCNLT-----QVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 82  VPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQI--PAELGMLK 138
           +  E    L +L++L+L  S      P  F     L  L L    L+D +        LK
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 139 TVTHMEIGYNFYQG-NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLT--KLESLFLFR 195
            +T +++  N  +   +    G ++ ++ +D +   +      EL  L    L    L  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 196 NQLAGQVPWEFS------RVTTLKSLDLSDNRLSGPIPESFAD------------LKNLR 237
           N L  +V  ++       R   L+ LD+S N  +  I  +F++              ++ 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 238 LLSLMYNEMSGTVPESLVQLP--SLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN 295
                ++ +      +   L   S+  L + + +              L+ ++++ N  N
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 296 GSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLP 354
             I  +   G   L  L L  N      S +      +  + L+ N  +      F  L 
Sbjct: 304 -KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 355 DINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACN 414
            +  +DL  N  T      I+    +    +S N  +   +P    +   + + S +   
Sbjct: 363 KLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT--LPKINLTANLI-HLSENRLE 414

Query: 415 ITGNLPPFKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSI-----PE 468
               L        + ++  + N  S    +   S    LE++ L  N L  +       +
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 469 VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
           V   L  L VL L+HN L+   P  F   ++L  L+++ N ++
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (439), Expect = 1e-44
 Identities = 114/612 (18%), Positives = 202/612 (33%), Gaps = 61/612 (9%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
             +L  L L           E F NL +L  LD+  +      P   Q L +L  L  + 
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 76  NSFSGSV--PAEISQLEHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLNDQIPA 132
              S +V        L+ L  L+L+ +      +   FG   SL+ +  + N +      
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 133 ELGML--KTVTHMEIGYNFYQGNIPWQLGNMSEV------QYLDIAGANLSGSIPKELSN 184
           EL  L  KT++   +  N     +    G           + LD++G   +  I    SN
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 185 ------------LTKLESLFLFRNQLAGQVPWEFS--RVTTLKSLDLSDNRLSGPIPESF 230
                          +       + +       F+    ++++ LDLS   +       F
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 231 ADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVS 290
             LK+L++L+L YN+++    E+   L +L++L +  N        N     K+ ++D+ 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 291 TNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLK 349
            N+    I          L  L L  N  T     ++    S+  + L  N       + 
Sbjct: 347 KNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 350 FSQLPDINYIDLSRNGFTG-GIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNF 408
            +     N I LS N      I   + +   L+   ++ N              PSL+  
Sbjct: 401 LTA----NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 409 SASACNITGNLPP------FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL 462
                 +            F+    + V+  + N L+   P   S+   L  + L +N+L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 463 IGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
                  L     L +LD+S N L    P  F    SL+VL+++ N           +  
Sbjct: 517 TVLSHNDL--PANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINW 571

Query: 523 MGSSAY-----------AGNPKLCGAPLQPCHASVAILGKGTGKLKF-VLLLCAGIVMFI 570
           +  +                    G  L           +    LKF + ++C   +   
Sbjct: 572 LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLF 631

Query: 571 AAALLGIFFFRR 582
              +L +  FR 
Sbjct: 632 LMTILTVTKFRG 643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.0 bits (200), Expect = 1e-15
 Identities = 53/296 (17%), Positives = 93/296 (31%), Gaps = 35/296 (11%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
           F  +L  L+L  N+ +      I  + S+  + +S N         +       ++    
Sbjct: 360 FLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSE 410

Query: 76  NSFSG-SVPAEISQLEHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
           N      +   + ++ HL++L L  + FS            SLE L L  N+L      E
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

Query: 134 LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFL 193
           L                          +S +Q L +    L+   P   S+LT L  L L
Sbjct: 471 LC-------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511

Query: 194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES 253
             N+L      +      L+ LD+S N+L  P P+ F  L  L +    +          
Sbjct: 512 NSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFI 569

Query: 254 LVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLF 309
                +   +           P++    S +    +ST   +           +  
Sbjct: 570 NWLNHTNVTIAGPPADIYCVYPDSF---SGVSLFSLSTEGCDEEEVLKSLKFSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 8e-09
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIGSI-PEVLARLPVLGVLDLSHNSLSGQIPAK- 493
           N +      S     +L+ ++L +     +I  E    LP L +LDL  + +   +    
Sbjct: 34  NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDA 92

Query: 494 FGSCSSLTVLNVSFNDISGSIPSGKVLRLMGS 525
           F     L  L + F  +S ++      R + +
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  164 bits (418), Expect = 3e-43
 Identities = 79/487 (16%), Positives = 164/487 (33%), Gaps = 27/487 (5%)

Query: 39  FNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA 98
            +  +    D    +F+   P G+     +  LD   N  +     ++    +L+VL L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 99  GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG-NIPWQ 157
            S  +      F S  SLE L L+ N L+    +  G L ++ ++ +  N YQ   +   
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 158 LGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLD 216
             N++ +Q L I        I +   + LT L  L +    L          +  +  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 217 LSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPE 276
           L  +  +  +      L ++R L L    ++      L        +       S    E
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 277 NLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR 336
           +     KL    +  +              +        +              ++ RL 
Sbjct: 239 SFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 337 LEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP--KLGGM 394
           +       ++   +S L  +  I +  +       +       LE+ ++S N   +    
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 395 IPAQTWSLPSLQNFSASACNITGNLP----PFKSCKSISVIESHMNNLSGTIPESVSNCV 450
             A   + PSLQ    S  ++  ++        + K+++ ++   N     +P+S     
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410

Query: 451 ELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDI 510
           ++  ++L++  +   +   +     L VLD+S+N+L             L  L +S N +
Sbjct: 411 KMRFLNLSSTGI-RVVKTCI--PQTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNKL 463

Query: 511 SGSIPSG 517
             ++P  
Sbjct: 464 K-TLPDA 469

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  162 bits (412), Expect = 1e-42
 Identities = 96/508 (18%), Positives = 187/508 (36%), Gaps = 39/508 (7%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 82
            +    SF+   P  +    ++ SLD+S N  +    G +++  NL VL   S+  + ++
Sbjct: 10  CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 83  PAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTV 140
             +    L  L+ L+L+ ++ S    S FG   SL++L+L GN      + +    L  +
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 141 THMEIGYNFYQGNIPWQ-LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA 199
             + IG       I       ++ +  L+I   +L     + L ++  +  L L  ++ A
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS 259
             +      +++++ L+L D  L+          +    +  +    S    ES  +L  
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 260 LEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFT 319
           L    +  +       ++   N    +    ++  +     +  +   + +L +      
Sbjct: 246 LLRYILELSEVEF---DDCTLNGLGDFNPSESDVVSELGKVETVT---IRRLHIPQFYLF 299

Query: 320 GSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGI---PTDINQ 376
             LS   S    + R+ +E++            L  + ++DLS N               
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 377 ASKLEYFNVSNN-----PKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVI 431
              L+   +S N      K G +      +L +L +   S           +  + +  +
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEI----LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415

Query: 432 ESHMNNLSGTIPESVSNCV--ELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQ 489
                NLS T    V  C+   LE +D++NN L  S       LP L  L +S N L   
Sbjct: 416 -----NLSSTGIRVVKTCIPQTLEVLDVSNNNL-DSFS---LFLPRLQELYISRNKLK-T 465

Query: 490 IPAKFGSCSSLTVLNVSFNDISGSIPSG 517
           +P        L V+ +S N +  S+P G
Sbjct: 466 LPD-ASLFPVLLVMKISRNQLK-SVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (384), Expect = 6e-39
 Identities = 85/477 (17%), Positives = 156/477 (32%), Gaps = 29/477 (6%)

Query: 20  LVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           L  L L  +  +     + F +L SL  LD+S N+ S         L +L  L+   N +
Sbjct: 52  LQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 79  SG-SVPAEISQLEHLKVLNLAGSYFSGPIPSQ-FGSFKSLEFLHLAGNLLNDQIPAELGM 136
               V +    L +L+ L +        I    F    SL  L +    L +     L  
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           ++ + H+ +  +     +      +S V+YL++   NL+      L        +     
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           + +      F+ +  L    L  + +       F D     L     +E         V+
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSN 316
             ++  L I   Y    L        K++ + V  +     +P          + +  S 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 317 NFTGSLSP----SLSNCSSLVRLRLEDNSFS--GEIPLKFSQLPDINYIDLSRNGFTGGI 370
           N                 SL  L L  N      +       L ++  +D+SRN F   +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-M 402

Query: 371 PTDINQASKLEYFNVSNNPKLGGMIPAQTWSLP-SLQNFSASACNITGNLPPFKSCKSIS 429
           P       K+ + N+S+       I      +P +L+    S  N+          + + 
Sbjct: 403 PDSCQWPEKMRFLNLSST-----GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457

Query: 430 VIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSL 486
           +  S  N L  T+P++      L  + ++ N+L      +  RL  L  + L  N  
Sbjct: 458 I--SR-NKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (285), Expect = 2e-26
 Identities = 57/363 (15%), Positives = 117/363 (32%), Gaps = 41/363 (11%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
             ++  L L  +  +    +    L+S+  L++   N +      +        +   + 
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 77  SFSG----------SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLL 126
             S            +   I +L  ++  +   +      PS+      L  +       
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE------ 284

Query: 127 NDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 186
                       T+  + I   +   ++      + +V+ + +  + +         +L 
Sbjct: 285 ----------TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334

Query: 187 KLESLFLFRNQLAGQVPWE---FSRVTTLKSLDLSDNRLS--GPIPESFADLKNLRLLSL 241
            LE L L  N +  +            +L++L LS N L       E    LKNL  L +
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
             N     +P+S      +  L + +      +   + +   L  +DVS NN + S    
Sbjct: 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNNLD-SFSLF 449

Query: 302 ICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDL 361
           +     L +L +  N    +L P  S    L+ +++  N         F +L  +  I L
Sbjct: 450 LPR---LQELYISRNKLK-TL-PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

Query: 362 SRN 364
             N
Sbjct: 505 HTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (250), Expect = 4e-22
 Identities = 65/327 (19%), Positives = 113/327 (34%), Gaps = 30/327 (9%)

Query: 23  LNLSHNSFSG--QFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS----- 75
             L+  SF+   +    I  L+ +   D + N      P     +  L  ++  +     
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 76  ---NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQI-- 130
                    +    S LE +K + +  S       S     KSLEFL L+ NL+ ++   
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 131 -PAELGMLKTVTHMEIGYNFYQ--GNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTK 187
             A  G   ++  + +  N  +        L  +  +  LDI+       +P       K
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 247
           +  L L    +   V        TL+ LD+S+N L          L  L+ L +  N++ 
Sbjct: 412 MRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK 464

Query: 248 GTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV 307
            T+P++    P L ++ I  N           R + L+ + + TN ++ S     C    
Sbjct: 465 -TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-----CPRID 517

Query: 308 LFKLILFSNNFTGSLSPSLSNCSSLVR 334
                L  N+     S   S     VR
Sbjct: 518 YLSRWLNKNSQKEQGSAKCSGSGKPVR 544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.9 bits (239), Expect = 1e-20
 Identities = 51/350 (14%), Positives = 113/350 (32%), Gaps = 59/350 (16%)

Query: 17  FNELVDLNLSHNS--------FSGQFPVEIFNLTSLISLDISRNNFSG--HFPGGIQSLR 66
            + +  L L   +                     +     ++  +F+        I  L 
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 67  NLLVLDAFSNSFSGSVPAEISQLEH--------LKVLNLAGSYFSGPIPSQFGSFKSLEF 118
            +   D   N      P+E   +          ++ L++   Y    + + +   + ++ 
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAG---ANLS 175
           + +  + +   +P                            ++  +++LD++        
Sbjct: 315 ITVENSKVF-LVPCSF-----------------------SQHLKSLEFLDLSENLMVEEY 350

Query: 176 GSIPKELSNLTKLESLFLFRNQLA--GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADL 233
                       L++L L +N L    +       +  L SLD+S N    P+P+S    
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 234 KNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNN 293
           + +R L+L    +   V   +    +LE+L + NN    S    L    +L+ + +S N 
Sbjct: 410 EKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNK 462

Query: 294 FNGSIPPDICSGGVLFKLILFSNNFTGSLSPS-LSNCSSLVRLRLEDNSF 342
              ++P       VL  + +  N    S+        +SL ++ L  N +
Sbjct: 463 LK-TLPDASLF-PVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  156 bits (396), Expect = 5e-41
 Identities = 91/513 (17%), Positives = 170/513 (33%), Gaps = 77/513 (15%)

Query: 12  PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVL 71
           P  +    L +     ++ + + PVE  N+ S      + + +  + P G    R + V 
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 72  DAFSNSFSG------------SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFL 119
                                S+P     LE    L  + +  +  +P    S KSL   
Sbjct: 64  RLRDCLDRQAHELELNNLGLSSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVD 119

Query: 120 HLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP 179
           +     L+D +P  L       ++ +  N  +  +P +L N S ++ +D+   +L   +P
Sbjct: 120 NNNLKALSD-LPPLL------EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLP 169

Query: 180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLL 239
               +L  +       NQL  +   E   +  L ++   +N L   +P+      +L  +
Sbjct: 170 DLPPSLEFIA---AGNNQL--EELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESI 220

Query: 240 SLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIP 299
               N +       L  LP L  ++  NN    +LP+       L  ++V  N     +P
Sbjct: 221 VAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLP 273

Query: 300 PDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYI 359
               S   L  L +  N F+  LS    N   L  L    N     +       P +  +
Sbjct: 274 ELPQS---LTFLDVSENIFS-GLSELPPN---LYYLNASSNEIR-SLC---DLPPSLEEL 322

Query: 360 DLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNL 419
           ++S N     +P       +LE    S N  L   +P       +L+        +    
Sbjct: 323 NVSNNKLI-ELPALP---PRLERLIASFN-HL-AEVPE---LPQNLKQLHVEYNPLR-EF 372

Query: 420 PPFKSCKSISVIES-HMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGV 478
           P          +E   MN+    +PE   N   L+++ +  N L    P++   +     
Sbjct: 373 PD-----IPESVEDLRMNSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPESVE---D 420

Query: 479 LDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
           L ++   +         +   L       +   
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  140 bits (354), Expect = 1e-35
 Identities = 82/480 (17%), Positives = 159/480 (33%), Gaps = 111/480 (23%)

Query: 37  EIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN 96
              + T L       +N +   P   +++++        + +  + P    +   + V  
Sbjct: 6   RNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 97  LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPW 156
           L                +    L L    L+  +P     L                   
Sbjct: 65  LRDC-----------LDRQAHELELNNLGLSS-LPELPPHL------------------- 93

Query: 157 QLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLD 216
                   + L  +  +L+  +P+   +L  L         L+   P        L+ L 
Sbjct: 94  --------ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLG 137

Query: 217 LSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPE 276
           +S+N+L   +PE   +   L+++ +  N +   +P+     PSLE +   NN     LPE
Sbjct: 138 VSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELPE 190

Query: 277 NLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR 336
            L     L  +    N+    +P    S   L  ++  +N     L P L N   L  + 
Sbjct: 191 -LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE-EL-PELQNLPFLTTIY 243

Query: 337 LEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIP 396
            ++N     +P      P +  +++  N  T  +P      + L+      +      + 
Sbjct: 244 ADNNLLK-TLP---DLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFS-----GLS 293

Query: 397 AQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERID 456
                 P+L   +AS+  I                         ++ +   +   LE ++
Sbjct: 294 E---LPPNLYYLNASSNEIR------------------------SLCDLPPS---LEELN 323

Query: 457 LANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS 516
           ++NNKLI  +P +  RL     L  S N L+ ++P       +L  L+V +N +    P 
Sbjct: 324 VSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPD 374

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  127 bits (320), Expect = 3e-31
 Identities = 72/381 (18%), Positives = 129/381 (33%), Gaps = 51/381 (13%)

Query: 8   LPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRN 67
              K L      L  L +S+N    + P E+ N + L  +D+  N+     P    SL  
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF 177

Query: 68  LLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLN 127
              + A +N     +P E+  L  L  +    +     +P       SLE +    N+L 
Sbjct: 178 ---IAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDLPL---SLESIVAGNNIL- 227

Query: 128 DQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTK 187
            +   EL  L  +T +    N  +  +P    ++  +   D    N    +P+   +LT 
Sbjct: 228 -EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRD----NYLTDLPELPQSLTF 281

Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 247
           L+      + L             L  L+ S N +   + +      +L  L++  N++ 
Sbjct: 282 LDVSENIFSGL-------SELPPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLI 330

Query: 248 GTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV 307
             +P      P LE L    N+ +  +PE       L+ + V  N      P    S   
Sbjct: 331 -ELPAL---PPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPES--- 378

Query: 308 LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFT 367
           +  L +  N+    +     N   L +L +E N    E P     +     + ++     
Sbjct: 379 VEDLRM--NSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPESV---EDLRMNSERVV 429

Query: 368 GGIPTDINQASKLEYFNVSNN 388
                      KLE     ++
Sbjct: 430 DPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (290), Expect = 2e-27
 Identities = 67/358 (18%), Positives = 113/358 (31%), Gaps = 67/358 (18%)

Query: 165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 224
           Q      +NL+  +P E  N+      +   ++     P        +    L D     
Sbjct: 14  QEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-- 70

Query: 225 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKL 284
                    +    L L    +S ++PE     P LE L    N  +  LPE       L
Sbjct: 71  ---------RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSL 116

Query: 285 RWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSG 344
              + +    +   P       +L  L + +N     L P L N S L  + +++NS   
Sbjct: 117 LVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KL-PELQNSSFLKIIDVDNNSLK- 166

Query: 345 EIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPS 404
           ++P      P + +I    N     +P ++     L      NN  L  +         S
Sbjct: 167 KLP---DLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN-SLKKLPD----LPLS 216

Query: 405 LQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIG 464
           L++  A    +                              + N   L  I   NN L  
Sbjct: 217 LESIVAGNNILE-------------------------ELPELQNLPFLTTIYADNNLLK- 250

Query: 465 SIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
           ++P+     P L  L++  N L+  +P    S + L V    F+ +S   P+   L  
Sbjct: 251 TLPD---LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 84.3 bits (209), Expect = 3e-17
 Identities = 49/248 (19%), Positives = 86/248 (34%), Gaps = 47/248 (18%)

Query: 298 IPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPD-- 355
           I P   S   L + +  S+N T  +     N  S        + +    P    +  +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 356 -----------INYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPS 404
                       + ++L+  G +  +P        LE    S N  L   +P    SL S
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELP---PHLESLVASCN-SL-TELPELPQSLKS 115

Query: 405 LQNFSASACNITG----------------NLPPFKSCKSISVIESHMNNLSGTIPESVSN 448
           L   + +   ++                  LP  ++   + +I+   N+L   +P+   +
Sbjct: 116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 449 CVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFN 508
              LE I   NN+L   +PE L  LP L  +   +NSL  ++P       SL  +    N
Sbjct: 175 ---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGNN 225

Query: 509 DISGSIPS 516
            +   +P 
Sbjct: 226 ILE-ELPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 6e-09
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 371 PTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISV 430
           P +++     E    S+N      +P +  ++ S   +  +      N PP         
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTE---MPVEAENVKSKTEYYNAWSEWERNAPP--------G 53

Query: 431 IESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQI 490
                      + + +    +   ++L N  L  S+PE+   L  L     S NSL+ ++
Sbjct: 54  NGEQREMAVSRLRDCLDR--QAHELELNNLGL-SSLPELPPHLESL---VASCNSLT-EL 106

Query: 491 PAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
           P    S  SL V N +   +S   P  + L +
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPLLEYLGV 138

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  150 bits (381), Expect = 7e-39
 Identities = 80/495 (16%), Positives = 158/495 (31%), Gaps = 32/495 (6%)

Query: 18  NELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           N      ++ +S   Q    +  +  ++  LD+S N  S      +     L +L+  SN
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
                   ++  L  L+ L+L  +Y       +     S+E LH A N ++  +      
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR-VSCS--R 118

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG-SIPKELSNLTKLESLFLFR 195
            +   ++ +  N          G  S VQYLD+    +   +  +  ++   LE L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           N +   V  +      LK+LDLS N+L+  +   F     +  +SL  N++   + ++L 
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 256 QLPSLEILFIWNNYFS-GSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILF 314
              +LE   +  N F  G+L +   +N +++ V          +         +  L  +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA---KQTVKKLTGQNEEECTVPTLGHY 291

Query: 315 SNNFTGSL-SPSLSNCSSLVRLRLEDNSFSG----EIPLKFSQLPDINYIDLSRNGFTGG 369
                  L +P      +L R      S  G     +  +         ID  +  +   
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351

Query: 370 IPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQ---NFSASACNITGNLPPFKSCK 426
           I     +              L   +     +   L      +     +          +
Sbjct: 352 IDQVTLRKQAKITLEQKKK-ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 427 SISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSL 486
            +  I      +        +N +     D+  +K      E      + G  DL+  S 
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDW--DMYQHKETQLAEENARLKKLNGEADLALASA 468

Query: 487 SGQIPAKFGSCSSLT 501
           +  +        +L 
Sbjct: 469 NATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  145 bits (367), Expect = 5e-37
 Identities = 74/445 (16%), Positives = 148/445 (33%), Gaps = 70/445 (15%)

Query: 62  IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL 121
            Q+     +     +S   ++ +      ++K L+L+G+  S    +    F  LE L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE 181
           + N+L +                             L ++S ++ LD+    +      E
Sbjct: 66  SSNVLYE-TLD-------------------------LESLSTLRTLDLNNNYVQ-----E 94

Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
           L     +E+L    N ++ +V    SR    K++ L++N+++            ++ L L
Sbjct: 95  LLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 242 MYNEMSG-TVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
             NE+      E      +LE L +  N+                            +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-------------------------DVKG 186

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
            +     L  L L SN     + P   + + +  + L +N     I        ++ + D
Sbjct: 187 QVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 361 LSRNGFTGGIPTD-INQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNL 419
           L  NGF  G   D  ++  +++        KL G    +  ++P+L ++ A  C      
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG-QNEEECTVPTLGHYGAYCCEDLPA- 301

Query: 420 PPFKSCKSISVIESHMNNLSG----TIPESVSNCVELERIDLANNKLIGSIPEVLARLPV 475
           P      ++   E  + +  G     +     N      ID    +    I +V  R   
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQA 361

Query: 476 LGVLDLSHNSLSGQIPAKFGSCSSL 500
              L+    +L  Q+     + + L
Sbjct: 362 KITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (345), Expect = 3e-34
 Identities = 57/364 (15%), Positives = 120/364 (32%), Gaps = 21/364 (5%)

Query: 159 GNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLS 218
            N +  +   +  ++L  ++     +   ++ L L  N L+     + +  T L+ L+LS
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 219 DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL 278
            N L   +      L  LR L L  N +       L+  PS+E L   NN  S  +  + 
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR 118

Query: 279 GRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTG-SLSPSLSNCSSLVRLRL 337
           G+    + + ++ N        D      +  L L  N     + +   ++  +L  L L
Sbjct: 119 GQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 338 EDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPA 397
           + N    ++         +  +DLS N     +  +   A+ + + ++ NN KL  +I  
Sbjct: 177 QYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KL-VLIEK 231

Query: 398 QTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDL 457
                 +L++F                 K+  V       +     ++   C        
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 458 ANNKLIGSIPEVLARLPVLGVLDLSHNSLSG----QIPAKFGSCSSLTVLNVSFNDISGS 513
                         RL  L   + +  S  G    ++  +  + +    ++        +
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-T 350

Query: 514 IPSG 517
           +   
Sbjct: 351 VIDQ 354

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 1e-22
 Identities = 36/275 (13%), Positives = 85/275 (30%), Gaps = 12/275 (4%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG-HFPGGIQSLRNLLVLDAFS 75
                ++ L++N  +    ++    + +  LD+  N     +F     S   L  L+   
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           N     V  ++     LK L+L+ +  +  +  +F S   + ++ L  N L   I   L 
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALR 234

Query: 136 MLKTVTHMEIGYN-FYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLF 194
             + + H ++  N F+ G +         VQ +      +     +     T        
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYG 292

Query: 195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSG----PIPESFADLKNLRLLSLMYNEMSGTV 250
                        R+  LK  + +     G     +     +    R +  +  +    +
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

Query: 251 PESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLR 285
            +  ++  +   L          +      +++L 
Sbjct: 353 DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.8 bits (215), Expect = 6e-18
 Identities = 35/284 (12%), Positives = 69/284 (24%), Gaps = 27/284 (9%)

Query: 12  PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVL 71
             ++ F +L  L+LS N  +     E  +   +  + +  N         ++  +NL   
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 72  DAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP 131
           D   N F           ++ +V  +A                     H       D   
Sbjct: 243 DLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 132 AELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESL 191
                L  +   E      QG+                        +  E  N  +   +
Sbjct: 302 PFADRLIALKRKEHALLSGQGSET--------------------ERLECERENQARQREI 341

Query: 192 FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG--T 249
              + Q    +     R     +L+     L   +         L               
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401

Query: 250 VPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNN 293
             E    L  L  +     Y    + +   +N+ +R  D+  + 
Sbjct: 402 ATEEQSPLQLLRAIV--KRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 17/74 (22%), Positives = 31/74 (41%)

Query: 442 IPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLT 501
           I E   N    +   + ++ L  ++  +      +  LDLS N LS    A     + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 502 VLNVSFNDISGSIP 515
           +LN+S N +  ++ 
Sbjct: 62  LLNLSSNVLYETLD 75

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  143 bits (364), Expect = 3e-38
 Identities = 63/280 (22%), Positives = 110/280 (39%), Gaps = 73/280 (26%)

Query: 632 GITVSVKKIEWGATR--IKIVSEF---ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
             TV+VKK+         ++  +F   I  +   +H+NL+ LLGF  +     L+Y Y+P
Sbjct: 54  NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMP 113

Query: 687 NGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM 741
           NG+L +++          W  + KI  G A G+ FLH +      H D+K++NI+ DE  
Sbjct: 114 NGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAF 170

Query: 742 EPHLAEFGFKYLTQLADGSFPAKIAWTES---------GEF-YNAMKEEMYM-------- 783
              +++FG             A+ +   +         G   Y A  E   +        
Sbjct: 171 TAKISDFGL------------ARASEKFAQTVMTSRIVGTTAYMA-PE--ALRGEITPKS 215

Query: 784 DVYGFGEIILEILTNGRLTNAGSSLQN-----KP-----------IDGLLGEMYNENEVG 827
           D+Y FG ++LEI+T     +     Q      +            ID  + +  +   V 
Sbjct: 216 DIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMND-ADSTSV- 273

Query: 828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                    + +  VA  C     + RP +++  +LL  +
Sbjct: 274 ---------EAMYSVASQCLHEKKNKRPDIKKVQQLLQEM 304

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (363), Expect = 8e-38
 Identities = 48/337 (14%), Positives = 110/337 (32%), Gaps = 27/337 (8%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
             +L    ++    +   +       + D +R     H      +  N  +      +  
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALK 69

Query: 80  GSVPAEISQL--EHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 137
            +    +          L L         P Q      L+ + +    L  ++P  +   
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 138 KTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
             +  + +  N  +  +P  + +++ ++ L I        +P+ L++           N 
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN- 184

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
                         L+SL L    +   +P S A+L+NL+ L +  + +S  +  ++  L
Sbjct: 185 --------------LQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNN 317
           P LE L +       + P   G  + L+ + +   +   ++P DI     L KL L    
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 318 FTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLP 354
               L   ++   +   + +  +  +     +    P
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  139 bits (353), Expect = 1e-36
 Identities = 57/378 (15%), Positives = 121/378 (32%), Gaps = 71/378 (18%)

Query: 114 KSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGAN 173
              E L+  G+         L   +   + +        +  W+  N +  Q     G  
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRA 67

Query: 174 LSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADL 233
           L  +    L + T+                          +L+L    L    P+    L
Sbjct: 68  LK-ATADLLEDATQP----------------------GRVALELRSVPLPQ-FPDQAFRL 103

Query: 234 KNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNN 293
            +L+ +++    +   +P+++ Q   LE L +  N    +LP ++   ++LR + +    
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161

Query: 294 FNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQL 353
               +P  + S                  S       +L  LRLE       +P   + L
Sbjct: 162 ELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205

Query: 354 PDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASAC 413
            ++  + +  +  +  +   I+   KLE  ++     L    P        L+      C
Sbjct: 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDC 263

Query: 414 NITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARL 473
           +                      NL  T+P  +    +LE++DL     +  +P ++A+L
Sbjct: 264 S----------------------NLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 474 PVLGVLDLSHNSLSGQIP 491
           P   ++ +  +  +    
Sbjct: 301 PANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (351), Expect = 3e-36
 Identities = 57/282 (20%), Positives = 92/282 (32%), Gaps = 41/282 (14%)

Query: 7   ALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLR 66
           A             V L L       QFP + F L+ L  + I         P  +Q   
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 67  NLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG---------SYFSGPIPSQFGSFKSLE 117
            L  L    N    ++PA I+ L  L+ L++              S     +     +L+
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 118 FLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS 177
            L L    +   +PA +  L+ +  ++I  +                         LS +
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNS------------------------PLS-A 220

Query: 178 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD-NRLSGPIPESFADLKNL 236
           +   + +L KLE L L         P  F     LK L L D + L   +P     L  L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQL 279

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL 278
             L L        +P  + QLP+  I+ +  +     L ++ 
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (351), Expect = 3e-36
 Identities = 59/313 (18%), Positives = 108/313 (34%), Gaps = 19/313 (6%)

Query: 62  IQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL 121
                    L    ++        +SQ +     +    +       +  +  + +    
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETR 63

Query: 122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQ-GNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
            G  L       L        + +          P Q   +S +Q++ I  A L   +P 
Sbjct: 64  TGRALKA-TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFA--------- 231
            +     LE+L L RN L   +P   + +  L+ L +        +PE  A         
Sbjct: 122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 232 DLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST 291
            L NL+ L L +  +  ++P S+  L +L+ L I N+  S +L   +    KL  +D+  
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

Query: 292 NNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFS 351
                + PP       L +LIL   +   +L   +   + L +L L        +P   +
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 352 QLPDINYIDLSRN 364
           QLP    I +  +
Sbjct: 299 QLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (302), Expect = 8e-30
 Identities = 45/367 (12%), Positives = 100/367 (27%), Gaps = 75/367 (20%)

Query: 152 GNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTT 211
           G+      + S  + L   G+         LS   +  +    R        W  +    
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 212 LKSLDLSDNRLSGPIPESFADLK--NLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 269
            +    +   L     +   D        L L    +    P+   +L  L+ + I    
Sbjct: 58  PQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 270 FSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNC 329
               LP+ + + + L  + ++ N                            +L  S+++ 
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-------------------------ALPASIASL 149

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
           + L  L +       E+P   +                     +      L+   +    
Sbjct: 150 NRLRELSIRACPELTELPEPLASTD---------------ASGEHQGLVNLQSLRLEWT- 193

Query: 390 KLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNC 449
            +   +PA   +L +L++       ++                         +  ++ + 
Sbjct: 194 GIRS-LPASIANLQNLKSLKIRNSPLS------------------------ALGPAIHHL 228

Query: 450 VELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFND 509
            +LE +DL     + + P +      L  L L   S    +P      + L  L++    
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 510 ISGSIPS 516
               +PS
Sbjct: 289 NLSRLPS 295

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  137 bits (347), Expect = 9e-36
 Identities = 75/290 (25%), Positives = 110/290 (37%), Gaps = 83/290 (28%)

Query: 626 KAVLPTGITVSVKKIEWGATRIKIVS-----EFITRIGT---VRHKNLIRLLGFCYNRHQ 677
           K VL  G  V++K       R    S     EF T I T    RH +L+ L+GFC  R++
Sbjct: 57  KGVLRDGAKVALK-------RRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE 109

Query: 678 AYLLYDYLPNGNL------SEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLK 731
             L+Y Y+ NGNL      S+       W  + +I +G ARGL +LH      I H D+K
Sbjct: 110 MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVK 166

Query: 732 ASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTES---------GEF-YNAMKEEM 781
           + NI+ DEN  P + +FG             +K               G   Y  +  E 
Sbjct: 167 SINILLDENFVPKITDFGI------------SKKGTELDQTHLSTVVKGTLGY--IDPEY 212

Query: 782 YM--------DVYGFGEIILEILTNGRLTN-------------AGSSLQNKPIDGL---- 816
           ++        DVY FG ++ E+L                    A  S  N  ++ +    
Sbjct: 213 FIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPN 272

Query: 817 LGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSG 866
           L +      +          +   D A+ C   +  DRPSM + L  L  
Sbjct: 273 LADKIRPESL----------RKFGDTAVKCLALSSEDRPSMGDVLWKLEY 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (343), Expect = 1e-34
 Identities = 58/344 (16%), Positives = 123/344 (35%), Gaps = 22/344 (6%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
            I   L        + +          +E   +   K +   ++ +           + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN-SKLRWVDVSTNNFN 295
            LL+L   ++      +     +++ L++  N     LP ++ +N   L  + +  N+ +
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 296 GSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLP 354
            S+P  I      L  L + +NN       +    +SL  L+L  N  +    +  S +P
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIP 186

Query: 355 DINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACN 414
            + + ++S N       + +     +E  + S+N  +  ++         L        N
Sbjct: 187 SLFHANVSYNLL-----STLAIPIAVEELDASHN-SI-NVVRGPV--NVELTILKLQHNN 237

Query: 415 ITGNLPPFKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSIPEVLARL 473
           +T +     +   +  ++   N L   I          LER+ ++NN+ + ++      +
Sbjct: 238 LT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI 294

Query: 474 PVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
           P L VLDLSHN L   +         L  L +  N I  ++   
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS 336

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  133 bits (336), Expect = 1e-33
 Identities = 69/364 (18%), Positives = 122/364 (33%), Gaps = 27/364 (7%)

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           E   L   + +    + +             ++ L+L+D ++      +FA    ++ L 
Sbjct: 40  EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 99

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL-GRNSKLRWVDVSTNNFNGSIP 299
           + +N +    P     +P L +L +  N  S SLP  +     KL  + +S NN    I 
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIE 157

Query: 300 PDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINY 358
            D       L  L L SN  T      LS   SL    +  N  S       +    +  
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEE 209

Query: 359 IDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN 418
           +D S N     +   +N   +L    + +N  L         + P L     S   +   
Sbjct: 210 LDASHNSINV-VRGPVNV--ELTILKLQHN-NLTD-TAW-LLNYPGLVEVDLSYNELE-K 262

Query: 419 LPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVL 476
           +    F   + +  +    N L   +         L+ +DL++N  +  +     +   L
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL 320

Query: 477 GVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCG 536
             L L HNS+   +     +  +L  L +S ND         + R +   A     + C 
Sbjct: 321 ENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHCK 376

Query: 537 APLQ 540
              Q
Sbjct: 377 IDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (322), Expect = 6e-32
 Identities = 77/432 (17%), Positives = 134/432 (31%), Gaps = 96/432 (22%)

Query: 59  PGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF 118
              +Q       +     +       E   L + K++    S       +   SF+ +E 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI 178
           L+L    + + I                                 +Q L +    +   +
Sbjct: 74  LNLNDLQIEE-IDTYA-----------------------FAYAHTIQKLYMGFNAIR-YL 108

Query: 179 PKE-LSNLTKLESLFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
           P     N+  L  L L RN L+  +P   F     L +L +S+N L     ++F    +L
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG 296
           + L L  N ++  V  SL  +PSL    +  N  S      L     +  +D S N+ N 
Sbjct: 168 QNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN- 218

Query: 297 SIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLK-FSQLPD 355
            +   +     L  L L  NN T   +  L N   LV + L  N    +I    F ++  
Sbjct: 219 VVRGPVNVE--LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQR 273

Query: 356 INYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNI 415
           +  + +S N     +         L+  ++S+N                         ++
Sbjct: 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN-------------------------HL 307

Query: 416 TGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPV 475
                                     +  +      LE + L +N  I ++   L+    
Sbjct: 308 L------------------------HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHT 340

Query: 476 LGVLDLSHNSLS 487
           L  L LSHN   
Sbjct: 341 LKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (319), Expect = 2e-31
 Identities = 63/375 (16%), Positives = 120/375 (32%), Gaps = 48/375 (12%)

Query: 18  NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
               D+++   +    F  E   L +   +    +         + S R + +L+     
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 78  FSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
               +     +    ++ L +  +      P  F +   L  L L  N L+  +P  +  
Sbjct: 81  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI-- 136

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFR 195
                                  N  ++  L ++  NL   I  +     T L++L L  
Sbjct: 137 ---------------------FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSS 174

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           N+L   V    S + +L   ++S N LS     + A    +  L   +N ++  V   + 
Sbjct: 175 NRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV- 224

Query: 256 QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILF 314
               L IL + +N  +      L     L  VD+S N     I          L +L + 
Sbjct: 225 -NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYIS 280

Query: 315 SNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI 374
           +N    +L+       +L  L L  N     +     Q   +  + L  N     +    
Sbjct: 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST 337

Query: 375 NQASKLEYFNVSNNP 389
           +    L+   +S+N 
Sbjct: 338 H--HTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (310), Expect = 2e-30
 Identities = 58/332 (17%), Positives = 116/332 (34%), Gaps = 24/332 (7%)

Query: 15  IFFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDA 73
           I  N    +   +++   + P  +  +   +  L+++                 +  L  
Sbjct: 42  ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100

Query: 74  FSNSFSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPA 132
             N+    +P  +   +  L VL L  +  S      F +   L  L ++ N L  +I  
Sbjct: 101 GFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED 158

Query: 133 ELGM-LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESL 191
           +      ++ ++++  N    ++   L  +  + + +++   LS      L+    +E L
Sbjct: 159 DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 210

Query: 192 FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVP 251
               N +             L  L L  N L+        +   L  + L YNE+   + 
Sbjct: 211 DASHNSINVVRGPVNVE---LTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMY 265

Query: 252 ESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKL 311
              V++  LE L+I NN    +L         L+ +D+S N+    +  +      L  L
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 312 ILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFS 343
            L  N+   +L    S   +L  L L  N + 
Sbjct: 324 YLDHNSIV-TLKL--STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 38/231 (16%), Positives = 80/231 (34%), Gaps = 41/231 (17%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
              L   N+S+N  S      +    ++  LD S N+ +    G +     L +L    N
Sbjct: 185 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 236

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
           + +      +     L  ++L+ +     +   F   + LE L+++ N L          
Sbjct: 237 NLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--------- 285

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
                            +      +  ++ LD++  +L   + +      +LE+L+L  N
Sbjct: 286 ----------------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 247
            +   +    S   TLK+L LS N        +    +N+   ++   +  
Sbjct: 329 SIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (335), Expect = 3e-34
 Identities = 64/330 (19%), Positives = 120/330 (36%), Gaps = 27/330 (8%)

Query: 18  NELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           N      ++ +S   Q    +  +  ++  LD+S N  S      +     L +L+  SN
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
                   ++  L  L+ L+L  +Y       +     S+E LH A N ++  +      
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR-VSCSR-- 118

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG-SIPKELSNLTKLESLFLFR 195
            +   ++ +  N          G  S VQYLD+    +   +  +  ++   LE L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           N +             LK+LDLS N+L+  +   F     +  +SL  N++   + ++L 
Sbjct: 179 NFIYDVKGQVV--FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 256 QLPSLEILFIWNNYFS-GSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILF 314
              +LE   +  N F  G+L +   +N +++ V   T         + C+   L      
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY--- 291

Query: 315 SNNFTGSLSPSLSNCSSLVRLR-LEDNSFS 343
              +     P+        RL  L  +   
Sbjct: 292 -GAYCCEDLPA----PFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (323), Expect = 1e-32
 Identities = 45/322 (13%), Positives = 100/322 (31%), Gaps = 17/322 (5%)

Query: 37  EIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL 95
           EI  N        ++ ++         QS  N+  LD   N  S    A+++    L++L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 96  NLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIP 155
           NL+ +     +     S  +L  L L  N +      EL +  ++  +    N     + 
Sbjct: 64  NLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS 115

Query: 156 WQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG-QVPWEFSRVTTLKS 214
                    + + +A   ++     +    ++++ L L  N++         +   TL+ 
Sbjct: 116 --CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 215 LDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSL 274
           L+L  N +   +         L+ L L  N+++  +         +  + + NN     +
Sbjct: 174 LNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 275 PENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVR 334
            + L  +  L   D+  N F+                 +           +   C+    
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 335 LRLEDNSFSGEIPLKFSQLPDI 356
                            +L  +
Sbjct: 289 GHYGAYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  124 bits (314), Expect = 2e-31
 Identities = 51/309 (16%), Positives = 112/309 (36%), Gaps = 17/309 (5%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
           ++          K+  +  S     + S   S  +++ L L+GN L+    A+L     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG 200
             + +  N         L ++S ++ LD+    +      EL     +E+L    N ++ 
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 201 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG-TVPESLVQLPS 259
           +V    SR    K++ L++N+++            ++ L L  NE+      E      +
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 260 LEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFT 319
           LE L +  N+    +   +   +KL+ +D+S+N     + P+  S   +  + L +N   
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 320 GSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASK 379
             +  +L    +L    L  N F     L+     +     +++      +     +   
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECT 284

Query: 380 LEYFNVSNN 388
           +        
Sbjct: 285 VPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (309), Expect = 7e-31
 Identities = 55/336 (16%), Positives = 95/336 (28%), Gaps = 64/336 (19%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
           +I +   N  + +   +  + L   +         +K LDLS N LS       A    L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG 296
            LL+L  N +       L  L +L  L + NNY        L     +  +  + NN + 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 297 SIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDI 356
            +                                    + L +N  +    L       +
Sbjct: 113 RVSCSR--------------------------GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 357 NYIDLSRNGFTG-GIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNI 415
            Y+DL  N             +  LE+ N+  N                          I
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-------------------------FI 181

Query: 416 TGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPV 475
             ++        +  ++   N L+  +     +   +  I L NNKL+  I + L     
Sbjct: 182 Y-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 476 LGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
           L   DL  N        +     +  V  V+   + 
Sbjct: 239 LEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (296), Expect = 4e-29
 Identities = 48/310 (15%), Positives = 112/310 (36%), Gaps = 17/310 (5%)

Query: 106 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ 165
           I     +    +   +  + L   + +       V  +++  N         L   ++++
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 166 YLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGP 225
            L+++   L      +L +L+ L +L L  N +      E     ++++L  ++N +S  
Sbjct: 62  LLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113

Query: 226 IPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSG-SLPENLGRNSKL 284
           +  S    +  + + L  N+++            ++ L +  N     +  E    +  L
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 285 RWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSG 344
             +++  N     +   +     L  L L SN     + P   + + +  + L +N    
Sbjct: 172 EHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 345 EIPLKFSQLPDINYIDLSRNGFTGGIPTDIN-QASKLEYFNVSNNPKLGGMIPAQTWSLP 403
            I        ++ + DL  NGF  G   D   +  +++        KL G    +  ++P
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ-NEEECTVP 286

Query: 404 SLQNFSASAC 413
           +L ++ A  C
Sbjct: 287 TLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (296), Expect = 4e-29
 Identities = 57/332 (17%), Positives = 114/332 (34%), Gaps = 27/332 (8%)

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
           N +  +   +  ++L  ++     +   ++ L L  N L+     + +  T L+ L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG 279
           N L   +      L  LR L L  N +       L+  PS+E L   NN  S  +  + G
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRG 119

Query: 280 RNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTG-SLSPSLSNCSSLVRLRLE 338
           +    + + ++ N        D      +  L L  N     + +   ++  +L  L L+
Sbjct: 120 QG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 339 DNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQ 398
            N    ++         +  +DLS N     +  +   A+ + + ++ NN KL  +I   
Sbjct: 178 YNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KL-VLIEKA 232

Query: 399 TWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLA 458
                +L++F                C ++    S    +     ++V         +  
Sbjct: 233 LRFSQNLEHFDLRGNGF--------HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 459 NNKLIGSIPEVLARLP---VLGVLDLSHNSLS 487
              L          LP      ++ L H+   
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 29/208 (13%), Positives = 69/208 (33%), Gaps = 11/208 (5%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG-HFPGGIQSLRNLLVLDAFS 75
                ++ L++N  +    ++    + +  LD+  N     +F     S   L  L+   
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           N     V  ++     LK L+L+ +  +  +  +F S   + ++ L  N L   I   L 
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALR 234

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
             + + H ++  N       +  G + +    +     ++    K+L+   + E      
Sbjct: 235 FSQNLEHFDLRGN------GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLS 223
                    +       + + L  +   
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 12  PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVL 71
             ++ F +L  L+LS N  +     E  +   +  + +  N         ++  +NL   
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 72  DAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP 131
           D   N F           ++ +V  +A       +  Q     ++  L   G    + +P
Sbjct: 243 DLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 132 A 132
           A
Sbjct: 301 A 301

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (336), Expect = 1e-32
 Identities = 59/349 (16%), Positives = 123/349 (35%), Gaps = 22/349 (6%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
            I   L        + +          +E   +   K +   ++ +           + +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN-SKLRWVDVSTNNFN 295
            LL+L   ++      +     +++ L++  N     LP ++ +N   L  + +  N+ +
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 296 GSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLP 354
            S+P  I      L  L + +NN       +    +SL  L+L  N  +  +    S +P
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 192

Query: 355 DINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACN 414
            + + ++S N       + +     +E  + S+N     ++         L        N
Sbjct: 193 SLFHANVSYNLL-----STLAIPIAVEELDASHNSI--NVVRGPV--NVELTILKLQHNN 243

Query: 415 ITGNLPPFKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSIPEVLARL 473
           +T +     +   +  ++   N L   I          LER+ ++NN+ + ++      +
Sbjct: 244 LT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI 300

Query: 474 PVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
           P L VLDLSHN L   +         L  L +  N I  ++       L
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTL 347

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (315), Expect = 4e-30
 Identities = 76/431 (17%), Positives = 132/431 (30%), Gaps = 94/431 (21%)

Query: 59  PGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF 118
              +Q       +     +       E   L + K++    S       +   SF+ +E 
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI 178
           L+L    + + I                                 +Q L +    +   +
Sbjct: 80  LNLNDLQIEE-IDTYA-----------------------FAYAHTIQKLYMGFNAIR-YL 114

Query: 179 PKE-LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLR 237
           P     N+  L  L L RN L+      F     L +L +S+N L     ++F    +L+
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 238 LLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGS 297
            L L  N ++  V  SL  +PSL    +  N  S      L     +  +D S N+ N  
Sbjct: 175 NLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-V 225

Query: 298 IPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLK-FSQLPDI 356
           +   +     L  L L  NN T   +  L N   LV + L  N    +I    F ++  +
Sbjct: 226 VRGPVNVE--LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 280

Query: 357 NYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT 416
             + +S N     +         L+  ++S+N                         ++ 
Sbjct: 281 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN-------------------------HLL 314

Query: 417 GNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVL 476
                                    +  +      LE + L +N  I ++   L+    L
Sbjct: 315 ------------------------HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTL 347

Query: 477 GVLDLSHNSLS 487
             L LSHN   
Sbjct: 348 KNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 2e-29
 Identities = 77/495 (15%), Positives = 173/495 (34%), Gaps = 60/495 (12%)

Query: 35  PVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEI-SQLEHLK 93
              +        + I       +F     +L N  ++   +++    +PA +      ++
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVE 78

Query: 94  VLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGN 153
           +LNL            F    +++ L++  N +   +P  +                   
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHV------------------- 118

Query: 154 IPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLAGQVPWE-FSRVTT 211
                 N+  +  L +   +LS S+P+ +  N  KL +L +  N L  ++  + F   T+
Sbjct: 119 ----FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTS 172

Query: 212 LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 271
           L++L LS NRL+  +    + + +L   ++ YN +S     +L    ++E L   +N  +
Sbjct: 173 LQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 224

Query: 272 GSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSP-SLSNCS 330
             +   +  N +L  + +  NN   +    + +   L ++ L  N     +         
Sbjct: 225 -VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQ 278

Query: 331 SLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPK 390
            L RL + +N     + L    +P +  +DLS N     +  +  Q  +LE   + +N  
Sbjct: 279 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN-S 335

Query: 391 LGGMIPAQTWSLPSLQNFSASACNITGN--LPPFKSCKSISVIESHMNNLSGTIPESVSN 448
           +   +   T    +L+N + S  +   N     F++    +V ++  +       E    
Sbjct: 336 I-VTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 392

Query: 449 CVELER-------IDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLT 501
           C E ++         +A   ++  +     R      ++   +                 
Sbjct: 393 CKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNE 452

Query: 502 VLNVSFNDISGSIPS 516
            L    N++   +  
Sbjct: 453 QLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  122 bits (307), Expect = 4e-29
 Identities = 58/343 (16%), Positives = 118/343 (34%), Gaps = 24/343 (6%)

Query: 4   LSGALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGI 62
            +  +      I  N    +   +++   + P  +  +   +  L+++            
Sbjct: 37  QTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAF 95

Query: 63  QSLRNLLVLDAFSNSFSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL 121
                +  L    N+    +P  +   +  L VL L  +  S      F +   L  L +
Sbjct: 96  AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154

Query: 122 AGNLLNDQIPAELGM-LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           + N L  +I  +      ++ ++++  N    ++   L  +  + + +++   LS     
Sbjct: 155 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS----- 205

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
            L+    +E L    N +             L  L L  N L+        +   L  + 
Sbjct: 206 TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT-DTA-WLLNYPGLVEVD 260

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           L YNE+   +    V++  LE L+I NN    +L         L+ +D+S N+    +  
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 318

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFS 343
           +      L  L L  N+     +  LS   +L  L L  N + 
Sbjct: 319 NQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 41/238 (17%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
              L   N+S+N  S      +    ++  LD S N+ +    G +     L +L    N
Sbjct: 191 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 242

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
           + +      +     L  ++L+ +     +   F   + LE L+++ N L          
Sbjct: 243 NLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--------- 291

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
                            +      +  ++ LD++  +L   + +      +LE+L+L  N
Sbjct: 292 ----------------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL 254
            +   +    S   TLK+L LS N        +    +N+   ++   +    +   L
Sbjct: 335 SIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQL 387

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  128 bits (324), Expect = 1e-31
 Identities = 69/372 (18%), Positives = 131/372 (35%), Gaps = 39/372 (10%)

Query: 151 QGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVT 210
           Q         ++ +  LD   ++++  +   +  LT L  L    N +      + S+ T
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL---DLSQNT 85

Query: 211 TLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
            L  L    N+L+         L  L  L+   N+++  +  S  Q P L  L    N  
Sbjct: 86  NLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNCARNTL 139

Query: 271 SGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCS 330
           +  +   +  N++L  +D   N        D+     L  L    N  T      +S   
Sbjct: 140 T-EID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKIT---ELDVSQNK 191

Query: 331 SLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPK 390
            L RL  + N+ +    L  +Q   + ++D S N  T     D+   ++L YF+ S NP 
Sbjct: 192 LLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPL 245

Query: 391 LGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCV 450
               +     +L  L        ++   +    + + I         +       V++  
Sbjct: 246 --TELDV--STLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIK---ELDVTHNT 297

Query: 451 ELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDI 510
           +L  +D     +   +   L++ P L  L L++  L+ ++       + L  L+     I
Sbjct: 298 QLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 511 SGSIPSGKVLRL 522
                 GK+  L
Sbjct: 352 QDFSSVGKIPAL 363

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  121 bits (306), Expect = 2e-29
 Identities = 76/451 (16%), Positives = 153/451 (33%), Gaps = 73/451 (16%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           F   V       +      +    L +L SLD   ++ +     GI+ L  L  L   SN
Sbjct: 20  FASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSN 74

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
           + + ++   +SQ  +L  L    +  +  +         L +L+   N L          
Sbjct: 75  NIT-TLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT--------- 119

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
                            +   +     + YL+ A   L+  I   +S+ T+L  L    N
Sbjct: 120 ----------------KLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLN 158

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           +       + +  T L +LD S N+++       +  K L  L+   N ++  +   L Q
Sbjct: 159 KKIT--KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQ 210

Query: 257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSN 316
              L  L   +N  +  +   +   ++L + D S N     +     S   L  L     
Sbjct: 211 NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTLSK--LTTLHCIQT 264

Query: 317 NFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQ 376
           +    +   L++ + L+  + E      E+ +  +    +  +D    G T     D++Q
Sbjct: 265 DLL-EI--DLTHNTQLIYFQAEGCRKIKELDV--THNTQLYLLDCQAAGIT---ELDLSQ 316

Query: 377 ASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMN 436
             KL Y  ++N  +L   +         L++ S    +I  +        +++       
Sbjct: 317 NPKLVYLYLNNT-EL-TELDVS--HNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEG 371

Query: 437 NLSGTIPESVSN-----CVELERIDLANNKL 462
                  E+++N      V  + +D   N +
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (299), Expect = 2e-28
 Identities = 73/452 (16%), Positives = 142/452 (31%), Gaps = 71/452 (15%)

Query: 52  NNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFG 111
            +F+  FP    +  + +    F    + ++     QL  L  L+   S  +    +   
Sbjct: 9   QSFNDWFPD--DNFASEVAAA-FEMQATDTIS--EEQLATLTSLDCHNSSITD--MTGIE 61

Query: 112 SFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAG 171
               L  L    N +      +L     +T++    N    N+   +  ++++ YL+   
Sbjct: 62  KLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDT 115

Query: 172 ANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFA 231
             L+  +   +S    L  L   RN L      + S  T L  LD   N+    +     
Sbjct: 116 NKLT-KLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VT 167

Query: 232 DLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST 291
               L  L   +N+++      + Q   L  L    N  +  L   L +N +L ++D S+
Sbjct: 168 PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSS 221

Query: 292 NNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFS 351
           N     I                           ++  + L       N  +    L  S
Sbjct: 222 NKLT-EID--------------------------VTPLTQLTYFDCSVNPLT---ELDVS 251

Query: 352 QLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSAS 411
            L  +  +   +         D+   ++L YF      K+             L      
Sbjct: 252 TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKI---KELDVTHNTQLYLLDCQ 305

Query: 412 ACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLA 471
           A  IT  L        +  +  +   L+  +   VS+  +L+ +   N   I      + 
Sbjct: 306 AAGIT-EL-DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAH-IQDFSS-VG 358

Query: 472 RLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVL 503
           ++P L     +       +P +  + +SLT+ 
Sbjct: 359 KIPALNNNFEAEGQTI-TMPKETLTNNSLTIA 389

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (268), Expect = 1e-24
 Identities = 65/430 (15%), Positives = 135/430 (31%), Gaps = 44/430 (10%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
              L  L  + N+ +    +++   T+L  L    N  + +    +  L  L  L+  +N
Sbjct: 63  LTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTN 116

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             +     ++SQ   L  LN A +  +  I         L  L    N    ++   +  
Sbjct: 117 KLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTP 168

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
              +T ++  +N     +   +     +  L+    N++  +   L+   +L  L    N
Sbjct: 169 QTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSN 222

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           +L  ++    + +T L   D S N L+  +  S   L  L  L  +  ++       L  
Sbjct: 223 KLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEI---DLTH 273

Query: 257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSN 316
              L             L  ++  N++L  +D         +         L  L L + 
Sbjct: 274 NTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELDLSQNPK--LVYLYLNNT 328

Query: 317 NFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQ 376
             T  L   +S+ + L  L   +     +      ++P +N    +       +P +   
Sbjct: 329 ELT-EL--DVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTI-TMPKETLT 382

Query: 377 ASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT-GNLPPFKSCKSISVIESHM 435
            + L      +     G              +  +   IT  NL       + +    + 
Sbjct: 383 NNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN- 439

Query: 436 NNLSGTIPES 445
             + GT+   
Sbjct: 440 GAIVGTVTTP 449

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (259), Expect = 2e-23
 Identities = 52/354 (14%), Positives = 111/354 (31%), Gaps = 51/354 (14%)

Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 247
             S      ++         ++ TL SLD  ++ ++  +      L  L  L    N ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTG-IEKLTGLTKLICTSNNIT 77

Query: 248 GTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV 307
                 L Q  +L  L   +N  + +L   +   +KL +++  TN     +         
Sbjct: 78  TL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVSQNPL-- 128

Query: 308 LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFT 367
           L  L    N  T      +S+ + L  L    N    ++    +    +  +D S N  T
Sbjct: 129 LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 368 GGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT----GNLP--- 420
                D++Q   L   N   N  +  +   Q      L     S+  +T      L    
Sbjct: 184 E---LDVSQNKLLNRLNCDTN-NITKLDLNQ---NIQLTFLDCSSNKLTEIDVTPLTQLT 236

Query: 421 ------------PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPE 468
                          +   ++ +     +L   I   +++  +L        + I  +  
Sbjct: 237 YFDCSVNPLTELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD- 292

Query: 469 VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
            +     L +LD     ++ ++         L  L ++  +++  +      +L
Sbjct: 293 -VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELDVSHNTKL 341

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (259), Expect = 2e-23
 Identities = 59/376 (15%), Positives = 110/376 (29%), Gaps = 73/376 (19%)

Query: 13  LRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLD 72
           L    N +  L+LS               T+L  L    N  + +    +  L  L  L+
Sbjct: 69  LICTSNNITTLDLS-------------QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLN 112

Query: 73  AFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPA 132
             +N  +     ++SQ   L  LN A +  +  I         L  L    N    ++  
Sbjct: 113 CDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD- 165

Query: 133 ELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLF 192
                                    +   +++  LD +   ++  +   +S    L  L 
Sbjct: 166 -------------------------VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLN 197

Query: 193 LFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE 252
              N +      + ++   L  LD S N+L+  I      L  L       N ++  +  
Sbjct: 198 CDTNNITK---LDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV 250

Query: 253 SLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLI 312
           S   L  L  L          +   L  N++L +           +  D+     L+ L 
Sbjct: 251 S--TLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLD 303

Query: 313 LFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPT 372
             +   T      LS    LV L L +   + E+ +  S    +  +            +
Sbjct: 304 CQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDV--SHNTKLKSLSCVNAHIQ-DFSS 356

Query: 373 DINQASKLEYFNVSNN 388
            + +   L     +  
Sbjct: 357 -VGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.8 bits (231), Expect = 5e-20
 Identities = 60/287 (20%), Positives = 110/287 (38%), Gaps = 29/287 (10%)

Query: 225 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKL 284
              + F D  N         EM  T   S  QL +L  L   N+  +  +   + + + L
Sbjct: 10  SFNDWFPD-DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGL 66

Query: 285 RWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSG 344
             +  ++NN   ++     +   L  L   SN  T   +  ++  + L  L  + N  + 
Sbjct: 67  TKLICTSNNIT-TLDLSQNTN--LTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT- 119

Query: 345 EIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPS 404
              L  SQ P + Y++ +RN  T     D++  ++L   +   N K+             
Sbjct: 120 --KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT---KLDVTPQTQ 171

Query: 405 LQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIG 464
           L     S   IT  L      K ++ +    NN++  +   ++  ++L  +D ++NKL  
Sbjct: 172 LTTLDCSFNKIT-EL-DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT- 225

Query: 465 SIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
            I   +  L  L   D S N L+ ++     + S LT L+    D+ 
Sbjct: 226 EID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL 267

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (324), Expect = 4e-31
 Identities = 67/313 (21%), Positives = 117/313 (37%), Gaps = 44/313 (14%)

Query: 41  LTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS 100
                 L++  +  +   P  +    ++  L    N+ + S+PA   +   L+ L ++G+
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 101 YFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGN 160
             +  +P        L             +PA    L     + I  N    ++P     
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLT----HLPALPSGL---CKLWIFGNQLT-SLPVLPPG 142

Query: 161 MSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDN 220
           +   Q L ++   L+ S+P   S L KL     + NQL   +P   S    L+ L +SDN
Sbjct: 143 L---QELSVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSG---LQELSVSDN 191

Query: 221 RLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGR 280
           +L+  +P   ++L  L   +         +P        L+ L +  N  + SLP     
Sbjct: 192 QLAS-LPTLPSELYKLWAYNNRLTS----LPAL---PSGLKELIVSGNRLT-SLPVLPS- 241

Query: 281 NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDN 340
             +L+ + VS  N   S+P        L  L ++ N  T  L  SL + SS   + LE N
Sbjct: 242 --ELKELMVS-GNRLTSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 341 SFSGEIPLKFSQL 353
             S        ++
Sbjct: 295 PLSERTLQALREI 307

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  125 bits (316), Expect = 4e-30
 Identities = 76/353 (21%), Positives = 125/353 (35%), Gaps = 70/353 (19%)

Query: 165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 224
             L++  + L+ ++P  L     + +L +  N L   +P        L++L++S N+L+ 
Sbjct: 43  AVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLTS 95

Query: 225 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP-SLEILFIWNNYFSGSLPENLGRNSK 283
            +P     L  L + S             L  LP  L  L+I+ N  + SLP        
Sbjct: 96  -LPVLPPGLLELSIFSNPLT--------HLPALPSGLCKLWIFGNQLT-SLPVLPP---G 142

Query: 284 LRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFS 343
           L+ + VS N    S+P        L KL  ++N  T SL    S    L  L + DN  +
Sbjct: 143 LQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA 194

Query: 344 GEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLP 403
             +P   S+L     +    N  T  +P      S L+   VS N +L   +P       
Sbjct: 195 -SLPTLPSELY---KLWAYNNRLTS-LPALP---SGLKELIVSGN-RLTS-LPV---LPS 241

Query: 404 SLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLI 463
            L+    S   +T                        ++P   S    L  + +  N+L 
Sbjct: 242 ELKELMVSGNRLT------------------------SLPMLPSG---LLSLSVYRNQLT 274

Query: 464 GSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS 516
             +PE L  L     ++L  N LS +        +S    +        +  S
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  118 bits (296), Expect = 1e-27
 Identities = 67/322 (20%), Positives = 123/322 (38%), Gaps = 45/322 (13%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 269
                L++ ++ L+  +P+      ++  L +  N ++ ++P      P L  L +  N 
Sbjct: 40  NGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQ 92

Query: 270 FSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNC 329
            + SLP       +L             +P        L KL +F N  T SL       
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLT----HLPALPSG---LCKLWIFGNQLT-SLPVLPPG- 142

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
             L  L + DN  +  +P   S+L     +    N  T  +P      S L+  +VS+N 
Sbjct: 143 --LQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLT-SLPMLP---SGLQELSVSDN- 191

Query: 390 KLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNC 449
           +L   +P        L    A    +T +LP       +  +    N L+ ++P   S  
Sbjct: 192 QL-ASLPT---LPSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNRLT-SLPVLPSE- 242

Query: 450 VELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFND 509
             L+ + ++ N+L  S+P + + L     L +  N L+ ++P      SS T +N+  N 
Sbjct: 243 --LKELMVSGNRLT-SLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 510 ISGSIPSGKVLRLMGSSAYAGN 531
           +S       +  +  +  Y+G 
Sbjct: 296 LS-ERTLQALREITSAPGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.0 bits (231), Expect = 1e-19
 Identities = 46/279 (16%), Positives = 91/279 (32%), Gaps = 40/279 (14%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
              L +L++S N  +   P     L  L       N  +   P     L+ L       N
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQEL---SVSDN 191

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             + S+P   S+L  L   N   +     +P+       L+ L ++GN L   +P     
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNRLTS----LPALPSG---LKELIVSGNRLT-SLPVLPSE 242

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L     + +  N    ++P     +     L +    L+  +P+ L +L+   ++ L  N
Sbjct: 243 L---KELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLS------GPIPESFADLKNLRLLSLMYNEMSGTV 250
            L+ +   +  R   + S       +          P     L       L+        
Sbjct: 295 PLS-ERTLQALR--EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

Query: 251 P----ESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLR 285
           P        Q  + +   ++ +  S +  EN  +++  +
Sbjct: 352 PADRWHMFGQEDNADAFSLFLDRLSET--ENFIKDAGFK 388

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 42/243 (17%), Positives = 76/243 (31%), Gaps = 52/243 (21%)

Query: 280 RNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLED 339
            N+    ++V  +    ++P  + +   +  L++  NN T SL         L  L +  
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPE---LRTLEVSG 90

Query: 340 NSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQT 399
           N  +  +P+    L +++                    S L    +  N +L   +P   
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGN-QLTS-LPV-- 138

Query: 400 WSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLAN 459
              P LQ  S S   +                         ++P   S   +L      N
Sbjct: 139 -LPPGLQELSVSDNQLA------------------------SLPALPSELCKL---WAYN 170

Query: 460 NKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKV 519
           N+L  S+P + + L     L +S N L+  +P        L   N     +       K 
Sbjct: 171 NQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKE 225

Query: 520 LRL 522
           L +
Sbjct: 226 LIV 228

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  121 bits (305), Expect = 3e-30
 Identities = 53/296 (17%), Positives = 104/296 (35%), Gaps = 86/296 (29%)

Query: 632 GITVSVKKIEWGATRIKIVSEF-ITRIGTVRHKNLIRLLGFC----YNRHQAYLLYDYLP 686
              V+VK       +    +E+ +  +  ++H+N+++ +G            +L+  +  
Sbjct: 47  NEYVAVKIFPIQDKQ-SWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHE 105

Query: 687 NGNLSEKIRTKR-DWAAKYKIVLGVARGLCFLHHDCY-------PAIPHGDLKASNIVFD 738
            G+LS+ ++     W     I   +ARGL +LH D         PAI H D+K+ N++  
Sbjct: 106 KGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLK 165

Query: 739 ENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEM----YM----------- 783
            N+   +A+FG             A     E+G+       ++    YM           
Sbjct: 166 NNLTACIADFGL------------ALK--FEAGKSAGDTHGQVGTRRYMAPEVLEGAINF 211

Query: 784 --------DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE--MYNENEVGSSSSLQ 833
                   D+Y  G ++ E+ +           +    DG + E  +  E E+G   SL+
Sbjct: 212 QRDAFLRIDMYAMGLVLWELAS-----------RCTAADGPVDEYMLPFEEEIGQHPSLE 260

Query: 834 DEIKLVL----------------------DVALLCTRSTPSDRPSMEEALKLLSGL 867
           D  ++V+                      +    C       R S     + ++ +
Sbjct: 261 DMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQM 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (309), Expect = 1e-29
 Identities = 64/308 (20%), Positives = 116/308 (37%), Gaps = 10/308 (3%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
              E   L+L  N        E  +   L  L+++ N  S   PG   +L NL  L   S
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 76  NSFSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE- 133
           N     +P  + + L +L  L+++ +     +   F    +L+ L +  N L   I    
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 134 LGMLKTVTHMEIGYNFYQGNIPWQ-LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLF 192
              L ++  + +       +IP + L ++  +  L +   N++         L +L+ L 
Sbjct: 148 FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 193 LFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE 252
           +        +         L SL ++   L+     +   L  LR L+L YN +S     
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 253 SLVQLPSLEILFIWNNYFSGSLPENLGRN-SKLRWVDVSTNNFNGSIPPDICSG-GVLFK 310
            L +L  L+ + +     +  +     R  + LR ++VS N    ++   +    G L  
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLET 324

Query: 311 LILFSNNF 318
           LIL SN  
Sbjct: 325 LILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (307), Expect = 2e-29
 Identities = 74/384 (19%), Positives = 138/384 (35%), Gaps = 70/384 (18%)

Query: 162 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 221
           ++ + +         ++P+ +   T+   L L +N++      EF+    L+ L+L++N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 222 LSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN 281
           +S   P +F +L NLR L L  N +          L +L  L I  N     L       
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 282 SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDN 340
             L+ ++V  N+    I     SG   L +L L   N T   + +LS+   L+ LRL   
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 341 SFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTW 400
           + +      F +L  +  +++S   +   +  +      L   ++++             
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC------------ 234

Query: 401 SLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANN 460
                                     +++ +             +V + V L  ++L+ N
Sbjct: 235 --------------------------NLTAVP----------YLAVRHLVYLRFLNLSYN 258

Query: 461 KLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG-- 517
             I +I   +L  L  L  + L    L+   P  F   + L VLNVS N ++ ++     
Sbjct: 259 P-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVF 316

Query: 518 ------KVLRLMGSSAYAGNPKLC 535
                 + L L        NP  C
Sbjct: 317 HSVGNLETLIL------DSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (296), Expect = 5e-28
 Identities = 65/334 (19%), Positives = 124/334 (37%), Gaps = 37/334 (11%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
           +VP  I      ++L+L  +        +F SF  LE L L  N+++  +          
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGA------ 75

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFRNQLA 199
                              N+  ++ L +    L   IP    + L+ L  L +  N++ 
Sbjct: 76  -----------------FNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

Query: 200 GQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP 258
             +    F  +  LKSL++ DN L      +F+ L +L  L+L    ++    E+L  L 
Sbjct: 118 -ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 259 SLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNF 318
            L +L + +   +     +  R  +L+ +++S   +  ++ P+   G  L  L +   N 
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 319 TGSLSP-SLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI-NQ 376
           T ++   ++ +   L  L L  N  S        +L  +  I L        +       
Sbjct: 237 T-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRG 294

Query: 377 ASKLEYFNVSNNPKLGGMIPAQT-WSLPSLQNFS 409
            + L   NVS N +L   +      S+ +L+   
Sbjct: 295 LNYLRVLNVSGN-QL-TTLEESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.4 bits (196), Expect = 2e-15
 Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 28/206 (13%)

Query: 20  LVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           L  L L   + +   P E   +L  LI L +   N +       + L  L VL+     +
Sbjct: 154 LEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
             ++        +L  L++     +            L FL+L+ N +   I   +    
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSM---- 267

Query: 139 TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFRNQ 197
                              L  +  +Q + + G  L+  +       L  L  L +  NQ
Sbjct: 268 -------------------LHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQ 307

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLS 223
           L       F  V  L++L L  N L+
Sbjct: 308 LTTLEESVFHSVGNLETLILDSNPLA 333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  123 bits (309), Expect = 2e-29
 Identities = 86/511 (16%), Positives = 178/511 (34%), Gaps = 53/511 (10%)

Query: 18  NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
           +E + ++ S N      P ++        L+IS+N  S  +   I SL  L +L    N 
Sbjct: 1   SEFL-VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR 56

Query: 78  FSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELG 135
               +   +    + L+ L+L+ +     I        +L+ L L+ N  +   I  E G
Sbjct: 57  IQ-YLDISVFKFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNL--TKLESLF 192
            +  +  + +     + +    + +++  + L + G         E L +     L  +F
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 193 LFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE 252
               +    +      V  L+  ++             + L  L+    + N        
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN-------- 224

Query: 253 SLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGG-----V 307
               L    I   WN++        L  ++ + +  +S     G +              
Sbjct: 225 ----LTLNNIETTWNSFIR---ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 308 LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFT 367
           L    + S+ F    S      S++       +       L  S++    ++D S N  T
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 368 GGIPTDINQASKLEYFNVSNN-----PKLGGMIPAQTWSLPSLQNFSASACNITGNLPP- 421
             +  +    ++LE   +  N      K+  M    T  + SLQ    S  +++ +    
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEM----TTQMKSLQQLDISQNSVSYDEKKG 393

Query: 422 -FKSCKSISVIESHMNNLSGT-IPESVSNC--VELERIDLANNKLIGSIPEVLARLPVLG 477
                KS+  +     N+S   + +++  C    ++ +DL +NK+  SIP+ + +L  L 
Sbjct: 394 DCSWTKSLLSL-----NMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQ 447

Query: 478 VLDLSHNSLSGQIPAKFGSCSSLTVLNVSFN 508
            L+++ N L       F   +SL  + +  N
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (272), Expect = 6e-25
 Identities = 70/393 (17%), Positives = 135/393 (34%), Gaps = 28/393 (7%)

Query: 20  LVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           L  L+LS N+F      + F N++ L  L +S  +        I  L    VL     ++
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 79  SGSVPAE---ISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
                 E       E L ++      F   +     +  +LE  ++   L +++    L 
Sbjct: 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 136 MLKTVTHMEIGYNFY--QGNIPW-------QLGNMSEVQYLDIAGANLSGSIPKEL---- 182
           +L  +       N         W       QL   + V Y  I+   L G +        
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 183 -SNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
            ++L  L    +  +       + +   + +   + + +          + +     L  
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG---RNSKLRWVDVSTNNFNGSI 298
             N ++ TV E+   L  LE L +  N     L +      +   L+ +D+S N+ +   
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 299 PPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDIN 357
               CS    L  L + SN  T ++   L     +  L L  N     IP +  +L  + 
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447

Query: 358 YIDLSRNGFTGGIPTDI-NQASKLEYFNVSNNP 389
            ++++ N     +P  I ++ + L+   +  NP
Sbjct: 448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 5e-24
 Identities = 69/377 (18%), Positives = 131/377 (34%), Gaps = 25/377 (6%)

Query: 162 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 221
            +   L+I+   +S     ++ +L+KL  L +  N++       F     L+ LDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 222 LSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV--QLPSLEILFIWNNYFSGSLPENLG 279
           L      S     NL+ L L +N     +P       +  L+ L +   +   S    + 
Sbjct: 81  LVKI---SCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 280 RNSKLRWVDVSTNNFNGSIPPD---ICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR 336
             +  + + V    +     P+     +   L  +   +  F   L  S+   ++L    
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 337 LEDNSFSGEIPLKFSQLPDINY------IDLSRNGFTGGIPTDINQ---ASKLEYFNVSN 387
           ++      +     S L  +        + L+    T      I Q    + + YF++SN
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 388 NPKLG-GMIPAQTWSLPSLQNFSAS--ACNITGNLPP--FKSCKSISVIESHMNNLSGTI 442
               G        +S  SL+  S      ++ G      ++   ++++    ++      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 443 PESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLS--GQIPAKFGSCSSL 500
               S       +D +NN L  ++ E    L  L  L L  N L    +I        SL
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 501 TVLNVSFNDISGSIPSG 517
             L++S N +S     G
Sbjct: 377 QQLDISQNSVSYDEKKG 393

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 13/165 (7%)

Query: 357 NYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT 416
             +D S+NG    +P D+  + K    N+S N  +  +  +   SL  L+    S   I 
Sbjct: 3   FLVDRSKNGLIH-VPKDL--SQKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQ 58

Query: 417 GNLPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPE--VLAR 472
             L    FK  + +  ++   N L         N   L+ +DL+ N    ++P       
Sbjct: 59  -YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAF-DALPICKEFGN 113

Query: 473 LPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
           +  L  L LS   L           +   VL V            
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (271), Expect = 5e-26
 Identities = 57/279 (20%), Positives = 101/279 (36%), Gaps = 35/279 (12%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN--SFSG 80
           +  +    +   P  I   +S   L++  N       G    L  L  L   SN  SF G
Sbjct: 12  IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
                      LK L+L+ +     + S F   + LE L    + L  Q+  E  +    
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMS-EFSVFL-- 123

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFRNQLA 199
                              ++  + YLDI+  +          + L+ LE L +  N   
Sbjct: 124 -------------------SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 200 GQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP 258
                + F+ +  L  LDLS  +L    P +F  L +L++L++ +N            L 
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 259 SLEILFIWNNYFSGSLPENL--GRNSKLRWVDVSTNNFN 295
           SL++L    N+   +  +       S L +++++ N+F 
Sbjct: 224 SLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 1e-23
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 12/236 (5%)

Query: 162 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQ--VPWEFSRVTTLKSLDLSD 219
           S    L++    L          LT+L  L L  N L+ +          T+LK LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL-VQLPSLEILFIWNNYFSGSLPENL 278
           N +   +  +F  L+ L  L   ++ +      S+ + L +L  L I + +        +
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

Query: 279 GRN-SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNC-SSLVRL 335
               S L  + ++ N+F  +  PDI +    L  L L        LSP+  N  SSL  L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL 204

Query: 336 RLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI--NQASKLEYFNVSNNP 389
            +  N+F       +  L  +  +D S N            +  S L + N++ N 
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.8 bits (226), Expect = 5e-20
 Identities = 52/255 (20%), Positives = 88/255 (34%), Gaps = 56/255 (21%)

Query: 20  LVDLNLSHN--SFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
           L  L+LS N  SF G      F  TSL  LD+S N            L  L  LD   + 
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS- 111

Query: 78  FSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 137
                      L+ +               S F S ++L +L ++           +   
Sbjct: 112 ----------NLKQM------------SEFSVFLSLRNLIYLDISHTHTR-VAFNGI--- 145

Query: 138 KTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFRN 196
                                  +S ++ L +AG +   +   +  + L  L  L L + 
Sbjct: 146 --------------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 197 QLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           QL  Q+    F+ +++L+ L++S N         +  L +L++L    N +  T  +  +
Sbjct: 186 QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243

Query: 256 Q--LPSLEILFIWNN 268
           Q    SL  L +  N
Sbjct: 244 QHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 57/266 (21%), Positives = 97/266 (36%), Gaps = 20/266 (7%)

Query: 287 VDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPS-LSNCSSLVRLRLEDN--SFS 343
           +  ++     S+P  I S     +L L SN    SL        + L +L L  N  SF 
Sbjct: 12  IRCNSKGLT-SVPTGIPSS--ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 344 GEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQT-WSL 402
           G           + Y+DLS NG    + ++     +LE+ +  ++  L  M       SL
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSL 125

Query: 403 PSLQNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLAN 459
            +L     S  +         F    S+ V++   N+        + +    L  +DL+ 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 460 NKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGK 518
            + +  +       L  L VL++SHN+        +   +SL VL+ S N I  +    +
Sbjct: 185 CQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE 242

Query: 519 VLRLMGSSAY---AGNPKLCGAPLQP 541
           +     S A+     N   C    Q 
Sbjct: 243 LQHFPSSLAFLNLTQNDFACTCEHQS 268

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  108 bits (271), Expect = 8e-26
 Identities = 53/288 (18%), Positives = 99/288 (34%), Gaps = 59/288 (20%)

Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCY-----NRHQAYLLYDYLP 686
              V+VK   +   +  I  + I R+  + H N+ R +          R +  L+ +Y P
Sbjct: 36  ERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYP 95

Query: 687 NGNLSEKIRTKR-DWAAKYKIVLGVARGLCFLHHD------CYPAIPHGDLKASNIVFDE 739
           NG+L + +     DW +  ++   V RGL +LH +        PAI H DL + N++   
Sbjct: 96  NGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKN 155

Query: 740 NMEPHLAEFGF-------KYLTQLADGSFPAKIAWT----------ESGEFYNAMKEEMY 782
           +    +++FG        + +    + +       T           +    +       
Sbjct: 156 DGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQ 215

Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL-- 840
           +D+Y  G I  EI    R T+               +M  + EVG+  + +D   LV   
Sbjct: 216 VDMYALGLIYWEIFM--RCTDLFPGESVPEY-----QMAFQTEVGNHPTFEDMQVLVSRE 268

Query: 841 ---------------------DVALLCTRSTPSDRPSMEEALKLLSGL 867
                                +    C       R + + A + ++ L
Sbjct: 269 KQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAEL 316

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  108 bits (271), Expect = 6e-25
 Identities = 73/391 (18%), Positives = 136/391 (34%), Gaps = 37/391 (9%)

Query: 139 TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQ 197
            V ++++  N            + ++Q+L +        I       L+ L  L L  NQ
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRL-SGPIPE-SFADLKNLRLLSLMYNEMSGTVPESL- 254
                   F+ +  L+ L L+   L    +    F  L +L +L L  N +    P S  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 255 VQLPSLEILFIWNNYFSGSLPENL---GRNSKLRWVDVSTNNFNGSIPPDICSG--GVLF 309
           + +    +L +  N    S+ E      +      + +S+          +     G  F
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 310 KLI------LFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSR 363
           K        L  N F  S++    +  +  +++    S S       S     N+ D   
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS---YNMGSSFGHTNFKDPDN 266

Query: 364 NGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWS-LPSLQNFSASACNITGNLPP- 421
             F G       +AS ++  ++S + K+   +    +S    L+  + +   I   +   
Sbjct: 267 FTFKG------LEASGVKTCDLSKS-KIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDN 317

Query: 422 -FKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSIPE-VLARLPVLGV 478
            F     +  +    N L  +I   +  N  +LE +DL+ N  I ++ +     LP L  
Sbjct: 318 AFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKE 375

Query: 479 LDLSHNSLSGQIPAK-FGSCSSLTVLNVSFN 508
           L L  N L   +P   F   +SL  + +  N
Sbjct: 376 LALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (255), Expect = 6e-23
 Identities = 61/343 (17%), Positives = 123/343 (35%), Gaps = 42/343 (12%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE-SLVQLPSLEILFIWNN 268
             +  +DLS N ++     SF+ L++L+ L +        +   +   L SL IL +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 269 YFSGSLPEN-LGRNSKLRWVDVSTNNFNGS-IPPDICSGGV-LFKLILFSNNFTGSLSPS 325
            F   L        + L  + ++  N +G+ +  +       L  L+L  NN    + P+
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPA 147

Query: 326 --LSNCSSLVRLRLEDNSFS----------GEIPLKFSQLPDINYIDLSRNGFTGGIPTD 373
               N      L L  N                     +L  I   D++          +
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 374 INQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIES 433
             + + +   ++S N      +  + +   +     +   + + N+       +    ++
Sbjct: 208 PFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 434 ----------------HMNNLSGTIPESV-SNCVELERIDLANNKLIGSIPE-VLARLPV 475
                             + +   + +SV S+  +LE++ LA N+ I  I +     L  
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTH 324

Query: 476 LGVLDLSHNSLSGQIPAK-FGSCSSLTVLNVSFNDISGSIPSG 517
           L  L+LS N L   I ++ F +   L VL++S+N I  ++   
Sbjct: 325 LLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIR-ALGDQ 365

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 76/357 (21%), Positives = 131/357 (36%), Gaps = 37/357 (10%)

Query: 19  ELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
           +L  L +   +         F  L+SLI L +  N F     G    L NL VL     +
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114

Query: 78  F-SGSVPAEI-SQLEHLKVLNLAGSYFSGPIP-SQFGSFKSLEFLHLAGNLLNDQIPAEL 134
                +       L  L++L L  +      P S F + +    L L  N +   I  E 
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEED 173

Query: 135 ---GMLKTVTHMEIGYNFYQGNIPWQLG--------NMSEVQYLDIAGANLSGSIPKELS 183
                 K  T + +     Q    + LG          + +  LD++G     S+ K   
Sbjct: 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 184 NL---TKLESLFLFRNQLAGQ----------VPWEFSR--VTTLKSLDLSDNRLSGPIPE 228
           +    TK++SL L  +   G             + F     + +K+ DLS +++   +  
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293

Query: 229 SFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN-SKLRWV 287
            F+   +L  L+L  NE++     +   L  L  L +  N+   S+   +  N  KL  +
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVL 352

Query: 288 DVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSPS-LSNCSSLVRLRLEDNSF 342
           D+S N+   ++      G   L +L L +N    S+        +SL ++ L  N +
Sbjct: 353 DLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 1e-24
 Identities = 59/283 (20%), Positives = 101/283 (35%), Gaps = 36/283 (12%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
            N+   +  +    S + P  I   ++   L++  NN         + L +L VL    N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 77  SFSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQ-FGSFKSLEFLHLAGNLLNDQIPAEL 134
           S    +     + L  L  L L  ++ +  IPS  F     L  L L  N +   IP+  
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 135 GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFL 193
                                     +  +  LD+        I +     L  L+ L L
Sbjct: 167 -----------------------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES 253
               +   +P   + +  L+ L++S N      P SF  L +L+ L +M +++S     +
Sbjct: 204 GMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 254 LVQLPSLEILFIWNNYFSGSLPEN-LGRNSKLRWVDVSTNNFN 295
              L SL  L + +N  S SLP +       L  + +  N +N
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 11/251 (4%)

Query: 162 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 221
           ++   +      LS  +P+ +   +    L L  N +       F  +  L+ L L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 222 LSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN 281
           +      +F  L +L  L L  N ++     +   L  L  L++ NN    S+P      
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNR 169

Query: 282 -SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLED 339
              L  +D+        I      G   L  L L   N    + P+L+    L  L +  
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM-PNLTPLVGLEELEMSG 227

Query: 340 NSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQT 399
           N F    P  F  L  +  + +  +  +       +  + L   N+++N  L   +P   
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NL-SSLPHDL 285

Query: 400 W-SLPSLQNFS 409
           +  L  L    
Sbjct: 286 FTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 60/276 (21%), Positives = 108/276 (39%), Gaps = 33/276 (11%)

Query: 281 NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDN 340
           +++   V  +    +  +P  I S      L L  NN     + +  +   L  L+L  N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 341 SFSGEIPLK-FSQLPDINYIDLSRNGFTGGIPTDI-NQASKLEYFNVSNNPKLGGMIPAQ 398
           S   +I +  F+ L  +N ++L  N  T  IP+      SKL    + NN  +   IP+ 
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNN-PIE-SIPSY 165

Query: 399 TWS-LPSLQNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERI 455
            ++ +PSL             +    F+   ++  +   M N+   +P +++  V LE +
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEEL 223

Query: 456 DLANNKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPAK-FGSCSSLTVLNVSFNDISGS 513
           +++ N     I       L  L  L + ++ +S  I    F   +SL  LN++ N++S S
Sbjct: 224 EMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-S 280

Query: 514 IPSG--------KVLRLMGSSAYAGNPKLCGAPLQP 541
           +P            L L        NP  C   +  
Sbjct: 281 LPHDLFTPLRYLVELHL------HHNPWNCDCDILW 310

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (263), Expect = 4e-24
 Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 36/283 (12%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
            N+   +     +   + P  I   T+   L++  N          + LR+L +L    N
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 77  SFSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQ-FGSFKSLEFLHLAGNLLNDQIPAEL 134
               ++     + L +L  L L  +  +  IP+  F     L+ L L  N +   IP+  
Sbjct: 99  HIR-TIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 135 GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFL 193
                                     +  ++ LD+        I +     L+ L  L L
Sbjct: 156 -----------------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES 253
               L  ++P   + +  L  LDLS N LS   P SF  L +L+ L ++ +++      +
Sbjct: 193 AMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 254 LVQLPSLEILFIWNNYFSGSLPEN-LGRNSKLRWVDVSTNNFN 295
              L SL  + + +N  +  LP +       L  + +  N +N
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (260), Expect = 1e-23
 Identities = 60/255 (23%), Positives = 95/255 (37%), Gaps = 29/255 (11%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAF 74
                  LNL  N       V  F +L  L  L +SRN+      G    L NL  L+ F
Sbjct: 62  ISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 75  SNSFSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
            N  + ++P      L  LK L L  +         F    SL  L L        I   
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 134 LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFL 193
                                      +S ++YL++A  NL   IP  L+ L KL+ L L
Sbjct: 180 A-----------------------FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214

Query: 194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES 253
             N L+   P  F  +  L+ L +  +++      +F +L++L  ++L +N ++    + 
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 254 LVQLPSLEILFIWNN 268
              L  LE + + +N
Sbjct: 275 FTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 67/328 (20%), Positives = 103/328 (31%), Gaps = 82/328 (25%)

Query: 162 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 221
           ++   +     NL   +P  +S  T    L L  NQ+       F  +  L+ L LS N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 222 LSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN 281
           +      +F  L NL  L L  N ++     + V L  L+ L++ NN    S+P      
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 282 -SKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDN 340
              LR +D+        I                          +    S+L  L L   
Sbjct: 159 IPSLRRLDLGELKRLSYISEG-----------------------AFEGLSNLRYLNLAMC 195

Query: 341 SFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQT- 399
           +   EIP   + L  ++ +DLS N  +                           I   + 
Sbjct: 196 NLR-EIP-NLTPLIKLDELDLSGNHLS--------------------------AIRPGSF 227

Query: 400 WSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLAN 459
             L  LQ        +  +         I VIE            +  N   L  I+LA+
Sbjct: 228 QGLMHLQKLW-----MIQS--------QIQVIE----------RNAFDNLQSLVEINLAH 264

Query: 460 NKLIGSIPE-VLARLPVLGVLDLSHNSL 486
           N L   +P  +   L  L  + L HN  
Sbjct: 265 NNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 60/343 (17%), Positives = 118/343 (34%), Gaps = 82/343 (23%)

Query: 169 IAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE 228
           +A    + + P   S   +   +   R  L  +VP   S  T  + L+L +N++      
Sbjct: 26  VAETGSAQTCPSVCSCSNQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVN 82

Query: 229 SFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN-SKLRWV 287
           SF  L++L +L L  N +      +   L +L  L +++N  + ++P       SKL+ +
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141

Query: 288 DVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIP 347
            +  N    SIP                         + +   SL RL L +        
Sbjct: 142 WLRNNPIE-SIPSY-----------------------AFNRIPSLRRLDLGEL------- 170

Query: 348 LKFSQLPDINYID-LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQ 406
                      +  +S   F G                                 L +L+
Sbjct: 171 ---------KRLSYISEGAFEG---------------------------------LSNLR 188

Query: 407 NFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSI 466
             + + CN+   +P       +  ++   N+LS   P S    + L+++ +  +++    
Sbjct: 189 YLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 467 PEVLARLPVLGVLDLSHNSLSGQIPAK-FGSCSSLTVLNVSFN 508
                 L  L  ++L+HN+L+  +P   F     L  +++  N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.6 bits (181), Expect = 7e-14
 Identities = 48/194 (24%), Positives = 68/194 (35%), Gaps = 14/194 (7%)

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI-NQASKLEYFNVSNN 388
           ++   L L +N         F  L  +  + LSRN     I     N  + L    + +N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDN 122

Query: 389 PKLGGMIPAQT-WSLPSLQNFSASACNITGNLPP--FKSCKSISVIE-SHMNNLSGTIPE 444
            +L   IP      L  L+        I  ++P   F    S+  ++   +  LS  I E
Sbjct: 123 -RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISE 178

Query: 445 SV-SNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVL 503
                   L  ++LA   L   IP  L  L  L  LDLS N LS   P  F     L  L
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 504 NVSFNDISGSIPSG 517
            +  + I   I   
Sbjct: 237 WMIQSQIQ-VIERN 249

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (264), Expect = 8e-24
 Identities = 60/346 (17%), Positives = 110/346 (31%), Gaps = 64/346 (18%)

Query: 18  NELVDL--NLSHNSFSGQFPVEIF----NLTSLISLDISRNNFSGHFPGGIQSLRNLLVL 71
           N    L  N  +N+ SG    + F              +RN         +  +     L
Sbjct: 8   NNNFSLSQNSFYNTISGT-YADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSEL 64

Query: 72  DAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP 131
                + S S+P  +     + VL +  +     +P       SLE+L    N L+  +P
Sbjct: 65  QLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLP 116

Query: 132 AELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESL 191
                L                           ++LD+    L+  +P+  + L  +   
Sbjct: 117 ELPASL---------------------------KHLDVDNNQLT-MLPELPALLEYIN-- 146

Query: 192 FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVP 251
               NQL   +P      T+L+ L + +N+L+  +PE     ++L  L +  N +  ++P
Sbjct: 147 -ADNNQL-TMLP---ELPTSLEVLSVRNNQLTF-LPEL---PESLEALDVSTNLLE-SLP 196

Query: 252 ESLVQLPSLEILFIW----NNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV 307
              V+    E   I+     N  +  +PEN+        + +  N  + S   +  S   
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQT 254

Query: 308 LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQL 353
                     +  S+S    N             F        SQ+
Sbjct: 255 AQPDYHGPRIYF-SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (250), Expect = 4e-22
 Identities = 51/268 (19%), Positives = 92/268 (34%), Gaps = 53/268 (19%)

Query: 8   LPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRN 67
                     N+  +L L+  + S   P  +     +  L+I++N      P   +   +
Sbjct: 49  AVSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLP---ELPAS 101

Query: 68  LLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLN 127
           L  LDA  N  S ++P   + L+H   L++  +  +  +P        LE+++   N L 
Sbjct: 102 LEYLDACDNRLS-TLPELPASLKH---LDVDNNQLTM-LPELPA---LLEYINADNNQLT 153

Query: 128 DQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTK 187
             +P     L                           + L +    L+  +P+   +L  
Sbjct: 154 -MLPELPTSL---------------------------EVLSVRNNQLT-FLPELPESLEA 184

Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKS----LDLSDNRLSGPIPESFADLKNLRLLSLMY 243
              L +  N L   +P    R    +         +NR++  IPE+   L     + L  
Sbjct: 185 ---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILED 239

Query: 244 NEMSGTVPESLVQLPSLEILFIWNNYFS 271
           N +S  + ESL Q  +         YFS
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.9 bits (233), Expect = 5e-20
 Identities = 63/325 (19%), Positives = 106/325 (32%), Gaps = 83/325 (25%)

Query: 214 SLDLSDNRLSGPIPESFA---DLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
           S +   N +SG   + F+     +   L     NE    + E L  +     L +     
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71

Query: 271 SGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCS 330
           S SLP+NL     +  ++++ N    S+P    S   L  L    N  + +L    ++  
Sbjct: 72  S-SLPDNLPPQ--ITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS-TLPELPAS-- 121

Query: 331 SLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPK 390
            L  L +++N        + + LP+                      + LEY N  NN +
Sbjct: 122 -LKHLDVDNN--------QLTMLPE--------------------LPALLEYINADNN-Q 151

Query: 391 LGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCV 450
           L  M+P       SL+  S     +T                         +PE   +  
Sbjct: 152 LT-MLPE---LPTSLEVLSVRNNQLT------------------------FLPELPES-- 181

Query: 451 ELERIDLANNKLIGSIPEVLARLP----VLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVS 506
            LE +D++ N L  S+P V  R               N ++  IP    S      + + 
Sbjct: 182 -LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 507 FNDISGSIPSGKVLRLMGSSAYAGN 531
            N +S S     + +      Y G 
Sbjct: 239 DNPLS-SRIRESLSQQTAQPDYHGP 262

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 99.6 bits (249), Expect = 2e-23
 Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 48/261 (18%)

Query: 632 GITVSVKKIEWGATRIKIVSEF---ITRIGTVRHKNLIRLLGFCYNRHQAYL--LYDYLP 686
           G  + VK ++      +   +F     R+    H N++ +LG C +    +   +  ++P
Sbjct: 33  GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMP 92

Query: 687 NGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
            G+L   +        D +   K  L +ARG+ FLH    P IP   L + +++ DE+M 
Sbjct: 93  YGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDMT 151

Query: 743 PHLAEFGFKYLTQLADGSFPAKIAWT--E--SGEFYNAMKEEMYMDVYGFGEIIL-EILT 797
             ++    K+  Q     +    AW   E    +  +  +     D++ F  ++L E++T
Sbjct: 152 ARISMADVKFSFQSPGRMYA--PAWVAPEALQKKPEDTNRRS--ADMWSFA-VLLWELVT 206

Query: 798 NGRLTNAGSSLQNKPIDGL-----LGEMYNENE-----VGSSSSLQDEIKLVLDVALLCT 847
                         P   L       ++  E        G S  +   +K       +C 
Sbjct: 207 R-----------EVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMK-------ICM 248

Query: 848 RSTPSDRPSMEEALKLLSGLK 868
              P+ RP  +  + +L  ++
Sbjct: 249 NEDPAKRPKFDMIVPILEKMQ 269

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (251), Expect = 4e-23
 Identities = 62/316 (19%), Positives = 106/316 (33%), Gaps = 44/316 (13%)

Query: 12  PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVL 71
           P  I  +    L+L +N  S     +   L  L +L +  N  S         LR L  L
Sbjct: 49  PKEISPD-TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107

Query: 72  DAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP 131
               N     +P  +     L  L +  +         F   +++  + + GN L     
Sbjct: 108 YISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL----- 159

Query: 132 AELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESL 191
                     +       + G          ++ YL I+ A L+  IPK+L     L  L
Sbjct: 160 ---------ENSGFEPGAFDG---------LKLNYLRISEAKLT-GIPKDL--PETLNEL 198

Query: 192 FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVP 251
            L  N++      +  R + L  L L  N++      S + L  LR L L  N++S  VP
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 252 ESLVQLPSLEILFIWNNYFSGSLPEN-------LGRNSKLRWVDVSTNNF-NGSIPPDIC 303
             L  L  L+++++  N  +  +  N         + +    + +  N      + P   
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 304 SGGVLFKL--ILFSNN 317
               +     I F N 
Sbjct: 317 RC--VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 54/304 (17%), Positives = 97/304 (31%), Gaps = 30/304 (9%)

Query: 162 SEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR 221
            +   LD+   ++S     +   L  L +L L  N+++      FS +  L+ L +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 222 LSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFI-WNNYFSGSLPENLGR 280
           L   IP +     +L  L +  N +          L ++  + +  N   +         
Sbjct: 114 LVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 281 NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSP-SLSNCSSLVRLRLED 339
             KL ++ +S       IP D+     L +L L  N    ++    L   S L RL L  
Sbjct: 171 GLKLNYLRISEAKLT-GIPKDLPET--LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGH 226

Query: 340 NSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQT 399
           N          S LP +  + L  N  +  +P  +     L+   +  N           
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNN---------- 275

Query: 400 WSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLS-GTIPESVSNCV-ELERIDL 457
                +     +       +         + I    N +    +  +   CV +   I  
Sbjct: 276 -----ITKVGVNDFC---PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 458 ANNK 461
            N K
Sbjct: 328 GNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 71/342 (20%), Positives = 111/342 (32%), Gaps = 74/342 (21%)

Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 247
           L  +      L   VP E S  TT   LDL +N +S    + F  L++L  L L+ N++S
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDTT--LLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 248 GTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV 307
               ++   L  L+ L+I  N               L             IPP+      
Sbjct: 92  KIHEKAFSPLRKLQKLYISKN--------------HLV-----------EIPPN------ 120

Query: 308 LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFT 367
           L                      SLV LR+ DN         FS L ++N I++  N   
Sbjct: 121 LPS--------------------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 368 -GGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP--FKS 424
             G         KL Y  +S   KL   IP       +L         I   +       
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEA-KL-TGIPKDL--PETLNELHLDHNKIQ-AIELEDLLR 215

Query: 425 CKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSH 483
              +  +    N +   I     S    L  + L NNKL   +P  L  L +L V+ L  
Sbjct: 216 YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 484 NSLSGQIPAK-------FGSCSSLTVLNVSFNDIS-GSIPSG 517
           N+++ ++              +    +++  N +    +   
Sbjct: 274 NNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 55/303 (18%), Positives = 107/303 (35%), Gaps = 24/303 (7%)

Query: 115 SLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL 174
            L  +  +   L   +P E+      T +++  N            +  +  L +    +
Sbjct: 34  HLRVVQCSDLGL-KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 175 SGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLK 234
           S    K  S L KL+ L++ +N L  ++P       +L  L + DNR+       F+ L+
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLR 147

Query: 235 NLRLLSLMYNE-MSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNN 293
           N+  + +  N   +            L  L I     +  +P++L     L  + +  N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPET--LNELHLDHNK 204

Query: 294 FNGSIPPDICSG-GVLFKLILFSNNFTGSLSP-SLSNCSSLVRLRLEDNSFSGEIPLKFS 351
              +I  +       L++L L  N     +   SLS   +L  L L++N  S  +P    
Sbjct: 205 IQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

Query: 352 QLPDINYIDLSRNGFTGGIPTDI-------NQASKLEYFNVSNNPKLGGMIPAQTWS-LP 403
            L  +  + L  N  T  +  +         + +     ++ NNP     +   T+  + 
Sbjct: 262 DLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 404 SLQ 406
              
Sbjct: 321 DRL 323

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 21/218 (9%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNF-SGHFPGGIQSLRNLLVLDAF 74
            + LV+L +  N    + P  +F  L ++  +++  N   +  F  G      L  L   
Sbjct: 122 PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 75  SNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQ-FGSFKSLEFLHLAGNLLNDQIPAE 133
               +  +P ++   E L  L+L  +     I  +    +  L  L L  N +   I   
Sbjct: 181 EAKLT-GIPKDL--PETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRM-IENG 235

Query: 134 -LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-------LSNL 185
            L  L T+  + +  N     +P  L ++  +Q + +   N++  +              
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 186 TKLESLFLFRNQLAGQV--PWEFSRVTTLKSLDLSDNR 221
                + LF N +      P  F  VT   ++   + +
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (250), Expect = 5e-23
 Identities = 63/331 (19%), Positives = 112/331 (33%), Gaps = 42/331 (12%)

Query: 43  SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYF 102
            L  +  S        P  +    +  +LD  +N  +     +   L++L  L L  +  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 103 SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNI----PWQL 158
           S   P  F     LE L+L+ N L  ++P    M KT+  + +  N     I        
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQL-KELPE--KMPKTLQELRVHEN----EITKVRKSVF 141

Query: 159 GNMSEVQYLDIAGANL-SGSIPKE-LSNLTKLESLFLFRNQLAGQVPWE-FSRVTTLKSL 215
             ++++  +++    L S  I       + KL  + +    +   +P        +L  L
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP---SLTEL 197

Query: 216 DLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLP 275
            L  N+++     S   L NL  L L +N +S     SL   P L  L + NN     +P
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 276 ENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRL 335
             L  +  ++ V +  NN + +I  +                         +  +S   +
Sbjct: 257 GGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYN-----------------TKKASYSGV 298

Query: 336 RLEDNSFS-GEIPLK-FSQLPDINYIDLSRN 364
            L  N     EI    F  +     + L   
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.1 bits (245), Expect = 3e-22
 Identities = 55/286 (19%), Positives = 96/286 (33%), Gaps = 47/286 (16%)

Query: 20  LVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           L  L L +N  S +     F  L  L  L +S+N      P  +   + L  L    N  
Sbjct: 78  LHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEI 133

Query: 79  SGSVPAEI-SQLEHLKVLNLAG-SYFSGPIPSQ-FGSFKSLEFLHLAGNLLNDQIPAELG 135
           +  V   + + L  + V+ L      S  I +  F   K L ++ +A   +   IP  L 
Sbjct: 134 T-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL- 190

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLF 194
                              P  L        L + G  ++  +    L  L  L  L L 
Sbjct: 191 -------------------PPSL------TELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG------ 248
            N ++       +    L+ L L++N+L   +P   AD K ++++ L  N +S       
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 249 TVPESLVQLPSLEILFIWNNYFS-GSLPENLGRN-SKLRWVDVSTN 292
             P    +  S   + +++N      +  +  R       V +   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 8e-22
 Identities = 66/309 (21%), Positives = 115/309 (37%), Gaps = 24/309 (7%)

Query: 165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 224
           + +  +   L   +PK+L   T    L L  N++      +F  +  L +L L +N++S 
Sbjct: 34  RVVQCSDLGLE-KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 225 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKL 284
             P +FA L  L  L L  N++   +PE +    +L+ L +  N  +          +++
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 285 RWVDVSTNNF-NGSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSF 342
             V++ TN   +  I      G   L  + +   N T ++   L    SL  L L+ N  
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKI 204

Query: 343 SGEIPLK-FSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWS 401
           + ++       L ++  + LS N  +      +     L   +++NN KL   +P     
Sbjct: 205 T-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV-KVPGGLAD 261

Query: 402 LPSLQ-------NFSASACNITGNLPPFKSCKSISVIESHMNNLSGT-IPESVSNCVE-L 452
              +Q       N SA   N            S S +    N +    I  S   CV   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 453 ERIDLANNK 461
             + L N K
Sbjct: 322 AAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 65/339 (19%), Positives = 122/339 (35%), Gaps = 67/339 (19%)

Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS 247
           L  +      L  +VP +    T    LDL +N+++      F +LKNL  L L+ N++S
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 248 GTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV 307
              P +   L  LE L++  N     LPE + +   L+ + V  N     +         
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEIT-KVRKS------ 139

Query: 308 LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSF-SGEIPLK-FSQLPDINYIDLSRNG 365
                              +  + ++ + L  N   S  I    F  +  ++YI ++   
Sbjct: 140 -----------------VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 366 FTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSC 425
            T  IP  +     L   ++  N                +    A++          K  
Sbjct: 183 IT-TIPQGL--PPSLTELHLDGN---------------KITKVDAAS---------LKGL 215

Query: 426 KSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNS 485
            +++ +    N++S     S++N   L  + L NNKL+  +P  LA    + V+ L +N+
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274

Query: 486 LSG------QIPAKFGSCSSLTVLNVSFNDIS-GSIPSG 517
           +S         P      +S + +++  N +    I   
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 20/261 (7%)

Query: 157 QLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLD 216
              N+  +  L +    +S   P   + L KLE L+L +NQL  ++P +  +  TL+ L 
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELR 127

Query: 217 LSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTV--PESLVQLPSLEILFIWNNYFSGSL 274
           + +N ++      F  L  + ++ L  N +  +     +   +  L  + I +   + ++
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186

Query: 275 PENLGRNSKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSP-SLSNCSSL 332
           P+ L  +  L  + +  N     +      G   L KL L  N+ + ++   SL+N   L
Sbjct: 187 PQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHL 242

Query: 333 VRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG------GIPTDINQASKLEYFNVS 386
             L L +N    ++P   +    I  + L  N  +         P    + +     ++ 
Sbjct: 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 387 NNPKLGGMIPAQTWS-LPSLQ 406
           +NP     I   T+  +    
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.0 bits (203), Expect = 6e-17
 Identities = 45/262 (17%), Positives = 90/262 (34%), Gaps = 62/262 (23%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
              L +L +  N  + +    +F  L  +I +++  N        GI++        AF 
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK---SSGIEN-------GAFQ 168

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
                        ++ L  + +A +  +  IP   G   SL  LHL GN +  ++ A   
Sbjct: 169 G------------MKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKIT-KVDAAS- 211

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLF 194
                                 L  ++ +  L ++  ++S ++    L+N   L  L L 
Sbjct: 212 ----------------------LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLN 248

Query: 195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSG------PIPESFADLKNLRLLSLMYNEMSG 248
            N+L  +VP   +    ++ + L +N +S         P       +   +SL  N +  
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 249 TV--PESLVQLPSLEILFIWNN 268
               P +   +     + + N 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 39/207 (18%), Positives = 69/207 (33%), Gaps = 28/207 (13%)

Query: 20  LVDLNLSHNSF-SGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
           ++ + L  N   S       F  +  L  + I+  N +   P G+    +L  L    N 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK 203

Query: 78  FSGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
            +  V A     L +L  L L+ +  S        +   L  LHL  N L  ++P  L  
Sbjct: 204 IT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLAD 261

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
            K +  + +  N           N+S +   D          P   +       + LF N
Sbjct: 262 HKYIQVVYLHNN-----------NISAIGSNDFCP-------PGYNTKKASYSGVSLFSN 303

Query: 197 QL-AGQVPWE-FSRVTTLKSLDLSDNR 221
            +   ++    F  V    ++ L + +
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.8 bits (246), Expect = 1e-21
 Identities = 89/503 (17%), Positives = 162/503 (32%), Gaps = 69/503 (13%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGI-QSLRNLLVLDAFSNSFSGS 81
           L+LS NS S     +I  L+ L  L +S N         +    ++L  LD   N    +
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 82  VPAEISQLEHLKVLNLAG-SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
           +      +  L+ L+L+   +   P+  +FG+   L FL L+           +  L   
Sbjct: 115 ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG 200
                                     LD+   ++ G   + L        L L  +  + 
Sbjct: 173 CI-----------------------LLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSL 208

Query: 201 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADL-----KNLRLLSLMYNEMSGTVPE--- 252
                   V  L  L LS+ +L+    +          +   LL++    +  T      
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 253 --SLVQLPSLEILFIWNNYFSGSLPENLGRNSK-----LRWVDVSTNNFNGSIPPDICSG 305
                    +E L I+N   +  +       S+     L    V    F  S        
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 306 GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNG 365
             +   +L  ++          + SS   L    N F+  +    S L  +  + L RNG
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 366 FTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSC 425
                         +      +                SL + ++ A + T         
Sbjct: 389 LKN-FFKVALMTKNMSSLETLDV---------------SLNSLNSHAYDRTCAWA----- 427

Query: 426 KSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNS 485
           +SI V+    N L+G++   +    +++ +DL NN++  SIP+ +  L  L  L+++ N 
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQ 484

Query: 486 LSGQIPAKFGSCSSLTVLNVSFN 508
           L       F   +SL  + +  N
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.1 bits (239), Expect = 9e-21
 Identities = 77/391 (19%), Positives = 133/391 (34%), Gaps = 26/391 (6%)

Query: 20  LVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           L  L+LS N F      + F NLT L  L +S   F       +  L    +L    +  
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 79  SGSVPAEISQLEHLKVLNLAGSY---FSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
                 E  Q+ +  VL+L       FS  +     +   L+  ++  N  N Q      
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 136 MLKTVTHMEIGYNFYQGNIPW-------QLGNMSEVQYLDIAGANLSGSIPKELSNLTKL 188
              T     +          W       Q      V+YL+I    ++  I +E    ++ 
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 189 ESLFLFRNQLAGQV-----PWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMY 243
               L    +  QV        +S    +    LS +              +   L+   
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 244 NEMSGTVPESLVQLPSLEILFIWNNYFSGSLPE---NLGRNSKLRWVDVSTNNFNGSIPP 300
           N  + +V +    L  L+ L +  N    +  +        S L  +DVS N+ N     
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421

Query: 301 DICSG-GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYI 359
             C+    +  L L SN  TGS+   L     +  L L +N     IP   + L  +  +
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478

Query: 360 DLSRNGFTGGIPTDI-NQASKLEYFNVSNNP 389
           +++ N     +P  + ++ + L+Y  + +NP
Sbjct: 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.6 bits (230), Expect = 1e-19
 Identities = 98/496 (19%), Positives = 170/496 (34%), Gaps = 57/496 (11%)

Query: 43  SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYF 102
               +D S  N + H P  +        L    NS S     +IS L  L+VL L+ +  
Sbjct: 32  LESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 103 SGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMS 162
                  F   + LE+L ++ N L + I      + ++ H+++ +N +            
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFD----------- 134

Query: 163 EVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKS-LDLSDNR 221
                          + KE  NLTKL  L L   +         + +      LDL    
Sbjct: 135 ------------VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 222 LSGPIPESFADLK--NLRLLSLMYNEMSGTVPESLVQLPSLEILFI----WNNYFSGSLP 275
           + G   ES        L L+    +  S  V  S+  L  L++  I     N     +  
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 276 ENLGRNSKLRWVDVSTNNFNGSIPPDICS---GGVLFKLILFSNNFTG-----SLSPSLS 327
             L R   L  V +            +        +  L +++   T        + S +
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 328 NCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSN 387
              SL+   +++  F       +S   ++N   LS +             S   + N + 
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 388 NPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP----FKSCKSISVIESHMNNL-SGTI 442
           N      +     +L  LQ        +  N        K+  S+  ++  +N+L S   
Sbjct: 363 N-VFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 443 PESVSNCVELERIDLANNKLIGSIPEVLARLPV-LGVLDLSHNSLSGQIPAKFGSCSSLT 501
             + +    +  ++L++N L GS   V   LP  + VLDL +N +   IP       +L 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGS---VFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 502 VLNVSFNDISGSIPSG 517
            LNV+ N +  S+P G
Sbjct: 477 ELNVASNQLK-SVPDG 491

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 56/345 (16%), Positives = 126/345 (36%), Gaps = 21/345 (6%)

Query: 13  LRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNL---- 68
           L     +LV  ++          ++I N T L  +    + FS      + +L +L    
Sbjct: 171 LSCILLDLVSYHIKGGETES---LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 69  LVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSF---KSLEFLHLAGNL 125
           + L+  +     +  +E+++   L  + L     +     +   F   + +E+L++    
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 126 LNDQIPAELG-----MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           + ++I  E        LK++    +    +  +        +E+    ++ ++       
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS--GPIPESFADLKNLRL 238
              + +    L   +N     V    S +  L++L L  N L     +     ++ +L  
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407

Query: 239 LSLMYNEMSGTVPESLVQLP-SLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGS 297
           L +  N ++    +       S+ +L + +N  +GS+   L     ++ +D+  N    S
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-S 464

Query: 298 IPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSF 342
           IP D+     L +L + SN             +SL  + L DN +
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 60/286 (20%), Positives = 111/286 (38%), Gaps = 22/286 (7%)

Query: 24  NLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVP 83
             S  S +   P  +    ++ SLD+S N  +      +Q   NL  L   SN  + ++ 
Sbjct: 37  KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 84  AEI-SQLEHLKVLNLAGSYFSGPIPSQ-FGSFKSLEFLHLAGNLLNDQIPAEL-GMLKTV 140
            +  S L  L+ L+L+ +Y S  + S  F    SL FL+L GN         L   L  +
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 141 THMEIGYNFYQGNIPWQ-LGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFRNQL 198
             + +G       I  +    ++ ++ L+I  ++L  S   + L ++  +  L L   Q 
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQH 210

Query: 199 AGQVPWEFSRVTTLKSLDLSDNRLSGP--------IPESFADLKNLRLLSLMYNEMSGTV 250
              +       ++++ L+L D  L              S       R + +    +   V
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QV 269

Query: 251 PESLVQLPSLEILFIWNNYFSGSLPEN-LGRNSKLRWVDVSTNNFN 295
            + L Q+  L  L    N    S+P+    R + L+ + + TN ++
Sbjct: 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 3e-20
 Identities = 52/314 (16%), Positives = 105/314 (33%), Gaps = 49/314 (15%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
           SIP  L+    ++SL L  N++      +  R   L++L L+ N ++    +SF+ L +L
Sbjct: 45  SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN--LGRNSKLRWVDVSTNNF 294
             L L YN +S         L SL  L +  N +  +L E       +KL+ + V   + 
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161

Query: 295 NGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLP 354
              I                            +  + L  L ++ +      P     + 
Sbjct: 162 FTKIQRKD-----------------------FAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 355 DINYIDLSRNGFTGGIPTDI-NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASAC 413
           +++++ L        +     +  S +E   + +                     S    
Sbjct: 199 NVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTD----------LDTFHFSELSTGET 247

Query: 414 NITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPE-VLAR 472
           N       F++           +     + + ++    L  ++ + N+L  S+P+ +  R
Sbjct: 248 NSLIKKFTFRNV-------KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDR 299

Query: 473 LPVLGVLDLSHNSL 486
           L  L  + L  N  
Sbjct: 300 LTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 7e-17
 Identities = 54/295 (18%), Positives = 116/295 (39%), Gaps = 28/295 (9%)

Query: 75  SNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAEL 134
           S S + S+P+ ++  E +K L+L+ +  +    S      +L+ L L  N +N  I  + 
Sbjct: 40  SGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDS 95

Query: 135 -GMLKTVTHMEIGYNFYQGNIPWQL-GNMSEVQYLDIAGANLSGSIPKE--LSNLTKLES 190
              L ++ H+++ YN+   N+       +S + +L++ G     ++ +    S+LTKL+ 
Sbjct: 96  FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153

Query: 191 LFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGT 249
           L +       ++  + F+ +T L+ L++  + L    P+S   ++N+  L L   +    
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 250 VPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLF 309
           +   +    S+E L + +          L                  +   +       F
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSEL-----------------STGETNSLIKKFTF 256

Query: 310 KLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRN 364
           + +  ++     +   L+  S L+ L    N         F +L  +  I L  N
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 59/320 (18%), Positives = 95/320 (29%), Gaps = 88/320 (27%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 269
             +KSLDLS+NR++           NL+ L L  N ++    +S   L SLE L      
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL------ 105

Query: 270 FSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNC 329
                  +L  N  L            ++                               
Sbjct: 106 -------DLSYN-YLS-----------NLSSSW-----------------------FKPL 123

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
           SSL  L L  N +                  L        +        KL+   V N  
Sbjct: 124 SSLTFLNLLGNPYK----------------TLGETSLFSHLT-------KLQILRVGNMD 160

Query: 390 KLGGMIPAQT-WSLPSLQNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESV 446
                I  +    L  L+     A ++  +  P   KS +++S +  HM      + E  
Sbjct: 161 TFT-KIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217

Query: 447 -SNCVELERIDLANNKL----IGSIPEV----LARLPVLGVLDLSHNSLSGQIPAKFGSC 497
                 +E ++L +  L       +       L +      + ++  SL  Q+       
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 498 SSLTVLNVSFNDISGSIPSG 517
           S L  L  S N +  S+P G
Sbjct: 277 SGLLELEFSRNQLK-SVPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 36/202 (17%), Positives = 64/202 (31%), Gaps = 42/202 (20%)

Query: 20  LVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           L  L + +     +   + F  LT L  L+I  ++   + P  ++S++N+  L       
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
              +                                S+E L L    L+    +EL    
Sbjct: 211 I-LLLEIF-----------------------VDVTSSVECLELRDTDLDTFHFSEL---- 242

Query: 139 TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL 198
                              L      + + I   +L   + K L+ ++ L  L   RNQL
Sbjct: 243 ------------STGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

Query: 199 AGQVPWEFSRVTTLKSLDLSDN 220
                  F R+T+L+ + L  N
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 12/216 (5%)

Query: 307 VLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGF 366
           V    ++ S +   S + +  +C      +    S +  IP   +    +  +DLS N  
Sbjct: 8   VWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRI 64

Query: 367 TGGIPTDINQASKLEYFNVSNNPKLGGMIPAQT-WSLPSLQNFSASACNITGNLPP--FK 423
           T    +D+ +   L+   +++N  +   I   +  SL SL++   S   ++ NL    FK
Sbjct: 65  TYISNSDLQRCVNLQALVLTSN-GIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFK 121

Query: 424 SCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSIPE-VLARLPVLGVLDL 481
              S++ +    N        S+ S+  +L+ + + N      I     A L  L  L++
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 482 SHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
             + L    P    S  +++ L +        +   
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEI 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 48/253 (18%), Positives = 84/253 (33%), Gaps = 32/253 (12%)

Query: 46  SLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGP 105
           +    +       P GI +      +    N  S    A      +L +L L  +  +  
Sbjct: 15  TTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 106 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ 165
             + F     LE L L+ N     +                              +  + 
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPAT-----------------------FHGLGRLH 108

Query: 166 YLDIAGANLSGSIPKE-LSNLTKLESLFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLS 223
            L +    L   +       L  L+ L+L  N L   +P + F  +  L  L L  NR+S
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 224 GPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN-LGRNS 282
                +F  L +L  L L  N ++   P +   L  L  L+++ N  S +LP   L    
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLR 225

Query: 283 KLRWVDVSTNNFN 295
            L+++ ++ N + 
Sbjct: 226 ALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.1 bits (224), Expect = 7e-20
 Identities = 54/255 (21%), Positives = 83/255 (32%), Gaps = 51/255 (20%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAF 74
                  + L  N  S   P   F    +L  L +  N  +         L  L  LD  
Sbjct: 30  IPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 75  SNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAEL 134
            N+   SV                           F     L  LHL    L + +   L
Sbjct: 89  DNAQLRSVDPAT-----------------------FHGLGRLHTLHLDRCGLQE-LGPGL 124

Query: 135 GMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFL 193
                                     ++ +QYL +    L  ++P +   +L  L  LFL
Sbjct: 125 -----------------------FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL 160

Query: 194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES 253
             N+++      F  + +L  L L  NR++   P +F DL  L  L L  N +S    E+
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 254 LVQLPSLEILFIWNN 268
           L  L +L+ L + +N
Sbjct: 221 LAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 26/226 (11%)

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
           ++  R+ L  N  S      F    ++  + L  N             + LE  ++S+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 390 KLGGMIPAQTWS-LPSLQNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESV 446
           +L   +   T+  L  L       C +   L P  F+   ++  +    N L   +P+  
Sbjct: 92  QLR-SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 447 -SNCVELERIDLANNKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPAK-FGSCSSLTVL 503
             +   L  + L  N+ I S+PE     L  L  L L  N ++  +    F     L  L
Sbjct: 149 FRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTL 206

Query: 504 NVSFNDISGSIPSG--------KVLRLMGSSAYAGNPKLCGAPLQP 541
            +  N++S ++P+         + LRL        NP +C    +P
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRL------NDNPWVCDCRARP 245

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 92.3 bits (230), Expect = 7e-21
 Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 48/263 (18%)

Query: 632 GITVSVKKIEWGATRI--KIVSEFITRIG---TVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           G  V+VK           + +            ++H N+I L G C       L+ ++  
Sbjct: 30  GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFAR 89

Query: 687 NGNLSEKIRTKR-DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH- 744
            G L+  +  KR          + +ARG+ +LH +    I H DLK+SNI+  + +E   
Sbjct: 90  GGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGD 149

Query: 745 -------LAEFGF-KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMY---MDVYGFGEI 791
                  + +FG  +   +    S     AW   E       ++  M+    DV+ +G +
Sbjct: 150 LSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPE------VIRASMFSKGSDVWSYG-V 202

Query: 792 IL-EILTNGRLTNAGSSLQNKPIDGL-----LGEMYNENE-VGSSSSLQDEIKLVLDVAL 844
           +L E+LT              P  G+        +      +   S+  +    ++    
Sbjct: 203 LLWELLTG-----------EVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLM---E 248

Query: 845 LCTRSTPSDRPSMEEALKLLSGL 867
            C    P  RPS    L  L+ +
Sbjct: 249 DCWNPDPHSRPSFTNILDQLTTI 271

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 55/264 (20%)

Query: 632 GITVSVKKIEWGATRIKIVSEFITRIG---TVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
           G  V+VK +       + V+EF+  +     +RH N++  +G         ++ +YL  G
Sbjct: 60  GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRG 119

Query: 689 NL-----SEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           +L         R + D   +  +   VA+G+ +LH+   P I H +LK+ N++ D+    
Sbjct: 120 SLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDKKYTV 178

Query: 744 HLAEFG---FKYLTQLADGSFPAKIAWTESGEFYNA---MKEEMY---MDVYGFGEIIL- 793
            + +FG    K  T L+  S      W        A   +++E      DVY FG +IL 
Sbjct: 179 KVCDFGLSRLKASTFLSSKSAAGTPEWM-------APEVLRDEPSNEKSDVYSFG-VILW 230

Query: 794 EILTNGRLTNAGSSLQNKPIDGL-----LGEMYNENE-----VGSSSSLQDEIKLVLDVA 843
           E+ T             +P   L     +  +  + +        +  +   I+      
Sbjct: 231 ELATL-----------QQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIE------ 273

Query: 844 LLCTRSTPSDRPSMEEALKLLSGL 867
             C  + P  RPS    + LL  L
Sbjct: 274 -GCWTNEPWKRPSFATIMDLLRPL 296

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 59/263 (22%), Positives = 104/263 (39%), Gaps = 57/263 (21%)

Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS 691
              V++K+IE  + R   + E + ++  V H N+++L G C   +   L+ +Y   G+L 
Sbjct: 31  AKDVAIKQIESESERKAFIVE-LRQLSRVNHPNIVKLYGAC--LNPVCLVMEYAEGGSLY 87

Query: 692 EKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME-PHL 745
             +           A      L  ++G+ +LH     A+ H DLK  N++         +
Sbjct: 88  NVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKI 147

Query: 746 AEFGF-----KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM--------DVYGFGEII 792
            +FG       ++T    GS     AW         M  E++         DV+ +G I+
Sbjct: 148 CDFGTACDIQTHMTNNK-GSA----AW---------MAPEVFEGSNYSEKCDVFSWGIIL 193

Query: 793 LEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS-------SSLQDEIKLVLDVALL 845
            E++T             KP D + G  +       +        +L   I+ ++     
Sbjct: 194 WEVITR-----------RKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMT---R 239

Query: 846 CTRSTPSDRPSMEEALKLLSGLK 868
           C    PS RPSMEE +K+++ L 
Sbjct: 240 CWSKDPSQRPSMEEIVKIMTHLM 262

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 57/289 (19%), Positives = 116/289 (40%), Gaps = 25/289 (8%)

Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
            L + I +   ++N +         L  +  L AF    + ++   +  L +L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG 159
           +  +   P    +   +  L L+GN L + + A +  L+++  +++         P  L 
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLKN-VSA-IAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
            +S +Q L +    ++ +I   L+ LT L+ L +   Q++   P   + ++ L +L   D
Sbjct: 127 GLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG 279
           N++S       A L NL  + L  N++  +    L    +L I+ + N   +    + + 
Sbjct: 183 NKISD--ISPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITN---QPVF 235

Query: 280 RNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSN 328
            N+ L   +V        I P      +       S N T +L+  ++N
Sbjct: 236 YNNNLVVPNVVKGPSGAPIAPAT----ISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 24/272 (8%)

Query: 158 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 217
             ++  +  L   G  ++ +I   +  L  L  L L  NQ+    P     +T +  L+L
Sbjct: 37  QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92

Query: 218 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN 277
           S N L      + A L++++ L L   +++      L  L +L++L++  N  +      
Sbjct: 93  SGNPLK--NVSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SP 146

Query: 278 LGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRL 337
           L   + L+++ +     +  + P + +   L  L    N  +  +SP L++  +L+ + L
Sbjct: 147 LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHL 202

Query: 338 EDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPA 397
           ++N  S   PL  +   ++  + L+    T      +   + L   NV   P  G  I  
Sbjct: 203 KNNQISDVSPL--ANTSNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPS-GAPIAP 256

Query: 398 QTWSLPSLQNFSASACNITGNLPPFKSCKSIS 429
            T S     N + ++ N+T NL  F +  S +
Sbjct: 257 ATIS----DNGTYASPNLTWNLTSFINNVSYT 284

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 50/330 (15%), Positives = 99/330 (30%), Gaps = 68/330 (20%)

Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
              L     +   ++ +   V    + +  + +L      ++    E    L NL  L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPD 301
             N++  T    L  L  +  L +  N         +     ++ +D+++      + P 
Sbjct: 71  KDNQI--TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT-DVTP- 124

Query: 302 ICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDL 361
                                   L+  S+L  L L+ N  +   PL  + L ++ Y+ +
Sbjct: 125 ------------------------LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSI 158

Query: 362 SRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP 421
                         Q S L                    +L  L    A    I+ ++ P
Sbjct: 159 GNA-----------QVSDLTPLA----------------NLSKLTTLKADDNKIS-DISP 190

Query: 422 FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDL 481
             S  ++  +    N +S      ++N   L  + L N  +          L V     +
Sbjct: 191 LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVV 246

Query: 482 SHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
              S +   PA      +    N+++N  S
Sbjct: 247 KGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 16/233 (6%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
            N L+ L L  N  +   P++  NLT +  L++S N         I  L+++  LD  S 
Sbjct: 62  LNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST 117

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             +   P  ++ L +L+VL L  +  +   P       +L++L +    ++D  P  L  
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN 171

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L  +T ++   N    +I   L ++  +  + +    +S   P  L+N + L  + L   
Sbjct: 172 LSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGT 249
            +  Q  +  + +     +           P + +D       +L +N  S  
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTSFI 278

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.1 bits (226), Expect = 4e-20
 Identities = 50/274 (18%), Positives = 86/274 (31%), Gaps = 46/274 (16%)

Query: 4   LSGALPGKPLRIF-FNELVDLNLSHNSFSGQFPVEIFNLT--SLISLDISRNNFSGHFPG 60
           +   +    LR+   + L +L L +   +G  P  +   T   L  L++   +++     
Sbjct: 80  IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDA 138

Query: 61  GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH 120
            +  L+  L                      LKVL++A ++       Q   F +L  L 
Sbjct: 139 WLAELQQWL-------------------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
           L+ N    +                         P +   +  +   +      SG    
Sbjct: 180 LSDNPELGERG-----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLL 239
             +   +L+ L L  N L            + L SL+LS   L        A    L +L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVL 279

Query: 240 SLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGS 273
            L YN +    P    +LP +  L +  N F  S
Sbjct: 280 DLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 64/352 (18%), Positives = 106/352 (30%), Gaps = 78/352 (22%)

Query: 172 ANLSGSIPKEL-SNLTKLESLFLFRNQLAGQVPW-EFSRVTTLKSLDLSDNRLSGPIPES 229
            N  G+   EL      LE L    +  A    + +  +  +LK L +   R+   I   
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 230 FADLKN---LRLLSLMYNEMSGTVPESLVQL--PSLEILFIWNNYFSGSLPENLGRNSKL 284
              +     L+ L+L   E++GT P  L++   P L IL + N  ++             
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD---------- 137

Query: 285 RWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSG 344
                    +   +   +  G  L  L +   +        +    +L  L L DN   G
Sbjct: 138 --------AWLAELQQWLKPG--LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 345 EIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP--KLGGMIPAQTWSL 402
           E  L  +  P                     +   L+   + N       G+  A   + 
Sbjct: 188 ERGLISALCP--------------------LKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 403 PSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNK 461
             LQ    S                        N+L             +L  ++L+   
Sbjct: 228 VQLQGLDLS-----------------------HNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 462 LIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGS 513
           L   +P+ L     L VLDLS+N L    P        +  L++  N    S
Sbjct: 265 L-KQVPKGL--PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 33/223 (14%)

Query: 308 LFKLILFSNNFTGSLSPS-LSNCSSLVRLRLEDNSFSGEIP---LKFSQLPDINYIDLSR 363
           L  L+   +        + +    SL RL +        I    L+   +  +  + L  
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 364 NGFTGGIPTDINQAS--KLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP 421
              TG  P  + +A+   L   N+ N          +   L  LQ +             
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNV-----SWATRDAWLAELQQWL------------ 147

Query: 422 FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLA----RLPVLG 477
               K +S+ ++H  N S    E V     L  +DL++N  +G    + A    + P L 
Sbjct: 148 KPGLKVLSIAQAHSLNFS---CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 478 VLDLSHN---SLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG 517
           VL L +    + SG   A   +   L  L++S N +  +  + 
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 24/200 (12%)

Query: 325 SLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFN 384
           S  NC     + L     S E  LK         +D   +       TDI ++  L+   
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLK--------RVDTEADLGQ---FTDIIKSLSLKRLT 74

Query: 385 VSNNPKLGGMIPA--QTWSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNLSGT 441
           V        ++    +   +  LQ  +     +TG  PP         +   ++ N+S  
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 442 IPESVSNCVE------LERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
             ++    ++      L+ + +A    +    E +   P L  LDLS N   G+      
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 496 SC----SSLTVLNVSFNDIS 511
            C     +L VL +    + 
Sbjct: 195 LCPLKFPTLQVLALRNAGME 214

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 89.7 bits (223), Expect = 8e-20
 Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 27/250 (10%)

Query: 634 TVSVKKIEWGATRIKIVSEFITRIGT---VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
            V+VK +   A   + +  F   +G     RH N++  +G+     Q  ++  +    +L
Sbjct: 48  DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSL 106

Query: 691 SEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
              +       +      I    ARG+ +LH     +I H DLK++NI   E+    + +
Sbjct: 107 YHHLHASETKFEMKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGD 163

Query: 748 FG---FKYLTQLADGSFPAK--IAWTESGEFYNAMKEEMY---MDVYGFGEIIL-EILTN 798
           FG    K     +         I W  + E         Y    DVY FG I+L E++T 
Sbjct: 164 FGLATEKSRWSGSHQFEQLSGSILWM-APEVIRMQDSNPYSFQSDVYAFG-IVLYELMT- 220

Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSM 857
           G+L  +  +      D ++  +   +     S ++    K +  +   C +    +RPS 
Sbjct: 221 GQLPYSNIN----NRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSF 276

Query: 858 EEALKLLSGL 867
              L  +  L
Sbjct: 277 PRILAEIEEL 286

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 56/284 (19%), Positives = 95/284 (33%), Gaps = 60/284 (21%)

Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN----RHQAYLLYDYLPN 687
           G  V+VK               I +   +RH+N++  +           Q YL+ DY  N
Sbjct: 60  GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHEN 119

Query: 688 GNLSEKIRTKR-DWAAKYKIVLGVARGLCFLH-----HDCYPAIPHGDLKASNIVFDENM 741
           G+L + +++   D  +  K+      GLC LH         PAI H DLK+ NI+  +N 
Sbjct: 120 GSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNG 179

Query: 742 EPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEM----YM-------------- 783
              +A+ G             A    +++ E        +    YM              
Sbjct: 180 TCCIADLGL------------AVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHF 227

Query: 784 ------DVYGFGEIIL-EILTNGRLTNAGSSLQN-----KPIDGLLGEMY----NEN--- 824
                 D+Y FG +IL E+             Q       P D    +M      +    
Sbjct: 228 QSYIMADMYSFG-LILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRP 286

Query: 825 EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK 868
              +  S  + ++ +  +   C    P+ R +     K L+ + 
Sbjct: 287 SFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMS 330

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 87.8 bits (218), Expect = 6e-19
 Identities = 50/269 (18%), Positives = 87/269 (32%), Gaps = 48/269 (17%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           TG  + +K++       +    F+  +     + H N+++ +G  Y   +   + +Y+  
Sbjct: 34  TGEVMVMKELIRFDE--ETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKG 91

Query: 688 GNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G L   I++      W+ +      +A G+ +LH      I H DL + N +  EN    
Sbjct: 92  GTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNI--I-HRDLNSHNCLVRENKNVV 148

Query: 745 LAEFGF--------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM--------DVYGF 788
           +A+FG              L     P +            M  EM          DV+ F
Sbjct: 149 VADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSF 208

Query: 789 GEIIL-EILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEI-----KLVLD 841
           G I+L EI+                    L      +  +     L              
Sbjct: 209 G-IVLCEIIGRVN-----------ADPDYL--PRTMDFGLNVRGFLDRYCPPNCPPSFFP 254

Query: 842 VALLCTRSTPSDRPSMEEALKLLSGLKPH 870
           + + C    P  RPS  +    L  L+ H
Sbjct: 255 ITVRCCDLDPEKRPSFVKLEHWLETLRMH 283

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 58/281 (20%), Positives = 95/281 (33%), Gaps = 54/281 (19%)

Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH----QAYLLYDYLPN 687
           G  V+VK       R       I +   +RH+N++  +      +    Q +L+ DY  +
Sbjct: 65  GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEH 124

Query: 688 GNLSEKIRTKR-DWAAKYKIVLGVARGLCFLHHD-----CYPAIPHGDLKASNIVFDENM 741
           G+L + +           K+ L  A GL  LH +       PAI H DLK+ NI+  +N 
Sbjct: 125 GSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG 184

Query: 742 EPHLAEFGF-KYLTQLADGSFPAKIAWT--------ESGEFYNAMKEEMY---MDVYGFG 789
              +A+ G         D    A             E  +    MK        D+Y  G
Sbjct: 185 TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMG 244

Query: 790 EIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD-------- 841
            +  EI    R +  G     +         Y  + V S  S+++  K+V +        
Sbjct: 245 LVFWEIAR--RCSIGGIHEDYQL-------PY-YDLVPSDPSVEEMRKVVCEQKLRPNIP 294

Query: 842 -----------VALLCTR---STPSDRPSMEEALKLLSGLK 868
                      +A +      +  + R +     K LS L 
Sbjct: 295 NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 335

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 53/293 (18%), Positives = 98/293 (33%), Gaps = 80/293 (27%)

Query: 632 GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC----YNRHQAYLLYDYLPN 687
           G  V+VK       +       +     +RH+N++  +       ++  Q +L+  Y   
Sbjct: 31  GENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEM 90

Query: 688 GNLSEKIRTKR-DWAAKYKIVLGVARGLCFLHHDCY-----PAIPHGDLKASNIVFDENM 741
           G+L + ++    D  +  +IVL +A GL  LH + +     PAI H DLK+ NI+  +N 
Sbjct: 91  GSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNG 150

Query: 742 EPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEM----YM-------------- 783
           +  +A+ G             A +    + +        +    YM              
Sbjct: 151 QCCIADLGL------------AVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCF 198

Query: 784 ------DVYGFGEIIL-EILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI 836
                 D++ FG ++L E+             +              + V +  S +D  
Sbjct: 199 DSYKRVDIWAFG-LVLWEVARRMVSNGIVEDYK----------PPFYDVVPNDPSFEDMR 247

Query: 837 KLVLD--------------------VALL--CTRSTPSDRPSMEEALKLLSGL 867
           K+V                        L+  C    PS R +     K L+ +
Sbjct: 248 KVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 58/271 (21%)

Query: 630 PTGITVSVKKIEWG-----ATRIKIVSEFITRIG---TVRHKNLIRLLGFCYNRHQAYLL 681
                V++K +  G        I+   EF   +     + H N+++L G  +N     ++
Sbjct: 42  KDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN--PPRMV 99

Query: 682 YDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
            +++P G+L  ++  K     W+ K +++L +A G+ ++ +   P I H DL++ NI   
Sbjct: 100 MEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQ 158

Query: 739 ENMEPH-----LAEFGF-----KYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDV 785
              E       +A+FG        ++ L  G+F     W  + E   A +EE Y    D 
Sbjct: 159 SLDENAPVCAKVADFGLSQQSVHSVSGLL-GNF----QWM-APETIGA-EEESYTEKADT 211

Query: 786 YGFGEIIL-EILTNGRLTNAGSSLQNKPIDGL-LGEMYNENEVGSS-------SSLQDEI 836
           Y F  +IL  ILT              P D    G++   N +                +
Sbjct: 212 YSFA-MILYTILTG-----------EGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRL 259

Query: 837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           + V++   LC    P  RP     +K LS L
Sbjct: 260 RNVIE---LCWSGDPKKRPHFSYIVKELSEL 287

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.9 bits (203), Expect = 6e-18
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 10/185 (5%)

Query: 112 SFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAG 171
           +FK+     L  +   +   A++    ++T++ +            +     ++ L I  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 172 ANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFA 231
            + +   P  +S L+ LE L +    +        S +T+L  LD+S +     I     
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 232 DLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST 291
            L  +  + L YN    T    L  LP L+ L I  +         +    KL  +   +
Sbjct: 134 TLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFS 190

Query: 292 NNFNG 296
               G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 7/163 (4%)

Query: 183 SNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM 242
           + +  L  + L    +             +K L +++   +       + L NL  L +M
Sbjct: 41  AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIM 96

Query: 243 YNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDI 302
             +++     +L  L SL +L I ++    S+   +    K+  +D+S N     I P +
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L 155

Query: 303 CSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGE 345
            +   L  L +  +         + +   L +L     +  G+
Sbjct: 156 KTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 31/208 (14%), Positives = 70/208 (33%), Gaps = 34/208 (16%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           F   ++  L  +S +    +    + SL  + ++  N +     GI+   N+  L   + 
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
                     +    +  L                   +LE L + G  +       L  
Sbjct: 77  --------HATNYNPISGL------------------SNLERLRIMGKDVTSDKIPNLSG 110

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L ++T ++I ++ +  +I  ++  + +V  +D++       I   L  L +L+SL +  +
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD 169

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSG 224
            +             L  L      + G
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 12/187 (6%)

Query: 327 SNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVS 386
           S   + +   L  +S +    +  +Q+  + YI L+    T    T I  A  ++   ++
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTIN 74

Query: 387 NNPKLGGMIPAQTWSLPSLQNFSASACNITGN-LPPFKSCKSISVIESHMNNLSGTIPES 445
           N        P     L +L+       ++T + +P      S+++++   +    +I   
Sbjct: 75  NI-HATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 446 VSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNV 505
           ++   ++  IDL+ N  I  I   L  LP L  L++  + +             L  L  
Sbjct: 132 INTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188

Query: 506 SFNDISG 512
               I G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 3/115 (2%)

Query: 402 LPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNK 461
           + SL   + +  N+T +L   +   +I  +  +  + +      +S    LER+ +    
Sbjct: 43  MNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99

Query: 462 LIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS 516
           +       L+ L  L +LD+SH++    I  K  +   +  +++S+N     I  
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 23/181 (12%), Positives = 61/181 (33%), Gaps = 31/181 (17%)

Query: 308 LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFT 367
           L  + L + N T  L+  +    ++  L + +   +   P+  S L ++  + +     T
Sbjct: 46  LTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGKDVT 101

Query: 368 GGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKS 427
                +++  + L   ++S++      I  +  +LP + +   S      ++ P K+   
Sbjct: 102 SDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160

Query: 428 ISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLS 487
                                   L+ +++  +  +      +   P L  L     ++ 
Sbjct: 161 ------------------------LKSLNIQFDG-VHDY-RGIEDFPKLNQLYAFSQTIG 194

Query: 488 G 488
           G
Sbjct: 195 G 195

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 5e-17
 Identities = 59/341 (17%), Positives = 120/341 (35%), Gaps = 49/341 (14%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
           + +           FP +       I  ++ + + +         L ++  + A ++   
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS--- 53

Query: 80  GSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKT 139
                +I  ++ ++                     ++  L L GN L D  P  L  LK 
Sbjct: 54  -----DIKSVQGIQ------------------YLPNVTKLFLNGNKLTDIKP--LTNLKN 88

Query: 140 VTHMEIGYNFYQGNIP--WQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ 197
           +  + +  N     I     L ++ +++ L +    +S  I   L +L +LESL+L  N+
Sbjct: 89  LGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNK 142

Query: 198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
           +        SR+T L +L L DN++S       A L  L+ L L  N +  +   +L  L
Sbjct: 143 ITDITV--LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHI--SDLRALAGL 196

Query: 258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNN 317
            +L++L +++         +         V  +  +     P  I   G   K  +  + 
Sbjct: 197 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHL 254

Query: 318 FTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINY 358
              +   S       V +      F G +     ++  ++Y
Sbjct: 255 PEFTNEVSF-IFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 2e-15
 Identities = 52/300 (17%), Positives = 101/300 (33%), Gaps = 34/300 (11%)

Query: 158 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 217
               +E    ++   +++ ++    + L  ++ +    + +          +  +  L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 72

Query: 218 SDNRLS--GPIP------------------ESFADLKNLRLLSLMYNEMSGTVPESLVQL 257
           + N+L+   P+                    S  DLK L+ LSL +N +  +    LV L
Sbjct: 73  NGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHL 130

Query: 258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNN 317
           P LE L++ NN  +      L R +KL  + +  N  +  I P +     L  L L S N
Sbjct: 131 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL-SKN 185

Query: 318 FTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQA 377
               L   L+   +L  L L       +     S L   N +  +    +   P  I+  
Sbjct: 186 HISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--SLVTPEIISDD 242

Query: 378 SKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNN 437
              E  NV  +        +  +  P     + +  +     P  +       ++  +  
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIK 302

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 2e-13
 Identities = 45/300 (15%), Positives = 91/300 (30%), Gaps = 44/300 (14%)

Query: 212 LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS 271
           +         +    P            +L    ++  V     +L S++ +   N+   
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 272 GSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSS 331
            S+ + +     +  + ++ N     I P + +   L  L L  N     LS  L +   
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKK 110

Query: 332 LVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKL 391
           L  L LE N  S +I      LP +  + L  N         I   + L           
Sbjct: 111 LKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNK--------ITDITVLS---------- 150

Query: 392 GGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVE 451
                     L  L   S     I+ ++ P      +  +    N++  +   +++    
Sbjct: 151 ---------RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKN 198

Query: 452 LERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS 511
           L+ ++L + + +       + L V   +  +  SL    P            NV ++   
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 17/262 (6%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
            N +  +  +++       ++   L ++  L ++ N  +   P  + +L+NL  L    N
Sbjct: 42  LNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
                    +  L+ LK L+L  +  S  I         LE L+L  N + D I   L  
Sbjct: 98  KIKDLSS--LKDLKKLKSLSLEHNGISD-ING-LVHLPQLESLYLGNNKITD-ITV-LSR 151

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L  +  + +  N    +I   L  ++++Q L ++  ++S  + + L+ L  L+ L LF  
Sbjct: 152 LTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQ 207

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           +   +     S +    ++  +D  L  P   S  D  +    ++ ++    T   S + 
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS--DDGDYEKPNVKWHLPEFTNEVSFIF 265

Query: 257 LPSLEILFIWNNYFSGSLPENL 278
              + I       F G + + L
Sbjct: 266 YQPVTIGKA-KARFHGRVTQPL 286

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 40/260 (15%)

Query: 634 TVSVKKIEWGATRIKIVSEFITRIGT---VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
            V+++ I+        +  F   +      RH+N++  +G C +     ++        L
Sbjct: 57  EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTL 116

Query: 691 SEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
              +R  +   D     +I   + +G+ +LH      I H DLK+ N+ +D N +  + +
Sbjct: 117 YSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITD 172

Query: 748 FG---FKYLTQLADGSFPAK-----IAWT-----ESGEFYNAMKEEMY---MDVYGFGEI 791
           FG      + Q        +     +                  +  +    DV+  G  
Sbjct: 173 FGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALG-T 231

Query: 792 IL-EILTNGRLTNAGSSLQNKPIDGLLGEMY--NENEVGSSSSLQDEIKLVLDVALLCTR 848
           I  E+             +   I   +G     N +++G    + D +         C  
Sbjct: 232 IWYELHA-REWPFKTQPAEA--IIWQMGTGMKPNLSQIGMGKEISDILL-------FCWA 281

Query: 849 STPSDRPSMEEALKLLSGLK 868
               +RP+  + + +L  L 
Sbjct: 282 FEQEERPTFTKLMDMLEKLP 301

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 24/223 (10%)

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTL 212
           N+P         + LD++   L         +  +L+ L L R ++       +  ++ L
Sbjct: 25  NLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 213 KSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSG 272
            +L L+ N +      +F+ L +L+ L  +   ++      +  L +L+ L + +N    
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 273 SLPE-----NLGRNSKLRWVDVSTNNFNGSIPPDICSG-----GVLFKLILFSNNFTGSL 322
           S        NL   + L  +D+S+N    SI             +   L L  N     +
Sbjct: 138 SFKLPEYFSNL---TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 323 SPSLSNCSSLVRLRLEDNSFSGEIPLK-FSQLPDINYIDLSRN 364
            P       L  L L+ N     +P   F +L  +  I L  N
Sbjct: 193 QPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 55/253 (21%), Positives = 90/253 (35%), Gaps = 58/253 (22%)

Query: 23  LNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 81
           L+LS N          F +   L  LD+SR        G  QSL +L  L    N    S
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 82  VPAEI-SQLEHLKVLNLAGSYFSGPIPSQ-FGSFKSLEFLHLAGNLLNDQIPAELGMLKT 139
           +     S L  L+ L    +  +  + +   G  K+L+ L++A NL+             
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLI------------- 136

Query: 140 VTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA 199
                                    Q   +             SNLT LE L L  N++ 
Sbjct: 137 -------------------------QSFKLPEY---------FSNLTNLEHLDLSSNKIQ 162

Query: 200 GQVPWEFSRVTTLK----SLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
                +   +  +     SLDLS N ++   P +F ++  L+ L+L  N++         
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFD 221

Query: 256 QLPSLEILFIWNN 268
           +L SL+ +++  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 54/282 (19%), Positives = 88/282 (31%), Gaps = 82/282 (29%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL-VQLPSLEILFIWNN 268
            + K+LDLS N L      SF     L++L L   E+  T+ +     L  L  L +  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 269 YFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSPSL- 326
                          ++           S+     SG   L KL+    N   SL     
Sbjct: 87  --------------PIQ-----------SLALGAFSGLSSLQKLVAVETNLA-SLENFPI 120

Query: 327 SNCSSLVRLRLEDNSFSGEIPLK--FSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFN 384
            +  +L  L +  N       L   FS L ++ ++DLS N                    
Sbjct: 121 GHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ----------------- 162

Query: 385 VSNNPKLGGMIPAQT-WSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIP 443
                     I       L  +   + S                   ++  +N ++  I 
Sbjct: 163 ---------SIYCTDLRVLHQMPLLNLS-------------------LDLSLNPMN-FIQ 193

Query: 444 ESVSNCVELERIDLANNKLIGSIPE-VLARLPVLGVLDLSHN 484
                 + L+ + L  N+L  S+P+ +  RL  L  + L  N
Sbjct: 194 PGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 40/198 (20%)

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI-NQASKLEYFNVSNN 388
            S   L L  N         F   P++  +DLSR      I        S L    ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86

Query: 389 PKLGGMIPAQT-WSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESV- 446
             +   +       L SLQ   A   N+                         ++     
Sbjct: 87  -PIQ-SLALGAFSGLSSLQKLVAVETNLA------------------------SLENFPI 120

Query: 447 SNCVELERIDLANNKLIGSIPE--VLARLPVLGVLDLSHNSLSGQIPAK-FGSCSSLTV- 502
            +   L+ +++A+N  I S       + L  L  LDLS N +   I          + + 
Sbjct: 121 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178

Query: 503 ---LNVSFNDISGSIPSG 517
              L++S N ++  I  G
Sbjct: 179 NLSLDLSLNPMN-FIQPG 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 8/189 (4%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
           ++P ++   +   +L+L+ +       +    +  L  L+L    L  ++  +   L  +
Sbjct: 24  ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVL 79

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLA 199
             +++ +N  Q ++P     +  +  LD++   L+ S+P      L +L+ L+L  N+L 
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137

Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS 259
              P   +    L+ L L++N L+         L+NL  L L  N +  T+P+       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 260 LEILFIWNN 268
           L   F+  N
Sbjct: 197 LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 48/223 (21%), Positives = 71/223 (31%), Gaps = 54/223 (24%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 82
           L+LS N         +   T L  L++ R   +     G  +L  L  LD   N    S+
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SL 92

Query: 83  PAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTH 142
           P     L  L VL+++ +  +            L+ L+L GN L   +P  L        
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGL-------- 143

Query: 143 MEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV 202
                                                  L+   KLE L L  N L  ++
Sbjct: 144 ---------------------------------------LTPTPKLEKLSLANNNLT-EL 163

Query: 203 PWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN 244
           P    + +  L +L L +N L   IP+ F     L    L  N
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 52/227 (22%), Positives = 84/227 (37%), Gaps = 41/227 (18%)

Query: 287 VDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPS-LSNCSSLVRLRLEDNSFSGE 345
           V+    N   ++PPD+        L L  N    + S + L   + L +L L+    + +
Sbjct: 15  VNCDKRNL-TALPPDLPKD--TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-K 69

Query: 346 IPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSL 405
           + +    LP +  +DLS N                              +P    +LP+L
Sbjct: 70  LQV-DGTLPVLGTLDLSHNQLQ--------------------------SLPLLGQTLPAL 102

Query: 406 QNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKL 462
                S   +T +LP    +    +  +    N L  T+P  + +   +LE++ LANN L
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160

Query: 463 IGSIPE-VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFN 508
              +P  +L  L  L  L L  NSL   IP  F     L    +  N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 39/172 (22%)

Query: 350 FSQLPDINYIDLSRNGFT---GGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQ 406
            S++     ++  +   T     +P D          ++S N  L     A       L 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKD------TTILHLSEN-LLYTFSLATLMPYTRLT 58

Query: 407 NFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSI 466
             +     +T  L                                L  +DL++N+L  S+
Sbjct: 59  QLNLDRAELT-KLQVD------------------------GTLPVLGTLDLSHNQL-QSL 92

Query: 467 PEVLARLPVLGVLDLSHNSLSGQIPAK-FGSCSSLTVLNVSFNDISGSIPSG 517
           P +   LP L VLD+S N L+  +P         L  L +  N++  ++P G
Sbjct: 93  PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPG 142

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 19  ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
            L  L+LSHN      P+    L +L  LD+S N  +    G ++ L  L  L    N  
Sbjct: 78  VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 79  SGSVPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGML 137
             ++P  + +    L+ L+LA +  +          ++L+ L L  N L   IP      
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194

Query: 138 KTVTHMEIGYNFYQGNIPWQ 157
             +    +  N      PW 
Sbjct: 195 HLLPFAFLHGN------PWL 208

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.1 bits (195), Expect = 8e-16
 Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 18/176 (10%)

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKE--LSNLTKLESLFLFRNQLAGQVPWEFSRVT 210
           ++P      S    LD++  NLS  +  E   + LT L SL L  N L       F  V 
Sbjct: 36  SLP------SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 211 TLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
            L+ LDLS N L       F+DL+ L +L L  N +      +   +  L+ L++  N  
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 271 SGSLPE----NLGRNSKLRWVDVSTNNFNGSIPPDICSG---GVLFKLILFSNNFT 319
           S   P     +  +  KL  +D+S+N     +P          V   L L +N   
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 29/166 (17%), Positives = 68/166 (40%), Gaps = 16/166 (9%)

Query: 354 PDINYIDLSRNGFTGGIPTDINQA--SKLEYFNVSNNPKLGGMIPAQTWS-LPSLQNFSA 410
                +DLS N  +  +  +      + L    +S+N  L   I ++ +  +P+L+    
Sbjct: 39  SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHN-HLN-FISSEAFVPVPNLRYLDL 95

Query: 411 SACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSIP 467
           S+ ++   L    F   +++ V+  + N++   +  +   +  +L+++ L+ N++    P
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 468 E----VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFND 509
                   +LP L +LDLS N L            +     +  ++
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 56/207 (27%)

Query: 23  LNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 81
           L+LSHN+ S          LT+L SL +S N+ +         + NL  LD  SN     
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN----- 98

Query: 82  VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVT 141
                  L  L                 F   ++LE L L  N +   +           
Sbjct: 99  ------HLHTLD-------------EFLFSDLQALEVLLLYNNHI-VVVDRNA------- 131

Query: 142 HMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE----LSNLTKLESLFLFRNQ 197
                             +M+++Q L ++   +S   P E     + L KL  L L  N+
Sbjct: 132 ----------------FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 198 LAGQVPWEFSRVTTLK--SLDLSDNRL 222
           L      +  ++       L L +N L
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 23/209 (11%)

Query: 18  NELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGI-QSLRNLLVLDAFS 75
             L  L LSHN  +     E F  + +L  LD+S N+        +   L+ L VL  ++
Sbjct: 64  TNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYN 121

Query: 76  NSFSGSVPAEI-SQLEHLKVLNLAG---SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP 131
           N     V       +  L+ L L+    S F   +         L  L L+ N L     
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 132 AELGMLKTVTHMEIGYNFYQGNIPWQ--------LGNMSEVQYLDIAG--ANLSGSIPKE 181
            +L  L       +  +    N P +          +    Q   +     +L     K+
Sbjct: 181 TDLQKLPAWVKNGLYLH---NN-PLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKK 236

Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVT 210
           L N+  L+       + +         +T
Sbjct: 237 LHNIFSLDFFNCSEYKESAWEAHLGDTLT 265

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 7e-15
 Identities = 85/522 (16%), Positives = 153/522 (29%), Gaps = 122/522 (23%)

Query: 42  TSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSY 101
             + SLDI     S         L                    +  L+  +V+ L    
Sbjct: 3   LDIQSLDIQCEELS---DARWAEL--------------------LPLLQQCQVVRLDDCG 39

Query: 102 FS----GPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG-MLK----TVTHMEIGYNFYQG 152
            +      I S      +L  L+L  N L D     +   L+     +  + +       
Sbjct: 40  LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC---- 95

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV--- 209
                   ++      ++           L  L  L+ L L  N L              
Sbjct: 96  -------CLTGAGCGVLSST---------LRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139

Query: 210 --TTLKSLDLSDNRLSGPIPESFADL----KNLRLLSLMYNEMSGTVPESLVQL-----P 258
               L+ L L    LS    E  A +     + + L++  N+++      L Q       
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 259 SLEILFIWNNYFS----GSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGG-----VLF 309
            LE L + +   +      L   +   + LR + + +N        ++C G       L 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 310 KLILFSNNFT----GSLSPSLSNCSSLVRLRLEDNSFSGE-----IPLKFSQLPDINYID 360
            L ++    T    G L   L    SL  L L  N    E               +  + 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 361 LSRNGFTGGIPTDINQA----SKLEYFNVSNNPKLG--GMIP---AQTWSLPSLQNFSAS 411
           +    FT    +  +        L    +SNN +L   G+             L+    +
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLA 378

Query: 412 ACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL----IGSIP 467
            C+++       SC S++               ++     L  +DL+NN L    I  + 
Sbjct: 379 DCDVSD-----SSCSSLA--------------ATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 468 EVLARL-PVLGVLDLSHNSLSGQIPAKFGS----CSSLTVLN 504
           E + +   +L  L L     S ++  +  +      SL V++
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.6 bits (184), Expect = 4e-14
 Identities = 66/427 (15%), Positives = 132/427 (30%), Gaps = 82/427 (19%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNL-----TSLISLDISRNNFS----GHFPGGIQSLRNLLV 70
           L +LNL  N         +          +  L +     +    G     +++L  L  
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 71  LDAFSNSFSGSVPAEISQLE-----HLKVLNLAGSYFSGPIPSQFGSF----KSLEFLHL 121
           L    N    +    + +        L+ L L     S        S        + L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 122 AGNLLNDQIPAELG-MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS----G 176
           + N +N+     L   LK                     +  +++ L +    ++     
Sbjct: 178 SNNDINEAGVRVLCQGLKD--------------------SPCQLEALKLESCGVTSDNCR 217

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV-----TTLKSLDLSDNRLSGP----IP 227
            +   +++   L  L L  N+L      E         + L++L + +  ++      + 
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 228 ESFADLKNLRLLSLMYNEMSGTVPESLVQL-----PSLEILFIWNNYFSG----SLPENL 278
                 ++L+ LSL  NE+       L +        LE L++ +  F+          L
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 279 GRNSKLRWVDVSTNNFNGSIPPDICSG-----GVLFKLILFSNNFT----GSLSPSLSNC 329
            +N  L  + +S N    +   ++C G      VL  L L   + +     SL+ +L   
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQ-LPDINY----IDLSRNGFTGGIPTDINQASKLEYFN 384
            SL  L L +N       L+  + +         + L    ++  +   +    K     
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK----- 452

Query: 385 VSNNPKL 391
             + P L
Sbjct: 453 --DKPSL 457

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 7e-14
 Identities = 63/375 (16%), Positives = 111/375 (29%), Gaps = 68/375 (18%)

Query: 186 TKLESLFLFRNQL-AGQVPWEFSRVTTLKSLDLSDNRLS----GPIPESFADLKNLRLLS 240
             ++SL +   +L   +       +   + + L D  L+      I  +      L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 241 LMYNEMSGTVPESL-----VQLPSLEILFIWNNYFS----GSLPENLGRNSKLRWVDVST 291
           L  NE+       +          ++ L + N   +    G L   L     L+ + +S 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 292 NNFNGSIPPDICSGG-----VLFKLILFSNNFT----GSLSPSLSNCSSLVRLRLEDNSF 342
           N    +    +C G       L KL L   + +      L+  L        L + +N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 343 SGE------IPLKFSQLPDINYIDLSRNGFTGGIPTDINQA----SKLEYFNVSNNPKLG 392
           +          LK S    +  + L   G T     D+       + L    + +N KLG
Sbjct: 183 NEAGVRVLCQGLKDSPCQ-LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLG 240

Query: 393 G-----MIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVS 447
                 + P        L+      C IT      K C  +                 + 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITA-----KGCGDLC--------------RVLR 281

Query: 448 NCVELERIDLANNKL----IGSIPEVLAR-LPVLGVLDLSHNSLSGQ----IPAKFGSCS 498
               L+ + LA N+L       + E L      L  L +   S +        +      
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 499 SLTVLNVSFNDISGS 513
            L  L +S N +  +
Sbjct: 342 FLLELQISNNRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.7 bits (179), Expect = 2e-13
 Identities = 81/452 (17%), Positives = 140/452 (30%), Gaps = 97/452 (21%)

Query: 114 KSLEFLHLAGNLLNDQIPAELG-MLKTVTHMEIGYNFYQGNIPWQ--------LGNMSEV 164
             ++ L +    L+D   AEL  +L+    + +        +           L     +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC----GLTEARCKDISSALRVNPAL 58

Query: 165 QYLDIAGANLSGSIPKEL-----SNLTKLESLFLFRNQL----AGQVPWEFSRVTTLKSL 215
             L++    L       +     +   K++ L L    L     G +      + TL+ L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 216 DLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS---- 271
            LSDN L             L+LL              L     LE L +     S    
Sbjct: 119 HLSDNLLGD---------AGLQLLCEG----------LLDPQCRLEKLQLEYCSLSAASC 159

Query: 272 GSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG-----GVLFKLILFSNNFT----GSL 322
             L   L      + + VS N+ N +    +C G       L  L L S   T      L
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 323 SPSLSNCSSLVRLRLEDNSFSGE-----IPLKFSQLPDINYIDLSRNGFT----GGIPTD 373
              +++ +SL  L L  N           P        +  + +   G T    G +   
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 374 INQASKLEYFNVSNNPKLG--GMI---PAQTWSLPSLQNFSASACNITGNLPPFKSCKSI 428
           +     L+  +++ N +LG  G              L++    +C+ T        C   
Sbjct: 280 LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTA-----ACCSHF 333

Query: 429 SVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARL-----PVLGVLDLSH 483
           S                ++    L  + ++NN+L  +    L +       VL VL L+ 
Sbjct: 334 S--------------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 484 NSLSGQ----IPAKFGSCSSLTVLNVSFNDIS 511
             +S      + A   +  SL  L++S N + 
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 44/260 (16%), Positives = 84/260 (32%), Gaps = 36/260 (13%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGI-QSLRNLLVLDA 73
                ++L               F     L  ++IS+N+        +  +L  L  +  
Sbjct: 28  LPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR- 85

Query: 74  FSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
                       I +  +L  +N          P  F +  +L++L ++   +   +P  
Sbjct: 86  ------------IEKANNLLYIN----------PEAFQNLPNLQYLLISNTGIK-HLPDV 122

Query: 134 LGM-LKTVTHMEIGYNFYQGNIPWQL--GNMSEVQYLDIAGANLSGSIPKELSNLTKLES 190
             +       ++I  N     I      G   E   L +    +   I     N T+L+ 
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDE 181

Query: 191 LFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGT 249
           L L  N    ++P + F   +    LD+S  R+         +LK LR  S    +    
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---K 238

Query: 250 VPESLVQLPSLEILFIWNNY 269
           +P +L +L +L    +    
Sbjct: 239 LP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 44/280 (15%), Positives = 91/280 (32%), Gaps = 37/280 (13%)

Query: 211 TLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
           + +     +++++  IP      +N   L  +  ++      +      LE + I  N  
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 271 SGSLPENLGRN-SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSN 328
              +  ++  N  KL  + +   N    I P+       L  L++ +            +
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 329 CSSLVRLRLEDNSFSGEIPLK-FSQLP-DINYIDLSRNGFTGGIPTDINQASKLEYFNVS 386
               V L ++DN     I    F  L  +   + L++NG    I       ++L+  N+S
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLS 185

Query: 387 NNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESV 446
           +N  L   +P                         F       +++     +  ++P   
Sbjct: 186 DNNNLE-ELPNDV----------------------FHGASGPVILDISRTRIH-SLPSYG 221

Query: 447 -SNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNS 485
             N  +L      N K + +    L +L  L    L++ S
Sbjct: 222 LENLKKLRARSTYNLKKLPT----LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 17/227 (7%)

Query: 287 VDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSP-SLSNCSSLVRLRLEDNSFSGE 345
                +     IP D+       +L          +   + S    L ++ +  N     
Sbjct: 14  FLCQESKVT-EIPSDLPRN--AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 346 IPLK-FSQLPDINYIDLSRNGFTGGIPTDI-NQASKLEYFNVSNNPKLGGMIPAQT-WSL 402
           I    FS LP ++ I + +      I  +       L+Y  +SN   +   +P       
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIK-HLPDVHKIHS 127

Query: 403 PSLQNFSASACNITGNLPP--FKSCKSISVIES-HMNNLSGTIPESVSNCVELERIDLAN 459
                           +    F      SVI   + N +   I  S  N  +L+ ++L++
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSD 186

Query: 460 NKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPAK-FGSCSSLTVLN 504
           N  +  +P  V        +LD+S   +   +P+    +   L   +
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS 232

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 42/266 (15%), Positives = 79/266 (29%), Gaps = 36/266 (13%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE-LGMLKT 139
            +P+++ +  +   L    +         F  F  LE + ++ N + + I A+    L  
Sbjct: 23  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 140 VTHMEIGYNFYQGNIPWQ-LGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQ 197
           +  + I        I  +   N+  +QYL I+   +   +P     +  +   L +  N 
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

Query: 198 LAGQVPWE-FSRVTT-LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
               +    F  ++     L L+ N +      +F   +   L     N +     +   
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 256 QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFS 315
                 IL I                               S+P        L KL   S
Sbjct: 200 GASGPVILDISRTRIH-------------------------SLPSYGLEN--LKKLRARS 232

Query: 316 NNFTGSLSPSLSNCSSLVRLRLEDNS 341
                 L P+L    +L+   L   S
Sbjct: 233 TYNLKKL-PTLEKLVALMEASLTYPS 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 14/186 (7%)

Query: 326 LSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNV 385
               +  ++  L+  S +  +    ++L  I+ I  + +         I     +    +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFL 75

Query: 386 SNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPES 445
           + N KL  + P    +L +L         +  +L   K  K +  +    N +S  I   
Sbjct: 76  NGN-KLTDIKPLA--NLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGIS-DI-NG 129

Query: 446 VSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNV 505
           + +  +LE + L NNK+  +   VL+RL  L  L L  N +S  I       + L  L +
Sbjct: 130 LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL 185

Query: 506 SFNDIS 511
           S N IS
Sbjct: 186 SKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 25/256 (9%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           F E +  NL   S +         L S+  +  + ++      G IQ L N+  L    N
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGN 78

Query: 77  SFSGSVPAEISQLEHLKVLNLAG---SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
             +   P  ++ L++L  L L        S          K L+ L L  N ++D     
Sbjct: 79  KLTDIKP--LANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLSLEHNGISDING-- 129

Query: 134 LGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFL 193
           L  L  +  + +G N  +      L  ++++  L +    +S  I   L+ LTKL++L+L
Sbjct: 130 LVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYL 185

Query: 194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES 253
            +N +        + +  L  L+L             ++L     +      +    PE 
Sbjct: 186 SKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEI 241

Query: 254 LVQLPSLEILFI-WNN 268
           +      E   + W+ 
Sbjct: 242 ISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 18/254 (7%)

Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
                I  ++ + + +         L ++  + A ++    SV   I  L ++  L L G
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG 159
           +  +  I     + K+L +L L  N + D     L  LK +  + + +N    +I   L 
Sbjct: 78  NKLTD-I-KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
           ++ +++ L +    ++      LS LTKL++L L  NQ++  VP   + +T L++L LS 
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG 279
           N +S     + A LKNL +L L   E           L     +   N   S   PE + 
Sbjct: 188 NHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV--KNTDGSLVTPEIIS 243

Query: 280 RNSKLRWVDVSTNN 293
            +      +V  + 
Sbjct: 244 DDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 18/209 (8%)

Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
                +     L +  +   V    + + ++  +  +++ +     +    L N+  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFL 75

Query: 242 MYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP- 300
             N+++    + L  L +L  LF+  N     L  +L    KL+ + +  N  +  I   
Sbjct: 76  NGNKLTDI--KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DINGL 130

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
                  L  L L +N  T  ++  LS  + L  L LEDN  S  +PL  + L  +  + 
Sbjct: 131 VHLPQ--LESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLY 184

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNP 389
           LS+N  +      +     L+   + +  
Sbjct: 185 LSKNHISD--LRALAGLKNLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 43/259 (16%), Positives = 83/259 (32%), Gaps = 40/259 (15%)

Query: 228 ESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWV 287
            S          +L    ++  V     +L S++ +   N+    S+ + +     +  +
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 73

Query: 288 DVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIP 347
            ++ N     I P + +   L  L L  N     LS  L +   L  L LE N  S    
Sbjct: 74  FLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDING 129

Query: 348 LKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQN 407
           L    LP +  + L  N         I   + L                     L  L  
Sbjct: 130 L--VHLPQLESLYLGNNK--------ITDITVLS-------------------RLTKLDT 160

Query: 408 FSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIP 467
            S     I+ ++ P      +  +    N++S     +++    L+ ++L + + +    
Sbjct: 161 LSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 217

Query: 468 EVLARLPVLGVLDLSHNSL 486
              + L V   +  +  SL
Sbjct: 218 NHQSNLVVPNTVKNTDGSL 236

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.9 bits (186), Expect = 2e-14
 Identities = 43/262 (16%), Positives = 87/262 (33%), Gaps = 24/262 (9%)

Query: 12  PLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVL 71
            +    +   +  L  +     +  +      L   ++S    S      ++S + L  L
Sbjct: 320 VIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELS-VEKSTVLQSELESCKELQEL 377

Query: 72  DAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG-----NLL 126
           +  +     ++   +  L+ L        YFS        + K+++ +  A      +  
Sbjct: 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFS--------TLKAVDPMRAAYLDDLRSKF 429

Query: 127 NDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 186
             +          V  + + +      +   L  +  V +LD++   L  ++P  L+ L 
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALR 486

Query: 187 KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG-PIPESFADLKNLRLLSLMYNE 245
            LE L    N L   V    + +  L+ L L +NRL      +       L LL+L  N 
Sbjct: 487 CLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 246 MSGTVPES---LVQLPSLEILF 264
           +             LPS+  + 
Sbjct: 545 LCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 59/333 (17%), Positives = 113/333 (33%), Gaps = 22/333 (6%)

Query: 189 ESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG 248
           +S + +   L G+   E   V     +   +  LS            +  L LM +E   
Sbjct: 226 QSAWFYHRWLLGR--AEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPL 283

Query: 249 TVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN--------GSIPP 300
           +V        +        +  + SL + L +++       S +                
Sbjct: 284 SVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR 343

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
           D  +   LF+  L S   +  L   L +C  L  L  E+      I L    L  + Y  
Sbjct: 344 DSATDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 402

Query: 361 LSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP 420
            +   F+     D  +A+ L+        +              ++    +  ++T  L 
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLE----NSVLKMEYADVRVLHLAHKDLT-VLC 457

Query: 421 PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLD 480
             +    ++ ++   N L   +P +++    LE +  ++N  + ++   +A LP L  L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQELL 514

Query: 481 LSHNSLSGQIPA--KFGSCSSLTVLNVSFNDIS 511
           L +N L  Q  A     SC  L +LN+  N + 
Sbjct: 515 LCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 5e-08
 Identities = 48/304 (15%), Positives = 84/304 (27%), Gaps = 61/304 (20%)

Query: 186 TKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNE 245
             L +  L            ++   + K   L  +R      +S A  + L    L   E
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS-ATDEQLFRCEL-SVE 359

Query: 246 MSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG 305
            S  +   L     L+ L   N +   ++   +     L +   +   F+     D    
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR- 418

Query: 306 GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNG 365
                L    + F    S      + +  L L     +    L   QL  + ++DLS N 
Sbjct: 419 --AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHL--EQLLLVTHLDLSHNR 474

Query: 366 FTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSC 425
               +P  +     LE    S+N                          +  N+    + 
Sbjct: 475 LRA-LPPALAALRCLEVLQASDN-------------------------ALE-NVDGVANL 507

Query: 426 KSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEV--LARLPVLGVLDLSH 483
                                     L+ + L NN+ +     +  L   P L +L+L  
Sbjct: 508 PR------------------------LQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQG 542

Query: 484 NSLS 487
           NSL 
Sbjct: 543 NSLC 546

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 71.7 bits (175), Expect = 2e-13
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKN 235
                L     L  L++   Q    +       +  L++L +  + L    P++F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 236 LRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
           L  L+L +N +  ++    VQ  SL+ L +  N  
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 7e-09
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 6/119 (5%)

Query: 420 PPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIP-EVLARLPVLGV 478
           P        S +    +         +     L  + + N + +  +    L  L  L  
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 479 LDLSHNSLSGQIPAK-FGSCSSLTVLNVSFNDISGSIPSGKVLRL-MGSSAYAGNPKLC 535
           L +  + L   +    F     L+ LN+SFN +  S+    V  L +     +GNP  C
Sbjct: 61  LTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVP-ESLVQLPSLEILFIWNNYFSGSLPENL 278
              +          +NL  L +   +    +    L  L  L  L I  +     +  + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75

Query: 279 GRN-SKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFT 319
                +L  +++S N    S+      G  L +L+L  N   
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 291 TNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSP-SLSNCSSLVRLRLEDNSFSGEIPLK 349
           T +        +     L +L + +      L    L     L  L +  +     +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 350 -FSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
            F   P ++ ++LS N     +     Q   L+   +S NP
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 130 IPAELGMLKTVTHMEIGYNFYQGNIPWQ-LGNMSEVQYLDIAGANLSGSIPKE-LSNLTK 187
               L   + +T + I    +  ++  + L  + E++ L I  + L   +  +      +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRL 222
           L  L L  N L   + W+  +  +L+ L LS N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 35  PVEIFNLTSLISLDISRNNFSGHFPGG-IQSLRNLLVLDAFSNSFSGSVPAEI-SQLEHL 92
              +    +L  L I       H     ++ L  L  L    +     V  +       L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 93  KVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLN 127
             LNL+ +              SL+ L L+GN L+
Sbjct: 83  SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 11/188 (5%)

Query: 160 NMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLAGQVPWE-FSRVTTLKSLDL 217
           N+  +  + ++       +      NL+K+  + +   +    +  +    +  LK L +
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 218 SDNRLSG-PIPESFADLKNLRLLSLMYNEMSGTVPE-SLVQLPS-LEILFIWNNYFSGSL 274
            +  L   P            +L +  N    ++P  +   L +    L ++NN F+ S+
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV 171

Query: 275 PENLGRNSKLRWVDVSTNNFNGSIPPDICSG--GVLFKLILFSNNFTGSLSPSLSNCSSL 332
                  +KL  V ++ N +   I  D   G       L +   + T +L         L
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHL 228

Query: 333 VRLRLEDN 340
             L   + 
Sbjct: 229 KELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 17/204 (8%)

Query: 324 PSLSNCSSLVRLRLEDNSFSGEIPLK-FSQLPDINYIDLSRNGFTGGIPTDI-NQASKLE 381
           PSL    S   L+L +      IP   FS LP+I+ I +S +     + +      SK+ 
Sbjct: 27  PSLP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 382 YFNVSNNPKLGGMIPAQT-WSLPSLQNFSASACNITGNLPP---FKSCKSISVIESHMNN 437
           +  + N   L   I       LP L+        +    P      S     ++E   N 
Sbjct: 84  HIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNP 141

Query: 438 LSGTIPESV--SNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAK-F 494
              +IP +     C E   + L NN    S+         L  + L+ N     I    F
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 495 -GSCSSLTVLNVSFNDISGSIPSG 517
            G  S  ++L+VS   ++ ++PS 
Sbjct: 201 GGVYSGPSLLDVSQTSVT-ALPSK 223

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 35/241 (14%)

Query: 7   ALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGI-QS 64
            +P  P          L L         P   F NL ++  + +S +            +
Sbjct: 25  RIPSLP-----PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78

Query: 65  LRNLLVLDAFSNSFSGSVPAEI-SQLEHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLA 122
           L  +  ++  +      +  +   +L  LK L +  +     P  ++  S      L + 
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138

Query: 123 GNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL 182
            N     IP      + +                     +E   L +     + S+    
Sbjct: 139 DNPYMTSIPV--NAFQGLC--------------------NETLTLKLYNNGFT-SVQGYA 175

Query: 183 SNLTKLESLFLFRNQLAGQVPWE-FSRVTT-LKSLDLSDNRLSGPIPESFADLKNLRLLS 240
            N TKL++++L +N+    +  + F  V +    LD+S   ++    +    LK L   +
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

Query: 241 L 241
            
Sbjct: 236 T 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 39/230 (16%), Positives = 82/230 (35%), Gaps = 22/230 (9%)

Query: 287 VDVSTNNFNG--SIPPDICSGGVLFKLILFSNNFTGSLSP-SLSNCSSLVRLRLEDNSFS 343
             V+  +     S+PP          L L   +   ++   + SN  ++ R+ +  +   
Sbjct: 16  FRVTCKDIQRIPSLPPS------TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTL 68

Query: 344 GEIPLK-FSQLPDINYIDLSRNGFTGGIPTDI-NQASKLEYFNVSNNPKLGGMIPAQTW- 400
            ++    F  L  + +I++        I  D   +   L++  + N   L  M P  T  
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLK-MFPDLTKV 126

Query: 401 -SLPSLQNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDL 457
            S         +      ++P   F+   + ++     NN   ++     N  +L+ + L
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186

Query: 458 ANNKLIGSIPE-VLARLP-VLGVLDLSHNSLSGQIPAK-FGSCSSLTVLN 504
             NK +  I +     +     +LD+S  S++  +P+K       L   N
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 12/188 (6%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 269
              +   ++   +   IP       + + L L+   +      +   LP++  +++  + 
Sbjct: 11  HQEEDFRVTCKDIQR-IPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 270 FSGSLPENLGRN-SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSP--S 325
               L  +   N SK+  +++        I PD      +L  L +F+            
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK 125

Query: 326 LSNCSSLVRLRLEDNSFSGEIPLK-FSQLP-DINYIDLSRNGFTGGIPTDINQASKLEYF 383
           + +      L + DN +   IP+  F  L  +   + L  NGFT  +       +KL+  
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184

Query: 384 NVSNNPKL 391
            ++ N  L
Sbjct: 185 YLNKNKYL 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 12/191 (6%)

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTL 212
           NIP      ++ + LD+    LS    K    LTKL  L+L  N+L       F  +  L
Sbjct: 34  NIP------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 213 KSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL-VQLPSLEILFIWNNYFS 271
           ++L ++DN+L       F  L NL  L L  N++  ++P  +   L  L  L +  N   
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 272 GSLPENLGRN-SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNFTGSLSPSLSNC 329
            SLP+ +    + L+ + +  N     +P         L  L L +N        +  + 
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 330 SSLVRLRLEDN 340
             L  L+L++N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 56/259 (21%), Positives = 85/259 (32%), Gaps = 62/259 (23%)

Query: 35  PVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKV 94
           P  I        LD+  N  S         L  L +L    N    ++PA I        
Sbjct: 32  PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI-------- 80

Query: 95  LNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNI 154
                          F   K+LE L +  N L   +P                      +
Sbjct: 81  ---------------FKELKNLETLWVTDNKLQA-LPI--------------------GV 104

Query: 155 PWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFSRVTTLK 213
             QL N+     L +    L  S+P  +  +LTKL  L L  N+L       F ++T+LK
Sbjct: 105 FDQLVNL---AELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160

Query: 214 SLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN----- 268
            L L +N+L      +F  L  L+ L L  N++      +   L  L++L +  N     
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220

Query: 269 -----YFSGSLPENLGRNS 282
                Y +  L +      
Sbjct: 221 CNGIIYMAKWLKKKADEGL 239

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 52/233 (22%), Positives = 86/233 (36%), Gaps = 37/233 (15%)

Query: 281 NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPS-LSNCSSLVRLRLED 339
           N+    VD S+     +IP +I +     KL L SN  + SL        + L  L L D
Sbjct: 15  NNNKNSVDCSSKKLT-AIPSNIPAD--TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLND 70

Query: 340 NSFSGEIPLK-FSQLPDINYIDLSRNGFTGGIPTDI-NQASKLEYFNVSNNPKLGGMIPA 397
           N     +P   F +L ++  + ++ N     +P  + +Q   L    +  N         
Sbjct: 71  NKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQ-------- 120

Query: 398 QTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESV-SNCVELERID 456
                  L++              F S   ++ +    N L  ++P+ V      L+ + 
Sbjct: 121 -------LKSLPPRV---------FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELR 163

Query: 457 LANNKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFN 508
           L NN+L   +PE    +L  L  L L +N L       F S   L +L +  N
Sbjct: 164 LYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 33/192 (17%)

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI-NQASKLEYFNVSNN 388
           +   +L L+ N  S      F +L  +  + L+ N     +P  I  +   LE   V++N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 389 PKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESV-S 447
                    +  +LP           +      F    +++ +    N L  ++P  V  
Sbjct: 96  ---------KLQALPI---------GV------FDQLVNLAELRLDRNQLK-SLPPRVFD 130

Query: 448 NCVELERIDLANNKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPAK-FGSCSSLTVLNV 505
           +  +L  + L  N+L  S+P+ V  +L  L  L L +N L  ++P   F   + L  L +
Sbjct: 131 SLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL 188

Query: 506 SFNDISGSIPSG 517
             N +   +P G
Sbjct: 189 DNNQLK-RVPEG 199

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 68.4 bits (168), Expect = 3e-12
 Identities = 57/271 (21%), Positives = 90/271 (33%), Gaps = 72/271 (26%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
             V+VK          + ++F+   RI     H N++RL+G C  +   Y++ + +  G+
Sbjct: 140 TLVAVKSCRETLPP-DLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGD 198

Query: 690 LSEKIRTKRD---WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
               +RT+          ++V   A G+ +L   C   I H DL A N +  E     ++
Sbjct: 199 FLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCC--I-HRDLAARNCLVTEKNVLKIS 255

Query: 747 EFG-------FKYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMYM---DVYGFGEIIL- 793
           +FG         Y         P K  WT  E      A+    Y    DV+ FG I+L 
Sbjct: 256 DFGMSREEADGVYAASGGLRQVPVK--WTAPE------ALNYGRYSSESDVWSFG-ILLW 306

Query: 794 EILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL------------- 840
           E  + G            P   L              S Q   + V              
Sbjct: 307 ETFSLGA----------SPYPNL--------------SNQQTREFVEKGGRLPCPELCPD 342

Query: 841 ---DVALLCTRSTPSDRPSMEEALKLLSGLK 868
               +   C    P  RPS     + L  ++
Sbjct: 343 AVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 18/189 (9%)

Query: 632 GITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
            +TV+VK ++       + + E    +  ++H NL++LLG C      Y++ +++  GNL
Sbjct: 245 SLTVAVKTLKEDTMEVEEFLKEAAV-MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 303

Query: 691 SEKIRTKRDWAAKYK----IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
            + +R              +   ++  + +L    +  I H +L A N +  EN    +A
Sbjct: 304 LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF--I-HRNLAARNCLVGENHLVKVA 360

Query: 747 EFGF------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           +FG          T  A   FP K  WT + E     K  +  DV+ FG ++ EI T G 
Sbjct: 361 DFGLSRLMTGDTYTAHAGAKFPIK--WT-APESLAYNKFSIKSDVWAFGVLLWEIATYGM 417

Query: 801 LTNAGSSLQ 809
               G  L 
Sbjct: 418 SPYPGIDLS 426

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 57/273 (20%), Positives = 110/273 (40%), Gaps = 57/273 (20%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCY--NRHQAYLLYDYL 685
           TG  V+VK ++  +     +++    I     + H+N+++  G C     +   L+ ++L
Sbjct: 49  TGEQVAVKSLKPESGG-NHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFL 107

Query: 686 PNGNLSEKIRTKR---------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
           P+G+L E +   +          +A        + +G+ +L    Y  + H DL A N++
Sbjct: 108 PSGSLKEYLPKNKNKINLKQQLKYAV------QICKGMDYLGSRQY--V-HRDLAARNVL 158

Query: 737 FDENMEPHLAEFGF--------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYM 783
            +   +  + +FG         +Y T   D   P  + W   E     +FY A       
Sbjct: 159 VESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSP--VFWYAPECLMQSKFYIAS------ 210

Query: 784 DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL----- 838
           DV+ FG  + E+LT     ++  +L  K I    G+M     +   ++L++  +L     
Sbjct: 211 DVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVT-RL--VNTLKEGKRLPCPPN 267

Query: 839 ----VLDVALLCTRSTPSDRPSMEEALKLLSGL 867
               V  +   C    PS+R S +  ++    L
Sbjct: 268 CPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 2e-11
 Identities = 89/610 (14%), Positives = 168/610 (27%), Gaps = 166/610 (27%)

Query: 299 PPDICSGGVLFKLILFSNN-----FTGS-LSPSLSNCSSLV-RLRLEDNSFSGEIPLKFS 351
              +     LF  +L         F    L     N   L+  ++ E    S        
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPS-------- 106

Query: 352 QLPDINYIDLSRNGFTGG---IPTDINQASKLEY-----FNVSNNPKLG--GMIPAQTWS 401
            +    YI+     +         ++++             +     +   G++ +    
Sbjct: 107 -MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 402 LPSLQNFSASACN---ITGNLP------PFKSCKSISVIESHMNNLSGTI-PESVSNCVE 451
           +      +   C    +   +         K+C S   +   +  L   I P   S    
Sbjct: 166 V------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 452 LERIDLANNKLIGSIPEVLARLP---VLGVLDLSHNSLSGQIPAKFG-SC---------- 497
              I L  + +   +  +L   P    L VL    N  + +    F  SC          
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 498 -----SSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNP--KLCGAPLQPCHASVAILG 550
                S+ T  ++S +  S ++   +V  L+    Y       L   P +    +     
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDL---PREVLTTN----- 326

Query: 551 KGTGKLKFVLLLCAGIVMFIAAALLGIFFFRRGGKGHWKMISFLGLPQFTANDVLRSFNS 610
                        + I     A  +      R G   W     +   + T   ++ S  S
Sbjct: 327 ---------PRRLSII-----AESI------RDGLATWDNWKHVNCDKLT--TIIES--S 362

Query: 611 TECEEAARPQSAAGCKAVLP--TGITVSVKKIEWGATR----IKIVSEFITRIGTVRHKN 664
               E A  +      +V P    I   +  + W        + +V++            
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-------- 414

Query: 665 LIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPA 724
              L+     +         +P+  L  K++ + ++A    IV        F   D  P 
Sbjct: 415 --SLV----EKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP- 466

Query: 725 IPHGDLKASNIVFD------ENMEPH--LAEFGFKYLTQLADGSF-PAKI-----AWTES 770
            P+ D       +       +N+E    +  F   +L    D  F   KI     AW  S
Sbjct: 467 -PYLD----QYFYSHIGHHLKNIEHPERMTLFRMVFL----DFRFLEQKIRHDSTAWNAS 517

Query: 771 GEFYNAMKE-EMYMDVY------GFGEIILEILTNGRLTNAGSSLQNKPIDGLL------ 817
           G   N +++ + Y   Y       +  ++  IL    L     +L       LL      
Sbjct: 518 GSILNTLQQLKFYKP-YICDNDPKYERLVNAILDF--LPKIEENLICSKYTDLLRIALMA 574

Query: 818 --GEMYNENE 825
               ++ E  
Sbjct: 575 EDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-05
 Identities = 75/541 (13%), Positives = 159/541 (29%), Gaps = 170/541 (31%)

Query: 9   PGKPLRIFFNELVDLNLSHNSFSGQFPV----EIFNL-TSLISLDISRNNFSGHFPGG-- 61
           P    R++  +   L   +  F+ ++ V        L  +L+ L     N       G  
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSG 162

Query: 62  -----IQSLRNLLVLDAFSN-----SFSGSVPAEISQLEHLKVL--NLAGSYFSGP---- 105
                +    +  V           +   +  +  + LE L+ L   +  ++ S      
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 106 -IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV 164
            I  +  S ++ E   L   L +      L +L  V + +           W   N+S  
Sbjct: 222 NIKLRIHSIQA-ELRRL---LKSKPYENCLLVLLNVQNAKA----------WNAFNLS-C 266

Query: 165 QYL----DIAGAN-LSGSIPKELS------NLTKLESLFLFRNQLAGQVPWEFSRVTTLK 213
           + L         + LS +    +S       LT  E   L              +    +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------------LLKYLDCR 314

Query: 214 SLDLSDNRLSG-P-----IPESFADLKNL--RLLSLMYNEMSGTVPESLVQLPSLEI--- 262
             DL    L+  P     I ES  D          +  ++++  +  SL  L   E    
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 263 ---LFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFT 319
              L +         P +                    IP       +L   +++ +   
Sbjct: 375 FDRLSV--------FPPS---------AH---------IPTI-----LL--SLIWFDVIK 401

Query: 320 GSLSPSLSNC--SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTD---- 373
             +   ++     SLV  + ++++ S         +P I Y++L        +  +    
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTIS---------IPSI-YLELKVK-----LENEYALH 446

Query: 374 ---INQASKLEYFNVSNNPK--------------LGGMIPAQTWSL-PSL-QNF------ 408
              ++  +  + F+  +                 L  +   +  +L   +  +F      
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 409 ---SASACNITGNLPP-------FKS--CKSISVIESHMNNLSGTIPESVSNCVELERID 456
               ++A N +G++         +K   C +    E  +N +   +P+   N +  +  D
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 457 L 457
           L
Sbjct: 567 L 567

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 27/189 (14%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC-YNRHQAYLLYD 683
                  G  V+VK I+  AT    ++E    +  +RH NL++LLG     +   Y++ +
Sbjct: 210 MLGDY-RGNKVAVKCIKNDATAQAFLAEASV-MTQLRHSNLVQLLGVIVEEKGGLYIVTE 267

Query: 684 YLPNGNLSEKIRTKRDWAAKYK----IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           Y+  G+L + +R++              L V   + +L  + +  + H DL A N++  E
Sbjct: 268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF--V-HRDLAARNVLVSE 324

Query: 740 NMEPHLAEFGF--KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMYM---DVYGFGEII 792
           +    +++FG   +  +    G  P K  WT  E      A++E+ +    DV+ FG I+
Sbjct: 325 DNVAKVSDFGLTKEASSTQDTGKLPVK--WTAPE------ALREKKFSTKSDVWSFG-IL 375

Query: 793 L-EILTNGR 800
           L EI + GR
Sbjct: 376 LWEIYSFGR 384

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 6/143 (4%)

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTL 212
           N+P        +  + +    +    P   S   KL  + L  NQ++   P  F  + +L
Sbjct: 29  NLP------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 213 KSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSG 272
            SL L  N+++      F  L +L+LL L  N+++    ++   L +L +L +++N    
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 273 SLPENLGRNSKLRWVDVSTNNFN 295
                      ++ + ++ N F 
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 6/144 (4%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
            IP  L        + L +N +    P  FS    L+ +DLS+N++S   P++F  L++L
Sbjct: 25  EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN-SKLRWVDVSTNNFN 295
             L L  N+++         L SL++L +  N  +  L  +  ++   L  + +  N   
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 296 GSIPPDICSG-GVLFKLILFSNNF 318
            +I     S    +  + L  N F
Sbjct: 142 -TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 52/189 (27%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
            +P  +   E +  + L  +      P  F  +K L  + L+ N ++             
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS------------- 69

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG 200
                        +                 A            L  L SL L+ N++  
Sbjct: 70  ------------ELA--------------PDA---------FQGLRSLNSLVLYGNKIT- 93

Query: 201 QVPWE-FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS 259
           ++P   F  + +L+ L L+ N+++    ++F DL NL LLSL  N++      +   L +
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 260 LEILFIWNN 268
           ++ + +  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 434 HMNNLSGTIPESV-SNCVELERIDLANNKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIP 491
             N +   IP    S   +L RIDL+NN++   +       L  L  L L  N ++ ++P
Sbjct: 40  EQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT-ELP 96

Query: 492 AK-FGSCSSLTVLNVSFNDISGSIPSG 517
              F    SL +L ++ N I+  +   
Sbjct: 97  KSLFEGLFSLQLLLLNANKIN-CLRVD 122

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 44/117 (37%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTL 212
            IP       +V  L + G   +  +PKELSN   L  + L  N+++      FS +T L
Sbjct: 28  GIP------RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 213 KSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNN 268
            +L LS NRL    P +F  LK+LRLLSL  N++S  VPE     L +L  L I  N
Sbjct: 81  LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 434 HMNNLSGTIPESVSNCVELERIDLANNKLIGSIPE-VLARLPVLGVLDLSHNSLSGQIPA 492
             N  +  +P+ +SN   L  IDL+NN+ I ++     + +  L  L LS+N L   IP 
Sbjct: 39  DGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLR-CIPP 95

Query: 493 K-FGSCSSLTVLNVSFNDISGSIPSG 517
           + F    SL +L++  NDIS  +P G
Sbjct: 96  RTFDGLKSLRLLSLHGNDIS-VVPEG 120

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 54/339 (15%), Positives = 100/339 (29%), Gaps = 94/339 (27%)

Query: 211 TLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
           +++   L  + ++        D K++                 L++  S++ + +  N  
Sbjct: 5   SIEGKSLKLDAITT------EDEKSV--------------FAVLLEDDSVKEIVLSGNTI 44

Query: 271 SG----SLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSL 326
                  L EN+     L   + S + F G +  +I                   L  +L
Sbjct: 45  GTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEAL-------------RLLLQAL 90

Query: 327 SNCSSLVRLRLEDNSFSGEIPLKFSQLPDIN----YIDLSRNGFT-------------GG 369
             C  L  +RL DN+F              +    ++ L  NG                 
Sbjct: 91  LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 370 IPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASA-CNITGNLPPFKSCKSI 428
           +      A  L       N                L+N S             F+S + +
Sbjct: 151 VNKKAKNAPPLRSIICGRN---------------RLENGSMKEWAKT------FQSHRLL 189

Query: 429 SVIESHMNNL-----SGTIPESVSNCVELERIDLANNKLIG-----SIPEVLARLPVLGV 478
             ++   N +        + E ++ C EL+ +DL +N         ++   L   P L  
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRE 248

Query: 479 LDLSHNSLSGQ-IPA-----KFGSCSSLTVLNVSFNDIS 511
           L L+   LS +   A            L  L + +N+I 
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 63/361 (17%), Positives = 116/361 (32%), Gaps = 87/361 (24%)

Query: 20  LVDLNLSHNSFSGQFPVEIF----NLTSLISLDISRNNFSGHFPGGIQSL-------RNL 68
           +   +L  ++ + +    +F       S+  + +S N          + L       ++L
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG---TEAARWLSENIASKKDL 62

Query: 69  LVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND 128
            + + FS+ F+G V  EI   E L++L  A                 L  + L+ N    
Sbjct: 63  EIAE-FSDIFTGRVKDEI--PEALRLLLQA-----------LLKCPKLHTVRLSDNAFGP 108

Query: 129 Q----IPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSN 184
                +   L     + H+ +  N         LG  +      IA A    ++ K+  N
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNN--------GLGPQA-GAK--IARALQELAVNKKAKN 157

Query: 185 LTKLESLFLFRNQL--AGQVPW--EFSRVTTLKSLDLSDNRL-----SGPIPESFADLKN 235
              L S+   RN+L       W   F     L ++ +  N +        + E  A  + 
Sbjct: 158 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217

Query: 236 LRLLSLMYNEMS--GTVP--ESLVQLPSLEILFIWNN--------YFSGSLPENLGRNSK 283
           L++L L  N  +  G+     +L   P+L  L + +             +  +    N  
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--LENIG 275

Query: 284 LRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSL-SNCSSLVRLRLEDNSF 342
           L+ + +  N         I    V             +L   +      L+ L L  N F
Sbjct: 276 LQTLRLQYNE--------IELDAVR------------TLKTVIDEKMPDLLFLELNGNRF 315

Query: 343 S 343
           S
Sbjct: 316 S 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 43/368 (11%), Positives = 103/368 (27%), Gaps = 84/368 (22%)

Query: 182 LSNLTKLESLFLFRNQL----AGQVPWEFSRVTTLKSLDLSDNRLSGP----IPESFADL 233
           ++  + +E   L  + +       V        ++K + LS N +       + E+ A  
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 234 KNLRLLSLMYNEMSGTVPE----------SLVQLPSLEILFIWNNYFSG----SLPENLG 279
           K+L +             E          +L++ P L  + + +N F       L + L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 280 RNSKLRWVDVSTNNF-------------NGSIPPDICSGGVLFKLILFSNNFTG----SL 322
           +++ L  + +  N                 ++     +   L  +I   N          
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 323 SPSLSNCSSLVRLRLEDNSFSGE-----IPLKFSQLPDINYIDLSRNGFTG----GIPTD 373
           + +  +   L  +++  N    E     +    +   ++  +DL  N FT      +   
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 374 INQASKLEYFNVSNNP-------KLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCK 426
           +     L    +++          +             LQ        I        + +
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAF--SKLENIGLQTLRLQYNEIEL-----DAVR 292

Query: 427 SISVIESHMNNLSGTIPESV-SNCVELERIDLANNKL------IGSIPEVLARLPVLGVL 479
           ++                 +     +L  ++L  N+       +  I EV +      + 
Sbjct: 293 TLK--------------TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338

Query: 480 DLSHNSLS 487
           +L      
Sbjct: 339 ELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 42/270 (15%), Positives = 69/270 (25%), Gaps = 65/270 (24%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNL----TSLISLDISRNNFSGHFPGGIQSL---------- 65
           L  + LS N+F       + +     T L  L +  N      P     +          
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQELAVN 152

Query: 66  ------RNLLVLDAFSNSF-SGSVPA---EISQLEHLKVLNLAGSYF-----SGPIPSQF 110
                   L  +    N   +GS+            L  + +  +          +    
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 111 GSFKSLEFLHLAGNLLNDQ----IPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQY 166
              + L+ L L  N         +   L     +  + +            L        
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--------LLSA------ 258

Query: 167 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV-----TTLKSLDLSDNR 221
               GA        +L N   L++L L  N++          V       L  L+L+ NR
Sbjct: 259 ---RGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 222 LS------GPIPESFADLKNLRLLSLMYNE 245
            S        I E F+      L  L   E
Sbjct: 315 FSEEDDVVDEIREVFSTRGRGELDELDDME 344

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 17/202 (8%)

Query: 310 KLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGG 369
           + I         + P     ++ V+  L   S +  +     +L  +   +   +     
Sbjct: 1   ESIQRPTPIN-QVFP-DPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQ-- 54

Query: 370 IPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSIS 429
               +   + L+  ++S+N ++  + P +   L  L+  S +   +  NL    S   +S
Sbjct: 55  SLAGMQFFTNLKELHLSHN-QISDLSPLK--DLTKLEELSVNRNRLK-NLNGIPSAC-LS 109

Query: 430 VIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQ 489
            +    N L  T  +S+ +   LE + + NNK + SI  +L  L  L VLDL  N ++  
Sbjct: 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGNEITNT 165

Query: 490 IPAKFGSCSSLTVLNVSFNDIS 511
                     +  ++++     
Sbjct: 166 GG--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 48/315 (15%), Positives = 100/315 (31%), Gaps = 74/315 (23%)

Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
            L + +  ++ + + +       + L  +   +  ++         I  L  ++      
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNS--------NIQSLAGMQ------ 60

Query: 100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG 159
                        F +L+ LHL+ N ++D  P                          L 
Sbjct: 61  ------------FFTNLKELHLSHNQISDLSP--------------------------LK 82

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNL--TKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 217
           ++++++ L +    L       L+ +    L  LFL  N+L          +  L+ L +
Sbjct: 83  DLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSI 135

Query: 218 SDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN 277
            +N+L          L  L +L L  NE+  T    L +L  +  + +          E 
Sbjct: 136 RNNKLKS--IVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCV---NEP 188

Query: 278 LGRNSKLRWVDVSTNNFNGSIPP-DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR 336
           +    +L   +   +     I P  I +GG      +       +   S    S  + + 
Sbjct: 189 VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKF-SEYINVG 247

Query: 337 LEDNSFSGEI--PLK 349
             +  F G +  P+K
Sbjct: 248 ETEAIFDGTVTQPIK 262

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 43/213 (20%), Positives = 76/213 (35%), Gaps = 15/213 (7%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
               V  NL   S +     +   L+ + + +   +N       G+Q   NL  L    N
Sbjct: 18  LANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN 73

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             S   P  +  L  L+ L++  +               L  L L  N L D     L  
Sbjct: 74  QISDLSP--LKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRD--TDSLIH 126

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           LK +  + I  N  + +I   LG +S+++ LD+ G  ++ +    L+ L K+  + L   
Sbjct: 127 LKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQ 182

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES 229
           +   +       +    ++   D R   P   S
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 48/221 (21%), Positives = 78/221 (35%), Gaps = 17/221 (7%)

Query: 121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK 180
                +N   P     L       +G       +      +S VQ  +   +N+  S+  
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-A 57

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
            +   T L+ L L  NQ++   P     +T L+ L ++ NRL      +      L  L 
Sbjct: 58  GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL---NGIPSACLSRLF 112

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           L  NE+  T  +SL+ L +LEIL I NN    S+   LG  SKL  +D+  N    +   
Sbjct: 113 LDNNELRDT--DSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT-NTGG 167

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNS 341
            +     +  + L                     ++  D  
Sbjct: 168 -LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 23/206 (11%)

Query: 310 KLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGG 369
                ++N   SL+  +   ++L  L L  N  S   PL    L  +  + ++RN     
Sbjct: 45  NFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSPL--KDLTKLEELSVNRNRLK-- 98

Query: 370 IPTDIN--QASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKS 427
              ++N   ++ L    + NN +L          L +L+  S     +  ++        
Sbjct: 99  ---NLNGIPSACLSRLFLDNN-ELRDTDSLI--HLKNLEILSIRNNKLK-SIVMLGFLSK 151

Query: 428 ISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLS 487
           + V++ H N ++      ++   ++  IDL   K    + E +   P L + +   +   
Sbjct: 152 LEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKC---VNEPVKYQPELYITNTVKD-PD 205

Query: 488 GQI--PAKFGSCSSLTVLNVSFNDIS 511
           G+   P    +  S     V +    
Sbjct: 206 GRWISPYYISNGGSYVDGCVLWELPV 231

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 21/197 (10%)

Query: 625 CKAVLPTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
                     V++K ++ G       + E    +  +RH+ L++L     +    Y++ +
Sbjct: 201 WMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV-MKKLRHEKLVQLYAVV-SEEPIYIVTE 258

Query: 684 YLPNGNLSEKIRTKRDWAAKYK----IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           Y+  G+L + ++ +     +      +   +A G+ ++    Y  + H DL+A+NI+  E
Sbjct: 259 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY--V-HRDLRAANILVGE 315

Query: 740 NMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEII 792
           N+   +A+FG        +Y T      FP K  WT + E     +  +  DV+ FG ++
Sbjct: 316 NLVCKVADFGLARLIEDNEY-TARQGAKFPIK--WT-APEAALYGRFTIKSDVWSFGILL 371

Query: 793 LEILTNGRLTNAGSSLQ 809
            E+ T GR+   G   +
Sbjct: 372 TELTTKGRVPYPGMVNR 388

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 29/190 (15%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFITRI-GTVRHKNLIRLLGFCY-NRHQAYLLY 682
                  G  V+VK I+  AT    ++E    +   +RH NL++LLG     +   Y++ 
Sbjct: 38  MLGDY-RGNKVAVKCIKNDATAQAFLAE--ASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 94

Query: 683 DYLPNGNLSEKIRTKRDWAAKYK----IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
           +Y+  G+L + +R++              L V   + +L  + +  + H DL A N++  
Sbjct: 95  EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF--V-HRDLAARNVLVS 151

Query: 739 ENMEPHLAEFGF---KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGE 790
           E+    +++FG       TQ   G  P K  WT  E+    +F          DV+ FG 
Sbjct: 152 EDNVAKVSDFGLTKEASSTQ-DTGKLPVK--WTAPEALREKKFSTK------SDVWSFGI 202

Query: 791 IILEILTNGR 800
           ++ EI + GR
Sbjct: 203 LLWEIYSFGR 212

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 31/186 (16%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K++    +  K   E +    +  +V + ++ RLLG C       L+   +P G 
Sbjct: 45  IPVAIKELREATSP-KANKEILDEAYVMASVDNPHVCRLLGIC-LTSTVQLITQLMPFGC 102

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L + +R  +D      ++   + +A+G+ +L       + H DL A N++        + 
Sbjct: 103 LLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL--V-HRDLAARNVLVKTPQHVKIT 159

Query: 747 EFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIILE 794
           +FG        +       G  P  I W   ES     + +        DV+ +G  + E
Sbjct: 160 DFGLAKLLGAEEKEYHAEGGKVP--IKWMALESILHRIYTHQ------SDVWSYGVTVWE 211

Query: 795 ILTNGR 800
           ++T G 
Sbjct: 212 LMTFGS 217

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWE-FSRVTTLKSLDLS 218
            + +++ ++ +   ++          + +  + L  N+L   V  + F  + +LK+L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLR 113

Query: 219 DNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN 268
            NR++    +SF  L ++RLLSL  N+++   P +   L SL  L +  N
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 7/145 (4%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPW-EFSRVTTLKSLDLSDNRLSGPIPESFADLKN 235
            IP+ +   T    L L  N+         F ++  L+ ++ S+N+++     +F     
Sbjct: 25  KIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 236 LRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN-SKLRWVDVSTNNF 294
           +  + L  N +     +    L SL+ L + +N  +  +  +     S +R + +  N  
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

Query: 295 NGSIPPDICSG-GVLFKLILFSNNF 318
             ++ P        L  L L +N F
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 23  LNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 81
           L L++N F+      IF  L  L  ++ S N  +    G  +    +  +   SN    +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 82  VPAEI-SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLL 126
           V  ++   LE LK L L  +  +      F    S+  L L  N +
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 57/267 (21%), Positives = 101/267 (37%), Gaps = 46/267 (17%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQA--YLLYDYL 685
           TG  V+VK+++          +F   I     +    +++  G  Y   +    L+ +YL
Sbjct: 51  TGALVAVKQLQHSGP--DQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYL 108

Query: 686 PNGNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
           P+G L + ++  R      +++L    + +G+ +L       + H DL A NI+ +    
Sbjct: 109 PSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRC--V-HRDLAARNILVESEAH 165

Query: 743 PHLAEFGF-KYLTQLAD-------GSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFG 789
             +A+FG  K L    D       G  P  I W   ES     F          DV+ FG
Sbjct: 166 VKIADFGLAKLLPLDKDYYVVREPGQSP--IFWYAPESLSDNIFSRQS------DVWSFG 217

Query: 790 EIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL---------VL 840
            ++ E+ T    + + S+   + +            +     L++  +L         V 
Sbjct: 218 VVLYELFTYCDKSCSPSAEFLRMMGCERDVPALS-RL--LELLEEGQRLPAPPACPAEVH 274

Query: 841 DVALLCTRSTPSDRPSMEEALKLLSGL 867
           ++  LC   +P DRPS       L  L
Sbjct: 275 ELMKLCWAPSPQDRPSFSALGPQLDML 301

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 21/197 (10%)

Query: 625 CKAVLPTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
                     V++K ++ G       + E    +  +RH+ L++L     +    Y++ +
Sbjct: 284 WMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV-MKKLRHEKLVQLYAVV-SEEPIYIVTE 341

Query: 684 YLPNGNLSEKIRTKRDWAAKYK----IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           Y+  G+L + ++ +     +      +   +A G+ ++    Y  + H DL+A+NI+  E
Sbjct: 342 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY--V-HRDLRAANILVGE 398

Query: 740 NMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEII 792
           N+   +A+FG        +Y T      FP K  WT + E     +  +  DV+ FG ++
Sbjct: 399 NLVCKVADFGLARLIEDNEY-TARQGAKFPIK--WT-APEAALYGRFTIKSDVWSFGILL 454

Query: 793 LEILTNGRLTNAGSSLQ 809
            E+ T GR+   G   +
Sbjct: 455 TELTTKGRVPYPGMVNR 471

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 31/193 (16%)

Query: 625 CKAVLPTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
             A       V+VK ++ G+      ++E    + T++H  L++L      +   Y++ +
Sbjct: 205 WMATYNKHTKVAVKTMKPGSMSVEAFLAEANV-MKTLQHDKLVKLHAVV-TKEPIYIITE 262

Query: 684 YLPNGNLSEKIRTKRDWAAKYK----IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           ++  G+L + +++                 +A G+ F+    Y  I H DL+A+NI+   
Sbjct: 263 FMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY--I-HRDLRAANILVSA 319

Query: 740 NMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYG 787
           ++   +A+FG        +Y T      FP K  WT  E+   G F          DV+ 
Sbjct: 320 SLVCKIADFGLARVIEDNEY-TAREGAKFPIK--WTAPEAINFGSFTIK------SDVWS 370

Query: 788 FGEIILEILTNGR 800
           FG +++EI+T GR
Sbjct: 371 FGILLMEIVTYGR 383

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 60/271 (22%), Positives = 108/271 (39%), Gaps = 55/271 (20%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYN--RHQAYLLYDYL 685
           TG  V+VK ++  A   +  S +   I    T+ H+++I+  G C +       L+ +Y+
Sbjct: 59  TGEMVAVKALKADAGP-QHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYV 117

Query: 686 PNGNLSEKIRTKR-------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
           P G+L + +            +A        +  G+ +LH   Y  I H DL A N++ D
Sbjct: 118 PLGSLRDYLPRHSIGLAQLLLFAQ------QICEGMAYLHAQHY--I-HRDLAARNVLLD 168

Query: 739 ENMEPHLAEFGF--------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDV 785
            +    + +FG         +Y     DG  P  + W   E     +FY A       DV
Sbjct: 169 NDRLVKIGDFGLAKAVPEGHEYYRVREDGDSP--VFWYAPECLKEYKFYYA------SDV 220

Query: 786 YGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL------- 838
           + FG  + E+LT+   + +  +   + I    G+M     +  +  L+   +L       
Sbjct: 221 WSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVL-RL--TELLERGERLPRPDKCP 277

Query: 839 --VLDVALLCTRSTPSDRPSMEEALKLLSGL 867
             V  +   C  +  S RP+ E  + +L  +
Sbjct: 278 AEVYHLMKNCWETEASFRPTFENLIPILKTV 308

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLC 715
           +RH N++RL G+ ++  + YL+ +Y P G +  +++          A Y  +  +A  L 
Sbjct: 66  LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATY--ITELANALS 123

Query: 716 FLH-HDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           + H         H D+K  N++     E  +A+FG+
Sbjct: 124 YCHSKRVI----HRDIKPENLLLGSAGELKIADFGW 155

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 32/186 (17%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           +TV+VK ++        V EF+        ++H NL++LLG C      Y++ +++  GN
Sbjct: 39  LTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGN 95

Query: 690 LSEKIRTKRDWAAKYK----IVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           L + +R              +   ++  + +L    +  I H DL A N +  EN    +
Sbjct: 96  LLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF--I-HRDLAARNCLVGENHLVKV 152

Query: 746 AEFGF------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIILE 794
           A+FG          T  A   FP K  WT  ES    +F          DV+ FG ++ E
Sbjct: 153 ADFGLSRLMTGDTYTAHAGAKFPIK--WTAPESLAYNKFSIK------SDVWAFGVLLWE 204

Query: 795 ILTNGR 800
           I T G 
Sbjct: 205 IATYGM 210

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 44/258 (17%), Positives = 92/258 (35%), Gaps = 51/258 (19%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGF----------------CYN 674
            G T  +K++++     K   E +  +  + H N++   G                    
Sbjct: 35  DGKTYVIKRVKY--NNEKAERE-VKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSK 91

Query: 675 RHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDL 730
               ++  ++   G L + I  +R       + L     + +G+ ++H      + + DL
Sbjct: 92  TKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDL 148

Query: 731 KASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA---MKEEMY---MD 784
           K SNI   +  +  + +FG    T L +     +   T     Y +   +  + Y   +D
Sbjct: 149 KPSNIFLVDTKQVKIGDFGLV--TSLKNDGKRTRSKGT---LRYMSPEQISSQDYGKEVD 203

Query: 785 VYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL 844
           +Y  G I+ E+L         S       DG++ +++           +  ++ +L    
Sbjct: 204 LYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIF-------DKKEKTLLQKLLSK-- 254

Query: 845 LCTRSTPSDRPSMEEALK 862
                 P DRP+  E L+
Sbjct: 255 -----KPEDRPNTSEILR 267

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 660 VRHKNLIRLLGFCYNR----HQAYLLYDYLPNGNLSEKIRTKRDWAAKY------KIVLG 709
             H N++RL+ +C       H+A+LL  +   G L  +I   +D            ++LG
Sbjct: 83  FNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLG 142

Query: 710 VARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           + RGL  +H        H DLK +NI+  +  +P L + G 
Sbjct: 143 ICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGS 180

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 31/186 (16%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V++K++    +  K   E +    +  +V + ++ RLLG C       L+   +P G 
Sbjct: 45  IPVAIKELREATSP-KANKEILDEAYVMASVDNPHVCRLLGIC-LTSTVQLITQLMPFGC 102

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L + +R  +D      ++   + +A+G+ +L       + H DL A N++        + 
Sbjct: 103 LLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL--V-HRDLAARNVLVKTPQHVKIT 159

Query: 747 EFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIILE 794
           +FG        +       G  P  I W   ES     + +        DV+ +G  + E
Sbjct: 160 DFGLAKLLGAEEKEYHAEGGKVP--IKWMALESILHRIYTHQ------SDVWSYGVTVWE 211

Query: 795 ILTNGR 800
           ++T G 
Sbjct: 212 LMTFGS 217

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 11/96 (11%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLC 715
           +RH N++R+  + ++R + YL+ ++ P G L ++++         +A +  +  +A  L 
Sbjct: 71  LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATF--MEELADALH 128

Query: 716 FLH-HDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
           + H         H D+K  N++     E  +A+FG+
Sbjct: 129 YCHERKVI----HRDIKPENLLMGYKGELKIADFGW 160

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 31/193 (16%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLL 681
                     V++K I  GA       +FI    +   + H  L++L G C  +    L+
Sbjct: 25  HLGYWLNKDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLV 81

Query: 682 YDYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
            +++ +G LS+ +RT+R   A   ++   L V  G+ +L   C   I H DL A N +  
Sbjct: 82  TEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV--I-HRDLAARNCLVG 138

Query: 739 ENMEPHLAEFGF-KYL-----TQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYG 787
           EN    +++FG  +++     T      FP K  W   E      + +        DV+ 
Sbjct: 139 ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVK--WASPEVFSFSRYSSK------SDVWS 190

Query: 788 FGEIILEILTNGR 800
           FG ++ E+ + G+
Sbjct: 191 FGVLMWEVFSEGK 203

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 31/186 (16%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V +K IE  + R +            G++ H +++RLLG C       L+  YLP G+
Sbjct: 43  IPVCIKVIEDKSGR-QSFQAVTDHMLAIGSLDHAHIVRLLGLC-PGSSLQLVTQYLPLGS 100

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L + +R  R       ++   + +A+G+ +L       + H +L A N++     +  +A
Sbjct: 101 LLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGM--V-HRNLAARNVLLKSPSQVQVA 157

Query: 747 EFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIILE 794
           +FG              ++   P K  W   ES   G++ +        DV+ +G  + E
Sbjct: 158 DFGVADLLPPDDKQLLYSEAKTPIK--WMALESIHFGKYTHQ------SDVWSYGVTVWE 209

Query: 795 ILTNGR 800
           ++T G 
Sbjct: 210 LMTFGA 215

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 54/268 (20%), Positives = 109/268 (40%), Gaps = 47/268 (17%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQA--YLLYDYL 685
           TG  V+VKK++      + + +F   I    +++H N+++  G CY+  +    L+ +YL
Sbjct: 38  TGEVVAVKKLQHSTE--EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL 95

Query: 686 PNGNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
           P G+L + ++  ++     K++     + +G+ +L    Y  I H DL   NI+ +    
Sbjct: 96  PYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY--I-HRDLATRNILVENENR 152

Query: 743 PHLAEFGF--------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFG 789
             + +FG         ++      G  P  I W   ES    +F  A       DV+ FG
Sbjct: 153 VKIGDFGLTKVLPQDKEFFKVKEPGESP--IFWYAPESLTESKFSVA------SDVWSFG 204

Query: 790 EIILEILTNGRLTNAGSSLQNKPIDGL-LGEMYNENEVGSSSSLQDEIKL---------V 839
            ++ E+ T    + +  +   + I     G+M     +     L++  +L         +
Sbjct: 205 VVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVF-HL--IELLKNNGRLPRPDGCPDEI 261

Query: 840 LDVALLCTRSTPSDRPSMEEALKLLSGL 867
             +   C  +  + RPS  +    +  +
Sbjct: 262 YMIMTECWNNNVNQRPSFRDLALRVDQI 289

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 33/194 (17%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLL 681
                     V+VK I+ G+       EF    +    + H  L++  G C   +  Y++
Sbjct: 25  KLGKWKGQYDVAVKMIKEGSMS---EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIV 81

Query: 682 YDYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
            +Y+ NG L   +R+        +++     V  G+ FL    +  I H DL A N + D
Sbjct: 82  TEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF--I-HRDLAARNCLVD 138

Query: 739 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVY 786
            ++   +++FG        +Y++      FP K  W+  E     ++ +        DV+
Sbjct: 139 RDLCVKVSDFGMTRYVLDDQYVSS-VGTKFPVK--WSAPEVFHYFKYSSK------SDVW 189

Query: 787 GFGEIILEILTNGR 800
            FG ++ E+ + G+
Sbjct: 190 AFGILMWEVFSLGK 203

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 47/255 (18%), Positives = 89/255 (34%), Gaps = 45/255 (17%)

Query: 631 TGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLG----FCYNRHQAYLLY 682
           T + V+  +++      + R +   E    +  ++H N++R           +    L+ 
Sbjct: 50  TTVEVAWCELQDRKLTKSERQRFKEE-AEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108

Query: 683 DYLPNGNLSEKI-RTKR-DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-E 739
           + + +G L   + R K             + +GL FLH    P I H DLK  NI     
Sbjct: 109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLH-TRTPPIIHRDLKCDNIFITGP 167

Query: 740 NMEPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM-------DVYGFGEI 791
                + + G           +      +         M  EMY        DVY FG  
Sbjct: 168 TGSVKIGDLGLATLKRASFAKAVIGTPEF---------MAPEMYEEKYDESVDVYAFGMC 218

Query: 792 ILEILTN----GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCT 847
           +LE+ T+        NA + +  +   G+    +++        +++ I+        C 
Sbjct: 219 MLEMATSEYPYSECQNA-AQIYRRVTSGVKPASFDKVA---IPEVKEIIE-------GCI 267

Query: 848 RSTPSDRPSMEEALK 862
           R    +R S+++ L 
Sbjct: 268 RQNKDERYSIKDLLN 282

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 33/197 (16%)

Query: 625 CKAVLPTG---ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQA 678
            K          TV+VK ++  A    +  E +    +   + +  ++R++G C      
Sbjct: 34  KKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92

Query: 679 YLLYDYLPNGNLSEKIRTKRDWAAK--YKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
            L+ +    G L++ ++  R    K   ++V  V+ G+ +L    +  + H DL A N++
Sbjct: 93  MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNF--V-HRDLAARNVL 149

Query: 737 FDENMEPHLAEFGF-KYLTQLAD-------GSFPAKIAWT--ES---GEFYNAMKEEMYM 783
                   +++FG  K L    +       G +P  + W   E     +F +        
Sbjct: 150 LVTQHYAKISDFGLSKALRADENYYKAQTHGKWP--VKWYAPECINYYKFSSK------S 201

Query: 784 DVYGFGEIILEILTNGR 800
           DV+ FG ++ E  + G+
Sbjct: 202 DVWSFGVLMWEAFSYGQ 218

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 39/194 (20%), Positives = 81/194 (41%), Gaps = 33/194 (17%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLL 681
                     V++K I+ G+       EFI   ++   + H+ L++L G C  +   +++
Sbjct: 41  KYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII 97

Query: 682 YDYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
            +Y+ NG L   +R  R      +++     V   + +L    +  + H DL A N + +
Sbjct: 98  TEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQF--L-HRDLAARNCLVN 154

Query: 739 ENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVY 786
           +     +++FG        +Y +      FP +  W+  E     +F +        D++
Sbjct: 155 DQGVVKVSDFGLSRYVLDDEYTSS-VGSKFPVR--WSPPEVLMYSKFSSK------SDIW 205

Query: 787 GFGEIILEILTNGR 800
            FG ++ EI + G+
Sbjct: 206 AFGVLMWEIYSLGK 219

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 37/196 (18%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLL 681
                     V+VK ++ G+        F+        ++H+ L+RL      +   Y++
Sbjct: 30  WMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV-TQEPIYII 85

Query: 682 YDYLPNGNLSEKIRTKRDWAAKYK----IVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
            +Y+ NG+L + ++T             +   +A G+ F+    Y  I H DL+A+NI+ 
Sbjct: 86  TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNY--I-HRDLRAANILV 142

Query: 738 DENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDV 785
            + +   +A+FG        +Y T      FP K  WT  E+   G F          DV
Sbjct: 143 SDTLSCKIADFGLARLIEDNEY-TAREGAKFPIK--WTAPEAINYGTFTIK------SDV 193

Query: 786 YGFGEIIL-EILTNGR 800
           + FG I+L EI+T+GR
Sbjct: 194 WSFG-ILLTEIVTHGR 208

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 629 LPTGITVSVK-----KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
           + TG+ V++K      +       ++ +E +     ++H +++ L  +  + +  YL+ +
Sbjct: 33  IHTGLEVAIKMIDKKAMYKAGMVQRVQNE-VKIHCQLKHPSILELYNYFEDSNYVYLVLE 91

Query: 684 YLPNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
              NG ++  ++ +      + A  +  +  +  G+ +LH      I H DL  SN++  
Sbjct: 92  MCHNGEMNRYLKNRVKPFSENEARHF--MHQIITGMLYLHSHG---ILHRDLTLSNLLLT 146

Query: 739 ENMEPHLAEFGF 750
            NM   +A+FG 
Sbjct: 147 RNMNIKIADFGL 158

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 629 LPTGITVSVK-----KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
             T    + K      +     R K+  E I+   ++ H++++   GF  +    +++ +
Sbjct: 37  ADTKEVFAGKIVPKSLLLKPHQREKMSME-ISIHRSLAHQHVVGFHGFFEDNDFVFVVLE 95

Query: 684 YLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
                +L E  + ++      A  Y  +  +  G  +LH +    + H DLK  N+  +E
Sbjct: 96  LCRRRSLLELHKRRKALTEPEARYY--LRQIVLGCQYLHRNR---VIHRDLKLGNLFLNE 150

Query: 740 NMEPHLAEFGF 750
           ++E  + +FG 
Sbjct: 151 DLEVKIGDFGL 161

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 629 LPTGITVSVK-----KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
             T    + K      +     R K+  E I+   ++ H++++   GF  +    +++ +
Sbjct: 63  ADTKEVFAGKIVPKSLLLKPHQREKMSME-ISIHRSLAHQHVVGFHGFFEDNDFVFVVLE 121

Query: 684 YLPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
                +L E  + ++      A  Y  +  +  G  +LH +    + H DLK  N+  +E
Sbjct: 122 LCRRRSLLELHKRRKALTEPEARYY--LRQIVLGCQYLHRNR---VIHRDLKLGNLFLNE 176

Query: 740 NMEPHLAEFGF 750
           ++E  + +FG 
Sbjct: 177 DLEVKIGDFGL 187

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 50/212 (23%)

Query: 625 CKAVL---PTGITVSVKKIEWGAT---RIKIVSEF--ITRIGTVRHKNLIRLLGFCYNRH 676
            KA +      +  ++K+++  A+         E   + ++G   H N+I LLG C +R 
Sbjct: 42  LKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG--HHPNIINLLGACEHRG 99

Query: 677 QAYLLYDYLPNGNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFLH 718
             YL  +Y P+GNL + +R  R                             VARG+ +L 
Sbjct: 100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 159

Query: 719 HDCYPAIPHGDLKASNIVFDENMEPHLAEFGF----KYLTQLADGSFPAKIAWT--ESGE 772
              +  I H DL A NI+  EN    +A+FG     +   +   G  P +  W   ES  
Sbjct: 160 QKQF--I-HRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVR--WMAIES-- 212

Query: 773 FYNAMKEEMYM---DVYGFGEIIL-EILTNGR 800
               +   +Y    DV+ +G ++L EI++ G 
Sbjct: 213 ----LNYSVYTTNSDVWSYG-VLLWEIVSLGG 239

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 57/267 (21%), Positives = 101/267 (37%), Gaps = 72/267 (26%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRIG-------TVRHKNLIRLLGFCYNRHQAYLL 681
           + TG  V++K I+    + ++    + ++         + H N+++L          YL+
Sbjct: 37  ILTGREVAIKIID----KTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92

Query: 682 YDYLPNGNLSEKI----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
            +Y   G + + +    R K   A     +IV  V     + H      I H DLKA N+
Sbjct: 93  MEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQ----YCHQKR---IVHRDLKAENL 145

Query: 736 VFDENMEPHLAEFGFKYLTQLADGSF------------PAKIAWTESGEFYNAMKEEMYM 783
           + D +M   +A+FGF    +   G              P        G+ Y+  +    +
Sbjct: 146 LLDADMNIKIADFGFS--NEFTVGGKLDAFCGAPPYAAPELF----QGKKYDGPE----V 195

Query: 784 DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGL-LGEMYNENEVGS-------SSSLQDE 835
           DV+  G +IL  L +G L          P DG  L E+      G        S+  ++ 
Sbjct: 196 DVWSLG-VILYTLVSGSL----------PFDGQNLKELRERVLRGKYRIPFYMSTDCENL 244

Query: 836 IKLVLDVALLCTRSTPSDRPSMEEALK 862
           +K  L +        P  R ++E+ +K
Sbjct: 245 LKRFLVL-------NPIKRGTLEQIMK 264

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 34/204 (16%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQA--YLLYDYL 685
           TG  V+VKK++      + + +F   I    +++H N+++  G CY+  +    L+ +YL
Sbjct: 69  TGEVVAVKKLQHSTE--EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL 126

Query: 686 PNGNLSEKIRTKRDWAAKYKIVL---GVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
           P G+L + ++  ++     K++     + +G+ +L    Y  I H DL   NI+ +    
Sbjct: 127 PYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRY--I-HRDLATRNILVENENR 183

Query: 743 PHLAEFGF--------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFG 789
             + +FG         +Y      G  P  I W   ES    +F  A       DV+ FG
Sbjct: 184 VKIGDFGLTKVLPQDKEYYKVKEPGESP--IFWYAPESLTESKFSVA------SDVWSFG 235

Query: 790 EIILEILTNGRLTNAGSSLQNKPI 813
            ++ E+ T    + +  +   + I
Sbjct: 236 VVLYELFTYIEKSKSPPAEFMRMI 259

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 28/185 (15%)

Query: 635 VSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKI 694
           V      W      I ++ + R+        ++       ++ + L+ +    G L   I
Sbjct: 102 VQKPANPW---EFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAI 158

Query: 695 RTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
              ++   K           + +   +  +H      I HGD+K  N +          E
Sbjct: 159 NLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDE 215

Query: 748 FGFKYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMYM--------------DVYGFGEII 792
                   L D G       + +   F    +   +               D +G    +
Sbjct: 216 DDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATV 275

Query: 793 LEILT 797
             +L 
Sbjct: 276 YCMLF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 26/216 (12%)

Query: 297 SIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDI 356
            +        V    +  S     +L   LS CS L  L LE    S  I    ++  ++
Sbjct: 85  PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144

Query: 357 NYIDLSR-NGFT-GGIPTDINQASKLEYFNVSNNPKLG--GMIPAQTWSLPSLQNFSASA 412
             ++LS  +GF+   + T ++  S+L+  N+S         +  A      ++   + S 
Sbjct: 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204

Query: 413 CNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIP-EVLA 471
                        K++             +   V  C  L  +DL+++ ++ +   +   
Sbjct: 205 Y-----------RKNLQ---------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244

Query: 472 RLPVLGVLDLSH-NSLSGQIPAKFGSCSSLTVLNVS 506
           +L  L  L LS    +  +   + G   +L  L V 
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 35/227 (15%), Positives = 73/227 (32%), Gaps = 30/227 (13%)

Query: 290 STNNFNGSIPPDICSGGVLFKLILFS--NNFTGSLSPSLSNCSSLVRLRLEDNSFS-GEI 346
           + +    ++ PD+    +   +I F    +F         +   +  + L ++      +
Sbjct: 51  TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110

Query: 347 PLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLG-GMIPAQTWSLPSL 405
               SQ   +  + L     +  I   + + S L   N+S         +     S   L
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 406 QNFSASAC-NITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLAN-NKLI 463
              + S C + T           + V  +H                 + +++L+   K +
Sbjct: 171 DELNLSWCFDFTEK--------HVQVAVAH-------------VSETITQLNLSGYRKNL 209

Query: 464 G--SIPEVLARLPVLGVLDLSH-NSLSGQIPAKFGSCSSLTVLNVSF 507
               +  ++ R P L  LDLS    L      +F   + L  L++S 
Sbjct: 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 35/198 (17%)

Query: 625 CKAVLPTG---ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQA 678
            + V       I V++K ++ G  +     E +   +I   + +  ++RL+G C      
Sbjct: 353 RQGVYRMRKKQIDVAIKVLKQGTEK-ADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEAL 410

Query: 679 YLLYDYLPNGNLSEKIRTKRD---WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
            L+ +    G L + +  KR+    +   +++  V+ G+ +L    +  + H +L A N+
Sbjct: 411 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF--V-HRNLAARNV 467

Query: 736 VFDENMEPHLAEFGF--------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMY 782
           +        +++FG          Y T  + G +P  + W   E     +F +       
Sbjct: 468 LLVNRHYAKISDFGLSKALGADDSYYTARSAGKWP--LKWYAPECINFRKFSSR------ 519

Query: 783 MDVYGFGEIILEILTNGR 800
            DV+ +G  + E L+ G+
Sbjct: 520 SDVWSYGVTMWEALSYGQ 537

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 44/272 (16%), Positives = 89/272 (32%), Gaps = 58/272 (21%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGF-------------CYNRHQ 677
                ++KKI     ++  +   +  + ++ H+ ++R                    +  
Sbjct: 30  DSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKST 89

Query: 678 AYLLYDYLPNGNLSEKIRTK-----RDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDL 730
            ++  +Y  NG L + I ++     RD   +   +I+  ++    ++H      I H DL
Sbjct: 90  LFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALS----YIHSQ---GIIHRDL 142

Query: 731 KASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMK-EEMYM----- 783
           K  NI  DE+    + +FG  K + +  D           S +   +     MY+     
Sbjct: 143 KPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202

Query: 784 ----------DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN---ENEVGSSS 830
                     D+Y  G II   +     T      +   +  L         + +     
Sbjct: 203 DGTGHYNEKIDMYSLG-IIFFEMIYPFSTG---MERVNILKKLRSVSIEFPPDFDDNKMK 258

Query: 831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
             +  I+L++D         P+ RP     L 
Sbjct: 259 VEKKIIRLLIDH-------DPNKRPGARTLLN 283

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
            +  G +        ELE +   N   + SI   L +L  L  L+LS N +SG +     
Sbjct: 28  RSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85

Query: 496 SCSSLTVLNVSFNDIS 511
            C +LT LN+S N I 
Sbjct: 86  KCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 158 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 217
                E+++L      L+ SI   L  L KL+ L L  N+++G +     +   L  L+L
Sbjct: 38  TDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95

Query: 218 SDNRLSGP-IPESFADLKNLRLLSLMYN---EMSGTVPESLVQLPSLEIL 263
           S N++      E    L+NL+ L L       ++         LP L  L
Sbjct: 96  SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 401 SLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANN 460
               L+  S     +T ++        +  +E   N +SG +      C  L  ++L+ N
Sbjct: 40  EFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 461 KLIGSIPEV--LARLPVLGVLDLSHN 484
           K I  +  +  L +L  L  LDL + 
Sbjct: 99  K-IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 184 NLTKLESLFLFRNQL-AGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM 242
             + ++ L L  ++   G++         L+ L   +  L+     +   L  L+ L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 243 YNEMSGTVPESLVQLPSLEILFIWNNYFSG-SLPENLGRNSKLRWVDVSTN 292
            N +SG +     + P+L  L +  N     S  E L +   L+ +D+   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 59/276 (21%), Positives = 102/276 (36%), Gaps = 73/276 (26%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT---RIGTVRHKNLIRLLGFC-----YNRHQAYLLYDY 684
           + V+VK ++   +  + + EF++    +    H N+IRLLG C         +  ++  +
Sbjct: 63  LKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPF 122

Query: 685 LPNGNLSEKIRTKRDWAAKY--------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
           +  G+L   +   R              K ++ +A G+ +L +  +  + H DL A N +
Sbjct: 123 MKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNF--L-HRDLAARNCM 179

Query: 737 FDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMD 784
             ++M   +A+FG         Y  Q      P K  W   ES     + +        D
Sbjct: 180 LRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVK--WIAIESLADRVYTSK------SD 231

Query: 785 VYGFGEIILEILTNGR-----LTNA--------GSSLQNKPIDGLLGEMYNENEVGSSSS 831
           V+ FG  + EI T G      + N         G  L+ +P +  L E+Y          
Sbjct: 232 VWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLK-QP-EDCLDELYE--------- 280

Query: 832 LQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                     +   C R+ P DRP+       L  L
Sbjct: 281 ----------IMYSCWRTDPLDRPTFSVLRLQLEKL 306

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 49/240 (20%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
           SVP+ I      + L+L  +  +    + F     L +L+L  N L   + A        
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSA-------- 76

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLA 199
                        +   L  +     L +A   L+ S+P  +  +LT+L+ L+L  NQL 
Sbjct: 77  ------------GVFDDLTEL---GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK 120

Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPES-FADLKNLRLLSLMYNEMSGTVPESLVQLP 258
                 F R+T LK L L+ N+L   IP   F  L NL+ LSL  N++      +  +L 
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179

Query: 259 SLEILFIWNN----------YFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDI--CSGG 306
            L+ + ++ N          Y S  + EN     K++       + +    PD   CS G
Sbjct: 180 KLQTITLFGNQFDCSRCEILYLSQWIRENSN---KVKDGTGQNLHES----PDGVTCSDG 232

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 18/172 (10%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
           S+P  +   T  E L L    LA      F  +T L  L+L  N+L       F DL  L
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 237 RLLSLMYNEMSGTVPESLV-QLPSLEILFIWNNYFSGSLPENLGRN-SKLRWVDVSTNNF 294
             L L  N+++ ++P  +   L  L+ L++  N    SLP  +    +KL+ + ++TN  
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143

Query: 295 NGSIPPDICSGGV------LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDN 340
             SIP      G       L  L L +N        +      L  + L  N
Sbjct: 144 Q-SIPA-----GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 18/172 (10%)

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTL 212
            IP      ++ + LD+    L+         LTKL  L L  NQL       F  +T L
Sbjct: 32  GIP------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 213 KSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE----SLVQLPSLEILFIWNN 268
            +L L++N+L+      F  L  L  L L  N++  ++P      L +   L+ L +  N
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK---LKELRLNTN 141

Query: 269 YFSGSLPENLGRN-SKLRWVDVSTNNFNGSIPPDICSG-GVLFKLILFSNNF 318
               S+P       + L+ + +STN    S+P       G L  + LF N F
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 31/187 (16%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           + V++K ++ G T  +   +F++     G   H N+IRL G       A ++ +Y+ NG+
Sbjct: 78  VPVAIKALKAGYTE-RQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGS 136

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   +RT        ++V    GV  G+ +L    Y  + H DL A N++ D N+   ++
Sbjct: 137 LDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY--V-HRDLAARNVLVDSNLVCKVS 193

Query: 747 EFGF-KYLTQLAD-------GSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIIL 793
           +FG  + L    D       G  P +  WT  E+     F +A       DV+ FG ++ 
Sbjct: 194 DFGLSRVLEDDPDAAYTTTGGKIPIR--WTAPEAIAFRTFSSA------SDVWSFGVVMW 245

Query: 794 EILTNGR 800
           E+L  G 
Sbjct: 246 EVLAYGE 252

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 67/282 (23%), Positives = 108/282 (38%), Gaps = 80/282 (28%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           +TV+VK ++  AT      +VSE        +HKN+I LLG C      Y++ +Y   GN
Sbjct: 68  VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGN 127

Query: 690 LSEKIRTKRDWAAKY------------------KIVLGVARGLCFLHHDCYPAIPHGDLK 731
           L E +R +R    +Y                       +ARG+ +L       I H DL 
Sbjct: 128 LREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC--I-HRDLA 184

Query: 732 ASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMY 782
           A N++  EN    +A+FG         Y  +  +G  P K  W   E+      + + +Y
Sbjct: 185 ARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEA------LFDRVY 236

Query: 783 M---DVYGFGEIIL-EILTNGR-----LTNA--------GSSLQNKPIDGLLGEMYNENE 825
               DV+ FG +++ EI T G      +           G  +  KP      E+Y    
Sbjct: 237 THQSDVWSFG-VLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMD-KP-ANCTNELYM--- 290

Query: 826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                           +   C  + PS RP+ ++ ++ L  +
Sbjct: 291 ----------------MMRDCWHAVPSQRPTFKQLVEDLDRI 316

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 35/198 (17%)

Query: 625 CKAVLPTG---ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQA 678
            + V       I V++K ++ G  +     E +   +I   + +  ++RL+G C      
Sbjct: 27  RQGVYRMRKKQIDVAIKVLKQGTEK-ADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEAL 84

Query: 679 YLLYDYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNI 735
            L+ +    G L + +  KR+      +      V+ G+ +L    +  + H DL A N+
Sbjct: 85  MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF--V-HRDLAARNV 141

Query: 736 VFDENMEPHLAEFGF--------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMY 782
           +        +++FG          Y T  + G +P  + W   E     +F +       
Sbjct: 142 LLVNRHYAKISDFGLSKALGADDSYYTARSAGKWP--LKWYAPECINFRKFSSR------ 193

Query: 783 MDVYGFGEIILEILTNGR 800
            DV+ +G  + E L+ G+
Sbjct: 194 SDVWSYGVTMWEALSYGQ 211

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 54/277 (19%), Positives = 97/277 (35%), Gaps = 74/277 (26%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT---RIGTVRHKNLIRLLGFC------YNRHQAYLLYD 683
           + V+VK ++        + EF+     +    H ++ +L+G               ++  
Sbjct: 52  VKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILP 111

Query: 684 YLPNGNLSEKIRTKRDWAAKYKIVLG--------VARGLCFLHHDCYPAIPHGDLKASNI 735
           ++ +G+L   +   R     + + L         +A G+ +L    +  I H DL A N 
Sbjct: 112 FMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNF--I-HRDLAARNC 168

Query: 736 VFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYM 783
           +  E+M   +A+FG         Y  Q      P K  W   ES     +          
Sbjct: 169 MLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVK--WLALESLADNLYTVH------S 220

Query: 784 DVYGFGEIILEILTNGR-----LTNA--------GSSLQNKPIDGLLGEMYNENEVGSSS 830
           DV+ FG  + EI+T G+     + NA        G+ L+ +P    + E+Y+        
Sbjct: 221 DVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLK-QP-PECMEEVYD-------- 270

Query: 831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                      +   C  + P  RPS       L  +
Sbjct: 271 -----------LMYQCWSADPKQRPSFTCLRMELENI 296

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 69/284 (24%), Positives = 111/284 (39%), Gaps = 84/284 (29%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEF--ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           +TV+VK ++  AT      +VSE   +  IG  +HKN+I LLG C      Y++ +Y   
Sbjct: 114 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIG--KHKNIINLLGACTQDGPLYVIVEYASK 171

Query: 688 GNLSEKIRTKRDWAAKY------------------KIVLGVARGLCFLHHDCYPAIPHGD 729
           GNL E +R +R    +Y                       +ARG+ +L       I H D
Sbjct: 172 GNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC--I-HRD 228

Query: 730 LKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKEE 780
           L A N++  EN    +A+FG         Y  +  +G  P K  W   E+      + + 
Sbjct: 229 LAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVK--WMAPEA------LFDR 280

Query: 781 MYM---DVYGFGEIIL-EILTNGR-----LTNA--------GSSLQNKPIDGLLGEMYNE 823
           +Y    DV+ FG +++ EI T G      +           G  +  KP      E+Y  
Sbjct: 281 VYTHQSDVWSFG-VLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMD-KP-ANCTNELYM- 336

Query: 824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                             +   C  + PS RP+ ++ ++ L  +
Sbjct: 337 ------------------MMRDCWHAVPSQRPTFKQLVEDLDRI 362

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
            +  G I    +  V LE + L N   + S+   L +LP L  L+LS N + G +     
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 496 SCSSLTVLNVSFNDIS 511
              +LT LN+S N + 
Sbjct: 93  KLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 158 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 217
                 +++L +    L  S+   L  L KL+ L L  N++ G +     ++  L  L+L
Sbjct: 45  TAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102

Query: 218 SDNRLSGP-IPESFADLKNLRLLSLMYN---EMSGTVPESLVQLPSLEIL 263
           S N+L      E    L+ L+ L L       ++         LP L  L
Sbjct: 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 401 SLPSLQNFSASACNIT--GNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLA 458
              +L+  S     +    NLP     K + +     N + G +         L  ++L+
Sbjct: 47  EFVNLEFLSLINVGLISVSNLPKLPKLKKLEL---SENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 459 NNKLIGSIPEV--LARLPVLGVLDLSHNSLS 487
            NK +  I  +  L +L  L  LDL +  ++
Sbjct: 104 GNK-LKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 29/158 (18%)

Query: 211 TLKSLDLSDNRLS-GPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 269
            ++ L L + + + G I    A+  NL  LSL+   +      +L +LP L+ L +  N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR 82

Query: 270 FSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNC 329
             G L     +   L  +++S N        DI                  +L P L   
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLK-----DI-----------------STLEP-LKKL 119

Query: 330 SSLVRLRLEDNSFSGEIPLK---FSQLPDINYIDLSRN 364
             L  L L +   +     +   F  LP + Y+D    
Sbjct: 120 ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 184 NLTKLESLFLFRNQLA-GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM 242
               +  L L   +   G++    +    L+ L L +  L      +   L  L+ L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELS 79

Query: 243 YNEMSGTVPESLVQLPSLEILFIWNNYFS--GSLPENLGRNSKLRWVDVSTN 292
            N + G +     +LP+L  L +  N      +L E L +   L+ +D+   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 67/281 (23%), Positives = 108/281 (38%), Gaps = 84/281 (29%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEF--ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
             V+VK ++  AT      ++SE   +  IG  +HKN+I LLG C      Y++ +Y   
Sbjct: 102 TKVAVKMLKSDATEKDLSDLISEMEMMKMIG--KHKNIINLLGACTQDGPLYVIVEYASK 159

Query: 688 GNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFLHHDCYPAIPHGD 729
           GNL E ++ +R    +Y                       VARG+ +L       I H D
Sbjct: 160 GNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKC--I-HRD 216

Query: 730 LKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKEE 780
           L A N++  E+    +A+FG         Y  +  +G  P K  W   E+      + + 
Sbjct: 217 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVK--WMAPEA------LFDR 268

Query: 781 MYM---DVYGFGEIIL-EILTNGR-----LTNA--------GSSLQNKPIDGLLGEMYNE 823
           +Y    DV+ FG ++L EI T G      +           G  +  KP      E+Y  
Sbjct: 269 IYTHQSDVWSFG-VLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMD-KP-SNCTNELYM- 324

Query: 824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL 864
                             +   C  + PS RP+ ++ ++ L
Sbjct: 325 ------------------MMRDCWHAVPSQRPTFKQLVEDL 347

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 35/199 (17%)

Query: 625 CKAVLPTG----ITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQ 677
           C   L       I+V++K ++ G T  K   +F+      G   H N+IRL G       
Sbjct: 62  CSGRLKLPSKKEISVAIKTLKVGYTE-KQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKP 120

Query: 678 AYLLYDYLPNGNLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASN 734
             ++ +Y+ NG+L   +R         ++V    G+A G+ +L    Y  + H DL A N
Sbjct: 121 VMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGY--V-HRDLAARN 177

Query: 735 IVFDENMEPHLAEFGF-------KYLTQLADGS-FPAKIAWT--ES---GEFYNAMKEEM 781
           I+ + N+   +++FG                G   P +  WT  E+    +F +A     
Sbjct: 178 ILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIR--WTSPEAIAYRKFTSA----- 230

Query: 782 YMDVYGFGEIILEILTNGR 800
             DV+ +G ++ E+++ G 
Sbjct: 231 -SDVWSYGIVLWEVMSYGE 248

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKR--DWAAKYKIVLGVAR----- 712
           ++++  +   G   N  + Y++Y+Y+ N ++ +        D      I + V +     
Sbjct: 100 IKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKS 159

Query: 713 ---GLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
                 ++H+     I H D+K SNI+ D+N    L++FG 
Sbjct: 160 VLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGE 198

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 48/202 (23%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEF--ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           + V+VK ++  A    +  ++SE   ++ +G  +H+N++ LLG C +     ++ +Y   
Sbjct: 77  LKVAVKMLKSTAHADEKEALMSELKIMSHLG--QHENIVNLLGACTHGGPVLVITEYCCY 134

Query: 688 GNLSEKIRTKRDWAAKY----------------KIVLGVARGLCFLHHDCYPAIPHGDLK 731
           G+L   +R K                            VA+G+ FL       I H D+ 
Sbjct: 135 GDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNC--I-HRDVA 191

Query: 732 ASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMY 782
           A N++        + +FG               +   P K  W   ES      + + +Y
Sbjct: 192 ARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVK--WMAPES------IFDCVY 243

Query: 783 M---DVYGFGEIIL-EILTNGR 800
               DV+ +G I+L EI + G 
Sbjct: 244 TVQSDVWSYG-ILLWEIFSLGL 264

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 52/206 (25%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEF--ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           +TV+VK ++  A    R  ++SE   ++ +G   H N++ LLG C       ++ +Y   
Sbjct: 54  MTVAVKMLKPSAHLTEREALMSELKVLSYLG--NHMNIVNLLGACTIGGPTLVITEYCCY 111

Query: 688 GNLSEKIRTKRDWAAKYKIVLG--------------------VARGLCFLHHDCYPAIPH 727
           G+L   +R KRD     K                        VA+G+ FL       I H
Sbjct: 112 GDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNC--I-H 168

Query: 728 GDLKASNIVFDENMEPHLAEFGFKYLTQLAD-------GSFPAKIAWT--ESGEFYNAMK 778
            DL A NI+        + +FG     +             P K  W   ES      + 
Sbjct: 169 RDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK--WMAPES------IF 220

Query: 779 EEMYM---DVYGFGEIIL-EILTNGR 800
             +Y    DV+ +G I L E+ + G 
Sbjct: 221 NCVYTFESDVWSYG-IFLWELFSLGS 245

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 38/185 (20%), Positives = 79/185 (42%), Gaps = 30/185 (16%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           + V++K  +   +   R K + E +T +    H ++++L+G     +  +++ +    G 
Sbjct: 419 MAVAIKTCKNCTSDSVREKFLQEALT-MRQFDHPHIVKLIGVI-TENPVWIIMELCTLGE 476

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   ++ ++       ++     ++  L +L    +  + H D+ A N++   N    L 
Sbjct: 477 LRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRF--V-HRDIAARNVLVSSNDCVKLG 533

Query: 747 EFGF-KYL-----TQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIILEI 795
           +FG  +Y+      + + G  P K  W   ES     F +A       DV+ FG  + EI
Sbjct: 534 DFGLSRYMEDSTYYKASKGKLPIK--WMAPESINFRRFTSA------SDVWMFGVCMWEI 585

Query: 796 LTNGR 800
           L +G 
Sbjct: 586 LMHGV 590

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 56/281 (19%), Positives = 98/281 (34%), Gaps = 85/281 (30%)

Query: 633 ITVSVKKIEWGAT-RIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
           ++V+VK ++     + + + +FI       ++ H+NLIRL G         ++ +  P G
Sbjct: 47  VSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVV-LTPPMKMVTELAPLG 105

Query: 689 NLSEKIRTKR---------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           +L +++R  +          +A        VA G+ +L    +  I H DL A N++   
Sbjct: 106 SLLDRLRKHQGHFLLGTLSRYAV------QVAEGMGYLESKRF--I-HRDLAARNLLLAT 156

Query: 740 NMEPHLAEFGF-KYLTQLAD-------GSFPAKIAWT--ES---GEFYNAMKEEMYMDVY 786
                + +FG  + L Q  D          P   AW   ES     F +A       D +
Sbjct: 157 RDLVKIGDFGLMRALPQNDDHYVMQEHRKVP--FAWCAPESLKTRTFSHA------SDTW 208

Query: 787 GFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL------ 840
            FG  + E+ T G+          +P  GL              +    +  +       
Sbjct: 209 MFGVTLWEMFTYGQ----------EPWIGL--------------NGSQILHKIDKEGERL 244

Query: 841 -----------DVALLCTRSTPSDRPSMEEALKLLSGLKPH 870
                      +V + C    P DRP+       L   +P 
Sbjct: 245 PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 48/275 (17%), Positives = 91/275 (33%), Gaps = 73/275 (26%)

Query: 630 PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           P+ + V+VK +    +    +  + E    I    H+N++R +G        ++L + + 
Sbjct: 58  PSPLQVAVKTLPEVCSEQDELDFLME-ALIISKFNHQNIVRCIGVSLQSLPRFILMELMA 116

Query: 687 NGNLSEKIRTKRDWAAKY---------KIVLGVARGLCFLHHDCYPAIPHGDLKASNI-- 735
            G+L   +R  R   ++           +   +A G  +L  + +  I H D+ A N   
Sbjct: 117 GGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHF--I-HRDIAARNCLL 173

Query: 736 -VFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMYM-- 783
                     + +FG         Y  +      P K  W   E+        E ++   
Sbjct: 174 TCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK--WMPPEA------FMEGIFTSK 225

Query: 784 -DVYGFGEIILEILTNGR-----LTNA--------GSSLQNKPIDGLLGEMYNENEVGSS 829
            D + FG ++ EI + G       +N         G  +   P     G +Y        
Sbjct: 226 TDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD-PP-KNCPGPVYR------- 276

Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL 864
                       +   C +  P DRP+    L+ +
Sbjct: 277 ------------IMTQCWQHQPEDRPNFAIILERI 299

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 54/273 (19%), Positives = 101/273 (36%), Gaps = 73/273 (26%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
             V++K +   A+   RI+ ++E    +      +++RLLG         ++ + +  G+
Sbjct: 56  TRVAIKTVNEAASMRERIEFLNEASV-MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGD 114

Query: 690 LSEKIRTKRDWAAKY------------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
           L   +R+ R   A              ++   +A G+ +L+ + +  + H DL A N + 
Sbjct: 115 LKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKF--V-HRDLAARNCMV 171

Query: 738 DENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMYM---DV 785
            E+    + +FG         Y  +   G  P +  W   ES      +K+ ++    DV
Sbjct: 172 AEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR--WMSPES------LKDGVFTTYSDV 223

Query: 786 YGFGEIILEILTNGR-----LTN--------AGSSLQNKPIDGLLGEMYNENEVGSSSSL 832
           + FG ++ EI T        L+N         G  L  KP D     ++           
Sbjct: 224 WSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLD-KP-DNCPDMLFE---------- 271

Query: 833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS 865
                L+      C +  P  RPS  E +  + 
Sbjct: 272 -----LMRM----CWQYNPKMRPSFLEIISSIK 295

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 32/221 (14%), Positives = 59/221 (26%), Gaps = 38/221 (17%)

Query: 662 HKNLIRLLG-FCYNRHQAYLLYDYLPNGNLSEKI---------RTKRDWAAKYKIVLGVA 711
            K +IR+          +          NL                    A+ ++ L V 
Sbjct: 157 KKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVI 216

Query: 712 RGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY---LTQLADGSFPAKIA-- 766
           R L  LHH     + H  L+  +IV D+     L  F          ++  S        
Sbjct: 217 RLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPPE 272

Query: 767 --WTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMY 821
                +   Y+  +  +     D +  G +I  I     L     +           E  
Sbjct: 273 LEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWC-ADLPITKDAALG------GSEWI 325

Query: 822 NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
             +       ++  ++  L            DR    +A++
Sbjct: 326 FRSCKNIPQPVRALLEGFLRY-------PKEDRLLPLQAME 359

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 48/275 (17%), Positives = 93/275 (33%), Gaps = 73/275 (26%)

Query: 630 PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           P+ + V+VK +    +    +  + E +  I    H+N++R +G        ++L + + 
Sbjct: 99  PSPLQVAVKTLPEVCSEQDELDFLMEALI-ISKFNHQNIVRCIGVSLQSLPRFILLELMA 157

Query: 687 NGNLSEKIRTKRDWAAKY---------KIVLGVARGLCFLHHDCYPAIPHGDLKASNI-- 735
            G+L   +R  R   ++           +   +A G  +L  + +  I H D+ A N   
Sbjct: 158 GGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHF--I-HRDIAARNCLL 214

Query: 736 -VFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMYM-- 783
                     + +FG         Y  +      P K  W   E+        E ++   
Sbjct: 215 TCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVK--WMPPEA------FMEGIFTSK 266

Query: 784 -DVYGFGEIILEILTNGR-----LTN--------AGSSLQNKPIDGLLGEMYNENEVGSS 829
            D + FG ++ EI + G       +N        +G  +   P     G +Y        
Sbjct: 267 TDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD-PP-KNCPGPVYR------- 317

Query: 830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL 864
                       +   C +  P DRP+    L+ +
Sbjct: 318 ------------IMTQCWQHQPEDRPNFAIILERI 340

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 61/272 (22%)

Query: 631 TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA--------- 678
                ++K+I        R K++ E +  +  + H  ++R       ++           
Sbjct: 29  DDCNYAIKRIRLPNRELAREKVMRE-VKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPK 87

Query: 679 ---YLLYDYLPNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL 730
              Y+        NL + +  +      + +    I L +A  + FLH      + H DL
Sbjct: 88  VYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS---KGLMHRDL 144

Query: 731 KASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMKEEM-----YM- 783
           K SNI F  +    + +FG    + Q  +           +     A          YM 
Sbjct: 145 KPSNIFFTMDDVVKVGDFGLVTAMDQDEE------EQTVLTPMPAYARHTGQVGTKLYMS 198

Query: 784 -------------DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS 830
                        D++  G I+ E+L                 +     ++ +       
Sbjct: 199 PEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQ----KYP 254

Query: 831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
                ++            +P +RP     ++
Sbjct: 255 CEYVMVQ-------DMLSPSPMERPEAINIIE 279

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 31/187 (16%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           + V++K ++ G T  K   +F+      G   H N+IRL G         ++ +Y+ NG 
Sbjct: 74  VPVAIKTLKAGYTE-KQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGA 132

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L + +R K    +  ++V    G+A G+ +L +  Y  + H DL A NI+ + N+   ++
Sbjct: 133 LDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY--V-HRDLAARNILVNSNLVCKVS 189

Query: 747 EFGF-------KYLTQLADGS-FPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIIL 793
           +FG           T    G   P +  WT  E+    +F +A       DV+ FG ++ 
Sbjct: 190 DFGLSRVLEDDPEATYTTSGGKIPIR--WTAPEAISYRKFTSA------SDVWSFGIVMW 241

Query: 794 EILTNGR 800
           E++T G 
Sbjct: 242 EVMTYGE 248

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 43/148 (29%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRIGT-------------VRHKNLIRLLGFCYNR 675
                 V VK I+    + K++ +                    V H N+I++L    N+
Sbjct: 46  KEKNKEVVVKFIK----KEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101

Query: 676 HQAYL----------LYDYL-PNGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCY 722
               L          L+ ++  +  L E +      A+    ++V  V     +L     
Sbjct: 102 GFFQLVMEKHGSGLDLFAFIDRHPRLDEPL------ASYIFRQLVSAVG----YLRLKD- 150

Query: 723 PAIPHGDLKASNIVFDENMEPHLAEFGF 750
             I H D+K  NIV  E+    L +FG 
Sbjct: 151 --IIHRDIKDENIVIAEDFTIKLIDFGS 176

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 184 NLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLM 242
            L  L  L L RNQL G  P  F   + ++ L L +N++   I    F  L  L+ L+L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLY 110

Query: 243 YNEMSGTVPE-SLVQLPSLEILFIWNN 268
            N++S  V   S   L SL  L + +N
Sbjct: 111 DNQIS-CVMPGSFEHLNSLTSLNLASN 136

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 33/189 (17%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-QAYLLYDYLPNG 688
           I  ++K +            + E +  +  + H N++ L+G         ++L  Y+ +G
Sbjct: 50  IQCAIKSLSRITEMQQVEAFLREGLL-MRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHG 108

Query: 689 NLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           +L + IR+ +       ++   L VARG+ +L    +  + H DL A N + DE+    +
Sbjct: 109 DLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKF--V-HRDLAARNCMLDESFTVKV 165

Query: 746 AEFGFK--------YLTQLADGS-FPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEI 791
           A+FG          Y  Q    +  P K  WT  ES     F          DV+ FG +
Sbjct: 166 ADFGLARDILDREYYSVQQHRHARLPVK--WTALESLQTYRFTTK------SDVWSFGVL 217

Query: 792 ILEILTNGR 800
           + E+LT G 
Sbjct: 218 LWELLTRGA 226

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFG 495
                 I    +   + + ID ++N+ I  + +    L  L  L +++N +         
Sbjct: 28  GYKIPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85

Query: 496 SCSSLTVLNVSFNDIS--------GSIPSGKVLRLMG 524
           +   LT L ++ N +          S+ S   L ++ 
Sbjct: 86  ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGP-IPESFADLKNLRLLS 240
              L +L++L +  N++          +  L  L L++N L      +  A LK+L  L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 241 LMYN---EMSGTVPESLVQLPSLEIL 263
           ++ N            + ++P + +L
Sbjct: 120 ILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           + +N  +   L L   ++   +    + +    ++D SDN +   + + F  L+ L+ L 
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLL 70

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFS--GSLPENLGRNSKLRWVDVSTN 292
           +  N +          LP L  L + NN     G L + L     L ++ +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 57/211 (27%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEF--ITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           I V+VK ++  A    R  ++SE   +T++G   H+N++ LLG C      YL+++Y   
Sbjct: 76  IQVAVKMLKEKADSSEREALMSELKMMTQLG--SHENIVNLLGACTLSGPIYLIFEYCCY 133

Query: 688 GNLSEKIRTKRDWAAKYKIVLG-------------------------VARGLCFLHHDCY 722
           G+L   +R+KR+  ++ +I                            VA+G+ FL     
Sbjct: 134 GDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSC 193

Query: 723 PAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEF 773
             + H DL A N++        + +FG               +   P K  W   ES   
Sbjct: 194 --V-HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVK--WMAPES--- 245

Query: 774 YNAMKEEMYM---DVYGFGEIIL-EILTNGR 800
              + E +Y    DV+ +G I+L EI + G 
Sbjct: 246 ---LFEGIYTIKSDVWSYG-ILLWEIFSLGV 272

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 35/190 (18%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCY-NRHQAYLLYDYLPNG 688
           I  +VK +          + ++E I  +    H N++ LLG C  +     ++  Y+ +G
Sbjct: 118 IHCAVKSLNRITDIGEVSQFLTEGII-MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHG 176

Query: 689 NLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           +L   IR +        ++   L VA+G+ FL    +  + H DL A N + DE     +
Sbjct: 177 DLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF--V-HRDLAARNCMLDEKFTVKV 233

Query: 746 AEFG----------FKYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGE 790
           A+FG               +      P K  W   ES    +F          DV+ FG 
Sbjct: 234 ADFGLARDMYDKEFDSVHNK-TGAKLPVK--WMALESLQTQKFTTK------SDVWSFGV 284

Query: 791 IILEILTNGR 800
           ++ E++T G 
Sbjct: 285 LLWELMTRGA 294

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 70/285 (24%), Positives = 106/285 (37%), Gaps = 84/285 (29%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEF--ITRIGTVRHKNLIRLLGFCYNRHQ-AYLLYDYLP 686
            TV+VK ++ GAT      ++SE   +  IG   H N++ LLG C        ++ ++  
Sbjct: 58  RTVAVKMLKEGATHSEHRALMSELKILIHIG--HHLNVVNLLGACTKPGGPLMVIVEFCK 115

Query: 687 NGNLSEKIRTKRDWAAKYKIVLG------------------VARGLCFLHHDCYPAIPHG 728
            GNLS  +R+KR+    YK+                     VA+G+ FL       I H 
Sbjct: 116 FGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC--I-HR 172

Query: 729 DLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGEFYNAMKE 779
           DL A NI+  E     + +FG            +  D   P K  W   E+      + +
Sbjct: 173 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLK--WMAPET------IFD 224

Query: 780 EMYM---DVYGFGEIILEILTNG--------------RLTNAGSSLQNKPIDGLLGEMYN 822
            +Y    DV+ FG ++ EI + G              R    G+ ++  P D    EMY 
Sbjct: 225 RVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMR-AP-DYTTPEMYQ 282

Query: 823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                                L C    PS RP+  E ++ L  L
Sbjct: 283 -------------------TMLDCWHGEPSQRPTFSELVEHLGNL 308

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 11/124 (8%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCY-NRHQAYLLYDYLPNG 688
           I  +VK +          + ++E I  +    H N++ LLG C  +     ++  Y+ +G
Sbjct: 54  IHCAVKSLNRITDIGEVSQFLTEGII-MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHG 112

Query: 689 NLSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           +L   IR +        ++   L VA+G+ +L    +  + H DL A N + DE     +
Sbjct: 113 DLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF--V-HRDLAARNCMLDEKFTVKV 169

Query: 746 AEFG 749
           A+FG
Sbjct: 170 ADFG 173

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 48/260 (18%)

Query: 631 TGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA--YLLYDY 684
            G  +  K++++G    A +  +VSE +  +  ++H N++R      +R     Y++ +Y
Sbjct: 30  DGKILVWKELDYGSMTEAEKQMLVSE-VNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY 88

Query: 685 LPNGNLSEKIRTKRDWAAKY------KIVLGVARGLCFLH--HDCYPAIPHGDLKASNIV 736
              G+L+  I                +++  +   L   H   D    + H DLK +N+ 
Sbjct: 89  CEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVF 148

Query: 737 FDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTESGE-FYNA---MKEEMY---MDVYGF 788
            D      L +FG  + L            A T  G  +Y +   M    Y    D++  
Sbjct: 149 LDGKQNVKLGDFGLARILNHDTS------FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSL 202

Query: 789 GEIILEILTNGRLTNAGS--SLQNKPIDGL---LGEMYNENEVGSSSSLQDEIKLVLDVA 843
           G ++ E+        A S   L  K  +G    +   Y       S  L + I  +L++ 
Sbjct: 203 GCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRY-------SDELNEIITRMLNL- 254

Query: 844 LLCTRSTPSDRPSMEEALKL 863
                     RPS+EE L+ 
Sbjct: 255 ------KDYHRPSVEEILEN 268

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 8e-07
 Identities = 43/328 (13%), Positives = 98/328 (29%), Gaps = 41/328 (12%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADL----KNLRLLSLMYNEMSGTVPESLVQL----PSLE 261
             +K+L + ++  S    +   +L     +L +L+    E +   P+ L  +     SL 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 262 ILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLIL--FSNNFT 319
            + +  ++    L       + L      + N +  +P    +     KL     S    
Sbjct: 224 SVKV-GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 320 GSLSPSLSNCSSLVRLRLEDNSFSGEIPLK-FSQLPDINYIDLSRNGFTGGIPTDINQAS 378
             +       + + +L L       E       + P++  ++        G+        
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342

Query: 379 KLEYFNVSNNPKLGGMIPAQTW-----------SLPSLQNFSASACNITGNLPPFKSCKS 427
           +L+   +       GM   +                 L+  +    +IT      +S +S
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN-----ESLES 397

Query: 428 ISVIESHMNNLSGTIPESVSNCVELERI-DLANNKLIGSIPEVLARLPVLGVLDLSHNS- 485
           I     ++ +        +      ERI DL  +  + S+   L     L          
Sbjct: 398 IGTYLKNLCDFR------LVLLDREERITDLPLDNGVRSL---LIGCKKLRRFAFYLRQG 448

Query: 486 -LSGQIPAKFGS-CSSLTVLNVSFNDIS 511
            L+    +  G    ++  + + +   S
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGES 476

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 40/261 (15%), Positives = 83/261 (31%), Gaps = 22/261 (8%)

Query: 325 SLSNCSSLVRLRLEDNSFSGEIPLK--FSQLPDINYIDLSRNGFTGGIPTDINQASK--- 379
           + +    L  L+L+  S      L    +    I  + +  + F+      +++ ++   
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 380 -LEYFNVS--NNPKLGGM-IPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHM 435
            LE  N       K+    +     +  SL +       I   +  FK+  ++       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIG--SIPEVLARLPVLGVLDLSHNSLSG-QIPA 492
            N    +PE   N V   ++       +G   +P +      +  LDL +  L       
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312

Query: 493 KFGSCSSLTVLNV-------SFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHAS 545
               C +L VL             ++      K LR+   +   G     G         
Sbjct: 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG---LVSQRG 369

Query: 546 VAILGKGTGKLKFVLLLCAGI 566
           +  L +G  +L+++ +  + I
Sbjct: 370 LIALAQGCQELEYMAVYVSDI 390

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 35/186 (18%), Positives = 73/186 (39%), Gaps = 32/186 (17%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           + V++K  +   +   +  +F+          H ++++L+G     +  +++ +    G 
Sbjct: 44  LAVAIKTCKNCTSD-SVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWIIMELCTLGE 101

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   ++ ++       ++     ++  L +L    +  + H D+ A N++   N    L 
Sbjct: 102 LRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRF--V-HRDIAARNVLVSSNDCVKLG 158

Query: 747 EFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIILE 794
           +FG         Y    + G  P K  W   ES     F +A       DV+ FG  + E
Sbjct: 159 DFGLSRYMEDSTYYKA-SKGKLPIK--WMAPESINFRRFTSA------SDVWMFGVCMWE 209

Query: 795 ILTNGR 800
           IL +G 
Sbjct: 210 ILMHGV 215

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 23/134 (17%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITR-IGT---VRHKNLIRLLGFCYNRHQAYLLYDY 684
             T   V+VK IE    R   + E + R I     +RH N++R            ++ +Y
Sbjct: 42  KLTKELVAVKYIE----RGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97

Query: 685 LPNGNLSEKI----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
              G L E+I    R   D A  +  +++ GV+    + H      I H DLK  N + D
Sbjct: 98  ASGGELYERICNAGRFSEDEARFFFQQLLSGVS----YCHSMQ---ICHRDLKLENTLLD 150

Query: 739 ENMEPHL--AEFGF 750
            +  P L   +FG+
Sbjct: 151 GSPAPRLKICDFGY 164

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 625 CKAV-LPTGITVSVKKIE-WGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY 682
             A+ + TG  V+++++      + +++   I  +   ++ N++  L       + +++ 
Sbjct: 37  YTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM 96

Query: 683 DYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           +YL  G+L++ +          A   +     + L FLH +    + H D+K+ NI+   
Sbjct: 97  EYLAGGSLTDVVTETCMDEGQIAA--VCRECLQALEFLHSN---QVIHRDIKSDNILLGM 151

Query: 740 NMEPHLAEFGF 750
           +    L +FGF
Sbjct: 152 DGSVKLTDFGF 162

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 29/220 (13%)

Query: 661 RHKNLIRLL-GFCYNRHQAYLLYDYLPNGNLSEKI---------RTKRDWAAKYKIVLGV 710
                 +L  G        YLL     + +L             R      A + +   +
Sbjct: 144 SQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQL 203

Query: 711 ARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF--KYLTQLADGSFPAKIAWT 768
            R    L       + HG     N+    +    L +     K  T+    S P      
Sbjct: 204 IRLAANLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVP---VTY 257

Query: 769 ESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRL---TNAGSSLQNKPIDGLLGEMYN 822
              EF NA     +   ++ +  G  I  +     L           +     L     +
Sbjct: 258 APREFLNA-STATFTHALNAWQLGLSIYRVWC-LFLPFGLVTPGIKGSWKRPSLRVPGTD 315

Query: 823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
               GS + L D +K ++    L        R    EA++
Sbjct: 316 SLAFGSCTPLPDFVKTLIG-RFLNFD--RRRRLLPLEAME 352

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 26/185 (14%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
             V +K ++           F     +   + HK+L+   G C    +  L+ +++  G+
Sbjct: 41  TEVLLKVLDKAHRNYSE--SFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGS 98

Query: 690 LSEKIRTKRD---WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI-VFDENMEPH- 744
           L   ++  ++      K ++   +A  + FL  +    I HG++ A NI +  E      
Sbjct: 99  LDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTL--I-HGNVCAKNILLIREEDRKTG 155

Query: 745 ------LAEFGF-KYLTQLADGSFPAKIAWT--ESGEFYNAMKEEMYMDVYGFGEIILEI 795
                 L++ G    +           I W   E  E    +      D + FG  + EI
Sbjct: 156 NPPFIKLSDPGISITVLPKDILQER--IPWVPPECIENPKNLNLA--TDKWSFGTTLWEI 211

Query: 796 LTNGR 800
            + G 
Sbjct: 212 CSGGD 216

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 58/390 (14%), Positives = 118/390 (30%), Gaps = 44/390 (11%)

Query: 164 VQYLDIAGANLSGSIPKELS-NLTKLESLFLFRNQLAGQVPWE--FSRVTTLKSLDLSDN 220
           ++ + +    ++    + ++ +    + L L   +           +    LK LDL ++
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

Query: 221 RLSGPIPESFADL----KNLRLLSL--MYNEMSGTVPESLVQ-LPSLEILFIWNNYFSGS 273
            +        +       +L  L++  + +E+S +  E LV   P+L+ L +        
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226

Query: 274 LPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV--------LFKLILFSNNFTGSLSPS 325
           L   L R  +L   ++ T  +   + PD+ SG          L  L  F +     L   
Sbjct: 227 LATLLQRAPQLE--ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284

Query: 326 LSNCSSLVRLRLEDNSFSGE-IPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFN 384
            S CS L  L L   +     +     Q P +  + +       G+    +    L    
Sbjct: 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344

Query: 385 VSNNPKLGGMIPAQ---------TWSLPSLQNFSASACNITG--------NLPPFKS--- 424
           V  +                   +   P L++       +T         N P       
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404

Query: 425 --CKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLS 482
              +  +     +  L       V +C +L R+ L+          +      + +L ++
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA 464

Query: 483 HNSLSGQ-IPAKFGSCSSLTVLNVSFNDIS 511
               S   +      C SL  L +      
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 72/465 (15%), Positives = 141/465 (30%), Gaps = 92/465 (19%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTS----LISLDISRNNFSGHFPGGI-QSLRNLLVLD-A 73
             D NL  + + G     I  ++S    L  + + R   +      I +S +N  VL  +
Sbjct: 79  FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138

Query: 74  FSNSFSGSVPAEISQ-LEHLKVLNLAGSYFSGPIPSQFGSF----KSLEFLHLAG--NLL 126
               FS    A I+    +LK L+L  S            F     SL  L+++   + +
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198

Query: 127 NDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLT 186
           +         L+ +                       ++ L +  A     +   L    
Sbjct: 199 SFSA------LERLVT-----------------RCPNLKSLKLNRAVPLEKLATLLQRAP 235

Query: 187 KLESLFLF------RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           +LE L         R  +   +    S    L+ L    + +   +P  ++    L  L+
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 241 LMYNEMSGTVPESLVQ-LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVS-TNNFNGSI 298
           L Y  +       L+   P L+ L++ +      L         LR + V  +  F    
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355

Query: 299 PPDICSGGV---------LFKLILFSNNFTG-SLSPSLSNCSSLVRLRLE---------- 338
              +   G+         L  ++ F    T  +L     N  ++ R RL           
Sbjct: 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415

Query: 339 -----DNSFSGEIPLKFSQL---------------------PDINYIDLSRNGFTG-GIP 371
                D  F   I      L                       +  + ++  G +  G+ 
Sbjct: 416 TLEPLDIGFG-AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474

Query: 372 TDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT 416
             ++    L    + + P     + A    L ++++   S+C+++
Sbjct: 475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 12/143 (8%)

Query: 614 EEAARPQSAAGCKAV-LPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC 672
           E+       +  KA+   TG  V++K++   +   +I+ E I+ +      ++++  G  
Sbjct: 35  EKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKE-ISIMQQCDSPHVVKYYGSY 93

Query: 673 YNRHQAYLLYDYLPNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPH 727
           +     +++ +Y   G++S+ IR +      D  A   I+    +GL +LH        H
Sbjct: 94  FKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIAT--ILQSTLKGLEYLHFM---RKIH 148

Query: 728 GDLKASNIVFDENMEPHLAEFGF 750
            D+KA NI+ +      LA+FG 
Sbjct: 149 RDIKAGNILLNTEGHAKLADFGV 171

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 626 KAV-LPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY 682
           K +   T   V++K I  E     I+ + + IT +       + +  G      + +++ 
Sbjct: 40  KGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM 99

Query: 683 DYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           +YL  G+  + +          A   I+  + +GL +LH +      H D+KA+N++  E
Sbjct: 100 EYLGGGSALDLLEPGPLDETQIAT--ILREILKGLDYLHSE---KKIHRDIKAANVLLSE 154

Query: 740 NMEPHLAEFGF 750
           + E  LA+FG 
Sbjct: 155 HGEVKLADFGV 165

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 625 CKAV-LPTGITVSVKKI---EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL 680
             A   PTG  V+V++I         +  +   +       H N++         ++ ++
Sbjct: 44  NLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103

Query: 681 LYDYLPNGNLSEKIRTKR------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 734
           +  ++  G+  + I T           A   I+ GV + L ++HH  Y  + H  +KAS+
Sbjct: 104 VTSFMAYGSAKDLICTHFMDGMNELAIAY--ILQGVLKALDYIHHMGY--V-HRSVKASH 158

Query: 735 IVFDENMEPHLAEFGF 750
           I+   + + +L+    
Sbjct: 159 ILISVDGKVYLSGLRS 174

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 13/137 (9%)

Query: 631 TGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
            G    +K+I         R +   E +  +  ++H N+++           Y++ DY  
Sbjct: 48  DGRQYVIKEINISRMSSKEREESRRE-VAVLANMKHPNIVQYRESFEENGSLYIVMDYCE 106

Query: 687 NGNLSEKIRTKRDWAAKYKIVLG----VARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
            G+L ++I  ++    +   +L     +   L  +H      I H D+K+ NI   ++  
Sbjct: 107 GGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGT 163

Query: 743 PHLAEFGF-KYLTQLAD 758
             L +FG  + L    +
Sbjct: 164 VQLGDFGIARVLNSTVE 180

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 12/132 (9%)

Query: 625 CKAV-LPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL 681
           C A    +G  V+VK +       R  + +E +  +   +H N++ +        + ++L
Sbjct: 62  CLAREKHSGRQVAVKMMDLRKQQRRELLFNE-VVIMRDYQHFNVVEMYKSYLVGEELWVL 120

Query: 682 YDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
            ++L  G L++ +   R   +  A   +   V + L +LH      + H D+K+ +I+  
Sbjct: 121 MEFLQGGALTDIVSQVRLNEEQIAT--VCEAVLQALAYLHAQ---GVIHRDIKSDSILLT 175

Query: 739 ENMEPHLAEFGF 750
            +    L++FGF
Sbjct: 176 LDGRVKLSDFGF 187

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 36/188 (19%)

Query: 633 ITVSVKKIEWGATRIKIVSEFIT--RI-GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           I V+VK  +   T +    +F++   I   + H ++++L+G        +++ +  P G 
Sbjct: 41  INVAVKTCKKDCT-LDNKEKFMSEAVIMKNLDHPHIVKLIGII-EEEPTWIIMELYPYGE 98

Query: 690 LSEKIRTKRDWAAKYKIV---LGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           L   +   ++      +V   L + + + +L       + H D+   NI+        L 
Sbjct: 99  LGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINC--V-HRDIAVRNILVASPECVKLG 155

Query: 747 EFGFKYLTQLADGS---------FPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEII 792
           +FG   L++  +            P  I W   ES     F  A       DV+ F   +
Sbjct: 156 DFG---LSRYIEDEDYYKASVTRLP--IKWMSPESINFRRFTTA------SDVWMFAVCM 204

Query: 793 LEILTNGR 800
            EIL+ G+
Sbjct: 205 WEILSFGK 212

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 40/267 (14%), Positives = 78/267 (29%), Gaps = 57/267 (21%)

Query: 631 TGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
            G   ++K+ +            + E        +H +++R            +  +Y  
Sbjct: 35  DGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCN 94

Query: 687 NGNLSEKIRTKRDWAAKY------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
            G+L++ I       + +       ++L V RGL ++H     ++ H D+K SNI     
Sbjct: 95  GGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRT 151

Query: 741 MEPHLAEFGFKYLTQLADGSFPAKIA-WTESGEFYNAMKEE---MYM------------- 783
             P+ A          A      KI          +   EE    ++             
Sbjct: 152 SIPNAASEE-GDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLP 210

Query: 784 --DVYGFGEIILEILTNGRLTNAGSSLQN------KPIDGLLGEMYNENEVGSSSSLQDE 835
             D++     ++       L   G             I  +L           S    + 
Sbjct: 211 KADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVL-----------SQEFTEL 259

Query: 836 IKLVLDVALLCTRSTPSDRPSMEEALK 862
           +K+++          P  RPS    +K
Sbjct: 260 LKVMIHPD-------PERRPSAMALVK 279

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 38/204 (18%), Positives = 77/204 (37%), Gaps = 51/204 (25%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
             V++K ++  A    R +   E       ++H N++ LLG         +++ Y  +G+
Sbjct: 40  QAVAIKTLKDKAEGPLREEFRHE-AMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGD 98

Query: 690 LSEKIRTKRDWAAKY------------------KIVLGVARGLCFL--HHDCYPAIPHGD 729
           L E +  +   +                      +V  +A G+ +L  HH     + H D
Sbjct: 99  LHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH-----VVHKD 153

Query: 730 LKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAM 777
           L   N++  + +   +++ G         Y   L +   P  I W   E+   G+F    
Sbjct: 154 LATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLP--IRWMAPEAIMYGKFSID- 210

Query: 778 KEEMYMDVYGFGEIIL-EILTNGR 800
                 D++ +G ++L E+ + G 
Sbjct: 211 -----SDIWSYG-VVLWEVFSYGL 228

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query: 629 LPTGITVSVK-----KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
             TG  V+VK     KI       KI  E I  +   RH ++I+L          +++ +
Sbjct: 33  QLTGHKVAVKILNRQKIRSLDVVGKIKRE-IQNLKLFRHPHIIKLYQVISTPTDFFMVME 91

Query: 684 YLPNGNLSEKI----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
           Y+  G L + I    R +   A +   +I+  V     + H      + H DLK  N++ 
Sbjct: 92  YVSGGELFDYICKHGRVEEMEARRLFQQILSAVD----YCHRHM---VVHRDLKPENVLL 144

Query: 738 DENMEPHLAEFGF 750
           D +M   +A+FG 
Sbjct: 145 DAHMNAKIADFGL 157

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 46/225 (20%), Positives = 76/225 (33%), Gaps = 40/225 (17%)

Query: 661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDW---AAKYKIVLGVARGLCFL 717
            H N+IR      +R   Y+  +      L E +  K           ++     GL  L
Sbjct: 76  EHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHL 134

Query: 718 HHDCYPAIPHGDLKASNIVFDE-----NMEPHLAEFGFKYLTQLADGSFPAKIAWTESG- 771
           H      I H DLK  NI+         ++  +++FG     +LA G           G 
Sbjct: 135 HSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLC--KKLAVGRHSFSRRSGVPGT 189

Query: 772 EFYNA---MKEEMYM------DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEM-- 820
           E + A   + E+         D++  G +   +++ G      S  +   I  LLG    
Sbjct: 190 EGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANI--LLGACSL 247

Query: 821 -YNENEVGSSSSLQDEIK--LVLDVALLCTRSTPSDRPSMEEALK 862
                E       ++ I+  + +D         P  RPS +  LK
Sbjct: 248 DCLHPEKHEDVIARELIEKMIAMD---------PQKRPSAKHVLK 283

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 77/248 (31%)

Query: 661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKY---------------- 704
           +H+++++  G C +     ++++Y+ +G+L++ +R     A                   
Sbjct: 75  QHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ 134

Query: 705 --KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQ 755
              I   +A G+ +L    +  + H DL   N +   N+   + +FG         Y   
Sbjct: 135 MLHIASQIASGMVYLASQHF--V-HRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRV 191

Query: 756 LADGSFPAKIAWT--ES---GEFYNAMKEEMYMDVYGFGEIIL-EILTNGR-----LTNA 804
                 P  I W   ES    +F          DV+ FG +IL EI T G+     L+N 
Sbjct: 192 GGHTMLP--IRWMPPESIMYRKFTTE------SDVWSFG-VILWEIFTYGKQPWFQLSNT 242

Query: 805 --------GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPS 856
                   G  L+ +P      E+Y+                   V L C +  P  R +
Sbjct: 243 EVIECITQGRVLE-RP-RVCPKEVYD-------------------VMLGCWQREPQQRLN 281

Query: 857 MEEALKLL 864
           ++E  K+L
Sbjct: 282 IKEIYKIL 289

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 58/356 (16%), Positives = 109/356 (30%), Gaps = 76/356 (21%)

Query: 40  NLTSLISLDISRNNFSGHFPGGIQSL--------RNLLVLDAFSNSFSGSVPAEISQL-- 89
               + SLD+S NN           L         ++  L+   NS       E+ Q+  
Sbjct: 20  IPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 90  ---EHLKVLNLAGSYFSGPIPSQFGSF-----KSLEFLHLAGNLLNDQIPAELG-MLK-- 138
               ++  LNL+G++ S     +          ++  L L  N  + +  +E        
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 139 --TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
             ++T + +  N         LG          +   L   +    +    + SL L  N
Sbjct: 137 PASITSLNLRGN--------DLG--------IKSSDELIQIL---AAIPANVNSLNLRGN 177

Query: 197 QLAGQVPWEFSRV-----TTLKSLDLSDNRLS----GPIPESFADLKN-LRLLSLMYNEM 246
            LA +   E ++       ++ SLDLS N L       +   F+ + N +  L+L  N +
Sbjct: 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

Query: 247 SGT----VPESLVQLPSLEILFIWNNYFSG-------SLPENLGRNSKLRWVDVSTNNFN 295
            G     +      L  L+ +++  +           +L        K+  VD +    +
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

Query: 296 GSIPPDICS-----GGVLFKLILFSNNFT-----GSLSPSLSNCSSLVRLRLEDNS 341
            S    I +      G      L +          +    L+    L         
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 48/335 (14%), Positives = 103/335 (30%), Gaps = 92/335 (27%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADL-----KNLRLLSLMYNEMSGTVPESLVQLPSLEILF 264
             + SLDLS N L                 ++  L+L  N +     ++  +L       
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDEL------- 71

Query: 265 IWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG-----GVLFKLILFSNNFT 319
                    L       + +  +++S N  +     ++          +  L L  N+F+
Sbjct: 72  ------VQILAAI---PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 320 GS----LSPSLSNC-SSLVRLRLEDNSFSGEIPLKFSQ-LPDIN----YIDLSRNGFT-- 367
                    + SN  +S+  L L  N    +   +  Q L  I      ++L  N     
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 368 GGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKS 427
                                 +L   + +   S+ SL        +++ NL   KS   
Sbjct: 183 NCA-------------------ELAKFLASIPASVTSL--------DLSANLLGLKSYAE 215

Query: 428 ISVIESHMNNLSGTIPESVSNCVELERIDLANNKL----IGSIPEVLARLPVLGVLDLSH 483
           ++ I S + N              +  ++L  N L    + ++  +   L  L  + L +
Sbjct: 216 LAYIFSSIPNH-------------VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 484 NSLSGQIPAK-------FGSCSSLTVLNVSFNDIS 511
           + +      +       F +   + +++ +  +I 
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 59/323 (18%), Positives = 99/323 (30%), Gaps = 71/323 (21%)

Query: 20  LVDLNLSHNSFSGQFPVEIF-----NLTSLISLDISRNNFSGHFPGGIQSL--------R 66
           +  LNLS NS   +   E+         ++ SL++S N  S         L         
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS---YKSSDELVKTLAAIPF 109

Query: 67  NLLVLDAFSNSFSGSVPAEISQL-----EHLKVLNLAGSYFSGPIPSQFGSF-----KSL 116
            + VLD   N FS    +E  Q        +  LNL G+        +          ++
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 117 EFLHLAGNLLNDQIPAELG-MLK----TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAG 171
             L+L GN L  +  AEL   L     +VT +++  N         LG            
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN--------LLGL---------KS 212

Query: 172 ANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV----TTLKSLDLSDNRLSGPIP 227
                 I    S    + SL L  N L G        +      L+++ L  + +     
Sbjct: 213 YAELAYIFS--SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270

Query: 228 ESFADL-------KNLRLLSLMYNEMSGTVPESLVQL-----PSLEILFIWNNYFS---- 271
           E    L       + + L+     E+  +    +  L        ++  + N        
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQK 330

Query: 272 -GSLPENLGRNSKLRWVDVSTNN 293
             +  E+L    +LR    +   
Sbjct: 331 HQTNIEDLNIPDELRESIQTCKP 353

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 51/280 (18%), Positives = 100/280 (35%), Gaps = 79/280 (28%)

Query: 633 ITVSVKKIEWGATRIKI--VSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
           + V+VK ++  +   +     E    +  ++H++++R  G C       ++++Y+ +G+L
Sbjct: 72  MLVAVKALKEASESARQDFQREAEL-LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 130

Query: 691 SEKIRTKRDWAAKY-----------------KIVLGVARGLCFLHHDCYPAIPHGDLKAS 733
           +  +R+    A                     +   VA G+ +L    +  + H DL   
Sbjct: 131 NRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHF--V-HRDLATR 187

Query: 734 NIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ES---GEFYNAMKEEM 781
           N +  + +   + +FG         Y         P +  W   ES    +F        
Sbjct: 188 NCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIR--WMPPESILYRKFTTE----- 240

Query: 782 YMDVYGFGEIIL-EILTNGR-----LTN--------AGSSLQNKPIDGLLGEMYNENEVG 827
             DV+ FG ++L EI T G+     L+N         G  L+ +P      E+Y      
Sbjct: 241 -SDVWSFG-VVLWEIFTYGKQPWYQLSNTEAIDCITQGRELE-RP-RACPPEVYA----- 291

Query: 828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                     ++      C +  P  R S+++    L  L
Sbjct: 292 ----------IMRG----CWQREPQQRHSIKDVHARLQAL 317

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 178 IPKELSNLTKLESLFLFRNQ---LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLK 234
           +   LS L   + L L  N    ++       S +  L+ L L  N +   I    A   
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIKK-IENLDAVAD 93

Query: 235 NLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPE--NLGRNSKLRWVDVSTN 292
            L  L + YN+++      + +L +L +L++ NN  + +  E   L    KL  + ++ N
Sbjct: 94  TLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 22/122 (18%)

Query: 414 NITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARL 473
            +   L   K+CK +++     NN+   I  S+S    L  + L  N  I  I  + A  
Sbjct: 39  KMDATLSTLKACKHLAL---STNNIE-KI-SSLSGMENLRILSLGRNL-IKKIENLDAVA 92

Query: 474 PVLGVLDLSHN---SLSGQIPAKFGSCSSLTVLNVSFNDIS--------GSIPSGKVLRL 522
             L  L +S+N   SLSG          +L VL +S N I+         ++   + L L
Sbjct: 93  DTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

Query: 523 MG 524
            G
Sbjct: 148 AG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 228 ESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWV 287
               + + + L   M   +   +  +L  L + + L +  N     +  +L     LR +
Sbjct: 20  VVATEAEKVEL-HGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRIL 75

Query: 288 DVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFS--GE 345
            +  N     I         L +L +  N    SLS  +    +L  L + +N  +  GE
Sbjct: 76  SLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGE 132

Query: 346 IPLKFSQLPDINYIDLSRN 364
           I  K + L  +  + L+ N
Sbjct: 133 I-DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 63/208 (30%)

Query: 19  ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF 78
           E V+L+             +  L +   L +S NN        I+ + +L          
Sbjct: 26  EKVELHGMIPPIEK-MDATLSTLKACKHLALSTNN--------IEKISSL---------- 66

Query: 79  SGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK 138
                   S +E+L++L+L  +     I +      +LE L ++ N +     + +  L 
Sbjct: 67  --------SGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS--LSGIEKLV 115

Query: 139 TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL 198
            +  + +  N        ++ N  E+  L               + L KLE L L  N L
Sbjct: 116 NLRVLYMSNN--------KITNWGEIDKL---------------AALDKLEDLLLAGNPL 152

Query: 199 AGQVPWE----------FSRVTTLKSLD 216
                              R+  LK LD
Sbjct: 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 20/128 (15%)

Query: 631 TGITVSVKKIEWGATR---IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           TG   +VKK+     R   +   +             ++ L G         +  + L  
Sbjct: 82  TGFQCAVKKVRLEVFRVEELVACAGL-------SSPRIVPLYGAVREGPWVNIFMELLEG 134

Query: 688 GNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-ME 742
           G+L + I+       D A  Y  +     GL +LH      I HGD+KA N++   +   
Sbjct: 135 GSLGQLIKQMGCLPEDRALYY--LGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSR 189

Query: 743 PHLAEFGF 750
             L +FG 
Sbjct: 190 AALCDFGH 197

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 61/292 (20%), Positives = 103/292 (35%), Gaps = 93/292 (31%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
            TV+VK ++  A+      ++SE    +  V H ++I+L G C       L+ +Y   G+
Sbjct: 54  TTVAVKMLKENASPSELRDLLSE-FNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGS 112

Query: 690 LSEKIRTKRDWAAKYKIVLG--------------------------VARGLCFL--HHDC 721
           L   +R  R     Y    G                          +++G+ +L      
Sbjct: 113 LRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK-- 170

Query: 722 YPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGE 772
              + H DL A NI+  E  +  +++FG            + + G  P K  W   ES  
Sbjct: 171 ---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVK--WMAIES-- 223

Query: 773 FYNAMKEEMYM---DVYGFGEIIL-EILTNGR-----LTNA--------GSSLQNKPIDG 815
               + + +Y    DV+ FG ++L EI+T G      +           G  ++ +P D 
Sbjct: 224 ----LFDHIYTTQSDVWSFG-VLLWEIVTLGGNPYPGIPPERLFNLLKTGHRME-RP-DN 276

Query: 816 LLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
              EMY                    + L C +  P  RP   +  K L  +
Sbjct: 277 CSEEMY-------------------RLMLQCWKQEPDKRPVFADISKDLEKM 309

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 58/280 (20%), Positives = 93/280 (33%), Gaps = 68/280 (24%)

Query: 626 KAV-LPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY 682
            A   P    V++K+I  E   T +  + + I  +    H N++        + + +L+ 
Sbjct: 33  AAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92

Query: 683 DYLPNGNLSEKIRTKRDWAAKYKIVLG----------VARGLCFLHHDCYPAIPHGDLKA 732
             L  G++ + I+           VL           V  GL +LH +      H D+KA
Sbjct: 93  KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKA 149

Query: 733 SNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA----------W-----TESGEFYNAM 777
            NI+  E+    +A+FG      LA G    +            W      E    Y+  
Sbjct: 150 GNILLGEDGSVQIADFGVS--AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFK 207

Query: 778 KEEMYMDVYGFGEIILEILTNGR---------------LTNAGSSLQNKPIDGLLGEMYN 822
                 D++ FG   +E L  G                L N   SL+    D  + + Y 
Sbjct: 208 A-----DIWSFGITAIE-LATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKY- 260

Query: 823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
                   S +  I L L          P  RP+  E L+
Sbjct: 261 ------GKSFRKMISLCLQK-------DPEKRPTAAELLR 287

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 48.5 bits (115), Expect = 7e-06
 Identities = 38/251 (15%), Positives = 68/251 (27%), Gaps = 54/251 (21%)

Query: 641 EWGATRIKIVSEFITRIGTVRHKNLIRL--LGFCYNRH--QAYLLYDYLPNGNLSEKIRT 696
                + K+   FI     V+     ++  +          +          NL      
Sbjct: 138 IKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEV 197

Query: 697 KRD---------WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
                         A+ ++ L V R L  LHH     + H  L+  +IV D+     L  
Sbjct: 198 LLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTG 254

Query: 748 FGFKYLTQLADGSFPAKIAWTESGEFYNA---MKEEMYM-------------DVYGFGEI 791
           F       + DG+     A +  G  +       E M               D +  G  
Sbjct: 255 FEHL----VRDGA----SAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306

Query: 792 ILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTP 851
           I  I     L N   +       G    ++   +      ++  ++  L           
Sbjct: 307 IYWIWC-ADLPNTDDAAL-----GGSEWIFRSCK-NIPQPVRALLEGFLRY-------PK 352

Query: 852 SDRPSMEEALK 862
            DR    +A++
Sbjct: 353 EDRLLPLQAME 363

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 20/142 (14%)

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTL 212
            IP      S    L++    L          LT+L  L L +NQ+       F ++T L
Sbjct: 25  GIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 213 KSLDLSDNRLSGPIPES-FADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNN-- 268
             L L +N+L   +P   F  L  L+ L+L  N++  +VP+ +  +L SL+ +++  N  
Sbjct: 79  TILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 136

Query: 269 --------YFSGSLPENLGRNS 282
                   Y S  L +N  +  
Sbjct: 137 DCSCPRIDYLSRWLNKNSQKEQ 158

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 67/268 (25%)

Query: 631 TGITVSVKKIEWGAT-----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
            G+ V++KK++         R   + E I  +  + H N+I+        ++  ++ +  
Sbjct: 56  DGVPVALKKVQIFDLMDAKARADCIKE-IDLLKQLNHPNVIKYYASFIEDNELNIVLELA 114

Query: 686 PNGNLSEKIRTKRDWAAKY------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
             G+LS  I+  +            K  + +   L  +H      + H D+K +N+    
Sbjct: 115 DAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITA 171

Query: 740 NMEPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM--------------D 784
                L + G  ++ +           A +  G  Y       YM              D
Sbjct: 172 TGVVKLGDLGLGRFFSSKTT------AAHSLVGTPY-------YMSPERIHENGYNFKSD 218

Query: 785 VYGFGEIILEILT-----NGRLTNAGSSLQNKPIDG----LLGEMYNENEVGSSSSLQDE 835
           ++  G ++ E+        G   N   SL  K        L  + Y       S  L+  
Sbjct: 219 IWSLGCLLYEMAALQSPFYGDKMNL-YSLCKKIEQCDYPPLPSDHY-------SEELRQL 270

Query: 836 IKLVLDVALLCTRSTPSDRPSMEEALKL 863
           + + ++         P  RP +     +
Sbjct: 271 VNMCINP-------DPEKRPDVTYVYDV 291

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 630 PTGITVSVKKIEW---GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           P+G  ++VK+I        + +++ +    + +     +++  G  +     ++  + + 
Sbjct: 45  PSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELM- 103

Query: 687 NGNLSEKIRTKRDWAAKY-------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           + +  +  +                KI L   + L  L  +    I H D+K SNI+ D 
Sbjct: 104 STSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDR 161

Query: 740 NMEPHLAEFG 749
           +    L +FG
Sbjct: 162 SGNIKLCDFG 171

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query: 629 LPTGITVSVK-----KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
             TG  V+VK     KI       KI  E I  +   RH ++I+L          +++ +
Sbjct: 38  ELTGHKVAVKILNRQKIRSLDVVGKIRRE-IQNLKLFRHPHIIKLYQVISTPSDIFMVME 96

Query: 684 YLPNGNLSEKI----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
           Y+  G L + I    R     + +   +I+ GV     + H      + H DLK  N++ 
Sbjct: 97  YVSGGELFDYICKNGRLDEKESRRLFQQILSGVD----YCHRHM---VVHRDLKPENVLL 149

Query: 738 DENMEPHLAEFGF 750
           D +M   +A+FG 
Sbjct: 150 DAHMNAKIADFGL 162

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 185 LTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN 244
           L  +  L L  N+L          +T L  L L+ N+L       F  L NL+ L L+ N
Sbjct: 62  LPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

Query: 245 EMSGTVPESLV-QLPSLEILFIWNNYFSGSLPENL-GRNSKLRWVDVSTNNFNGSIPPDI 302
           ++  ++P+ +  +L +L  L + +N    SLP+ +  + + L  +D+S N    S+P   
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPE-- 174

Query: 303 CSGGVLFKL 311
              GV  KL
Sbjct: 175 ---GVFDKL 180

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 42/229 (18%)

Query: 22  DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS 81
             NL   S +     +   L S+  +  + ++       GIQ L N+  L    N     
Sbjct: 23  KANLKKKSVT-DAVTQN-ELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGN----- 73

Query: 82  VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAEL-GMLKTV 140
                 +L  +                      +L +L L GN L   +P  +   L  +
Sbjct: 74  ------KLHDISA---------------LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL 111

Query: 141 THMEIGYNFYQ---GNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRN 196
             + +  N  Q     +  +L N+    YL++A   L  S+PK +   LT L  L L  N
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNL---TYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYN 244
           QL       F ++T LK L L  N+L   +P+  F  L +L+ + L  N
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 30/138 (21%)

Query: 629 LPTGITVSVK-----KIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL--- 680
             T   V++K      ++     +++  E I+ +  +RH ++I+L           +   
Sbjct: 31  YKTQQKVALKFISRQLLKKSDMHMRVERE-ISYLKLLRHPHIIKLYDVITTPTDIVMVIE 89

Query: 681 -----LYDYL-PNGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKA 732
                L+DY+     ++E          ++  +I+  +     + H      I H DLK 
Sbjct: 90  YAGGELFDYIVEKKRMTEDE------GRRFFQQIICAIE----YCHRHK---IVHRDLKP 136

Query: 733 SNIVFDENMEPHLAEFGF 750
            N++ D+N+   +A+FG 
Sbjct: 137 ENLLLDDNLNVKIADFGL 154

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 2e-05
 Identities = 24/199 (12%), Positives = 61/199 (30%), Gaps = 25/199 (12%)

Query: 44  LISLDISRNNFSGHFPGGIQS-LRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYF 102
              +D      S      +   L  + +L+      + ++        +LK L +     
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205

Query: 103 SGPIPSQFGS--FKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGN 160
              +          +LE L L   + +     ++ + + +               +    
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL---------------FSKDR 250

Query: 161 MSEVQYLDIAGANLSGSIPKELSN---LTKLESLFLFRNQL----AGQVPWEFSRVTTLK 213
              +++L I  A     + +       L +LE++ +    L    A  +     ++  LK
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 214 SLDLSDNRLSGPIPESFAD 232
            +++  N LS  + +    
Sbjct: 311 FINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 9e-05
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 445 SVSNCVELERIDLANNKLIGSIPEVLARLPVLG---VLDLSHNSLSG----QIPAKFGSC 497
           S      L+ + + + +    + E+     +L     +D+S   L+      +       
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 498 SSLTVLNVSFNDIS 511
             L  +N+ +N +S
Sbjct: 307 KHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 23/177 (12%), Positives = 63/177 (35%), Gaps = 24/177 (13%)

Query: 89  LEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM--LKTVTHMEIG 146
           L+ + +LN      +  +        +L+ L +    L D +  ++    L  +  + + 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL- 226

Query: 147 YNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP--- 203
                  +     +      +++     S            L+ L +   +    V    
Sbjct: 227 ----YVGVEDYGFDGD----MNVFRPLFSKD------RFPNLKWLGIVDAEEQNVVVEMF 272

Query: 204 WEFSRVTTLKSLDLSDNRLSG----PIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
            E   +  L+++D+S   L+      + +    +K+L+ +++ YN +S  + + L +
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 21/163 (12%)

Query: 150 YQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEF--S 207
            Q ++   L  M  +  L I G N   ++         L+SL +    L   V  +   S
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216

Query: 208 RVTTLKSLDL---SDNRLSGPIPESFADL------KNLRLLSLMYNEMSGTVPESLVQ-- 256
            +  L+ L L    ++         F  L       NL+ L ++  E    V E  ++  
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276

Query: 257 -LPSLEILFIWNNYFSGS----LPENLGRNSKLRWVDVSTNNF 294
            LP LE + I     +      L +++ +   L+++++  N  
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 18/132 (13%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITR-IGTVR---HKNLIRLLGFCYNRHQAYLLYDYLP 686
           TG   +VK I     + K   E + R +  ++   H N+++L  F  ++   YL+ +   
Sbjct: 50  TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYT 109

Query: 687 NGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---D 738
            G L ++I ++      D AA  +I+  V  G+ ++H +    I H DLK  N++     
Sbjct: 110 GGELFDEIISRKRFSEVD-AA--RIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKS 163

Query: 739 ENMEPHLAEFGF 750
           ++    + +FG 
Sbjct: 164 KDANIRIIDFGL 175

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTL 212
            IP      ++  YLD+   +L          LT L  L+L  N+L       F+++T+L
Sbjct: 25  GIP------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 213 KSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNN 268
             L+LS N+L       F  L  L+ L+L  N++  ++P+ +  +L  L+ L ++ N
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 17/104 (16%)

Query: 661 RHKNLIRLLGFCYNRHQ-------AYLLYDYLPNGNLSEKIRTKRDWAAKY-------KI 706
            H N+++         +        +LL   L  G L E ++     +          KI
Sbjct: 84  GHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKME--SRGPLSCDTVLKI 141

Query: 707 VLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF 750
                R +  +H    P I H DLK  N++        L +FG 
Sbjct: 142 FYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGS 184

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 630 PTGITVSVKKIEW---GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           P+G+ ++ K I      A R +I+ E +  +       ++   G  Y+  +  +  +++ 
Sbjct: 56  PSGLVMARKLIHLEIKPAIRNQIIRE-LQVLHECNSPYIVGFYGAFYSDGEISICMEHMD 114

Query: 687 NGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
            G+L + ++       +   K+ + V +GL +L       I H D+K SNI+ +   E  
Sbjct: 115 GGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIK 172

Query: 745 LAEFG 749
           L +FG
Sbjct: 173 LCDFG 177

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCF 716
           H N+I+L     ++   YL+ ++   G L E+I  +      D AA   I+  +  G+C+
Sbjct: 105 HPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECD-AA--NIMKQILSGICY 161

Query: 717 LHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGF 750
           LH      I H D+K  NI+    +  +   + +FG 
Sbjct: 162 LHKH---NIVHRDIKPENILLENKNSLLNIKIVDFGL 195

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 630 PTGITVSVKKIEW---GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
            TG  ++VK++          +I+ +    + +     +++  G        ++  + + 
Sbjct: 48  KTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMG 107

Query: 687 NGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
                 K R +         K  + + + + L +L       + H D+K SNI+ DE  +
Sbjct: 108 TCAEKLKKRMQGPIPERILGK--MTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQ 163

Query: 743 PHLAEFG 749
             L +FG
Sbjct: 164 IKLCDFG 170

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 625 CKAV-LPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL 681
            KA    TG   + K I  +        + E I  + T  H  +++LLG  Y+  + +++
Sbjct: 36  YKAKNKETGALAAAKVIETKSEEELEDYIVE-IEILATCDHPYIVKLLGAYYHDGKLWIM 94

Query: 682 YDYLPNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
            ++ P G +   +                +   +   L FLH      I H DLKA N++
Sbjct: 95  IEFCPGGAVDAIMLELDRGLTEPQIQV--VCRQMLEALNFLHSK---RIIHRDLKAGNVL 149

Query: 737 FDENMEPHLAEFGF 750
                +  LA+FG 
Sbjct: 150 MTLEGDIRLADFGV 163

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 22/137 (16%)

Query: 626 KAVLPTGITVSVKKIEWGATRIKIVSEFITRIG---TVRHKNL--IRLLGFCYNRHQAYL 680
           + +       ++K +       + +  +   I     ++  +   IRL  +       Y+
Sbjct: 46  QVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105

Query: 681 LYDYLPNGNLSEKIRTKR----DWAAKY--KIVLGVARGLCFLH-HDCYPAIPHGDLKAS 733
           + +   N +L+  ++ K+         Y   ++  V      +H H     I H DLK +
Sbjct: 106 VMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVH----TIHQHG----IVHSDLKPA 156

Query: 734 NIVFDENMEPHLAEFGF 750
           N +  + M   L +FG 
Sbjct: 157 NFLIVDGM-LKLIDFGI 172

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 45/216 (20%)

Query: 672 CYNRHQAYLLYDYLPNGNLSEKIR-----TKRDWAAKYKIVLGVARGLCFLHHDCYPAIP 726
              +   Y+        NL + +        R+      I + +A  + FLH      + 
Sbjct: 130 SSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKG---LM 186

Query: 727 HGDLKASNIVFDENMEPHLAEFGFKYLTQLA-DGSFPAKIAWTESGEFYNAMKEE----- 780
           H DLK SNI F  +    + +FG      L        +     +     A         
Sbjct: 187 HRDLKPSNIFFTMDDVVKVGDFG------LVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240

Query: 781 MYM--------------DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV 826
           +YM              D++  G I+ E+L      +         I  +    +     
Sbjct: 241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLY---SFSTQMERVRI-ITDVRNLKFPLLFT 296

Query: 827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
                    ++            +P++RP   + ++
Sbjct: 297 QKYPQEHMMVQ-------DMLSPSPTERPEATDIIE 325

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 23/209 (11%), Positives = 60/209 (28%), Gaps = 33/209 (15%)

Query: 656 RIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLC 715
           R+  +    + R+L   + R    ++ +++  G+L E   T        + +  +A    
Sbjct: 84  RLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAAD 143

Query: 716 FLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYN 775
             H      +       S +    + +  LA         + D +               
Sbjct: 144 AAHRA---GVALSIDHPSRVRVSIDGDVVLAYPAT-----MPDANPQD------------ 183

Query: 776 AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE 835
                   D+ G G  +  +L   R     + +++  +     +     +    + +  +
Sbjct: 184 --------DIRGIGASLYALLV-NRWPLPEAGVRS-GLAPAERDT--AGQPIEPADIDRD 231

Query: 836 IKLVLD-VALLCTRSTPSDRPSMEEALKL 863
           I   +  VA    +     R +      +
Sbjct: 232 IPFQISAVAARSVQGDGGIRSASTLLNLM 260

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 47/250 (18%), Positives = 77/250 (30%), Gaps = 44/250 (17%)

Query: 631 TGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
            G   +VK+          R + ++E  +     +H   +RL          YL  +   
Sbjct: 81  DGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC- 139

Query: 687 NGNLSEKIRTKRDW---AAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
             +L +           A  +  +      L  LH      + H D+K +NI        
Sbjct: 140 GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRC 196

Query: 744 HLAEFGFKYLTQLADGSFPAKIAWTESGE-FYNAMKEEMYMDVYGF-------GEIILEI 795
            L +FG   L +L            + G+  Y  M  E+    YG        G  ILE+
Sbjct: 197 KLGDFGL--LVELGTAGA----GEVQEGDPRY--MAPELLQGSYGTAADVFSLGLTILEV 248

Query: 796 LTNGRLTNAGSSLQ---NKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPS 852
             N  L + G   Q      +               SS L+  + ++L+         P 
Sbjct: 249 ACNMELPHGGEGWQQLRQGYLPPEFTAGL-------SSELRSVLVMMLEPD-------PK 294

Query: 853 DRPSMEEALK 862
            R + E  L 
Sbjct: 295 LRATAEALLA 304

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 21/135 (15%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVR----------HKNLIRLLGFCYNRHQAYL 680
           TG   +VK +E  A R+        R  T R          H ++I L+    +    +L
Sbjct: 118 TGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFL 177

Query: 681 LYDYLPNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
           ++D +  G L + +  K     ++      I+  +   + FLH +    I H DLK  NI
Sbjct: 178 VFDLMRKGELFDYLTEKVALSEKE-TRS--IMRSLLEAVSFLHAN---NIVHRDLKPENI 231

Query: 736 VFDENMEPHLAEFGF 750
           + D+NM+  L++FGF
Sbjct: 232 LLDDNMQIRLSDFGF 246

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 19/132 (14%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITR-IGT---VRHKNLIRLLGFCYNRHQAYLLYDY 684
             T   V+VK ++    R     E I + I     + H+N+++  G     +  YL  +Y
Sbjct: 29  RVTEEAVAVKIVD--MKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86

Query: 685 LPNGNLSEKI----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
              G L ++I          A ++  +++ GV     +LH      I H D+K  N++ D
Sbjct: 87  CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVV----YLHGI---GITHRDIKPENLLLD 139

Query: 739 ENMEPHLAEFGF 750
           E     +++FG 
Sbjct: 140 ERDNLKISDFGL 151

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 687
           T +  ++K I   +      S+ +  +  ++   H N+++L  F  ++   YL+ +    
Sbjct: 61  THVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKG 120

Query: 688 GNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DE 739
           G L ++I  +      D AA   I+  V  G+ +LH      I H DLK  N++    ++
Sbjct: 121 GELFDEIIHRMKFNEVD-AA--VIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEK 174

Query: 740 NMEPHLAEFGF 750
           +    + +FG 
Sbjct: 175 DALIKIVDFGL 185

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 12/127 (9%)

Query: 177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNL 236
           S+P  +      + L+L  NQ+    P  F  +  LK L L  N+L       F  L  L
Sbjct: 33  SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 237 RLLSLMYNEMSGTVPE----SLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTN 292
            +L L  N+++  +P      LV    L+ LF+  N  +  LP  + R + L  + +  N
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145

Query: 293 NFNGSIP 299
               SIP
Sbjct: 146 QLK-SIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV-QLPSLEILFIWNN 268
           T  + L L DN+++   P  F  L NL+ L L  N++   +P  +   L  L +L +  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 269 YFSGSLPENL-GRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLS 327
             +  LP  +  R   L+ + +  N     +P  I     L  L L  N        +  
Sbjct: 99  QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 328 NCSSLVRLRLEDN 340
             SSL    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 29/165 (17%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
           SVPA I    + ++L L  +  +   P  F S  +L+ L+L  N L              
Sbjct: 33  SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-------------- 76

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLA 199
             + +G       +   L  +     LD+    L+  +P  +   L  L+ LF+  N+L 
Sbjct: 77  GALPVG-------VFDSLTQL---TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT 125

Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN 244
             +P    R+T L  L L  N+L      +F  L +L    L  N
Sbjct: 126 E-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 22/137 (16%)

Query: 626 KAVLPTGITVSVKKIEWGATRIKIVSEFITRIG---TVRHKNL--IRLLGFCYNRHQAYL 680
           + +       ++K +       + +  +   I     ++  +   IRL  +       Y+
Sbjct: 27  QVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86

Query: 681 LYDYLPNGNLSEKIRTKR----DWAAKY--KIVLGVARGLCFLH-HDCYPAIPHGDLKAS 733
           + +   N +L+  ++ K+         Y   ++  V      +H H     I H DLK +
Sbjct: 87  VMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVH----TIHQHG----IVHSDLKPA 137

Query: 734 NIVFDENMEPHLAEFGF 750
           N +  + M   L +FG 
Sbjct: 138 NFLIVDGM-LKLIDFGI 153

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 44/271 (16%), Positives = 82/271 (30%), Gaps = 58/271 (21%)

Query: 626 KAVLPTGITVSVKKIEWGATRIKIVSEFITRIG---TVRHKNL--IRLLGFCYNRHQAYL 680
           + +       ++K +       + +  +   I     ++  +   IRL  +       Y+
Sbjct: 74  QVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 133

Query: 681 LYDYLPNGNLSEKIRTKR----DWAAKY--KIVLGVARGLCFLH-HDCYPAIPHGDLKAS 733
           + +   N +L+  ++ K+         Y   ++  V      +H H     I H DLK +
Sbjct: 134 VMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVH----TIHQHG----IVHSDLKPA 184

Query: 734 NIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWT----------ESGEFYNAMKEEMY 782
           N +  + M   L +FG    +                         +        K +  
Sbjct: 185 NFLIVDGM-LKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSK 243

Query: 783 M----DVYGFGEIILEILTNGRL-----TNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ 833
           +    DV+  G I+  +   G+       N  S L          E  +         LQ
Sbjct: 244 ISPKSDVWSLGCILYYMTY-GKTPFQQIINQISKLHAIIDPNHEIEFPD----IPEKDLQ 298

Query: 834 DEIK--LVLDVALLCTRSTPSDRPSMEEALK 862
           D +K  L  D         P  R S+ E L 
Sbjct: 299 DVLKCCLKRD---------PKQRISIPELLA 320

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 37/144 (25%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRIG-------TVRHKNLIRLLGFCYN--RHQAY 679
             T    +VK ++    +++ +      +         +RHKN+I+L+   YN  + + Y
Sbjct: 27  SETLCRRAVKILK--KKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY 84

Query: 680 L-----------LYDYLPNGNLSEKIRTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIP 726
           +           + D +P              A  Y  +++ G+     +LH      I 
Sbjct: 85  MVMEYCVCGMQEMLDSVPEKRFPVCQ------AHGYFCQLIDGLE----YLHSQG---IV 131

Query: 727 HGDLKASNIVFDENMEPHLAEFGF 750
           H D+K  N++        ++  G 
Sbjct: 132 HKDIKPGNLLLTTGGTLKISALGV 155

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 32/148 (21%)

Query: 631 TGITVSVKKIE---WGATRIKIVSEF-ITRIGTVRHKNLIRLL------GFCYNRHQAYL 680
           TG  V++K+         R +   E  I +   + H N++                   L
Sbjct: 38  TGEQVAIKQCRQELSPKNRERWCLEIQIMK--KLNHPNVVSAREVPDGLQKLAPNDLPLL 95

Query: 681 LYDYLPNGNLSEKIRTKR-------DWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLK 731
             +Y   G+L + +                    I   +     +LH +    I H DLK
Sbjct: 96  AMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALR----YLHENR---IIHRDLK 148

Query: 732 ASNIVFDENMEPH---LAEFGF-KYLTQ 755
             NIV     +     + + G+ K L Q
Sbjct: 149 PENIVLQPGPQRLIHKIIDLGYAKELDQ 176

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 19/132 (14%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITR-IGT---VRHKNLIRLLGFCYNRHQAYLLYDY 684
             T   V+VK ++    R     E I + I     + H+N+++  G     +  YL  +Y
Sbjct: 29  RVTEEAVAVKIVD--MKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86

Query: 685 LPNGNLSEKI----RTKRDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
              G L ++I          A ++  +++ GV     +LH      I H D+K  N++ D
Sbjct: 87  CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVV----YLHGI---GITHRDIKPENLLLD 139

Query: 739 ENMEPHLAEFGF 750
           E     +++FG 
Sbjct: 140 ERDNLKISDFGL 151

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 22/136 (16%)

Query: 631 TGITVSVKKIE------WGATRIKIVSEFITR-IGTVR----HKNLIRLLGFCYNRHQAY 679
           T    +VK I+      + A  ++ + E   + +  +R    H N+I+L          +
Sbjct: 41  TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFFF 100

Query: 680 LLYDYLPNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 734
           L++D +  G L + +  K     ++     + +L V   +C LH      I H DLK  N
Sbjct: 101 LVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV---ICALHKL---NIVHRDLKPEN 154

Query: 735 IVFDENMEPHLAEFGF 750
           I+ D++M   L +FGF
Sbjct: 155 ILLDDDMNIKLTDFGF 170

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 22/111 (19%)

Query: 660 VRHKNLIRLLGFCY------NRHQAYLLYDYLPNGNLSEKIRTKR---DWAAKY--KIVL 708
           + H N+++L           N    Y++++ +  G + E    K    D A  Y   ++ 
Sbjct: 93  LDHPNVVKL----VEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIK 148

Query: 709 GVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG 759
           G+     +LH   Y  I H D+K SN++  E+    +A+FG     + +D 
Sbjct: 149 GIE----YLH---YQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDA 192

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 24/133 (18%)

Query: 631 TGITVSVKKI------EW---GATR-IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL 680
           TG  V++KK             A R I+++ +        +H NL+ LL     + + +L
Sbjct: 27  TGQIVAIKKFLESEDDPVIKKIALREIRMLKQL-------KHPNLVNLLEVFRRKRRLHL 79

Query: 681 LYDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
           +++Y  +  +  ++   +          I     + + F H        H D+K  NI+ 
Sbjct: 80  VFEYCDH-TVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILI 135

Query: 738 DENMEPHLAEFGF 750
            ++    L +FGF
Sbjct: 136 TKHSVIKLCDFGF 148

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 19/130 (14%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
           T +  +VK I+      +  +E I  +    +H N+I L     +    Y++ + +  G 
Sbjct: 46  TNMEFAVKIID---KSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGE 102

Query: 690 LSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENM 741
           L +KI  +     R+ A+   ++  + + + +LH      + H DLK SNI++     N 
Sbjct: 103 LLDKILRQKFFSERE-AS--AVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNP 156

Query: 742 EP-HLAEFGF 750
           E   + +FGF
Sbjct: 157 ESIRICDFGF 166

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 18/133 (13%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           +G+   +K I     R ++  E I      + ++ H N+I++     + H  Y++ +   
Sbjct: 46  SGLERVIKTIN--KDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCE 103

Query: 687 NGNLSEKIRTKRDWAAKY------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--- 737
            G L E+I + +            +++  +   L + H      + H DLK  NI+F   
Sbjct: 104 GGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDT 160

Query: 738 DENMEPHLAEFGF 750
             +    + +FG 
Sbjct: 161 SPHSPIKIIDFGL 173

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 24/133 (18%)

Query: 631 TGITVSVKKI------EWG---ATR-IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL 680
           TG  V++KK       +     A R IK++ +        RH+NL+ LL  C  + + YL
Sbjct: 49  TGRIVAIKKFLESDDDKMVKKIAMREIKLLKQL-------RHENLVNLLEVCKKKKRWYL 101

Query: 681 LYDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF 737
           +++++ +  + + +       D+    K +  +  G+ F H      I H D+K  NI+ 
Sbjct: 102 VFEFVDH-TILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILV 157

Query: 738 DENMEPHLAEFGF 750
            ++    L +FGF
Sbjct: 158 SQSGVVKLCDFGF 170

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 673 YNRHQAYLLYDYLPNGNLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLK 731
           +   Q +++ ++   G   E++RTK    A    I+  +   L            H DL 
Sbjct: 132 FKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEA--SLRFEHRDLH 189

Query: 732 ASNIVFDENMEPHLAEFG 749
             N++  +     L    
Sbjct: 190 WGNVLLKKTSLKKLHYTL 207

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 21/133 (15%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIG---TVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           T    +VK I   + + K  S  +  +     + H N+++L     +    Y++ +    
Sbjct: 46  TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTG 105

Query: 688 GNLSEKIRTK-----RDWAAKY--KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--- 737
           G L ++I  +      D AA+   ++  G+     ++H      I H DLK  NI+    
Sbjct: 106 GELFDEIIKRKRFSEHD-AARIIKQVFSGIT----YMHKH---NIVHRDLKPENILLESK 157

Query: 738 DENMEPHLAEFGF 750
           +++ +  + +FG 
Sbjct: 158 EKDCDIKIIDFGL 170

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 30/143 (20%)

Query: 625 CKAV-LPTGITVSVKKIEWGATRIK-----IVSEFITRIGTVRHKNLIRLLGFCYNRHQA 678
             A  +     V++KK+ +   +       I+ E +  +  +RH N I+  G     H A
Sbjct: 71  YFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKE-VRFLQKLRHPNTIQYRGCYLREHTA 129

Query: 679 YLLYDYL----------PNGNLSEK-IRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPH 727
           +L+ +Y               L E  I           +  G  +GL +LH      + H
Sbjct: 130 WLVMEYCLGSASDLLEVHKKPLQEVEIAA---------VTHGALQGLAYLHSH---NMIH 177

Query: 728 GDLKASNIVFDENMEPHLAEFGF 750
            D+KA NI+  E     L +FG 
Sbjct: 178 RDVKAGNILLSEPGLVKLGDFGS 200

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 28/142 (19%)

Query: 625 CKAV-LPTGITVSVKKI------EWGATR----IKIVSEFITRIGTVRHKNLIRLL---- 669
           C A        V++KK+      +  A R    + ++           HKN+I LL    
Sbjct: 79  CAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV-------NHKNIISLLNVFT 131

Query: 670 --GFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPH 727
                      YL+ + +   NL + I+ + D      ++  +  G+  LH      I H
Sbjct: 132 PQKTLEEFQDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIH 187

Query: 728 GDLKASNIVFDENMEPHLAEFG 749
            DLK SNIV   +    + +FG
Sbjct: 188 RDLKPSNIVVKSDCTLKILDFG 209

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 48/279 (17%), Positives = 87/279 (31%), Gaps = 68/279 (24%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITR-----IGTVRHKNLIRLLGFCYNRHQAYL----- 680
            G  V+VK++           +           +  H N+IR           Y+     
Sbjct: 38  QGRPVAVKRML------IDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91

Query: 681 ---LYDYL-PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
              L D +       E ++ ++++     ++  +A G+  LH      I H DLK  NI+
Sbjct: 92  NLNLQDLVESKNVSDENLKLQKEYNPI-SLLRQIASGVAHLHSLK---IIHRDLKPQNIL 147

Query: 737 FDENMEPH-------------LAEFGF-KYLTQLADGSFPAKIAWTESGEFY-------- 774
              +                 +++FG  K L      SF   +    SG           
Sbjct: 148 VSTSSRFTADQQTGAENLRILISDFGLCKKLDS-GQSSFRTNLN-NPSGTSGWRAPELLE 205

Query: 775 ---NAMKEEMY---MDVYGFGEIILEILTNGRLTNAGSSLQNKPI---DGLLGEMYNENE 825
              N   +      +D++  G +   IL+ G+        +   I      L EM   ++
Sbjct: 206 ESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHD 265

Query: 826 VGSSSSLQDEIK--LVLDVALLCTRSTPSDRPSMEEALK 862
               +   D I   +  D         P  RP+  + L+
Sbjct: 266 RSLIAEATDLISQMIDHD---------PLKRPTAMKVLR 295

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 59/292 (20%), Positives = 100/292 (34%), Gaps = 93/292 (31%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN 689
             V+VK ++  A+   +     E    +    + N+++LLG C       LL++Y+  G+
Sbjct: 78  TMVAVKMLKEEASADMQADFQRE-AALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGD 136

Query: 690 LSEKIRTKRDWAAKY--------------------------KIVLGVARGLCFL--HHDC 721
           L+E +R+                                   I   VA G+ +L      
Sbjct: 137 LNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK-- 194

Query: 722 YPAIPHGDLKASNIVFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWT--ESGE 772
                H DL   N +  ENM   +A+FG         Y     + + P +  W   ES  
Sbjct: 195 ---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIR--WMPPES-- 247

Query: 773 FYNAMKEEMYM---DVYGFGEIIL-EILTNGR-----LTN--------AGSSLQNKPIDG 815
               +    Y    DV+ +G ++L EI + G      + +         G+ L   P + 
Sbjct: 248 ----IFYNRYTTESDVWAYG-VVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILA-CP-EN 300

Query: 816 LLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
              E+YN               L+      C    P+DRPS     ++L  +
Sbjct: 301 CPLELYN---------------LMRL----CWSKLPADRPSFCSIHRILQRM 333

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 14/99 (14%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDW-----AAKY-KIVLGVARG 713
           +RH  L+ L     + ++  ++Y+++  G L EK+  + +      A +Y + V     G
Sbjct: 211 LRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCK---G 267

Query: 714 LCFLHHDCYPAIPHGDLKASNIVFDENMEPHL--AEFGF 750
           LC +H +      H DLK  NI+F       L   +FG 
Sbjct: 268 LCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGL 303

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPN 687
           T    +VK I   + + K  S  +  +  ++   H N+++L     +    Y++ +    
Sbjct: 46  TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTG 105

Query: 688 GNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DE 739
           G L ++I  +      D AA  +I+  V  G+ ++H      I H DLK  NI+    ++
Sbjct: 106 GELFDEIIKRKRFSEHD-AA--RIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEK 159

Query: 740 NMEPHLAEFGF 750
           + +  + +FG 
Sbjct: 160 DCDIKIIDFGL 170

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 34/150 (22%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVR------------HKNLIRLL--- 669
           C  V   GI V++K++    +  + V+         R            H N++ L    
Sbjct: 39  CAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIF 98

Query: 670 --GFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAK-------YKIVLGVARGLCFLHHD 720
                   H+ YL+ + +   +L++ I  +R   +        Y I+     GL  LH  
Sbjct: 99  VHFEEPAMHKLYLVTELMRT-DLAQVIHDQRIVISPQHIQYFMYHIL----LGLHVLH-- 151

Query: 721 CYPA-IPHGDLKASNIVFDENMEPHLAEFG 749
              A + H DL   NI+  +N +  + +F 
Sbjct: 152 --EAGVVHRDLHPGNILLADNNDITICDFN 179

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 19/153 (12%)

Query: 163 EVQYLDIAGANLSGSIPKELSNLTKLESLFLFR-NQLAGQVPWEFSRV----TTLKSLDL 217
            V   +    ++  ++ +  +N   LE + L     +        +      T +K   +
Sbjct: 13  PVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI 72

Query: 218 SDNRLSGPIPESFADL----KNLRLLSLMYNEMSGT----VPESLVQLPSLEILFIWNNY 269
              R + P+  + A++      L+ L++  N +SG+    + E+L    SL  L I N  
Sbjct: 73  VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS 132

Query: 270 FS------GSLPENLGRNSKLRWVDVSTNNFNG 296
                     +   L +N+ L            
Sbjct: 133 QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 626 KAV-LPTGITVSVKKIEWGATRIK-IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
           K   + TG   ++K ++      + I  E         H+N+    G  + +     + D
Sbjct: 42  KGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYG-AFIKKNPPGMDD 100

Query: 684 -------YLPNGNLSEKIRTKR------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL 730
                  +   G++++ I+  +      +W A   I   + RGL  LH      + H D+
Sbjct: 101 QLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAY--ICREILRGLSHLHQHK---VIHRDI 155

Query: 731 KASNIVFDENMEPHLAEFGF 750
           K  N++  EN E  L +FG 
Sbjct: 156 KGQNVLLTENAEVKLVDFGV 175

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 25/133 (18%)

Query: 631 TGITVSVKKIEWGATR----------IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL 680
           TG  V++KKI                I ++ E         H N+++LL   +  ++ YL
Sbjct: 27  TGEVVALKKIRLDTETEGVPSTAIREISLLKEL-------NHPNIVKLLDVIHTENKLYL 79

Query: 681 LYDYLPNGNLSEKIRTKRDWAAKYKIV----LGVARGLCFLHHDCYPAIPHGDLKASNIV 736
           ++++L   +L + +           ++      + +GL F H      + H DLK  N++
Sbjct: 80  VFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLL 135

Query: 737 FDENMEPHLAEFG 749
            +      LA+FG
Sbjct: 136 INTEGAIKLADFG 148

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 626 KAVLPTGITVSVKKIEWGATR----------IKIVSEFITRIGTVRHKNLIRLLGFCYNR 675
           KA    G T ++KKI                I I+ E        +H N+++L    + +
Sbjct: 20  KAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKEL-------KHSNIVKLYDVIHTK 72

Query: 676 HQAYLLYDYLPN--GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 733
            +  L++++L      L +      +       +L +  G+ + H      + H DLK  
Sbjct: 73  KRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQ 129

Query: 734 NIVFDENMEPHLAEFG 749
           N++ +   E  +A+FG
Sbjct: 130 NLLINREGELKIADFG 145

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 14/97 (14%)

Query: 662 HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCF 716
           H N+++L    +++   +L+ + L  G L E+I+ K      + A+   I+  +   +  
Sbjct: 65  HPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETE-AS--YIMRKLVSAVSH 121

Query: 717 LHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGF 750
           +H      + H DLK  N++F   ++N+E  + +FGF
Sbjct: 122 MHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGF 155

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 28/143 (19%)

Query: 624 GCKAV-LPTGITVSVKKI------EWGATR----IKIVSEFITRIGTVRHKNLIRLL--- 669
            C A        V++KK+      +  A R    + ++           HKN+I LL   
Sbjct: 41  VCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV-------NHKNIIGLLNVF 93

Query: 670 ---GFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIP 726
                       Y++ + +   NL + I+ + D      ++  +  G+  LH      I 
Sbjct: 94  TPQKSLEEFQDVYIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHS---AGII 149

Query: 727 HGDLKASNIVFDENMEPHLAEFG 749
           H DLK SNIV   +    + +FG
Sbjct: 150 HRDLKPSNIVVKSDCTLKILDFG 172

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 22/136 (16%)

Query: 626 KAVLPTGITVSVKKIEWGATR----------IKIVSEFITRIGTVRHKNLIRLLGFCYNR 675
           KA    G  V++K+I   A            I ++ E         H N++ L+   ++ 
Sbjct: 39  KAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKEL-------HHPNIVSLIDVIHSE 91

Query: 676 HQAYLLYDYLPN--GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 733
               L+++++      + ++ +T    +     +  + RG+   H      I H DLK  
Sbjct: 92  RCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQ 148

Query: 734 NIVFDENMEPHLAEFG 749
           N++ + +    LA+FG
Sbjct: 149 NLLINSDGALKLADFG 164

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 43/172 (25%)

Query: 625 CKAV-LPTGITVSVKKI----EWGATR----IKIVSEFITRIGTVRHKNLIRLL------ 669
             AV       V++KKI              IKI+           H N++++       
Sbjct: 28  FSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRL-------DHDNIVKVFEILGPS 80

Query: 670 --------GFCYNRHQAYLLYDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHH 719
                   G     +  Y++ +Y+   +L+  +      +  A+   +  + RGL ++H 
Sbjct: 81  GSQLTDDVGSLTELNSVYIVQEYMET-DLANVLEQGPLLEEHARL-FMYQLLRGLKYIH- 137

Query: 720 DCYPA-IPHGDLKASNIVFD-ENMEPHLAEFGFKYLTQLADGSFPAKIAWTE 769
               A + H DLK +N+  + E++   + +FG   L ++ D  +  K   +E
Sbjct: 138 ---SANVLHRDLKPANLFINTEDLVLKIGDFG---LARIMDPHYSHKGHLSE 183

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 630 PTGITVSVKKIEW---GATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           P+G  ++VK+I        + +++ +    + TV     +   G  +     ++  + + 
Sbjct: 30  PSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELM- 88

Query: 687 NGNLSEKIRTKRDWAAKY------KIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           + +L +  +   D           KI + + + L  LH     ++ H D+K SN++ +  
Sbjct: 89  DTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINAL 146

Query: 741 MEPHLAEFG 749
            +  + +FG
Sbjct: 147 GQVKMCDFG 155

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 36/177 (20%)

Query: 597 PQFTANDVLRS-FNSTECEEAARPQ----SAAGCKAV-LPTGITVSVKKI------EWGA 644
             F   +V ++ +         +P       A C AV   TG  V++KK+      E  A
Sbjct: 9   SGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFA 68

Query: 645 TR----IKIVSEFITRIGTVRHKNLIRLL------GFCYNRHQAYLLYDYLPNGNLSEKI 694
            R    ++++          RH+N+I LL          +    YL+  ++   +L + +
Sbjct: 69  KRAYRELRLLKHM-------RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGT-DLGKLM 120

Query: 695 RTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG 749
           + ++  +   ++ +V  + +GL ++H      I H DLK  N+  +E+ E  + +FG
Sbjct: 121 KHEKLGEDRIQF-LVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFG 173

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 35/146 (23%)

Query: 625 CKAVL-PTGITVSVKKIEWGATR----IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA- 678
            +A L  +G  V++KK+          ++I+ +         H N++RL  F Y+  +  
Sbjct: 71  YQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL-------DHCNIVRLRYFFYSSGEKK 123

Query: 679 -----YLLYDYLPNGNLSEKIRTKRDWAAKYKIVLG--------VARGLCFLH-HDCYPA 724
                 L+ DY+P   +    R      AK  + +         + R L ++H       
Sbjct: 124 DEVYLNLVLDYVPE-TVYRVARHY--SRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---- 176

Query: 725 IPHGDLKASNIVFDENMEP-HLAEFG 749
           I H D+K  N++ D +     L +FG
Sbjct: 177 ICHRDIKPQNLLLDPDTAVLKLCDFG 202

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 633 ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFC-YNRHQAYLLYDYLPNG 688
            TV+VK ++ GAT      ++SE    I    H N++ LLG C        ++ ++   G
Sbjct: 53  RTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 112

Query: 689 NLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 734
           NLS  +R+KR+    YK      +G  F     Y      DLK   
Sbjct: 113 NLSTYLRSKRNEFVPYKT-----KGARFRQGKDYVGAIPVDLKRRL 153

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 28/136 (20%)

Query: 631 TGITVSVKKI----EWG----ATR-IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL 681
           TG+ V++K++    E G    A R I ++ E        +H+N++RL    +  ++  L+
Sbjct: 29  TGVYVALKEVKLDSEEGTPSTAIREISLMKEL-------KHENIVRLYDVIHTENKLTLV 81

Query: 682 YDYLPNGNLSEKIRTKRDWAAKYKIVLGVA--------RGLCFLHHDCYPAIPHGDLKAS 733
           ++++ N +L + + ++        + L +         +GL F H +    I H DLK  
Sbjct: 82  FEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQ 137

Query: 734 NIVFDENMEPHLAEFG 749
           N++ ++  +  L +FG
Sbjct: 138 NLLINKRGQLKLGDFG 153

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 660 VRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTK-----RDWAAKY--KIVLGVAR 712
           + H N+IRL     +    YL+ +    G L E++  K      D AA+    ++  VA 
Sbjct: 63  LDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESD-AARIMKDVLSAVA- 120

Query: 713 GLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGF 750
              + H      + H DLK  N +F     +    L +FG 
Sbjct: 121 ---YCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGL 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	872
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.1
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.05
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.0
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.59
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.29
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.28
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.09
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.94
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.89
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.66
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.56
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.5
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.24
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.18
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.86
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.54
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.47
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.38
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.36
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.33
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.19
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.07
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	95.89
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	95.62
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	95.15
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	92.71
3mes_A	424	Choline kinase; malaria, structural genomics, stru	92.43
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	85.74
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	81.78
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	80.41

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-65  Score=618.67  Aligned_cols=525  Identities=33%  Similarity=0.499  Sum_probs=392.2

Q ss_pred             CCCCcEEECCCCCCcccCCccc-cCCCCCCEEECcCCcCcccCCcc---ccCCCCCcEEECcCCcCccccCccccCCCCC
Q 002875           17 FNELVDLNLSHNSFSGQFPVEI-FNLTSLISLDISRNNFSGHFPGG---IQSLRNLLVLDAFSNSFSGSVPAEISQLEHL   92 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~---~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L   92 (872)
                      ++.|++|+|++|.+.+..|..+ .++++|++|+|++|.+.+..|..   +.++++|++|++++|.+.+..|  +..+++|
T Consensus       125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L  202 (768)
T 3rgz_A          125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNL  202 (768)
T ss_dssp             CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTC
T ss_pred             CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcC
Confidence            4445555555554444444433 44455555555555544444433   4444444444444444443322  2567777


Q ss_pred             CEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecC
Q 002875           93 KVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGA  172 (872)
Q Consensus        93 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n  172 (872)
                      ++|+|++|.+.+..|. |+++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..  .+++|++|++++|
T Consensus       203 ~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n  279 (768)
T 3rgz_A          203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN  279 (768)
T ss_dssp             CEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSS
T ss_pred             CEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCC
Confidence            7777777777766665 777777888888777777777777777777777777777766655543  5556666666666


Q ss_pred             CCcccCCccCcCC-CCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCcc-ccCCCCCCEEEcccccCCCCC
Q 002875          173 NLSGSIPKELSNL-TKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPES-FADLKNLRLLSLMYNEMSGTV  250 (872)
Q Consensus       173 ~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~  250 (872)
                      .+.+.+|..+..+ ++|++|++++|.+.+..|..|..+++|++|++++|++++.+|.. +..+++|++|++++|++.+.+
T Consensus       280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~  359 (768)
T 3rgz_A          280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL  359 (768)
T ss_dssp             EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred             ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence            6665555555443 56666666666665555555555566666666665555444433 555555555555555554444


Q ss_pred             Cc-------------------------cccC--CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCC
Q 002875          251 PE-------------------------SLVQ--LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDIC  303 (872)
Q Consensus       251 p~-------------------------~l~~--l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~  303 (872)
                      |.                         .+..  +++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+.
T Consensus       360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  439 (768)
T 3rgz_A          360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG  439 (768)
T ss_dssp             CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence            44                         3333  55677777777777777777788888888888888888888888888


Q ss_pred             CCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccc
Q 002875          304 SGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYF  383 (872)
Q Consensus       304 ~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  383 (872)
                      .+..|+.|.+.+|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|..+..+++|++|
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL  519 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence            88888888888888888888888888889999999999888888888889999999999999998889888889999999


Q ss_pred             cccCCCCCCCcCCcccCCCcccccccccccccCCCCCC------------------------------------------
Q 002875          384 NVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP------------------------------------------  421 (872)
Q Consensus       384 ~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~------------------------------------------  421 (872)
                      ++++| .+.+.+|..+..+++|+.|++++|.+++.+|.                                          
T Consensus       520 ~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          520 KLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             ECCSS-CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             ECCCC-cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence            99998 45567888888899999999999988765552                                          


Q ss_pred             -----------------------------CCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccC
Q 002875          422 -----------------------------FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLAR  472 (872)
Q Consensus       422 -----------------------------~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  472 (872)
                                                   +..++.++.++++.|.++|.+|..+.++++|+.|+|++|++++.+|..++.
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  678 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD  678 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence                                         233567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCccccccCCccccCCCCCCCCCCCCCCCCcc
Q 002875          473 LPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCHASVA  547 (872)
Q Consensus       473 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~l~~~~~~~~  547 (872)
                      ++.|++|||++|+++|.+|..+..+++|++|++++|+++|.+|....+..+...+|.|||.+||.|+.+|....+
T Consensus       679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~  753 (768)
T 3rgz_A          679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA  753 (768)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999988876543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-59  Score=567.77  Aligned_cols=517  Identities=32%  Similarity=0.488  Sum_probs=389.9

Q ss_pred             cchhhhcCCCCcEEECCCCCCcccCCc--cccCCCCCCEEECcCCcCcccCCccc-cCCCCCcEEECcCCcCccccCcc-
Q 002875           10 GKPLRIFFNELVDLNLSHNSFSGQFPV--EIFNLTSLISLDISRNNFSGHFPGGI-QSLRNLLVLDAFSNSFSGSVPAE-   85 (872)
Q Consensus        10 ~~~~~~~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~LdL~~n~l~~~~p~~-   85 (872)
                      ..+.+  +++|++|+|++|.+++.+|.  .+.++++|++|+|++|.+.+..|..+ ..+++|++||+++|.+++..|.. 
T Consensus        94 ~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  171 (768)
T 3rgz_A           94 SGFKC--SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW  171 (768)
T ss_dssp             CCCCC--CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred             hhhcc--CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence            45555  78889999999998887887  88889999999999998887777665 78899999999999988877776 


Q ss_pred             --ccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCC
Q 002875           86 --ISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSE  163 (872)
Q Consensus        86 --~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~  163 (872)
                        +.++++|++|++++|.+.+..|  +..+++|++|+|++|.+++.+|. ++.+++|++|++++|.+.+.+|..+.++++
T Consensus       172 ~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  248 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE  248 (768)
T ss_dssp             HHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred             hhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence              7889999999999998887554  48899999999999999988887 999999999999999999999999999999


Q ss_pred             CcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccC-CCCCEEeCcCCCCcCcCCccccCCCCCCEEEcc
Q 002875          164 VQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRV-TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM  242 (872)
Q Consensus       164 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  242 (872)
                      |++|++++|.+.+.+|..  .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++..|..|+.+++|+.|+++
T Consensus       249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  326 (768)
T 3rgz_A          249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS  326 (768)
T ss_dssp             CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence            999999999999888875  89999999999999999888888765 999999999999999999999999999999999


Q ss_pred             cccCCCCCCcc-ccCCCCcceeecccccccccCCccCCCCC-CCcEEecCCCeeeecCCCCCCC--CCceeEEEcCCCcC
Q 002875          243 YNEMSGTVPES-LVQLPSLEILFIWNNYFSGSLPENLGRNS-KLRWVDVSTNNFNGSIPPDICS--GGVLFKLILFSNNF  318 (872)
Q Consensus       243 ~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~~~-~L~~L~ls~n~l~~~~p~~~~~--~~~l~~l~l~~n~~  318 (872)
                      +|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|+.++.  ...++.|.+.+|.+
T Consensus       327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence            99999778765 89999999999999999888887776665 6666666666666655555443  34455555555555


Q ss_pred             CCCCCC------------------------CCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchh
Q 002875          319 TGSLSP------------------------SLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDI  374 (872)
Q Consensus       319 ~~~~~~------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  374 (872)
                      .+.+|.                        .+..+++|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|..+
T Consensus       407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence            444444                        44444455555555555554455555555555555555555555555555


Q ss_pred             hhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCCCCC-CCcCCccceeeccccccCCCCCCcc-------
Q 002875          375 NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNLSGTIPESV-------  446 (872)
Q Consensus       375 ~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~l~~l~l~~n~l~~~~p~~~-------  446 (872)
                      ..+++|++|++++| .+.+.+|..+..+++|+.|++++|.+++.+|. +..+++|+.++++.|.+.|.+|..+       
T Consensus       487 ~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          487 SNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             GGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             hcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            55555555555555 23345555555566666666666666555543 4566667777777766666555432       


Q ss_pred             ---------------------------------------------------------------cccccCcEEEccCccce
Q 002875          447 ---------------------------------------------------------------SNCVELERIDLANNKLI  463 (872)
Q Consensus       447 ---------------------------------------------------------------~~l~~L~~L~Ls~N~l~  463 (872)
                                                                                     ..+++|++|||++|+++
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence                                                                           23456777777777777


Q ss_pred             eccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCc-cccccCCccccCCCCC
Q 002875          464 GSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGK-VLRLMGSSAYAGNPKL  534 (872)
Q Consensus       464 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~~~~~~~~~~~np~~  534 (872)
                      +.+|..++.++.|+.|+|++|+++|.+|..|+.+++|++||+++|+++|.+|..- .+..+....+.+|+..
T Consensus       646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            7777777778888888888888888888888888888888888888888777542 2333444455666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-54  Score=518.05  Aligned_cols=522  Identities=22%  Similarity=0.186  Sum_probs=393.3

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      +.+++|+|++|.++++.+.+|.++++|++|+|++|.+.+..|+.|..+++|++|++++|.+++..+..|.++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            57888999999888888788888888999999888888888888888888999999888888666667888888999999


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCcccc--CCCCCcEEEeecCCCc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLG--NMSEVQYLDIAGANLS  175 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~ls~n~l~  175 (872)
                      ++|.+.+..|..|+++++|++|+|++|.+++..|..++.+++|++|++++|.+.+..+..+.  .+++|+.|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            88888877778888888899999988888888888888888888888888887766655443  4577788888877777


Q ss_pred             ccCCccCcCC---------------------------CCCCEEEccCCCCcccCCcccccCCC--CCEEeCcCCCCcCcC
Q 002875          176 GSIPKELSNL---------------------------TKLESLFLFRNQLAGQVPWEFSRVTT--LKSLDLSDNRLSGPI  226 (872)
Q Consensus       176 ~~~p~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~  226 (872)
                      +..|..+..+                           ++|+.|++++|.+.+..|..|..++.  |++|++++|++++..
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            6666544432                           34555555666665555555555533  666666666666555


Q ss_pred             CccccCCCCCCEEEcccccCCCCCCcccc---------------------------------CCCCcceeeccccccccc
Q 002875          227 PESFADLKNLRLLSLMYNEMSGTVPESLV---------------------------------QLPSLEILFIWNNYFSGS  273 (872)
Q Consensus       227 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~---------------------------------~l~~L~~L~l~~n~l~~~  273 (872)
                      |..|+.+++|+.|++++|++.+..|..+.                                 .+++|++|++++|.+.+.
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence            55666666666666666665554444444                                 445555555555555555


Q ss_pred             CCccCCCCCCCcEEecCCCeeeec-CCCC-CC--CCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccC-c
Q 002875          274 LPENLGRNSKLRWVDVSTNNFNGS-IPPD-IC--SGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIP-L  348 (872)
Q Consensus       274 ~p~~~~~~~~L~~L~ls~n~l~~~-~p~~-~~--~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~  348 (872)
                      .+..+..+++|++|++++|.+... ++.. +.  ....++.+++.+|++.+..+..+..+++|+.|++++|.+++.++ .
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence            555555556666666665543221 1111 11  11356677777777777777788888888888888888877655 5


Q ss_pred             cCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCC-CcCCcccCCCcccccccccccccCCCCCC-CCcCC
Q 002875          349 KFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLG-GMIPAQTWSLPSLQNFSASACNITGNLPP-FKSCK  426 (872)
Q Consensus       349 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~  426 (872)
                      .|.++++|++|++++|++.+..+..+..+++|+.|++++|.... +..|..+..+++|+.|++++|.+++..+. +..++
T Consensus       425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  504 (680)
T 1ziw_A          425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE  504 (680)
T ss_dssp             GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence            78888888888888888887777888888888888888885321 45677788899999999999999876654 68899


Q ss_pred             ccceeeccccccCCCCC--------CcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCC
Q 002875          427 SISVIESHMNNLSGTIP--------ESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCS  498 (872)
Q Consensus       427 ~l~~l~l~~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  498 (872)
                      +|+.|++++|.+.+..+        ..+.++++|++|+|++|++....+..|..+++|+.|+|++|++++..+..|..++
T Consensus       505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  584 (680)
T 1ziw_A          505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV  584 (680)
T ss_dssp             TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence            99999999999875422        2378899999999999999977777899999999999999999998888999999


Q ss_pred             CCcEEECcCCeeeecCCCCc--cccccCCccccCCCCCCCCCC
Q 002875          499 SLTVLNVSFNDISGSIPSGK--VLRLMGSSAYAGNPKLCGAPL  539 (872)
Q Consensus       499 ~L~~L~ls~N~l~~~~p~~~--~~~~~~~~~~~~np~~c~~~l  539 (872)
                      +|++|++++|++++..|...  .+..+....+.+||+.|+|+.
T Consensus       585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            99999999999997554321  345566778999999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.1e-54  Score=505.15  Aligned_cols=509  Identities=19%  Similarity=0.177  Sum_probs=434.0

Q ss_pred             cCCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccc
Q 002875            7 ALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEI   86 (872)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~   86 (872)
                      .||...    .+.+++|+|++|.|+++.|.+|.++++|++|+|++|.+.+..|++|.++++|++|++++|.+.+..|.+|
T Consensus        26 ~iP~~l----~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           26 EIPGTL----PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL  101 (606)
T ss_dssp             SCCTTS----CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred             cCcCCC----CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence            455543    3469999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             cCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCc-
Q 002875           87 SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ-  165 (872)
Q Consensus        87 ~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~-  165 (872)
                      +++++|++|+|++|.+.+..|..|+++++|++|++++|.+++.....+..+++|++|++++|.+.+..|..+..+++|+ 
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN  181 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred             cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence            9999999999999999987788899999999999999999886555555699999999999999988888899999999 


Q ss_pred             -EEEeecCCCcccCCccCcCCCCCCEEEccCCCCc--------------------------ccCCcccccCC--CCCEEe
Q 002875          166 -YLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA--------------------------GQVPWEFSRVT--TLKSLD  216 (872)
Q Consensus       166 -~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--------------------------~~~~~~~~~l~--~L~~L~  216 (872)
                       .|++++|.+.+..|..+.. .+|+.|++++|...                          ...+..|..+.  +|+.|+
T Consensus       182 l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~  260 (606)
T 3t6q_A          182 LSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN  260 (606)
T ss_dssp             EEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred             eEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence             8999999999888777654 67889988876511                          11122233332  688999


Q ss_pred             CcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeee
Q 002875          217 LSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG  296 (872)
Q Consensus       217 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~  296 (872)
                      +++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence            9999999888888999999999999999988 677888999999999999999998888888999999999999999887


Q ss_pred             cCCCC-CCCCCceeEEEcCCCcCCCCC--CCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCc-
Q 002875          297 SIPPD-ICSGGVLFKLILFSNNFTGSL--SPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPT-  372 (872)
Q Consensus       297 ~~p~~-~~~~~~l~~l~l~~n~~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-  372 (872)
                      .+|.. +.....|+.+++++|.+.+..  +..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+.+..+. 
T Consensus       340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            77765 667788999999999988765  67788999999999999999988888899999999999999998877654 


Q ss_pred             hhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCC-C---CCCCcCCccceeeccccccCCCCCCcccc
Q 002875          373 DINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN-L---PPFKSCKSISVIESHMNNLSGTIPESVSN  448 (872)
Q Consensus       373 ~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~-~---~~~~~~~~l~~l~l~~n~l~~~~p~~~~~  448 (872)
                      .+..+++|++|++++|. +.+..|..+..+++|++|++++|.+++. +   ..+..+++|+.|+++.|.+.+..|..+.+
T Consensus       420 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  498 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS  498 (606)
T ss_dssp             TTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence            47888999999999984 4555677777889999999999988762 2   23577888999999999998888888889


Q ss_pred             cccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCcccccc
Q 002875          449 CVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLM  523 (872)
Q Consensus       449 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~  523 (872)
                      +++|++|+|++|++++..|+.+..++.| .|++++|++++..|..|..+++|++|++++|++++.++..+...|+
T Consensus       499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~  572 (606)
T 3t6q_A          499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY  572 (606)
T ss_dssp             CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred             ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence            9999999999999998888899999999 9999999999888888888889999999999998877755444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.5e-53  Score=505.66  Aligned_cols=510  Identities=20%  Similarity=0.220  Sum_probs=411.9

Q ss_pred             chhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCC
Q 002875           11 KPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLE   90 (872)
Q Consensus        11 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~   90 (872)
                      .+.+  ++.|++|+|++|.++++.|.+|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+.+..|.+|++++
T Consensus        44 ~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  121 (680)
T 1ziw_A           44 NFTR--YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK  121 (680)
T ss_dssp             GGGG--GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred             HHhC--CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence            4556  78899999999999888888888899999999999988876666788999999999999988877778888899


Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCC--CCCCCCEEEccCccCcccCCccc----------
Q 002875           91 HLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG--MLKTVTHMEIGYNFYQGNIPWQL----------  158 (872)
Q Consensus        91 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~L~~L~~L~l~~n~~~~~~p~~~----------  158 (872)
                      +|++|+|++|.+.+..|..|+++++|++|++++|.+++..+..+.  .+++|+.|++++|.+.+..|..+          
T Consensus       122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF  201 (680)
T ss_dssp             TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred             CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence            999999999988888888888888888888888888776665543  44667777777776655444333          


Q ss_pred             -----------------------------------------cCCC--CCcEEEeecCCCcccCCccCcCCCCCCEEEccC
Q 002875          159 -----------------------------------------GNMS--EVQYLDIAGANLSGSIPKELSNLTKLESLFLFR  195 (872)
Q Consensus       159 -----------------------------------------~~l~--~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~  195 (872)
                                                               .++.  +|+.|++++|.+.+..|..+..+++|++|++++
T Consensus       202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY  281 (680)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence                                                     2222  256666666666655555566666666666666


Q ss_pred             CCCcccCCcccccCCCCCEEeCcCCCCcC-----cCCc----cccCCCCCCEEEcccccCCCCCCccccCCCCcceeecc
Q 002875          196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSG-----PIPE----SFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIW  266 (872)
Q Consensus       196 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  266 (872)
                      |.+.+..|..|..+++|++|++++|...+     .+|.    .|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  361 (680)
T 1ziw_A          282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS  361 (680)
T ss_dssp             CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred             CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence            66666555566666666666666543322     1222    56778889999999999998888889999999999999


Q ss_pred             ccccccc--CCccCCC--CCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCC-CCCCCCCCCcEEEcCCCc
Q 002875          267 NNYFSGS--LPENLGR--NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLS-PSLSNCSSLVRLRLEDNS  341 (872)
Q Consensus       267 ~n~l~~~--~p~~~~~--~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~l~~L~~L~L~~N~  341 (872)
                      +|.+...  .+..+..  .++|+.|++++|.+.+..|..+.....|+.|++++|.+.+.++ ..+.++++|+.|++++|+
T Consensus       362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            9985432  2223332  3589999999999998888888889999999999999987665 678999999999999999


Q ss_pred             cccccCccCCCCCCCcEEEcCCCcCC--CCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCC-
Q 002875          342 FSGEIPLKFSQLPDINYIDLSRNGFT--GGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN-  418 (872)
Q Consensus       342 l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~-  418 (872)
                      +.+..+..|..+++|+.|++++|.+.  +.+|..+..+++|++|++++|. +.+..+..+..+++|+.|++++|.+++. 
T Consensus       442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLW  520 (680)
T ss_dssp             EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred             cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccc
Confidence            99999999999999999999999986  5678899999999999999994 5556666788899999999999998752 


Q ss_pred             --------CCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCcccccc
Q 002875          419 --------LPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQI  490 (872)
Q Consensus       419 --------~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  490 (872)
                              ...+..+++|+.++++.|.+....+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus       521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence                    123688999999999999999655567999999999999999999988889999999999999999999999


Q ss_pred             Ccccc-CCCCCcEEECcCCeeeecCCC-Ccccccc
Q 002875          491 PAKFG-SCSSLTVLNVSFNDISGSIPS-GKVLRLM  523 (872)
Q Consensus       491 ~~~~~-~l~~L~~L~ls~N~l~~~~p~-~~~~~~~  523 (872)
                      +..|. .+++|+.|++++|++.+.++. .++..|+
T Consensus       601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~  635 (680)
T 1ziw_A          601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI  635 (680)
T ss_dssp             HHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred             hhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence            98887 789999999999999998885 5555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-52  Score=510.07  Aligned_cols=492  Identities=20%  Similarity=0.173  Sum_probs=303.0

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcc-cCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG-HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      .+.+++|||++|.|+++.|.+|.++++|++|+|++|.+.+ +.|++|+++++|++|+|++|.+.+..|.+|.++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            5689999999999999999999999999999999996544 448899999999999999999998889999999999999


Q ss_pred             EccCCcccccCCcc--cCCCCCCcEeeCccCcCCccCC-ccCCCCCCCCEEEccCccCcccCCccccCC--CCCcEEEee
Q 002875           96 NLAGSYFSGPIPSQ--FGSFKSLEFLHLAGNLLNDQIP-AELGMLKTVTHMEIGYNFYQGNIPWQLGNM--SEVQYLDIA  170 (872)
Q Consensus        96 ~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l--~~L~~L~ls  170 (872)
                      +|++|.+.+..|..  |+++++|++|+|++|.+++..+ ..|+.+++|++|++++|.+.+..+..+..+  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            99999998866655  9999999999999999987755 579999999999999999998888888877  899999999


Q ss_pred             cCCCcccCCccCcCCCC------CCEEEccCCCCcccCCcccccC---CCCCEEeCcC---------CCCcCcCCccccC
Q 002875          171 GANLSGSIPKELSNLTK------LESLFLFRNQLAGQVPWEFSRV---TTLKSLDLSD---------NRLSGPIPESFAD  232 (872)
Q Consensus       171 ~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~---------N~l~~~~~~~~~~  232 (872)
                      +|.+.+..|..+..+++      |+.|++++|.+.+..+..+...   +.++.|.++.         +.+....+..|.+
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            99999888887776665      9999999998887666555432   2344444331         1122222222333


Q ss_pred             C--CCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeE
Q 002875          233 L--KNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFK  310 (872)
Q Consensus       233 l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~  310 (872)
                      +  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..+..+..|+.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence            2  34455555555444444444444455555555555544444444444445555555555444443444444444555


Q ss_pred             EEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccc------------------cCccCCCCCCCcEEEcCCCcCCCCCCc
Q 002875          311 LILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGE------------------IPLKFSQLPDINYIDLSRNGFTGGIPT  372 (872)
Q Consensus       311 l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~  372 (872)
                      |++.+|.+....+..|.++++|+.|++++|.+++.                  +|..   ..+++.|++++|++.+....
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~  419 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDIL  419 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTH
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---ccccceeecccCccccCchh
Confidence            55555544444444444445555555555544421                  1211   23344455555544432111


Q ss_pred             -hhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCCC------CCCCcCCccceeeccccccCCCCCCc
Q 002875          373 -DINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNL------PPFKSCKSISVIESHMNNLSGTIPES  445 (872)
Q Consensus       373 -~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~------~~~~~~~~l~~l~l~~n~l~~~~p~~  445 (872)
                       .+..+++|++|++++|....-........+++|+.|++++|.++...      ..+..+++|+.|++++|.+++..|..
T Consensus       420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  499 (844)
T 3j0a_A          420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV  499 (844)
T ss_dssp             HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred             hhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence             12244455555555553211111111223445555555555443211      11344455555555555555544444


Q ss_pred             ccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCC
Q 002875          446 VSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS  516 (872)
Q Consensus       446 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~  516 (872)
                      |.++++|++|+|++|++++..+..+.  ++|+.|+|++|++++..|..|.   +|+.|++++|++.+.++.
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL  565 (844)
T ss_dssp             SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred             ccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence            55555555555555555544444433  4455555555555555544432   445555555555544443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.2e-52  Score=489.04  Aligned_cols=515  Identities=18%  Similarity=0.149  Sum_probs=451.0

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .-+.++.++..++ .+|..+.  .++++|+|++|.|++..|.+|..+++|++||+++|.+.+..|.+|.++++|++|+|+
T Consensus        13 ~~~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           13 VNKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence            3557899999887 4566666  479999999999999989999999999999999999999999999999999999999


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+.+..|..|+++++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus        90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A           90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred             CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence            99999999999999999999999999999888889999999999999999998744334445999999999999999888


Q ss_pred             CccCcCCCCCC--EEEccCCCCcccCCcccccCCCCCEEeCcCCCCc--------------------------CcCCccc
Q 002875          179 PKELSNLTKLE--SLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS--------------------------GPIPESF  230 (872)
Q Consensus       179 p~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------------------~~~~~~~  230 (872)
                      |..++.+++|+  .|++++|.+.+..|..|.. .+|+.|++++|...                          ...+..+
T Consensus       170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~  248 (606)
T 3t6q_A          170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF  248 (606)
T ss_dssp             HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred             hhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence            88999999999  8999999999988877655 57899999887511                          1112233


Q ss_pred             cCCC--CCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCce
Q 002875          231 ADLK--NLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVL  308 (872)
Q Consensus       231 ~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l  308 (872)
                      ..+.  +|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+.....|
T Consensus       249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  327 (606)
T 3t6q_A          249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL  327 (606)
T ss_dssp             GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred             chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence            3333  7899999999999888888999999999999999998 688889999999999999999997777788888999


Q ss_pred             eEEEcCCCcCCCCCCC-CCCCCCCCcEEEcCCCcccccc--CccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccc
Q 002875          309 FKLILFSNNFTGSLSP-SLSNCSSLVRLRLEDNSFSGEI--PLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNV  385 (872)
Q Consensus       309 ~~l~l~~n~~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  385 (872)
                      +.+.+.+|.+.+.++. .+..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus       328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence            9999999999877665 4899999999999999999876  778999999999999999999888999999999999999


Q ss_pred             cCCCCCCCcCCcccCCCcccccccccccccCCCCCC-CCcCCccceeeccccccCCC---CCCcccccccCcEEEccCcc
Q 002875          386 SNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNLSGT---IPESVSNCVELERIDLANNK  461 (872)
Q Consensus       386 s~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~l~~l~l~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~  461 (872)
                      ++|.......+..+..+++|+.|++++|.+++..|. +..+++|+.|+++.|.+.+.   .+..+..+++|++|++++|+
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            999654333344577899999999999999887664 68899999999999999762   34678999999999999999


Q ss_pred             ceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCC-ccccccCCccccCCCCCCCCCC
Q 002875          462 LIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG-KVLRLMGSSAYAGNPKLCGAPL  539 (872)
Q Consensus       462 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~np~~c~~~l  539 (872)
                      +++..|..|..+++|++|+|++|++++..|..|..+++| +|++++|++++..|.. .....+....+.+||+.|+|+.
T Consensus       488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999999999999999999999999999999 9999999999765543 2344567778999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1e-51  Score=487.12  Aligned_cols=509  Identities=19%  Similarity=0.194  Sum_probs=262.9

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      +.+++|+|++|.++++.+.+|.++++|++|+|++|.+.++.|++|.++++|++|+|++|.+++..|.+|+++++|++|+|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            45666666666666666666666666666666666666666666666666666666666666655666666666666666


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCc-cCCccCCCCCCCCEEEccCccCcccCCccccCCCCCc----EEEeecC
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ----YLDIAGA  172 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~----~L~ls~n  172 (872)
                      ++|.+.+..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|.+.+..|..+..+.+|+    .|++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            6666665555666666666666666666654 3466666666666666666666665555555444333    5666666


Q ss_pred             CCcccCCccCcCCCCCCEEEccCCCCc-ccCCcccccCCCCCEEeCcCCCCcC------cCCccccCCC--CCCEEEc-c
Q 002875          173 NLSGSIPKELSNLTKLESLFLFRNQLA-GQVPWEFSRVTTLKSLDLSDNRLSG------PIPESFADLK--NLRLLSL-M  242 (872)
Q Consensus       173 ~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~--~L~~L~L-~  242 (872)
                      .+.+..+..+... +|+.|++++|.+. +..|..+.+++.|+.+++..+.+..      ..+..+..+.  .++.+++ .
T Consensus       192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  270 (606)
T 3vq2_A          192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY  270 (606)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred             CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence            6665444444333 6666666666654 2333444555555544442111100      0000011111  1111222 3


Q ss_pred             cccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCC
Q 002875          243 YNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSL  322 (872)
Q Consensus       243 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~  322 (872)
                      .|.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ ....++.+.+.+|...+..
T Consensus       271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          271 TNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             CTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred             cccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence            3333333333 444555555555555543 233 444455555555555555 3444 22 4445555555555333222


Q ss_pred             CCCCCCCCCCcEEEcCCCccccc--cCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCC-ccc
Q 002875          323 SPSLSNCSSLVRLRLEDNSFSGE--IPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIP-AQT  399 (872)
Q Consensus       323 ~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~-~~~  399 (872)
                        .+..+++|+.|++++|.+++.  .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.. .+..+ ..+
T Consensus       345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~  420 (606)
T 3vq2_A          345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL-KRVTEFSAF  420 (606)
T ss_dssp             --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE-ESTTTTTTT
T ss_pred             --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc-CCccChhhh
Confidence              334455555555555555443  24444455555555555555443 334444555555555555522 22222 334


Q ss_pred             CCCcccccccccccccCCCCCC-CCcCCccceeeccccccCC-CCCCcccccccCcEEEccCccceeccchhccCCCCCC
Q 002875          400 WSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNLSG-TIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLG  477 (872)
Q Consensus       400 ~~l~~L~~L~l~~~~l~~~~~~-~~~~~~l~~l~l~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  477 (872)
                      ..+++|+.|++++|.+++..|. +..+++|+.++++.|.+.+ .+|..+.++++|++|++++|++++..|..+..+++|+
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  500 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ  500 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence            4455555555555555443332 3445555555555555554 2445555555555555555555555555555555555


Q ss_pred             EEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCC-ccc-cccCCccccCCCCCCCCC
Q 002875          478 VLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG-KVL-RLMGSSAYAGNPKLCGAP  538 (872)
Q Consensus       478 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~-~~~~~~~~~~np~~c~~~  538 (872)
                      +|++++|++++..|..|..+++|++|++++|+++ .+|.. ... +.+....+.+||+.|+|+
T Consensus       501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            5555555555555555555555555555555555 23322 011 113333455555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-51  Score=485.37  Aligned_cols=503  Identities=19%  Similarity=0.200  Sum_probs=433.6

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      ...+.++.+++.++.+ |..+.  ++|++|+|++|.+.+..+..|.++++|++||+++|.+++..|.+|.++++|++|+|
T Consensus        11 ~~~~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           11 VPNITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             ETTTEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCceEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            3457899999999854 55555  89999999999999998889999999999999999999888999999999999999


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcc-cCCccccCCCCCcEEEeecCCCcc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG-NIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      ++|.+.+..|..|+++++|++|+|++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            9999999889999999999999999999998888899999999999999999876 679999999999999999999999


Q ss_pred             cCCccCcCCCCCC----EEEccCCCCcccCCcccccCCCCCEEeCcCCCCc-CcCCccccCCCCCCEEEcccccCCCC--
Q 002875          177 SIPKELSNLTKLE----SLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS-GPIPESFADLKNLRLLSLMYNEMSGT--  249 (872)
Q Consensus       177 ~~p~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--  249 (872)
                      ..|..++.+++|+    +|++++|.+.+..+..+... +|+.|++++|.++ +..|..+..+++|+.+++..+.+...  
T Consensus       168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             cChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            8888887776655    89999999998877777665 8999999999987 35678899999999999877665432  


Q ss_pred             ----CCccccCCC--Ccceeec-ccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCC
Q 002875          250 ----VPESLVQLP--SLEILFI-WNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSL  322 (872)
Q Consensus       250 ----~p~~l~~l~--~L~~L~l-~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~  322 (872)
                          .+..+..+.  +++.+++ ..|.+.+..|. +..+++|+.|++++|.+. .+| .+.....++.+.+.+|.+ +.+
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~l  322 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQF  322 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSC
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccc
Confidence                112222222  4566677 67788888887 889999999999999996 566 777888999999999999 667


Q ss_pred             CCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCC--CCchhhhhcccccccccCCCCCCCcCCcccC
Q 002875          323 SPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGG--IPTDINQASKLEYFNVSNNPKLGGMIPAQTW  400 (872)
Q Consensus       323 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~  400 (872)
                      | .+ .+++|+.|++++|+..+..  .+..+++|++|++++|.+.+.  +|..+..+++|++|++++|...  .+|..+.
T Consensus       323 p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~  396 (606)
T 3vq2_A          323 P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFM  396 (606)
T ss_dssp             C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE--EECCCCT
T ss_pred             c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc--cchhhcc
Confidence            7 45 8999999999999665544  678999999999999999866  4788899999999999999632  3567788


Q ss_pred             CCcccccccccccccCCCCC--CCCcCCccceeeccccccCCCCCCcccccccCcEEEccCcccee-ccchhccCCCCCC
Q 002875          401 SLPSLQNFSASACNITGNLP--PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIG-SIPEVLARLPVLG  477 (872)
Q Consensus       401 ~l~~L~~L~l~~~~l~~~~~--~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~  477 (872)
                      .+++|+.|++++|.+.+..|  .+..+++|+.++++.|.+.+..|..+.++++|++|++++|++.+ .+|..+..+++|+
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence            89999999999999988766  57899999999999999999999999999999999999999998 5789999999999


Q ss_pred             EEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCc-cccccCCccccCCCCC
Q 002875          478 VLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGK-VLRLMGSSAYAGNPKL  534 (872)
Q Consensus       478 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~~~~~~~~~~~np~~  534 (872)
                      +|++++|++++..|..|..+++|++|++++|++++..|..- ....+....+.+|...
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            99999999999999999999999999999999998765431 2334455566677543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-49  Score=481.54  Aligned_cols=471  Identities=20%  Similarity=0.225  Sum_probs=402.6

Q ss_pred             CcccCCcchhhhcCCCCcEEECCCCCC-cccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCcccc
Q 002875            4 LSGALPGKPLRIFFNELVDLNLSHNSF-SGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV   82 (872)
Q Consensus         4 ~~~~~~~~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~   82 (872)
                      +.+..|..+.+  ++.|++|+|++|.+ ..+.|.+|.++++|++|+|++|.+.+..|+.|.++++|++|+|++|.+++..
T Consensus        36 i~~i~~~~~~~--l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  113 (844)
T 3j0a_A           36 IRTVTASSFPF--LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV  113 (844)
T ss_dssp             CCEECSSSCSS--CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred             CCccChhHCcc--cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence            45555667777  89999999999954 4455889999999999999999999999999999999999999999999866


Q ss_pred             Ccc--ccCCCCCCEEEccCCcccccCC-cccCCCCCCcEeeCccCcCCccCCccCCCC--CCCCEEEccCccCcccCCcc
Q 002875           83 PAE--ISQLEHLKVLNLAGSYFSGPIP-SQFGSFKSLEFLHLAGNLLNDQIPAELGML--KTVTHMEIGYNFYQGNIPWQ  157 (872)
Q Consensus        83 p~~--~~~L~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L--~~L~~L~l~~n~~~~~~p~~  157 (872)
                      |..  |.++++|++|+|++|.+.+..+ ..|+++++|++|+|++|.+++..+..+..+  ++|+.|+++.|.+.+..|..
T Consensus       114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~  193 (844)
T 3j0a_A          114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD  193 (844)
T ss_dssp             STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred             ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence            665  9999999999999999987655 579999999999999999999999999888  89999999999999888877


Q ss_pred             ccCCCC------CcEEEeecCCCcccCCccCcC--------------------------------------CCCCCEEEc
Q 002875          158 LGNMSE------VQYLDIAGANLSGSIPKELSN--------------------------------------LTKLESLFL  193 (872)
Q Consensus       158 ~~~l~~------L~~L~ls~n~l~~~~p~~l~~--------------------------------------l~~L~~L~L  193 (872)
                      +..+.+      |+.|++++|.+.+..+..+..                                      .++|+.|++
T Consensus       194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~L  273 (844)
T 3j0a_A          194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL  273 (844)
T ss_dssp             CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred             hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEEC
Confidence            766655      999999999887665544321                                      267999999


Q ss_pred             cCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeeccccccccc
Q 002875          194 FRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGS  273 (872)
Q Consensus       194 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  273 (872)
                      ++|.+.+..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus       274 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  353 (844)
T 3j0a_A          274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII  353 (844)
T ss_dssp             TTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred             CCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence            99999988888899999999999999999988888999999999999999999988888999999999999999999888


Q ss_pred             CCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccC-ccCCC
Q 002875          274 LPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIP-LKFSQ  352 (872)
Q Consensus       274 ~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~  352 (872)
                      .+..+..+++|+.|++++|.+.+ ++    ..+.++.+.+.+|++... |..   ..+++.|++++|++++... ..+..
T Consensus       354 ~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~  424 (844)
T 3j0a_A          354 QDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLR  424 (844)
T ss_dssp             CSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred             ChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcccc-ccc---ccccceeecccCccccCchhhhhhc
Confidence            88889999999999999999873 22    256789999999998843 332   5679999999999986532 23568


Q ss_pred             CCCCcEEEcCCCcCCCCCCc-hhhhhcccccccccCCCCCC----CcCCcccCCCcccccccccccccCCCCCC-CCcCC
Q 002875          353 LPDINYIDLSRNGFTGGIPT-DINQASKLEYFNVSNNPKLG----GMIPAQTWSLPSLQNFSASACNITGNLPP-FKSCK  426 (872)
Q Consensus       353 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~n~~l~----~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~  426 (872)
                      +++|+.|++++|++++..+. .+..+++|++|++++|....    +..+..+..+++|+.|++++|.+++..|. +..++
T Consensus       425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  504 (844)
T 3j0a_A          425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT  504 (844)
T ss_dssp             CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred             CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence            99999999999999876543 35567899999999995431    33345567889999999999999987765 68999


Q ss_pred             ccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCcccccc
Q 002875          427 SISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQI  490 (872)
Q Consensus       427 ~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  490 (872)
                      +|+.|+++.|.+++..|..+.  ++|+.|+|++|++++..|..|   +.|+.|++++|.+...-
T Consensus       505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC  563 (844)
T ss_dssp             SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred             hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence            999999999999987777665  899999999999999998775   47899999999987643

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=5.3e-51  Score=430.83  Aligned_cols=245  Identities=17%  Similarity=0.199  Sum_probs=197.1

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||+||||+.      .+++.||||+++...  ...+.|.+|+.++++++|||||+++|+|.+++..|||||
T Consensus        30 ~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~E  109 (308)
T 4gt4_A           30 FMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFS  109 (308)
T ss_dssp             EEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEE
Confidence            667899999999999985      367899999997532  235789999999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeE
Q 002875          684 YLPNGNLSEKIRT------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL  745 (872)
Q Consensus       684 y~~~g~L~~~l~~------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki  745 (872)
                      ||++|||.++|+.                  ..+|.++..|+.|||+||+|||+.   +||||||||+|||+++++.+||
T Consensus       110 y~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~~Ki  186 (308)
T 4gt4_A          110 YCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKI  186 (308)
T ss_dssp             CCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEE
T ss_pred             cCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCCEEE
Confidence            9999999999953                  357899999999999999999999   9999999999999999999999


Q ss_pred             ccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccc
Q 002875          746 AEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       746 ~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      +|||+++.......    ....++..|++||+.....++.++|||||||++|||+| |..||.+....      .....+
T Consensus       187 ~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~------~~~~~i  260 (308)
T 4gt4_A          187 SDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ------DVVEMI  260 (308)
T ss_dssp             CCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH------HHHHHH
T ss_pred             CCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH------HHHHHH
Confidence            99999986533221    12235556788898888899999999999999999999 67777643211      111111


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ......+.++   +.+.++.+++.+||+.||++||||+||+++|+.+.
T Consensus       261 ~~~~~~~~p~---~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~  305 (308)
T 4gt4_A          261 RNRQVLPCPD---DCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG  305 (308)
T ss_dssp             HTTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             HcCCCCCCcc---cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence            1111111122   23356778999999999999999999999998764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=4.7e-51  Score=429.31  Aligned_cols=245  Identities=18%  Similarity=0.220  Sum_probs=196.6

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.||+|+||+||+|+.      .+|+.||||+++... ...+.|.+|+++|++++|||||+++|+|.+++..||||||
T Consensus        17 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey   96 (299)
T 4asz_A           17 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEY   96 (299)
T ss_dssp             EEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             EeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEc
Confidence            678899999999999985      358899999997643 3467899999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC---------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccc
Q 002875          685 LPNGNLSEKIRT---------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG  749 (872)
Q Consensus       685 ~~~g~L~~~l~~---------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg  749 (872)
                      |++|||.++|+.               ..+|.++..|+.|||+||+|||++   +||||||||+|||+++++.+||+|||
T Consensus        97 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki~DFG  173 (299)
T 4asz_A           97 MKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFG  173 (299)
T ss_dssp             CTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCS
T ss_pred             CCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEECCcc
Confidence            999999999964               358999999999999999999999   99999999999999999999999999


Q ss_pred             ccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccc
Q 002875          750 FKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNEN  824 (872)
Q Consensus       750 ~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~  824 (872)
                      +|+.......    ....++..|++||+.....++.++|||||||++|||+| |+.||.+....      +.+..+....
T Consensus       174 la~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~------~~~~~i~~~~  247 (299)
T 4asz_A          174 MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN------EVIECITQGR  247 (299)
T ss_dssp             CHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH------HHHHHHHHTC
T ss_pred             cceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH------HHHHHHHcCC
Confidence            9976433221    11235566788899988899999999999999999999 78887643211      1111111111


Q ss_pred             ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          825 EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       825 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ....++   ..+.++.+++.+||+.||++||||+|+.+.|+.+.
T Consensus       248 ~~~~p~---~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~  288 (299)
T 4asz_A          248 VLQRPR---TCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLA  288 (299)
T ss_dssp             CCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCCCc---cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            111122   22346778999999999999999999999998763

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.4e-50  Score=431.80  Aligned_cols=245  Identities=17%  Similarity=0.199  Sum_probs=193.0

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..++||+|+||+||+|+.      .+|+.||||+++... ...+.|.+|+++|++++|||||+++|+|.+++..||||||
T Consensus        45 l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey  124 (329)
T 4aoj_A           45 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEY  124 (329)
T ss_dssp             EEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             EEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            567899999999999975      358899999997543 3467899999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC-----------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          685 LPNGNLSEKIRT-----------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       685 ~~~g~L~~~l~~-----------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      |++|+|.++++.                 ..+|.++..|+.|||+||+|||+.   +||||||||+|||+++++.+||+|
T Consensus       125 ~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~Ki~D  201 (329)
T 4aoj_A          125 MRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIGD  201 (329)
T ss_dssp             CTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECC
T ss_pred             CCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcEEEcc
Confidence            999999999964                 257899999999999999999998   999999999999999999999999


Q ss_pred             ccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccc
Q 002875          748 FGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYN  822 (872)
Q Consensus       748 fg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~  822 (872)
                      ||+++.......    ....++..|++||+..+..++.++|||||||++|||+| |+.||.+....+      .+..+..
T Consensus       202 FGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~------~~~~i~~  275 (329)
T 4aoj_A          202 FGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE------AIDCITQ  275 (329)
T ss_dssp             CC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH------HHHHHHH
T ss_pred             cccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH------HHHHHHc
Confidence            999986533221    12235556788899988899999999999999999999 788886433211      1111111


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ......++   ...+++.+++.+||+.||++||||+||+++|+.+.
T Consensus       276 g~~~~~p~---~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~  318 (329)
T 4aoj_A          276 GRELERPR---ACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALA  318 (329)
T ss_dssp             TCCCCCCT---TCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCCCCCcc---cccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHh
Confidence            11111122   22346778999999999999999999999998764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-50  Score=422.95  Aligned_cols=247  Identities=16%  Similarity=0.208  Sum_probs=192.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||+||+|+...  .||||+++..   ....+.|.+|+++|++++|||||+++|+|.+ +..|||||||++|
T Consensus        40 l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~gG  116 (307)
T 3omv_A           40 LSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGS  116 (307)
T ss_dssp             EEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSSC
T ss_pred             EeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcCCCC
Confidence            67889999999999998743  6999998743   2345778999999999999999999999865 5689999999999


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC----CCC
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD----GSF  761 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~----~~~  761 (872)
                      +|.++++.   ..+|.++..|+.|||+||+|||+.   +||||||||+|||+++++.+||+|||+|+......    ...
T Consensus       117 sL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~  193 (307)
T 3omv_A          117 SLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQ  193 (307)
T ss_dssp             BHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC------------
T ss_pred             CHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecc
Confidence            99999964   468999999999999999999998   99999999999999999999999999997654321    122


Q ss_pred             cccccccCchhhhcc---cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          762 PAKIAWTESGEFYNA---MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~---~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      ..++..|++||++..   ..++.++|||||||++|||+||+.||.+...... ...........+..   .....+...+
T Consensus       194 ~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~-~~~~~~~~~~~p~~---~~~~~~~~~~  269 (307)
T 3omv_A          194 PTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ-IIFMVGRGYASPDL---SKLYKNCPKA  269 (307)
T ss_dssp             CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHHHHTTCCCCCS---TTSCTTSCHH
T ss_pred             cccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHH-HHHHHhcCCCCCCc---ccccccchHH
Confidence            346667888888753   3588899999999999999999999975432111 00001111111111   1111233456


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.||++||||+||+++|+.++
T Consensus       270 l~~li~~cl~~dP~~RPs~~ei~~~Le~l~  299 (307)
T 3omv_A          270 MKRLVADCVKKVKEERPLFPQILSSIELLQ  299 (307)
T ss_dssp             HHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence            778999999999999999999999988664

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=7.2e-50  Score=423.87  Aligned_cols=254  Identities=20%  Similarity=0.240  Sum_probs=195.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCC----eeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH----QAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lv~ey~~~  687 (872)
                      ..+.||+|+||+||+|+. +|+.||||+++........+..|+..+.+++|||||+++|+|.+++    +.|||||||++
T Consensus         7 L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~   85 (303)
T 3hmm_A            7 LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEH   85 (303)
T ss_dssp             EEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred             EEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCC
Confidence            668899999999999987 7999999999765544445556777788999999999999998653    57999999999


Q ss_pred             CChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhC-----CCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          688 GNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHD-----CYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       688 g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~-----~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      |+|.++++. ..+|.++.+++.|+|+||+|||++     +.++||||||||+|||+|+++.+||+|||+++........ 
T Consensus        86 gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~  165 (303)
T 3hmm_A           86 GSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTI  165 (303)
T ss_dssp             CBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEE
T ss_pred             CcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCce
Confidence            999999976 468999999999999999999976     3569999999999999999999999999999765432211 


Q ss_pred             -----CcccccccCchhhhccc------CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc----------cc---
Q 002875          761 -----FPAKIAWTESGEFYNAM------KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID----------GL---  816 (872)
Q Consensus       761 -----~~~~~~~~~~~e~~~~~------~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~----------~~---  816 (872)
                           ...++.+|++||++.+.      .++.++|||||||++|||+||+.|+......+ .+..          ..   
T Consensus       166 ~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~  244 (303)
T 3hmm_A          166 DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQ-LPYYDLVPSDPSVEEMRKV  244 (303)
T ss_dssp             SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCC-CTTTTTSCSSCCHHHHHHH
T ss_pred             eeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCcccccc-ccchhcccccchHHHHHHH
Confidence                 12366778888987543      46778999999999999999988765332211 1110          00   


Q ss_pred             -ccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          817 -LGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       817 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                       ..+..++. .+......+..+.+.+++.+||+.||++||||+||++.|+.+.
T Consensus       245 ~~~~~~rp~-~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~  296 (303)
T 3hmm_A          245 VCEQKLRPN-IPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS  296 (303)
T ss_dssp             HTTSCCCCC-CCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HhcccCCCC-CCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence             01111111 1101112345667889999999999999999999999998774

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1e-49  Score=423.56  Aligned_cols=242  Identities=15%  Similarity=0.240  Sum_probs=200.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.||+|+||+||+|+. .+|+.||||+++... ...+.+.+|+++|++++|||||+++++|++++..|||||||++|+
T Consensus        78 ~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~  157 (346)
T 4fih_A           78 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA  157 (346)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEE
T ss_pred             EeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCc
Confidence            778999999999999985 689999999997543 335668899999999999999999999999999999999999999


Q ss_pred             hHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccccc
Q 002875          690 LSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIA  766 (872)
Q Consensus       690 L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~  766 (872)
                      |.+++.+ ..++.+...|+.||+.||+|||++   +||||||||+|||++.++.+||+|||+|+.......  ....++.
T Consensus       158 L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp  234 (346)
T 4fih_A          158 LTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTP  234 (346)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCc
Confidence            9999865 568889999999999999999999   999999999999999999999999999986543322  2334788


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      +|++||++....|+.++||||+||++|||+||+.||.+.....      .+..+.... ....+.......++.+++.+|
T Consensus       235 ~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~------~~~~i~~~~-~~~~~~~~~~s~~~~dli~~~  307 (346)
T 4fih_A          235 YWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK------AMKMIRDNL-PPRLKNLHKVSPSLKGFLDRL  307 (346)
T ss_dssp             GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHHSS-CCCCSCGGGSCHHHHHHHHHH
T ss_pred             CcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH------HHHHHHcCC-CCCCCccccCCHHHHHHHHHH
Confidence            8999999988889999999999999999999999997543211      111111111 111222233445678999999


Q ss_pred             ccCCCCCCCCHHHHHHH
Q 002875          847 TRSTPSDRPSMEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~  863 (872)
                      |+.||++|||++|++++
T Consensus       308 L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          308 LVRDPAQRATAAELLKH  324 (346)
T ss_dssp             SCSSTTTSCCHHHHTTC
T ss_pred             cCCChhHCcCHHHHhcC
Confidence            99999999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-47  Score=448.14  Aligned_cols=510  Identities=20%  Similarity=0.195  Sum_probs=396.3

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      ..++.|+|++|.++++.+.+|.++++|++|+|++|.+.+..++.|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            46888888888888888888888888888888888888777788888888888888888888777778888888888888


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCc-cCCccCCCCCCCCEEEccCccCcccCCccccCCCCC----cEEEeecC
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV----QYLDIAGA  172 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L----~~L~ls~n  172 (872)
                      ++|.+.+..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|.+.+..|..+..+.+|    +.|++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            8888876666578888888888888888876 357888888888888888888777777777777777    78888888


Q ss_pred             CCcccCCccCcCCCCCCEEEccCCCCcc-cCCcccccCCCCCEEeCcCCC------CcCcCCccccCCCC--CCEEEccc
Q 002875          173 NLSGSIPKELSNLTKLESLFLFRNQLAG-QVPWEFSRVTTLKSLDLSDNR------LSGPIPESFADLKN--LRLLSLMY  243 (872)
Q Consensus       173 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~--L~~L~L~~  243 (872)
                      .+.+..|..+..+ +|+.|++++|.... ..+..+..++.++.+.+....      +.......+..+.+  ++.++++.
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            8887777776655 78888888774332 123345556666555443211      12122233333333  45566666


Q ss_pred             c-cCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCC
Q 002875          244 N-EMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSL  322 (872)
Q Consensus       244 n-~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~  322 (872)
                      + .+.+..|+.+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|.  .....++.+.+.+|.+.+..
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence            6 566677788888889999999888887 577777777 8899999888886 5555  34567888888888887666


Q ss_pred             CCCCCCCCCCcEEEcCCCcccccc--CccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCC-ccc
Q 002875          323 SPSLSNCSSLVRLRLEDNSFSGEI--PLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIP-AQT  399 (872)
Q Consensus       323 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~-~~~  399 (872)
                      +.  ..+++|+.|++++|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|... +..+ ..+
T Consensus       342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~~  417 (570)
T 2z63_A          342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLK-QMSEFSVF  417 (570)
T ss_dssp             CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEE-SCTTSCTT
T ss_pred             cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccc-cccchhhh
Confidence            54  67889999999999988654  66788899999999999988865444 888899999999998543 3333 456


Q ss_pred             CCCcccccccccccccCCCCCC-CCcCCccceeeccccccC-CCCCCcccccccCcEEEccCccceeccchhccCCCCCC
Q 002875          400 WSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNLS-GTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLG  477 (872)
Q Consensus       400 ~~l~~L~~L~l~~~~l~~~~~~-~~~~~~l~~l~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  477 (872)
                      ..+++|+.|++++|.+.+..|. +..+++|+.|+++.|.+. +.+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  497 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  497 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence            7789999999999988876654 678999999999999987 67899999999999999999999999899999999999


Q ss_pred             EEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCccc-cccCC--ccccCCCCCCCCC
Q 002875          478 VLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVL-RLMGS--SAYAGNPKLCGAP  538 (872)
Q Consensus       478 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~-~~~~~--~~~~~np~~c~~~  538 (872)
                      +|++++|++++..|..|..+++|++|++++|++++.+|..... .|+..  ..+.+.+ .|..+
T Consensus       498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~  560 (570)
T 2z63_A          498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS  560 (570)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred             EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence            9999999999999999999999999999999999999877655 55422  2344555 66544

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.1e-49  Score=410.39  Aligned_cols=243  Identities=19%  Similarity=0.212  Sum_probs=191.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec----CCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN----RHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lv~e  683 (872)
                      ..++||+|+||+||+|.. .+|+.||||++....   ...+.+.+|+++|++++|||||+++++|++    ++.+|||||
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmE  109 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE  109 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEe
Confidence            456799999999999985 679999999997532   335678999999999999999999999875    356899999


Q ss_pred             ccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccccCCC
Q 002875          684 YLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       684 y~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      ||++|+|.+++++  ..++.....|+.||+.||+|||++ .++||||||||+|||++. ++.+||+|||+|+........
T Consensus       110 y~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~  188 (290)
T 3fpq_A          110 LMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK  188 (290)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBE
T ss_pred             CCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccC
Confidence            9999999999975  468888999999999999999997 123999999999999984 789999999999865443333


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...++++|++||++.+ +++.++|||||||++|||+||+.||.+......     ....+.....+  ........+++.
T Consensus       189 ~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~-----~~~~i~~~~~~--~~~~~~~~~~~~  260 (290)
T 3fpq_A          189 AVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-----IYRRVTSGVKP--ASFDKVAIPEVK  260 (290)
T ss_dssp             ESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH-----HHHHHTTTCCC--GGGGGCCCHHHH
T ss_pred             CcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHH-----HHHHHHcCCCC--CCCCccCCHHHH
Confidence            3447778899998765 689999999999999999999999975432111     01111111000  000111224577


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||+.||++|||++|++++
T Consensus       261 ~li~~~L~~dP~~R~s~~e~l~H  283 (290)
T 3fpq_A          261 EIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHccCChhHCcCHHHHhcC
Confidence            89999999999999999999875

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=6.2e-49  Score=418.30  Aligned_cols=242  Identities=16%  Similarity=0.186  Sum_probs=192.2

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      |...+.||+|+||+||+|+. .+|+.||||++....   ...+.+.+|+++|++++|||||++++++++++..|||||||
T Consensus        26 Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~  105 (350)
T 4b9d_A           26 YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYC  105 (350)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             eEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            33889999999999999985 689999999997542   34567889999999999999999999999999999999999


Q ss_pred             CCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--
Q 002875          686 PNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--  759 (872)
Q Consensus       686 ~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--  759 (872)
                      +||+|.++|...    .++.+...|+.||+.||+|||++   +||||||||+|||+++++.+||+|||+|+.......  
T Consensus       106 ~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~  182 (350)
T 4b9d_A          106 EGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELA  182 (350)
T ss_dssp             TTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCCcccc
Confidence            999999999642    36778889999999999999999   999999999999999999999999999986543211  


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ....++.+|++||++.+..++.++||||+||++|||+||+.||.+....      ..+..+......+.+.   ....++
T Consensus       183 ~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~------~~~~~i~~~~~~~~~~---~~s~~~  253 (350)
T 4b9d_A          183 RACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK------NLVLKIISGSFPPVSL---HYSYDL  253 (350)
T ss_dssp             HHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHHHTCCCCCCT---TSCHHH
T ss_pred             cccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH------HHHHHHHcCCCCCCCc---cCCHHH
Confidence            1223677899999998888999999999999999999999999754321      1111122111111111   223467


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||+.||++|||++|++++
T Consensus       254 ~~li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          254 RSLVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHccCChhHCcCHHHHhcC
Confidence            789999999999999999999864

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=9.3e-49  Score=415.12  Aligned_cols=241  Identities=17%  Similarity=0.145  Sum_probs=194.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.||+|+||+||+|+. .+|+.||||+++....    ..+|+.++++++|||||++++++.+++..|||||||+||+|
T Consensus        62 ~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L  137 (336)
T 4g3f_A           62 HQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSL  137 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBH
T ss_pred             eCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcH
Confidence            667899999999999985 6799999999975432    24689999999999999999999999999999999999999


Q ss_pred             HHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccccccC-------CC
Q 002875          691 SEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQLAD-------GS  760 (872)
Q Consensus       691 ~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~~~-------~~  760 (872)
                      .+++++  ..++.+...|+.||+.||+|||++   +||||||||+|||++.++ .+||+|||+|+......       ..
T Consensus       138 ~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~  214 (336)
T 4g3f_A          138 GQLIKQMGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGD  214 (336)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------C
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCC
Confidence            999975  468889999999999999999999   999999999999999987 69999999998654321       11


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...++++|++||++.+..++.++||||+||++|||+||+.||.+......      +..+....+. .....+.....+.
T Consensus       215 ~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~------~~~i~~~~~~-~~~~~~~~s~~~~  287 (336)
T 4g3f_A          215 YIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL------CLKIASEPPP-IREIPPSCAPLTA  287 (336)
T ss_dssp             CCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC------HHHHHHSCCG-GGGSCTTSCHHHH
T ss_pred             ccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH------HHHHHcCCCC-chhcCccCCHHHH
Confidence            22467789999999888899999999999999999999999975432211      1111111100 0011122335677


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      +++.+||+.||++|||++|++++|..
T Consensus       288 ~li~~~L~~dP~~R~sa~el~~~l~~  313 (336)
T 4g3f_A          288 QAIQEGLRKEPVHRASAMELRRKVGK  313 (336)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHccCCHhHCcCHHHHHHHHHH
Confidence            89999999999999999999988754

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.5e-48  Score=425.02  Aligned_cols=243  Identities=15%  Similarity=0.239  Sum_probs=200.2

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ...+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|+.+|++++|||||+++++|.+++..|||||||+||
T Consensus       154 ~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG  233 (423)
T 4fie_A          154 DNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  233 (423)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTE
T ss_pred             EeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCC
Confidence            3888999999999999985 689999999997543 34567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          689 NLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       689 ~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      +|.++++. ..++.+...|+.||+.||+|||++   +||||||||+||||+.++.+||+|||+|+.......  ....++
T Consensus       234 ~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT  310 (423)
T 4fie_A          234 ALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGT  310 (423)
T ss_dssp             EHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEEC
T ss_pred             cHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccC
Confidence            99999975 568888999999999999999999   999999999999999999999999999986543322  233478


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .+|++||++....|+.++||||+||++|||+||+.||.+.....      .+..+.... ............++.+++.+
T Consensus       311 p~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~------~~~~i~~~~-~~~~~~~~~~s~~~~dli~~  383 (423)
T 4fie_A          311 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK------AMKMIRDNL-PPRLKNLHKVSPSLKGFLDR  383 (423)
T ss_dssp             TTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHHSC-CCCCSCTTSSCHHHHHHHHH
T ss_pred             cCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH------HHHHHHcCC-CCCCcccccCCHHHHHHHHH
Confidence            88999999988899999999999999999999999997543211      111111110 11111112234567889999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.||++|||++|++++
T Consensus       384 ~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          384 LLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             HSCSSTTTSCCHHHHTTC
T ss_pred             HcCCChhHCcCHHHHhcC
Confidence            999999999999999875

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.6e-48  Score=416.40  Aligned_cols=245  Identities=21%  Similarity=0.215  Sum_probs=194.2

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCC-CCceeEEEEEecC-CeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRH-KNLIRLLGFCYNR-HQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~-~~~~lv  681 (872)
                      ..+.||+|+||+||+|..      .+++.||||+++....  ..+.+.+|+++|++++| ||||+++|+|.++ +..|||
T Consensus        68 l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV  147 (353)
T 4ase_A           68 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  147 (353)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEE
T ss_pred             EeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEE
Confidence            778899999999999974      3457899999976432  35678999999999965 8999999999764 578999


Q ss_pred             EcccCCCChHHHhhC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCe
Q 002875          682 YDYLPNGNLSEKIRT------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP  743 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~  743 (872)
                      ||||++|+|.++|+.                  ..+|.++..|+.|||+||+|||++   +||||||||+|||+++++.+
T Consensus       148 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~v  224 (353)
T 4ase_A          148 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVV  224 (353)
T ss_dssp             EECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred             EEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccceeeCCCCCE
Confidence            999999999999964                  247889999999999999999999   99999999999999999999


Q ss_pred             eEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccc
Q 002875          744 HLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLG  818 (872)
Q Consensus       744 ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~  818 (872)
                      ||+|||+|+........    ...++..|++||++....++.++|||||||++|||+| |+.||.+......  ....+ 
T Consensus       225 Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~--~~~~i-  301 (353)
T 4ase_A          225 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE--FCRRL-  301 (353)
T ss_dssp             EECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH--HHHHH-
T ss_pred             EECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH--HHHHH-
Confidence            99999999865432221    1224556788898888899999999999999999999 7888764332111  11111 


Q ss_pred             ccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          819 EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                        ........++.   ...++.+++.+||+.||++||||+|++++|+.+
T Consensus       302 --~~g~~~~~p~~---~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l  345 (353)
T 4ase_A          302 --KEGTRMRAPDY---TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  345 (353)
T ss_dssp             --HHTCCCCCCTT---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             --HcCCCCCCCcc---CCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence              11111111221   234677899999999999999999999999875

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1.3e-47  Score=395.97  Aligned_cols=242  Identities=17%  Similarity=0.161  Sum_probs=185.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..|.  ..+.||+|+||+||+|.. .+|+.||||+++...    ...+.+.+|+++|++++|||||++++++++++..|+
T Consensus        13 g~Y~--i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~i   90 (275)
T 3hyh_A           13 GNYQ--IVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIM   90 (275)
T ss_dssp             -CCE--EEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             eCeE--EEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            3455  889999999999999985 679999999997532    235678899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          681 LYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ||||| +|+|.+++.+  ..+..+...++.|++.||+|||++   +|+||||||+|||+++++.+||+|||+|+......
T Consensus        91 vmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~  166 (275)
T 3hyh_A           91 VIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN  166 (275)
T ss_dssp             EEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC-------
T ss_pred             EEeCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCCC
Confidence            99999 6899999865  467888899999999999999999   99999999999999999999999999997654332


Q ss_pred             C-CCcccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          759 G-SFPAKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       759 ~-~~~~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      . ....++++|++||++.+..+ +.++||||+||++|||+||+.||.+....      .....+.... ...+.   ...
T Consensus       167 ~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~------~~~~~i~~~~-~~~p~---~~s  236 (275)
T 3hyh_A          167 FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP------VLFKNISNGV-YTLPK---FLS  236 (275)
T ss_dssp             --------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHTC-CCCCT---TSC
T ss_pred             ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHHcCC-CCCCC---CCC
Confidence            2 23347788999999877665 57899999999999999999999753211      1111111111 11111   123


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .++.+++.+||+.||++|||++|++++
T Consensus       237 ~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          237 PGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            467789999999999999999999875

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3.4e-48  Score=405.57  Aligned_cols=237  Identities=18%  Similarity=0.156  Sum_probs=196.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||+||+|+. .+|+.||||++.+..    ...+.+.+|+++|++++|||||++++++++++..|||||||+
T Consensus        36 i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~  115 (311)
T 4aw0_A           36 FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAK  115 (311)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCC
Confidence            889999999999999985 789999999997532    235678999999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC----CC
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD----GS  760 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~----~~  760 (872)
                      ||+|.+++++  ..+..+...|+.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+......    ..
T Consensus       116 gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~  192 (311)
T 4aw0_A          116 NGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARAN  192 (311)
T ss_dssp             TEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBC
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCccccc
Confidence            9999999975  467888899999999999999999   99999999999999999999999999998654322    12


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...|+++|++||++.+..++.++||||+||++|||+||+.||.+....      ..+..+.... ...++   ....++.
T Consensus       193 ~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~------~~~~~i~~~~-~~~p~---~~s~~~~  262 (311)
T 4aw0_A          193 SFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG------LIFAKIIKLE-YDFPE---KFFPKAR  262 (311)
T ss_dssp             CCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHTC-CCCCT---TCCHHHH
T ss_pred             CcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHcCC-CCCCc---ccCHHHH
Confidence            234778899999998888999999999999999999999999754321      1111111111 11111   1234677


Q ss_pred             HHHHHcccCCCCCCCCHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEAL  861 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~  861 (872)
                      +++.+||+.||++|||++|+.
T Consensus       263 dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          263 DLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             HHHHHHSCSSGGGSTTSGGGT
T ss_pred             HHHHHHccCCHhHCcChHHHc
Confidence            899999999999999999863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.7e-46  Score=433.15  Aligned_cols=475  Identities=19%  Similarity=0.181  Sum_probs=364.0

Q ss_pred             ccCCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCcc
Q 002875            6 GALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAE   85 (872)
Q Consensus         6 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~   85 (872)
                      +..+..+.+  ++.|++|+|++|+++++.+.+|.++++|++|+|++|.+.+..|+.|.++++|++|++++|.+++..+..
T Consensus        42 ~~~~~~~~~--l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  119 (570)
T 2z63_A           42 HLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP  119 (570)
T ss_dssp             EECTTTTTT--CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS
T ss_pred             ccChhHhhC--CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcc
Confidence            333445566  889999999999999999999999999999999999999988899999999999999999999776668


Q ss_pred             ccCCCCCCEEEccCCcccc-cCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCC----CEEEccCccCcccCCccccC
Q 002875           86 ISQLEHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV----THMEIGYNFYQGNIPWQLGN  160 (872)
Q Consensus        86 ~~~L~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L----~~L~l~~n~~~~~~p~~~~~  160 (872)
                      |+++++|++|+|++|.+.+ .+|..|+++++|++|++++|.+++..+..++.+++|    ..+++++|.+.+..|..+..
T Consensus       120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~  199 (570)
T 2z63_A          120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  199 (570)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred             ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence            9999999999999999987 469999999999999999999998888889888888    89999999998887777766


Q ss_pred             CCCCcEEEeecCCCc-ccCCccCcCCCCCCEEEccCCCC------cccCCcccccCCC--CCEEeCcCC-CCcCcCCccc
Q 002875          161 MSEVQYLDIAGANLS-GSIPKELSNLTKLESLFLFRNQL------AGQVPWEFSRVTT--LKSLDLSDN-RLSGPIPESF  230 (872)
Q Consensus       161 l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~--L~~L~L~~N-~l~~~~~~~~  230 (872)
                      . +|+.|++++|... ..++..+..+++++.+.+....+      .......+..+.+  ++.++++.+ .+.+..+..+
T Consensus       200 ~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~  278 (570)
T 2z63_A          200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF  278 (570)
T ss_dssp             C-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT
T ss_pred             C-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh
Confidence            5 7999999987543 23344555666666555432211      1122222333332  344555555 4555566666


Q ss_pred             cCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeE
Q 002875          231 ADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFK  310 (872)
Q Consensus       231 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~  310 (872)
                      ..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  .....|+.
T Consensus       279 ~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~  351 (570)
T 2z63_A          279 NCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEF  351 (570)
T ss_dssp             GGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred             cCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCE
Confidence            66677777777777666 355556666 6777777777666 3443  3556667777777666554443  34556677


Q ss_pred             EEcCCCcCCCCC--CCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCC-chhhhhcccccccccC
Q 002875          311 LILFSNNFTGSL--SPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIP-TDINQASKLEYFNVSN  387 (872)
Q Consensus       311 l~l~~n~~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ls~  387 (872)
                      +++++|.+.+..  +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  430 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  430 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence            777777665443  44566778888888888888765554 7788888888888888876655 4577788888888888


Q ss_pred             CCCCCCcCCcccCCCcccccccccccccC-CCCC-CCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceec
Q 002875          388 NPKLGGMIPAQTWSLPSLQNFSASACNIT-GNLP-PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGS  465 (872)
Q Consensus       388 n~~l~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~-~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  465 (872)
                      |. +.+..|..+..+++|+.|++++|.++ +.+| .+..+++|+.|+++.|.+.+..|..+.++++|++|++++|++++.
T Consensus       431 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          431 TH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             SC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             Cc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            83 44455666777888888888888876 3444 467888999999999999988899999999999999999999999


Q ss_pred             cchhccCCCCCCEEECCCCccccccCc
Q 002875          466 IPEVLARLPVLGVLDLSHNSLSGQIPA  492 (872)
Q Consensus       466 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~  492 (872)
                      ++..|..+++|+.|++++|.+++..|.
T Consensus       510 ~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          510 PDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CHHHhhcccCCcEEEecCCcccCCCcc
Confidence            899999999999999999999987664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.8e-46  Score=432.74  Aligned_cols=482  Identities=18%  Similarity=0.170  Sum_probs=354.9

Q ss_pred             EEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCc
Q 002875           22 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSY  101 (872)
Q Consensus        22 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~  101 (872)
                      +.|.++|.++.+ |..+.  ++|++|+|++|.+.+..|.+|..+++|++|++++|.+.+..|.+|.++++|++|+|++|.
T Consensus         9 ~c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A            9 VCDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EEECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             eEECCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            356777777644 44443  677777777777777777777777777777777777777666777777777777777777


Q ss_pred             ccccCCcccCCCCCCcEeeCccCcCCc-cCCccCCCCCCCCEEEccCccCcccCC-ccccCCCCCcEEEeecCCCcccCC
Q 002875          102 FSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTVTHMEIGYNFYQGNIP-WQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       102 ~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      +.+..|..|+++++|++|++++|.+++ ..|..++.+++|++|++++|...+.+| ..+.++++|++|++++|.+.+..|
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            776666667777777777777777765 345667777777777777776444443 567777888888888888887777


Q ss_pred             ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcC--C-ccccCCCCCCEEEcccccCCCCCC----c
Q 002875          180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI--P-ESFADLKNLRLLSLMYNEMSGTVP----E  252 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~p----~  252 (872)
                      ..+..+++|++|+++.|.+....+..+..+++|++|++++|++++..  + .....+++|+.|++++|.+.+..+    .
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK  245 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred             hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence            78888888888888877776443333456778888888888877532  1 223456778888888887765433    2


Q ss_pred             cccCCCCcceeecccccccccC------CccCCCCCCCcEEecCCCeeeecC-----CCCCCCCCceeEEEcCCCcCCCC
Q 002875          253 SLVQLPSLEILFIWNNYFSGSL------PENLGRNSKLRWVDVSTNNFNGSI-----PPDICSGGVLFKLILFSNNFTGS  321 (872)
Q Consensus       253 ~l~~l~~L~~L~l~~n~l~~~~------p~~~~~~~~L~~L~ls~n~l~~~~-----p~~~~~~~~l~~l~l~~n~~~~~  321 (872)
                      .+..+++|+.+++++|.+.+..      ...+..+.+++.++++++.+....     +..+.....++.+.+.+|.+. .
T Consensus       246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~  324 (549)
T 2z81_A          246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L  324 (549)
T ss_dssp             GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-C
T ss_pred             HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-c
Confidence            3455677888888888776531      123455667788887777654211     000111246888888888876 4


Q ss_pred             CCCCC-CCCCCCcEEEcCCCccccccC---ccCCCCCCCcEEEcCCCcCCCCCC--chhhhhcccccccccCCCCCCCcC
Q 002875          322 LSPSL-SNCSSLVRLRLEDNSFSGEIP---LKFSQLPDINYIDLSRNGFTGGIP--TDINQASKLEYFNVSNNPKLGGMI  395 (872)
Q Consensus       322 ~~~~~-~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~ls~n~~l~~~~  395 (872)
                      +|..+ ..+++|+.|++++|++++..|   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|.. . .+
T Consensus       325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~-~l  402 (549)
T 2z81_A          325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-H-PM  402 (549)
T ss_dssp             CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-C-CC
T ss_pred             CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-c-cC
Confidence            45444 578999999999999988764   347889999999999999986432  4577889999999999954 3 56


Q ss_pred             CcccCCCcccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCC
Q 002875          396 PAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPV  475 (872)
Q Consensus       396 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  475 (872)
                      |..+..+++|+.|++++|.++......  .++|+.|++++|.+++.+    .++++|++|+|++|+++. +|. ...+++
T Consensus       403 p~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~  474 (549)
T 2z81_A          403 PDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPV  474 (549)
T ss_dssp             CSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTT
T ss_pred             ChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC-cccCcc
Confidence            777788899999999999987432221  258999999999998753    478999999999999984 555 457899


Q ss_pred             CCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCC
Q 002875          476 LGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSG  517 (872)
Q Consensus       476 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~  517 (872)
                      |++|+|++|++++..|..|..+++|++|++++|++++.+|..
T Consensus       475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             CCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             CCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            999999999999999999999999999999999999988743

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.1e-47  Score=402.05  Aligned_cols=240  Identities=16%  Similarity=0.112  Sum_probs=188.6

Q ss_pred             chhhhccCCCCCceeeeec----CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          611 TECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      +..+.||+|+||+||+|+.    .+|+.||||+++...   .....+.+|+++|++++|||||++++++++++..|+|||
T Consensus        27 ~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmE  106 (304)
T 3ubd_A           27 ELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILD  106 (304)
T ss_dssp             EEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEEEEC
T ss_pred             EEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEE
Confidence            3889999999999999974    367899999997532   234467889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--C
Q 002875          684 YLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--G  759 (872)
Q Consensus       684 y~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~  759 (872)
                      ||+||+|.+++.+  ..++.+...++.|++.||+|||++   +|+||||||+|||+++++.+||+|||+|+......  .
T Consensus       107 y~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~  183 (304)
T 3ubd_A          107 FLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA  183 (304)
T ss_dssp             CCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCC
T ss_pred             cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccCCCccc
Confidence            9999999999976  457888899999999999999999   99999999999999999999999999997643322  2


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ....++++|++||.+.+..++.++||||+||++|||+||+.||.+.....      .+..+.... ...++   ....++
T Consensus       184 ~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~  253 (304)
T 3ubd_A          184 YSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE------TMTMILKAK-LGMPQ---FLSPEA  253 (304)
T ss_dssp             CSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TSCHHH
T ss_pred             cccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH------HHHHHHcCC-CCCCC---cCCHHH
Confidence            23347788999999988889999999999999999999999997543211      111111111 11111   123467


Q ss_pred             HHHHHHcccCCCCCCCC-----HHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      .+++.+||+.||++|||     ++|++++
T Consensus       254 ~~li~~~L~~dP~~R~ta~~~~~~eil~H  282 (304)
T 3ubd_A          254 QSLLRMLFKRNPANRLGAGPDGVEEIKRH  282 (304)
T ss_dssp             HHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred             HHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence            78999999999999998     5787754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-46  Score=443.08  Aligned_cols=449  Identities=17%  Similarity=0.233  Sum_probs=230.3

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCc------c------cCCccccCCCCCcEEECcCCcCccccCcc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFS------G------HFPGGIQSLRNLLVLDAFSNSFSGSVPAE   85 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~------~------~~~~~~~~l~~L~~LdL~~n~l~~~~p~~   85 (872)
                      ..++.|+|++|.+++.+|.+|.+|++|++|+|++|.+.      +      .+|...  +..|+ +++++|.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            36888888888888888888888888888888888652      1      122211  23344 455555444444443


Q ss_pred             ccCC-------------------CCCCEEEcc--CCcccccCCcccCCCCCCcEeeCccCcCCcc-CCccCCCCCCCCEE
Q 002875           86 ISQL-------------------EHLKVLNLA--GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQ-IPAELGMLKTVTHM  143 (872)
Q Consensus        86 ~~~L-------------------~~L~~L~L~--~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~L~~L~~L  143 (872)
                      +..+                   ..++.+.+.  +|.+++ +|.+|+++++|++|+|++|.+++. ++..+..       
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-------  229 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-------  229 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-------
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc-------
Confidence            3310                   111111111  234444 444444444444444444444432 0000000       


Q ss_pred             EccCccCcccCCcccc--CCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCC-Ccc-cCCcccccC------CCCC
Q 002875          144 EIGYNFYQGNIPWQLG--NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ-LAG-QVPWEFSRV------TTLK  213 (872)
Q Consensus       144 ~l~~n~~~~~~p~~~~--~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~  213 (872)
                       .+.+...+.+|..++  ++++|++|++++|.+.+.+|..++.+++|++|++++|+ +++ .+|..+..+      ++|+
T Consensus       230 -~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~  308 (636)
T 4eco_A          230 -ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ  308 (636)
T ss_dssp             -TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred             -cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence             000000001444444  44444444444444444444444444444444444444 444 344444333      4455


Q ss_pred             EEeCcCCCCcCcCCc--cccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCC-CcEEecC
Q 002875          214 SLDLSDNRLSGPIPE--SFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSK-LRWVDVS  290 (872)
Q Consensus       214 ~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~-L~~L~ls  290 (872)
                      +|++++|+++ .+|.  .++.+++|+.|++++|++.+.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|+++
T Consensus       309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA  385 (636)
T ss_dssp             EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECC
T ss_pred             EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEcc
Confidence            5555555544 3444  44455555555555555544444 4444455555555555444 44444444444 5555555


Q ss_pred             CCeeeecCCCCCCCCC--ceeEEEcCCCcCCCCCCCCCC-------CCCCCcEEEcCCCccccccCccCCCCCCCcEEEc
Q 002875          291 TNNFNGSIPPDICSGG--VLFKLILFSNNFTGSLSPSLS-------NCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDL  361 (872)
Q Consensus       291 ~n~l~~~~p~~~~~~~--~l~~l~l~~n~~~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  361 (872)
                      +|.+. .+|..+....  .|+.+++++|.+.+..|..+.       .+++|+.|++++|+++...+..+..+++|++|++
T Consensus       386 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          386 HNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL  464 (636)
T ss_dssp             SSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred             CCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence            55544 4444333322  455555555555555444444       4556666666666666433334445666666666


Q ss_pred             CCCcCCCCCCch-hhhh-------cccccccccCCCCCCCcCCcccC--CCcccccccccccccCCCCCCCCcCCcccee
Q 002875          362 SRNGFTGGIPTD-INQA-------SKLEYFNVSNNPKLGGMIPAQTW--SLPSLQNFSASACNITGNLPPFKSCKSISVI  431 (872)
Q Consensus       362 s~N~l~~~~~~~-~~~l-------~~L~~L~ls~n~~l~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l  431 (872)
                      ++|.++ .+|.. +...       ++|++|++++|...  .+|..+.  .+++|+.|++++|.++               
T Consensus       465 s~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~---------------  526 (636)
T 4eco_A          465 MGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFS---------------  526 (636)
T ss_dssp             CSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCS---------------
T ss_pred             CCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCC---------------
Confidence            666666 33332 2222       26666666666332  3454443  4555555555444443               


Q ss_pred             eccccccCCCCCCcccccccCcEEEc------cCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEEC
Q 002875          432 ESHMNNLSGTIPESVSNCVELERIDL------ANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNV  505 (872)
Q Consensus       432 ~l~~n~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  505 (872)
                              + +|..+.++++|++|+|      ++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|++|++
T Consensus       527 --------~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L  594 (636)
T 4eco_A          527 --------K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI  594 (636)
T ss_dssp             --------S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC
T ss_pred             --------C-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC
Confidence                    2 4445555666666666      45666777777777777777777777777 45555544  67777777


Q ss_pred             cCCeeee
Q 002875          506 SFNDISG  512 (872)
Q Consensus       506 s~N~l~~  512 (872)
                      ++|++..
T Consensus       595 s~N~l~~  601 (636)
T 4eco_A          595 KDNPNIS  601 (636)
T ss_dssp             CSCTTCE
T ss_pred             cCCCCcc
Confidence            7777764

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=3.7e-46  Score=392.93  Aligned_cols=241  Identities=16%  Similarity=0.202  Sum_probs=184.4

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCC-------
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-------  676 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-------  676 (872)
                      .|.  ..+.||+|+||+||+|+. .+|+.||||+++...  ...+.+.+|+++|++++|||||++++++.+.+       
T Consensus         6 dy~--~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            6 DFE--PIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HEE--EEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             hCE--EeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            355  889999999999999985 689999999997543  23567889999999999999999999987543       


Q ss_pred             -----eeEEEEcccCCCChHHHhhCCC-----CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEc
Q 002875          677 -----QAYLLYDYLPNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA  746 (872)
Q Consensus       677 -----~~~lv~ey~~~g~L~~~l~~~~-----~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~  746 (872)
                           ..|+|||||++|+|.+++....     ++.....|+.|+++||+|||++   +|+||||||+|||++.++.+||+
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~  160 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVG  160 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEc
Confidence                 3699999999999999998643     4556778999999999999999   99999999999999999999999


Q ss_pred             cccccccccccCC--------------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc
Q 002875          747 EFGFKYLTQLADG--------------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP  812 (872)
Q Consensus       747 dfg~~~~~~~~~~--------------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~  812 (872)
                      |||+|+.......              ....|+++|++||...+..++.++||||+||++|||++   ||.....     
T Consensus       161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~-----  232 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQME-----  232 (299)
T ss_dssp             CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHH-----
T ss_pred             cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccH-----
Confidence            9999976543211              11236778899999988899999999999999999997   6542110     


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.....   ...++...+..+...+++.+||+.||++|||++|++++
T Consensus       233 ~~~~~~~~~~---~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  280 (299)
T 4g31_A          233 RVRTLTDVRN---LKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN  280 (299)
T ss_dssp             HHHHHHHHHT---TCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHhc---CCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            0001111111   11122334444567789999999999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.2e-45  Score=437.02  Aligned_cols=447  Identities=19%  Similarity=0.216  Sum_probs=242.3

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEEC-cCCcCcccCCcccc---------------------------------
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDI-SRNNFSGHFPGGIQ---------------------------------   63 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L-s~N~i~~~~~~~~~---------------------------------   63 (872)
                      ..++.|+|++|.+++.+|.+|.+|++|++|+| ++|.+.+..|-...                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46899999999999999999999999999999 88887665321100                                 


Q ss_pred             ------------------CCCCCcEEECc--CCcCccccCccccCCCCCCEEEccCCcccc-----------------cC
Q 002875           64 ------------------SLRNLLVLDAF--SNSFSGSVPAEISQLEHLKVLNLAGSYFSG-----------------PI  106 (872)
Q Consensus        64 ------------------~l~~L~~LdL~--~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~-----------------~~  106 (872)
                                        ....++.+.+.  .|.+++ +|..|+++++|++|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                              00111111111  244444 45555555555555555555554                 14


Q ss_pred             CcccC--CCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCcc-Ccc-cCCccccCCCCCcEEEeecCCCcccCCccC
Q 002875          107 PSQFG--SFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNF-YQG-NIPWQLGNMSEVQYLDIAGANLSGSIPKEL  182 (872)
Q Consensus       107 p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~-~~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l  182 (872)
                      |..++  ++++|++|+|++|.+.+.+|..++.+++|+.|++++|. +.+ .+|..+++++                 ..+
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------------~~~  544 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------------DDE  544 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------HCT
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh-----------------hcc
Confidence            44444  44445555554444444444444444444444444443 443 3443333222                 011


Q ss_pred             cCCCCCCEEEccCCCCcccCCc--ccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCC-
Q 002875          183 SNLTKLESLFLFRNQLAGQVPW--EFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS-  259 (872)
Q Consensus       183 ~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-  259 (872)
                      ..+++|+.|++++|.+. .+|.  .|..+++|+.|+|++|+++ .+| .|+.+++|+.|++++|++. .+|..+..+++ 
T Consensus       545 ~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~  620 (876)
T 4ecn_A          545 DTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ  620 (876)
T ss_dssp             TTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTT
T ss_pred             cccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhcccc
Confidence            11225555555555555 3444  4555555555555555554 344 4555555555555555554 44444555555 


Q ss_pred             cceeecccccccccCCccCCCCCC--CcEEecCCCeeeecCCCCC-----CCCCceeEEEcCCCcCCCCCCCCCCCCCCC
Q 002875          260 LEILFIWNNYFSGSLPENLGRNSK--LRWVDVSTNNFNGSIPPDI-----CSGGVLFKLILFSNNFTGSLSPSLSNCSSL  332 (872)
Q Consensus       260 L~~L~l~~n~l~~~~p~~~~~~~~--L~~L~ls~n~l~~~~p~~~-----~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L  332 (872)
                      |+.|++++|.+. .+|..+.....  |+.|++++|.+.+.+|...     +....|+.|++++|.+....+..+..+++|
T Consensus       621 L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L  699 (876)
T 4ecn_A          621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI  699 (876)
T ss_dssp             CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred             CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCC
Confidence            555555555554 34444443332  5555555555544333211     122356666666666653222223466777


Q ss_pred             cEEEcCCCccccccCccCCCC-------CCCcEEEcCCCcCCCCCCchhh--hhcccccccccCCCCCCCcCCcccCCCc
Q 002875          333 VRLRLEDNSFSGEIPLKFSQL-------PDINYIDLSRNGFTGGIPTDIN--QASKLEYFNVSNNPKLGGMIPAQTWSLP  403 (872)
Q Consensus       333 ~~L~L~~N~l~~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ls~n~~l~~~~~~~~~~l~  403 (872)
                      +.|++++|+++...+..+...       ++|+.|+|++|+++ .+|..+.  .+++|+.|++++|... + +|..+..++
T Consensus       700 ~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~-~-lp~~l~~L~  776 (876)
T 4ecn_A          700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-S-FPTQPLNSS  776 (876)
T ss_dssp             SEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS-S-CCCGGGGCT
T ss_pred             CEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC-c-cchhhhcCC
Confidence            777777777763322233222       26777777777777 5666655  6667777777776332 2 455555555


Q ss_pred             ccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCC
Q 002875          404 SLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSH  483 (872)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  483 (872)
                      +|+.|++++|.                 +++.|.+.+.+|..+.++++|++|+|++|++ +.+|..+.  ++|+.|||++
T Consensus       777 ~L~~L~Ls~N~-----------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~  836 (876)
T 4ecn_A          777 QLKAFGIRHQR-----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIAD  836 (876)
T ss_dssp             TCCEEECCCCB-----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCS
T ss_pred             CCCEEECCCCC-----------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCC
Confidence            55555555543                 2344566666777777777777777777777 45555543  5677777777


Q ss_pred             CccccccCccccCCCCCcEEECcCCee
Q 002875          484 NSLSGQIPAKFGSCSSLTVLNVSFNDI  510 (872)
Q Consensus       484 N~l~~~~~~~~~~l~~L~~L~ls~N~l  510 (872)
                      |++....+..|.....+..+.+.+|++
T Consensus       837 N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          837 NPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             CTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCCCccChHHccccccchheeecCCCc
Confidence            777666555554443444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-45  Score=424.32  Aligned_cols=457  Identities=18%  Similarity=0.171  Sum_probs=340.7

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS  100 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n  100 (872)
                      ++||+++|.++. +|..+.  ++|++|+|++|.+.+..|+.|..+++|++|++++|.+++..|..|.++++|++|+|++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            579999999985 566666  89999999999999888889999999999999999999888899999999999999999


Q ss_pred             cccccCCcccCCCCCCcEeeCccCcCCc-cCCccCCCCCCCCEEEccCccCcccCCccccCCCCC--cEEEeecCCC--c
Q 002875          101 YFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV--QYLDIAGANL--S  175 (872)
Q Consensus       101 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L--~~L~ls~n~l--~  175 (872)
                      .+.. +|..  .+++|++|+|++|.+++ .+|..++.+++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .
T Consensus        80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            9984 5555  89999999999999987 467889999999999999988765   345667777  9999999988  7


Q ss_pred             ccCCccCcCCC-CCCEEEccCCCCcccCC-cccccCCCCCEEeCcCCC-------CcCcCCccccCCCCCCEEEcccccC
Q 002875          176 GSIPKELSNLT-KLESLFLFRNQLAGQVP-WEFSRVTTLKSLDLSDNR-------LSGPIPESFADLKNLRLLSLMYNEM  246 (872)
Q Consensus       176 ~~~p~~l~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~n~l  246 (872)
                      +..|..+..++ +...++++.|.+.+..+ ..+..+++|+.|++++|.       +.+.+| .++.+++|+.|+++.|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            77787777665 23356777787766444 356778888888888886       554444 677888888888888877


Q ss_pred             CCCCCcccc---CCCCcceeecccccccccCCccC-----CCCCCCcEEecCCCeeeecCCC-CCC---CCCceeEEEcC
Q 002875          247 SGTVPESLV---QLPSLEILFIWNNYFSGSLPENL-----GRNSKLRWVDVSTNNFNGSIPP-DIC---SGGVLFKLILF  314 (872)
Q Consensus       247 ~~~~p~~l~---~l~~L~~L~l~~n~l~~~~p~~~-----~~~~~L~~L~ls~n~l~~~~p~-~~~---~~~~l~~l~l~  314 (872)
                      .+..+..+.   ..++|++|++++|.+.|.+|..+     ..++.|+.+++++|.+  .+|. .++   ....++.+.+.
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence            653222211   23578888888888887788777     7777888888887777  4442 111   11346677777


Q ss_pred             CCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCC--CCCchhhhhcccccccccCCCCCC
Q 002875          315 SNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG--GIPTDINQASKLEYFNVSNNPKLG  392 (872)
Q Consensus       315 ~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~ls~n~~l~  392 (872)
                      +|.+....  .+..+++|++|++++|++++..|..+..+++|++|++++|++.+  .+|..+..+++|++|++++|    
T Consensus       311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N----  384 (520)
T 2z7x_B          311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN----  384 (520)
T ss_dssp             SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS----
T ss_pred             CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC----
Confidence            77665432  12466777777777777777667777777777777777777764  33445556666666666666    


Q ss_pred             CcCCcccCCCcccccccccccccCCCCC--CCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhc
Q 002875          393 GMIPAQTWSLPSLQNFSASACNITGNLP--PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVL  470 (872)
Q Consensus       393 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~  470 (872)
                                           .+++.+|  .+..+++|+.++++.|.+++..|..+.  ++|++|++++|+++ .+|..+
T Consensus       385 ---------------------~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~  440 (520)
T 2z7x_B          385 ---------------------SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV  440 (520)
T ss_dssp             ---------------------CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred             ---------------------cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence                                 3333222  134455666666666666655555443  78999999999999 566666


Q ss_pred             cCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCcc
Q 002875          471 ARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKV  519 (872)
Q Consensus       471 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~  519 (872)
                      ..+++|++|++++|++++..+..|..+++|++|++++|++++.++..+.
T Consensus       441 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            6999999999999999966555699999999999999999987775444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.8e-45  Score=430.46  Aligned_cols=461  Identities=19%  Similarity=0.263  Sum_probs=352.7

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCc------c------ccCccccCCCCCCEEEccCCcccccCCcc
Q 002875           42 TSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS------G------SVPAEISQLEHLKVLNLAGSYFSGPIPSQ  109 (872)
Q Consensus        42 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~------~------~~p~~~~~L~~L~~L~L~~n~~~~~~p~~  109 (872)
                      .+++.|+|++|.+.|.+|.+|+.|++|++|||++|.+.      +      .+|...  +..|+ +++++|.+.+..|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            36777777777777777777777777777777777541      1      222222  34455 566666665555554


Q ss_pred             cCC-CCCCcEeeCccCcCCccCCccCCCCCCCCEEEcc--CccCcccCCccccCCCCCcEEEeecCCCccc---------
Q 002875          110 FGS-FKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIG--YNFYQGNIPWQLGNMSEVQYLDIAGANLSGS---------  177 (872)
Q Consensus       110 ~~~-l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~--~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~---------  177 (872)
                      +.. +..+..+++....+..      .....++.+.++  .|.+.+ +|..++++++|++|++++|.+++.         
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            442 2223333333222211      111222222332  466777 888999999999999999999986         


Q ss_pred             --------CCccCc--CCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCC-CcC-cCCccccCC------CCCCEE
Q 002875          178 --------IPKELS--NLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNR-LSG-PIPESFADL------KNLRLL  239 (872)
Q Consensus       178 --------~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~L  239 (872)
                              +|..++  .+++|++|++++|.+.+.+|..|.++++|++|++++|+ +++ .+|..++.+      ++|+.|
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence                    899998  99999999999999999999999999999999999998 887 788888776      899999


Q ss_pred             EcccccCCCCCCc--cccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCc-eeEEEcCCC
Q 002875          240 SLMYNEMSGTVPE--SLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV-LFKLILFSN  316 (872)
Q Consensus       240 ~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~-l~~l~l~~n  316 (872)
                      ++++|+++ .+|.  .+..+++|++|++++|.+.|.+| .+..+++|+.|++++|.+. .+|..+..... |+.|++++|
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred             ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence            99999999 7887  89999999999999999998899 8888999999999999998 78888888888 889999998


Q ss_pred             cCCCCCCCCCCCCC--CCcEEEcCCCccccccCccCC-------CCCCCcEEEcCCCcCCCCCCchhhhhcccccccccC
Q 002875          317 NFTGSLSPSLSNCS--SLVRLRLEDNSFSGEIPLKFS-------QLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSN  387 (872)
Q Consensus       317 ~~~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  387 (872)
                      .+. .+|..+..++  +|+.|++++|.+++..|..+.       .+++|++|++++|.+....+..+..+++|++|++++
T Consensus       388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            888 6677776654  888999999998888888777       778888899998888854444455678888888888


Q ss_pred             CCCCCCcCCcccCCCcccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCccc--ccccCcEEEccCccceec
Q 002875          388 NPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVS--NCVELERIDLANNKLIGS  465 (872)
Q Consensus       388 n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~  465 (872)
                      |...  .+|...+...               .+....+++|+.|+++.|.+. .+|..+.  .+++|++|+|++|++++ 
T Consensus       467 N~l~--~i~~~~~~~~---------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          467 NMLT--EIPKNSLKDE---------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             SCCS--BCCSSSSEET---------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             CCCC--CcCHHHhccc---------------cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence            8432  3332221100               011233447788888888887 6787776  99999999999999998 


Q ss_pred             cchhccCCCCCCEEEC------CCCccccccCccccCCCCCcEEECcCCeeeecCCCCccccccCCccccCCCCCCCC
Q 002875          466 IPEVLARLPVLGVLDL------SHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGA  537 (872)
Q Consensus       466 ~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~  537 (872)
                      +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|++++|++ +.+|.. ....+....+.+||..|-.
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred             cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence            7888899999999999      56888999999999999999999999999 678865 3356677788999988743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.9e-45  Score=424.24  Aligned_cols=470  Identities=18%  Similarity=0.159  Sum_probs=392.2

Q ss_pred             cCCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccc
Q 002875            7 ALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEI   86 (872)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~   86 (872)
                      +||...    .+.|++|+|++|+++++.|.+|.++++|++|+|++|.+.+..|++|..+++|++||+++|.+.+..|..|
T Consensus        19 ~ip~~~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   94 (549)
T 2z81_A           19 SIPSGL----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF   94 (549)
T ss_dssp             SCCSCC----CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred             cccccC----CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence            456543    4689999999999999999999999999999999999999999999999999999999999998888789


Q ss_pred             cCCCCCCEEEccCCcccc-cCCcccCCCCCCcEeeCccCc-CCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCC
Q 002875           87 SQLEHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLAGNL-LNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV  164 (872)
Q Consensus        87 ~~L~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L  164 (872)
                      +++++|++|+|++|.+.+ ..|..|+++++|++|++++|. +....+..++.+++|++|++++|.+.+..|..+.++++|
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence            999999999999999986 357789999999999999998 444445789999999999999999999999999999999


Q ss_pred             cEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccC--C-cccccCCCCCEEeCcCCCCcCcCC----ccccCCCCCC
Q 002875          165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV--P-WEFSRVTTLKSLDLSDNRLSGPIP----ESFADLKNLR  237 (872)
Q Consensus       165 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~  237 (872)
                      ++|++++|.+.......+..+++|++|++++|++.+..  | .....+++|+.|++++|.+++..+    ..+..+++|+
T Consensus       175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~  254 (549)
T 2z81_A          175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS  254 (549)
T ss_dssp             EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred             ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence            99999999986433333467899999999999998752  1 223567899999999999876433    3456788999


Q ss_pred             EEEcccccCCCCC------CccccCCCCcceeecccccccccC-----CccCCCCCCCcEEecCCCeeeecCCCCCC-CC
Q 002875          238 LLSLMYNEMSGTV------PESLVQLPSLEILFIWNNYFSGSL-----PENLGRNSKLRWVDVSTNNFNGSIPPDIC-SG  305 (872)
Q Consensus       238 ~L~L~~n~l~~~~------p~~l~~l~~L~~L~l~~n~l~~~~-----p~~~~~~~~L~~L~ls~n~l~~~~p~~~~-~~  305 (872)
                      .+++++|.+.+..      ...+..+++|+.|++.++.+....     +..+....+|+.|++++|.+. .+|..++ ..
T Consensus       255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l  333 (549)
T 2z81_A          255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL  333 (549)
T ss_dssp             EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHC
T ss_pred             ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcC
Confidence            9999999876531      134567789999999888765321     111223467999999999986 6776653 57


Q ss_pred             CceeEEEcCCCcCCCCCC---CCCCCCCCCcEEEcCCCccccccC--ccCCCCCCCcEEEcCCCcCCCCCCchhhhhccc
Q 002875          306 GVLFKLILFSNNFTGSLS---PSLSNCSSLVRLRLEDNSFSGEIP--LKFSQLPDINYIDLSRNGFTGGIPTDINQASKL  380 (872)
Q Consensus       306 ~~l~~l~l~~n~~~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  380 (872)
                      ..|+.|++++|++.+..+   ..++.+++|+.|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L  412 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM  412 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence            889999999999987653   347889999999999999986543  45888999999999999998 578888889999


Q ss_pred             ccccccCCCCCCCcCCcccCCCcccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCcccccccCcEEEccCc
Q 002875          381 EYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANN  460 (872)
Q Consensus       381 ~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N  460 (872)
                      ++|++++|.. . .+|...  .++|+.|++++|.+++..   ..+++|+.|++++|.++ .+|. ...+++|++|+|++|
T Consensus       413 ~~L~Ls~N~l-~-~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N  483 (549)
T 2z81_A          413 RFLNLSSTGI-R-VVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN  483 (549)
T ss_dssp             CEEECTTSCC-S-CCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSS
T ss_pred             cEEECCCCCc-c-cccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCC
Confidence            9999999953 2 233332  268999999999998753   47889999999999998 6676 567999999999999


Q ss_pred             cceeccchhccCCCCCCEEECCCCccccccC
Q 002875          461 KLIGSIPEVLARLPVLGVLDLSHNSLSGQIP  491 (872)
Q Consensus       461 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  491 (872)
                      ++++.+|..+..+++|+.|++++|.+.+..|
T Consensus       484 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999999999999999999999987665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.6e-43  Score=415.51  Aligned_cols=513  Identities=19%  Similarity=0.166  Sum_probs=353.7

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      +.+++|||++|+|+++.+.+|.++++|++|+|++|+|+++.|++|+++++|++|+|++|++++..+..|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36888888888888888888888888888888888888877888888888888888888888766677888888888888


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCc-cCCccCCCCCCCCEEEccCccCcccCCccccCCCCC----cEEEeecC
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLND-QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV----QYLDIAGA  172 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L----~~L~ls~n  172 (872)
                      ++|.+++..+..|+++++|++|+|++|.++. ..|..++.+++|++|++++|.+.+..+..+..+.++    ..++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            8888887777778888888888888888865 356777888888888888888877767666554433    35777788


Q ss_pred             CCcccCCccCcCCCCCCEEEccCCCCcc-cCCcccccCCCCCEEeCcCC------CCcCcCCccccCCCCCCEEEccccc
Q 002875          173 NLSGSIPKELSNLTKLESLFLFRNQLAG-QVPWEFSRVTTLKSLDLSDN------RLSGPIPESFADLKNLRLLSLMYNE  245 (872)
Q Consensus       173 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~L~~n~  245 (872)
                      .+....+..+. ...++.+++..|.... ..+..+..+..++...+..+      .+.......+..+..+....+..+.
T Consensus       212 ~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            77755444443 3456677777765442 22233555666665544322      1222233344455555555555444


Q ss_pred             CCCC---CCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCC
Q 002875          246 MSGT---VPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSL  322 (872)
Q Consensus       246 l~~~---~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~  322 (872)
                      ....   .+..+..+.+++.+.+.++.+....  .+.....++.|++++|.+.+..+.   ....+..+.+..|......
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC
T ss_pred             hcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc
Confidence            3321   2233445567777777777665432  244456778888888877543222   2345666777776655432


Q ss_pred             CCCCCCCCCCcEEEcCCCcccc--ccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccC
Q 002875          323 SPSLSNCSSLVRLRLEDNSFSG--EIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTW  400 (872)
Q Consensus       323 ~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~  400 (872)
                        ....+++|+.|++++|.+..  ..+..+..+.+|++++++.|.... .+..+..+++|+.++++.|.......+..+.
T Consensus       366 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~  442 (635)
T 4g8a_A          366 --SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL  442 (635)
T ss_dssp             --CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred             --ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccc
Confidence              34467788888888887753  334455567778888888777653 3445666778888888777554444444556


Q ss_pred             CCcccccccccccccCCCCCC-CCcCCccceeecccccc-CCCCCCcccccccCcEEEccCccceeccchhccCCCCCCE
Q 002875          401 SLPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNL-SGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGV  478 (872)
Q Consensus       401 ~l~~L~~L~l~~~~l~~~~~~-~~~~~~l~~l~l~~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  478 (872)
                      .+++++.++++.|.+.+..+. +..++.++.++++.|.+ .+..|..|..+++|++|+|++|++++..|..|.++++|++
T Consensus       443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence            677788888888877665543 46677788888887764 4456777888888888888888888888888888888888


Q ss_pred             EECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCc--cccccCCccccCCCCCCCCCC
Q 002875          479 LDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGK--VLRLMGSSAYAGNPKLCGAPL  539 (872)
Q Consensus       479 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~~~~~~np~~c~~~l  539 (872)
                      |+|++|+|++..|..|..+++|++|++++|+|++..|..-  ....+....+.+||+.|+|.+
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            8888888888888888888888888888888887655431  113345566788888887653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-43  Score=422.00  Aligned_cols=463  Identities=17%  Similarity=0.176  Sum_probs=333.8

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCCcEEEC-cCCcCccccCccccCCC-CCCE-----EEc----------cCCcccc
Q 002875           42 TSLISLDISRNNFSGHFPGGIQSLRNLLVLDA-FSNSFSGSVPAEISQLE-HLKV-----LNL----------AGSYFSG  104 (872)
Q Consensus        42 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL-~~n~l~~~~p~~~~~L~-~L~~-----L~L----------~~n~~~~  104 (872)
                      .+++.|+|++|.+.+.+|.+|+.|++|++||| ++|.+.+..|....... .+..     +..          ....+..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57889999999999999999999999999999 88877765332211000 0000     000          0000000


Q ss_pred             -----------cCCcccCCCCCCcEeeCcc--CcCCccCCccCCCCCCCCEEEccCccCcc-----------------cC
Q 002875          105 -----------PIPSQFGSFKSLEFLHLAG--NLLNDQIPAELGMLKTVTHMEIGYNFYQG-----------------NI  154 (872)
Q Consensus       105 -----------~~p~~~~~l~~L~~L~L~~--n~l~~~~p~~l~~L~~L~~L~l~~n~~~~-----------------~~  154 (872)
                                 ..+........++.+.+..  |.+++ +|..++.+++|+.|++++|.+.+                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                       0000011112222222222  44444 44445555555555555555444                 58


Q ss_pred             Ccccc--CCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCC-Ccc-cCCcccccCC-------CCCEEeCcCCCCc
Q 002875          155 PWQLG--NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ-LAG-QVPWEFSRVT-------TLKSLDLSDNRLS  223 (872)
Q Consensus       155 p~~~~--~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~N~l~  223 (872)
                      |..++  ++++|++|++++|++.+.+|..+..+++|+.|+|++|+ +++ .+|..+..++       +|++|++++|.++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            88877  99999999999999999999999999999999999998 887 6777666555       9999999999999


Q ss_pred             CcCCc--cccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCC-CcEEecCCCeeeecCCC
Q 002875          224 GPIPE--SFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSK-LRWVDVSTNNFNGSIPP  300 (872)
Q Consensus       224 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~-L~~L~ls~n~l~~~~p~  300 (872)
                       .+|.  .++.+++|+.|++++|++. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             7888  8999999999999999999 777 8999999999999999999 88988999999 999999999998 7887


Q ss_pred             CCCCCCc--eeEEEcCCCcCCCCCCCC---CC--CCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCch
Q 002875          301 DICSGGV--LFKLILFSNNFTGSLSPS---LS--NCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTD  373 (872)
Q Consensus       301 ~~~~~~~--l~~l~l~~n~~~~~~~~~---~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  373 (872)
                      .+.....  |+.|.+++|.+.+.+|..   +.  .+++|+.|++++|.++...+..+..+++|+.|++++|++. .+|..
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~  715 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN  715 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence            7766544  999999999999876532   22  3458999999999999544444568999999999999999 55544


Q ss_pred             hhh--------hcccccccccCCCCCCCcCCcccCCCcccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCc
Q 002875          374 INQ--------ASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPES  445 (872)
Q Consensus       374 ~~~--------l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~  445 (872)
                      +..        +++|+.|++++|...  .+|..+.                     ...+++|+.|+++.|.+.+ +|..
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~---------------------~~~l~~L~~L~Ls~N~L~~-lp~~  771 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFR---------------------ATTLPYLSNMDVSYNCFSS-FPTQ  771 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGS---------------------TTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             HhccccccccccCCccEEECCCCCCc--cchHHhh---------------------hccCCCcCEEEeCCCCCCc-cchh
Confidence            322        236777777777332  3444433                     0134455555555556655 5777


Q ss_pred             ccccccCcEEEccC------ccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCcc
Q 002875          446 VSNCVELERIDLAN------NKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKV  519 (872)
Q Consensus       446 ~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~  519 (872)
                      +.++++|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++...-+....
T Consensus       772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~  848 (876)
T 4ecn_A          772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC  848 (876)
T ss_dssp             GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred             hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence            77888888888866      888999999999999999999999999 67777765  6999999999999754432211


Q ss_pred             c-cccCCccccCCCCCC--CCC
Q 002875          520 L-RLMGSSAYAGNPKLC--GAP  538 (872)
Q Consensus       520 ~-~~~~~~~~~~np~~c--~~~  538 (872)
                      . .......+.+|+..+  +|+
T Consensus       849 ~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          849 PYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             HHHHTTCCEEECCTTSEEESCG
T ss_pred             ccccchheeecCCCccccCCCC
Confidence            1 112334455555444  543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.2e-43  Score=403.06  Aligned_cols=452  Identities=19%  Similarity=0.238  Sum_probs=360.1

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccC
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN  124 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  124 (872)
                      ++||+++|.++. +|..+.  ++|++||+++|.+.+..|.+|.++++|++|+|++|.+.+..|..|+++++|++|+|++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            589999999984 666665  89999999999999888889999999999999999999988999999999999999999


Q ss_pred             cCCccCCccCCCCCCCCEEEccCccCcc-cCCccccCCCCCcEEEeecCCCcccCCccCcCCCCC--CEEEccCCCC--c
Q 002875          125 LLNDQIPAELGMLKTVTHMEIGYNFYQG-NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL--ESLFLFRNQL--A  199 (872)
Q Consensus       125 ~l~~~~p~~l~~L~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~  199 (872)
                      .++. +|..  .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .
T Consensus        80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            9984 5555  89999999999999987 578999999999999999999986   456677777  9999999999  7


Q ss_pred             ccCCcccccCC-CCCEEeCcCCCCcCcCC-ccccCCCCCCEEEccccc-------CCCCCCccccCCCCcceeecccccc
Q 002875          200 GQVPWEFSRVT-TLKSLDLSDNRLSGPIP-ESFADLKNLRLLSLMYNE-------MSGTVPESLVQLPSLEILFIWNNYF  270 (872)
Q Consensus       200 ~~~~~~~~~l~-~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L~~L~l~~n~l  270 (872)
                      +..|..+..+. ....+++++|.+.+.++ ..+..+++|+.|++++|.       +.+.+| .+..+++|+.|++++|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            77777776665 23357888888876554 467889999999999987       555554 688899999999999888


Q ss_pred             cccCCccCC---CCCCCcEEecCCCeeeecCCCCC-----CCCCceeEEEcCCCcCCCCCC-CCCCCC---CCCcEEEcC
Q 002875          271 SGSLPENLG---RNSKLRWVDVSTNNFNGSIPPDI-----CSGGVLFKLILFSNNFTGSLS-PSLSNC---SSLVRLRLE  338 (872)
Q Consensus       271 ~~~~p~~~~---~~~~L~~L~ls~n~l~~~~p~~~-----~~~~~l~~l~l~~n~~~~~~~-~~~~~l---~~L~~L~L~  338 (872)
                      ++..+..+.   ..++|+.|++++|.+.|.+|..+     ..+..|+.+.+..|.+  .+| ..+..+   .+|+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence            754322111   13589999999999998899887     6677788888888877  333 233333   568888888


Q ss_pred             CCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCC-
Q 002875          339 DNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG-  417 (872)
Q Consensus       339 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~-  417 (872)
                      +|.+....  .+..+++|++|++++|++.+.+|..+..+++|++|++++|.                         +++ 
T Consensus       311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------------------l~~l  363 (520)
T 2z7x_B          311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-------------------------LKEL  363 (520)
T ss_dssp             SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-------------------------CCBH
T ss_pred             CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-------------------------cCcc
Confidence            88775432  12567788888888888877777777777777777777763                         221 


Q ss_pred             -CCC-CCCcCCccceeeccccccCCCCCC-cccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccc
Q 002875          418 -NLP-PFKSCKSISVIESHMNNLSGTIPE-SVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKF  494 (872)
Q Consensus       418 -~~~-~~~~~~~l~~l~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  494 (872)
                       .+| .+..+++|+.|+++.|.+.+.+|. .+..+++|++|++++|++++..|..+.  +.|++|++++|+++ .+|..+
T Consensus       364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~  440 (520)
T 2z7x_B          364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV  440 (520)
T ss_dssp             HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred             ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence             111 135677899999999999986665 488899999999999999988877664  79999999999999 667766


Q ss_pred             cCCCCCcEEECcCCeeeecCCCCc--cccccCCccccCCCCCCCCCC
Q 002875          495 GSCSSLTVLNVSFNDISGSIPSGK--VLRLMGSSAYAGNPKLCGAPL  539 (872)
Q Consensus       495 ~~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~~~~~~np~~c~~~l  539 (872)
                      ..+++|++|++++|+++ .+|...  ....+....+.+||..|+|++
T Consensus       441 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          441 VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             GGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            69999999999999999 466542  234456667899999998653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.7e-43  Score=382.88  Aligned_cols=249  Identities=19%  Similarity=0.212  Sum_probs=190.4

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec------CCeeEE
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN------RHQAYL  680 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~------~~~~~l  680 (872)
                      ...+.||+|+||+||+|.. .+|+.||||+++...   ...+.+.+|+++|++++|||||++++++..      .+..||
T Consensus        57 ~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~i  136 (398)
T 4b99_A           57 EIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYV  136 (398)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEE
T ss_pred             EEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEE
Confidence            3889999999999999985 689999999997532   235567889999999999999999999864      357899


Q ss_pred             EEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc-
Q 002875          681 LYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA-  757 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~-  757 (872)
                      |||||+ |+|.+++..  ..++.+...|+.||+.||+|||++   +||||||||+|||++.++.+||+|||+|+..... 
T Consensus       137 vmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~  212 (398)
T 4b99_A          137 VLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSP  212 (398)
T ss_dssp             EEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCC----
T ss_pred             EEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeeecccCc
Confidence            999996 789999976  357888999999999999999999   9999999999999999999999999999754321 


Q ss_pred             -----CCCCcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-----------------
Q 002875          758 -----DGSFPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-----------------  814 (872)
Q Consensus       758 -----~~~~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-----------------  814 (872)
                           ......++.+|++||++.+. .++.++||||+||++|||+||+.||.+..........                 
T Consensus       213 ~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~  292 (398)
T 4b99_A          213 AEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGA  292 (398)
T ss_dssp             ---CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC----
T ss_pred             cccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhh
Confidence                 11223477889999987654 5688999999999999999999999754321100000                 


Q ss_pred             ccccccccccccCCCCchH----HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          815 GLLGEMYNENEVGSSSSLQ----DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..........+...+..+.    ....++.+++.+||+.||++|||++|+++|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          293 ERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             -CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             hhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            0000000000000011111    123567899999999999999999999875

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=4.6e-43  Score=379.78  Aligned_cols=194  Identities=14%  Similarity=0.155  Sum_probs=164.4

Q ss_pred             hhcCcchhhhccCCCCCceeeeec----CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ..+.||+|+||+||+|+.    .+++.||||++.... ....+.+|+++|+++ +|||||++++++.++++.|+
T Consensus        21 ~~Y~--i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~l   97 (361)
T 4f9c_A           21 NVFK--IEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVI   97 (361)
T ss_dssp             GTCE--EEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEE
T ss_pred             CcEE--EEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEE
Confidence            4455  889999999999999974    467899999987543 344567899999988 69999999999999999999


Q ss_pred             EEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEccccccccccccC-
Q 002875          681 LYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQLAD-  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~~~~~-  758 (872)
                      |||||++|+|.++++ ..++.+...++.|++.||+|||++   +|+||||||+|||++.+ +.+||+|||+|+...... 
T Consensus        98 vmE~~~g~~L~~~~~-~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~  173 (361)
T 4f9c_A           98 AMPYLEHESFLDILN-SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKI  173 (361)
T ss_dssp             EEECCCCCCHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSC
T ss_pred             EEeCCCcccHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccc
Confidence            999999999999985 578889999999999999999999   99999999999999876 799999999997432211 


Q ss_pred             -----------------------------CCCcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCC
Q 002875          759 -----------------------------GSFPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGS  806 (872)
Q Consensus       759 -----------------------------~~~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~  806 (872)
                                                   .....++++|++||+..+. .++.++||||+||++|||+||+.||..+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~  251 (361)
T 4f9c_A          174 ELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKAS  251 (361)
T ss_dssp             GGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred             cccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCC
Confidence                                         0112367889999987654 58899999999999999999999997654

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1e-42  Score=395.36  Aligned_cols=244  Identities=11%  Similarity=0.060  Sum_probs=193.7

Q ss_pred             cCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHH---HHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          608 FNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVS---EFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~---~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      |.  ..+.||+|+||+||+|.. .+|+.||||++++...    ......   .++.+++.++|||||++++++++++..|
T Consensus       191 f~--i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          191 FS--VHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             EE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             eE--EEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            55  889999999999999985 6899999999975321    122233   3466777889999999999999999999


Q ss_pred             EEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      +|||||+||+|.++|.+  ..+..+...|+.||+.||+|||++   +||||||||+||||+.+|.+||+|||+|+.....
T Consensus       269 lVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~  345 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  345 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecCCC
Confidence            99999999999999975  457888889999999999999999   9999999999999999999999999999876554


Q ss_pred             CCCCcccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          758 DGSFPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       758 ~~~~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      ......|+++|++||++. +..++.++||||+||++|||+||..||.+.......   .......... ...+.   ...
T Consensus       346 ~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~---~i~~~i~~~~-~~~p~---~~S  418 (689)
T 3v5w_A          346 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH---EIDRMTLTMA-VELPD---SFS  418 (689)
T ss_dssp             CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHH---HHHHHHHHCC-CCCCT---TSC
T ss_pred             CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH---HHHHhhcCCC-CCCCc---cCC
Confidence            444556788899999885 457899999999999999999999999753321110   1111111111 11111   233


Q ss_pred             HHHHHHHHHcccCCCCCCCC-----HHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      .++.+++.+||+.||++|++     ++|+.+|
T Consensus       419 ~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H  450 (689)
T 3v5w_A          419 PELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  450 (689)
T ss_dssp             HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred             HHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence            56789999999999999998     6887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.1e-41  Score=394.55  Aligned_cols=461  Identities=18%  Similarity=0.171  Sum_probs=306.0

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      ..+.+++++|.+++ +|..+.  ++|++|+|++|.|.+..|++|..+++|++|++++|.+++..|..|.++++|++|+|+
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            44788999999886 455554  788999999999888877888999999999999999888888888889999999999


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCcc-CCccCCCCCCCCEEEccCccCcccCCccccCCCCC--cEEEeecCCC-
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQ-IPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV--QYLDIAGANL-  174 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L--~~L~ls~n~l-  174 (872)
                      +|.++. +|..  .+++|++|+|++|.+++. .|..++.+++|++|++++|.+.+.   .+..+++|  +.|++++|.+ 
T Consensus       109 ~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~  182 (562)
T 3a79_B          109 HNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH  182 (562)
T ss_dssp             TSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred             CCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence            998884 5655  788999999999988763 457788888888888888877653   33444444  8888888887 


Q ss_pred             -cccCCccCcCCC--CCCEEEccCCCCcccCCc-ccccCCCCCEEeCcCCCCc----CcCCccccCCCCCCEEEcccccC
Q 002875          175 -SGSIPKELSNLT--KLESLFLFRNQLAGQVPW-EFSRVTTLKSLDLSDNRLS----GPIPESFADLKNLRLLSLMYNEM  246 (872)
Q Consensus       175 -~~~~p~~l~~l~--~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~n~l  246 (872)
                       .+..|..+..+.  .+ .++++.|.+.+..+. .+..+++|+.+++++|+..    ......+..+++|+.|+++.+.+
T Consensus       183 ~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l  261 (562)
T 3a79_B          183 IKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET  261 (562)
T ss_dssp             CCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred             ccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence             777777776654  22 456677776654443 3556677777777777421    01123456677777777776665


Q ss_pred             CCCC----CccccCCCCcceeecccccccccCCccC-----CCCCCCcEEecCCCeeeecCCCC-C---CCCCceeEEEc
Q 002875          247 SGTV----PESLVQLPSLEILFIWNNYFSGSLPENL-----GRNSKLRWVDVSTNNFNGSIPPD-I---CSGGVLFKLIL  313 (872)
Q Consensus       247 ~~~~----p~~l~~l~~L~~L~l~~n~l~~~~p~~~-----~~~~~L~~L~ls~n~l~~~~p~~-~---~~~~~l~~l~l  313 (872)
                      .+..    +.. ...++|++|++++|.+.|.+|..+     ..+..|+.++++.|.+  .+|.. +   +....++.+.+
T Consensus       262 ~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          262 TWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             CHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred             cHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence            4321    111 123477777777777776666665     4444444445444443  22211 0   01123555555


Q ss_pred             CCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCC
Q 002875          314 FSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGG  393 (872)
Q Consensus       314 ~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~  393 (872)
                      .+|.+.....  ...+++|++|++++|++++..|..+..+++|++|++++|++++..                       
T Consensus       339 ~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------------  393 (562)
T 3a79_B          339 SDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-----------------------  393 (562)
T ss_dssp             ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-----------------------
T ss_pred             cCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc-----------------------
Confidence            5555432211  134555555555555555555555555555555555555555321                       


Q ss_pred             cCCcccCCCcccccccccccccCCCCCC--CCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchhcc
Q 002875          394 MIPAQTWSLPSLQNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLA  471 (872)
Q Consensus       394 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~--~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  471 (872)
                      ..|..+..+++|+.|++++|.+++.+|.  +..+++|+.++++.|.+++.+|..+.  ++|++|++++|+++. +|..+.
T Consensus       394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~  470 (562)
T 3a79_B          394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVT  470 (562)
T ss_dssp             HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTT
T ss_pred             cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhc
Confidence            1122233444555555555555443332  45566777777777777666665543  689999999999984 555555


Q ss_pred             CCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCccc
Q 002875          472 RLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVL  520 (872)
Q Consensus       472 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~  520 (872)
                      .+++|++|+|++|++++..+..|..+++|+.|++++|++++.++..+..
T Consensus       471 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~  519 (562)
T 3a79_B          471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL  519 (562)
T ss_dssp             SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHH
T ss_pred             CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHH
Confidence            9999999999999999665555999999999999999999887765543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.2e-42  Score=397.50  Aligned_cols=249  Identities=19%  Similarity=0.237  Sum_probs=201.1

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||++.... ...+.+.+|+++|++++|||||++++++++++..|||
T Consensus       155 il~~Y~--i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv  232 (573)
T 3uto_A          155 VLDHYD--IHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI  232 (573)
T ss_dssp             GGGTEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred             CccccE--EEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            445565  889999999999999985 689999999997643 3466788999999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC--CCeeEccccccccccc
Q 002875          682 YDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN--MEPHLAEFGFKYLTQL  756 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~--~~~ki~dfg~~~~~~~  756 (872)
                      ||||+||+|.+++..   ..++.+...++.||+.||+|||++   +|+||||||+|||++.+  +.+||+|||+++....
T Consensus       233 ~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~  309 (573)
T 3uto_A          233 YEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP  309 (573)
T ss_dssp             EECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred             EeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence            999999999999964   346788899999999999999999   99999999999999854  7899999999986543


Q ss_pred             cCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          757 ADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       757 ~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      ... ....++.+|++||++.+..++.++||||+||++|||++|..||.+.....      .+..+.........+.....
T Consensus       310 ~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~  383 (573)
T 3uto_A          310 KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE------TLRNVKSCDWNMDDSAFSGI  383 (573)
T ss_dssp             TSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH------HHHHHHTTCCCCCSGGGTTS
T ss_pred             CCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH------HHHHHHhCCCCCCcccccCC
Confidence            322 12346778999999998899999999999999999999999997543211      11111111101111112233


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..++.+++.+||+.||++|||++|+++|
T Consensus       384 s~~~~dli~~~L~~dp~~R~t~~e~l~H  411 (573)
T 3uto_A          384 SEDGKDFIRKLLLADPNTRMTIHQALEH  411 (573)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            4567899999999999999999999985

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.7e-40  Score=392.49  Aligned_cols=502  Identities=19%  Similarity=0.164  Sum_probs=346.1

Q ss_pred             cchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCC
Q 002875           10 GKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQL   89 (872)
Q Consensus        10 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L   89 (872)
                      ..+.+  ++.|++|+|++|+|+++.+.+|.++++|++|+|++|+|++..++.|.++++|++|+|++|.+++..+..|+++
T Consensus        70 ~~f~~--l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L  147 (635)
T 4g8a_A           70 YSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  147 (635)
T ss_dssp             TTTTT--CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             HHHhC--CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence            35666  8999999999999999999999999999999999999998888899999999999999999998777889999


Q ss_pred             CCCCEEEccCCcccc-cCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCC----CEEEccCccCcccCCccccCCCCC
Q 002875           90 EHLKVLNLAGSYFSG-PIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV----THMEIGYNFYQGNIPWQLGNMSEV  164 (872)
Q Consensus        90 ~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L----~~L~l~~n~~~~~~p~~~~~l~~L  164 (872)
                      ++|++|+|++|.+.. ..|..++.+++|++|+|++|.+++..+..+..+.++    ..++++.|.+....+.. .....+
T Consensus       148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~  226 (635)
T 4g8a_A          148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRL  226 (635)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEE
T ss_pred             cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc-ccchhh
Confidence            999999999999976 468889999999999999999999888888766554    36788888776544433 334456


Q ss_pred             cEEEeecCCCcc-cCCccCcCCCCCCEEEccCCC------CcccCCcccccCCCCCEEeCcCCCCcC---cCCccccCCC
Q 002875          165 QYLDIAGANLSG-SIPKELSNLTKLESLFLFRNQ------LAGQVPWEFSRVTTLKSLDLSDNRLSG---PIPESFADLK  234 (872)
Q Consensus       165 ~~L~ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~  234 (872)
                      +.+++.+|.... ..+..+..+..++...+..+.      +.......+..+..+...++..+....   .....+..+.
T Consensus       227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~  306 (635)
T 4g8a_A          227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT  306 (635)
T ss_dssp             EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred             hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence            778888776542 223345556666655543222      111222233334444444433322211   1223344455


Q ss_pred             CCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcC
Q 002875          235 NLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILF  314 (872)
Q Consensus       235 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~  314 (872)
                      +++.+.+..+.+....  .+....+|+.|++.+|.+.+..+.   .+..|+.++++.|.....  ......+.++.+.++
T Consensus       307 ~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls  379 (635)
T 4g8a_A          307 NVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLS  379 (635)
T ss_dssp             TCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECC
T ss_pred             cccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhh
Confidence            5555555555544321  233445555666665555433222   233455555555544321  122234455555555


Q ss_pred             CCcCCC--CCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCC-chhhhhcccccccccCCCCC
Q 002875          315 SNNFTG--SLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIP-TDINQASKLEYFNVSNNPKL  391 (872)
Q Consensus       315 ~n~~~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ls~n~~l  391 (872)
                      .|.+..  ..+..+..+.+|+.|++..|.+.. .+..+..+++|+.++++.|+.....+ ..+..+.+++.+++++| .+
T Consensus       380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l  457 (635)
T 4g8a_A          380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HT  457 (635)
T ss_dssp             SSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccc-cc
Confidence            555432  223334455666666666666553 33455666666666666665544433 34555666666666666 33


Q ss_pred             CCcCCcccCCCcccccccccccccCCC-CC-CCCcCCccceeeccccccCCCCCCcccccccCcEEEccCccceeccchh
Q 002875          392 GGMIPAQTWSLPSLQNFSASACNITGN-LP-PFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEV  469 (872)
Q Consensus       392 ~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~-~~~~~~~l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  469 (872)
                      ....+..+..+++++.|++++|..... .| .+..+++|+.|+++.|.+.+..|..|.++++|++|+|++|++++..|..
T Consensus       458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  537 (635)
T 4g8a_A          458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  537 (635)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred             ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence            344455555566677777776654332 22 3567788888888889998888999999999999999999999999999


Q ss_pred             ccCCCCCCEEECCCCccccccCccccCC-CCCcEEECcCCeeeecCCCCcccccc
Q 002875          470 LARLPVLGVLDLSHNSLSGQIPAKFGSC-SSLTVLNVSFNDISGSIPSGKVLRLM  523 (872)
Q Consensus       470 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~~~~  523 (872)
                      |..+++|++|||++|+|++..|..|..+ ++|++|++++|++++.+...++..|+
T Consensus       538 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl  592 (635)
T 4g8a_A          538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  592 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence            9999999999999999999999999988 68999999999999988765555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=379.76  Aligned_cols=456  Identities=20%  Similarity=0.254  Sum_probs=338.7

Q ss_pred             CCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEe
Q 002875           40 NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFL  119 (872)
Q Consensus        40 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  119 (872)
                      .....+++++++|.+++ +|..+.  ++|++||+++|.+.+..|.+|.++++|++|+|++|.+++..|+.|+++++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            34455899999999986 665553  899999999999998888899999999999999999999989999999999999


Q ss_pred             eCccCcCCccCCccCCCCCCCCEEEccCccCcc-cCCccccCCCCCcEEEeecCCCcccCCccCcCCCCC--CEEEccCC
Q 002875          120 HLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG-NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL--ESLFLFRN  196 (872)
Q Consensus       120 ~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L--~~L~L~~n  196 (872)
                      +|++|.++. +|..  .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.   .+..+++|  +.|+++.|
T Consensus       106 ~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          106 DVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             ECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred             ECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence            999999984 5555  89999999999999887 4578899999999999999999864   34455555  99999999


Q ss_pred             CC--cccCCcccccCC-CCCEEeCcCCCCcCcCCc-cccCCCCCCEEEcccccCC----CCCCccccCCCCcceeecccc
Q 002875          197 QL--AGQVPWEFSRVT-TLKSLDLSDNRLSGPIPE-SFADLKNLRLLSLMYNEMS----GTVPESLVQLPSLEILFIWNN  268 (872)
Q Consensus       197 ~l--~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~l~~n  268 (872)
                      .+  .+..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+..    ......+..+++|+.|++.++
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence            99  888888777765 112568888888775543 5678899999999988521    012235677888888888887


Q ss_pred             ccccc----CCccCCCCCCCcEEecCCCeeeecCCCCC-----CCCCceeEEEcCCCcCCCCCC-CCCCC---CCCCcEE
Q 002875          269 YFSGS----LPENLGRNSKLRWVDVSTNNFNGSIPPDI-----CSGGVLFKLILFSNNFTGSLS-PSLSN---CSSLVRL  335 (872)
Q Consensus       269 ~l~~~----~p~~~~~~~~L~~L~ls~n~l~~~~p~~~-----~~~~~l~~l~l~~n~~~~~~~-~~~~~---l~~L~~L  335 (872)
                      .+.+.    .+..+ ...+|++|++++|.+.|.+|..+     ..+..|..+.+..+.+  .+| ..+..   ..+|+.|
T Consensus       260 ~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L  336 (562)
T 3a79_B          260 ETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML  336 (562)
T ss_dssp             EECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred             cCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence            76542    12222 23478999999999988888776     3344444444444444  222 11111   1457777


Q ss_pred             EcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCccccccccccccc
Q 002875          336 RLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNI  415 (872)
Q Consensus       336 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l  415 (872)
                      ++++|.+....  ....+++|++|++++|.+.+.+|..+..+++|++|++++|                         .+
T Consensus       337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-------------------------~l  389 (562)
T 3a79_B          337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-------------------------GL  389 (562)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-------------------------CC
T ss_pred             EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-------------------------Cc
Confidence            77777664321  1155667777777777766655555555555555555555                         44


Q ss_pred             CCCC--C-CCCcCCccceeeccccccCCCCCC-cccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccC
Q 002875          416 TGNL--P-PFKSCKSISVIESHMNNLSGTIPE-SVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIP  491 (872)
Q Consensus       416 ~~~~--~-~~~~~~~l~~l~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  491 (872)
                      ++..  | .+..+++|+.++++.|.+.+.+|. .+..+++|++|++++|++++..|..+.  ++|++|+|++|+++. +|
T Consensus       390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip  466 (562)
T 3a79_B          390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IP  466 (562)
T ss_dssp             CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CC
T ss_pred             CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cC
Confidence            4311  1 367788999999999999985664 588999999999999999887776554  799999999999995 55


Q ss_pred             ccccCCCCCcEEECcCCeeeecCCCC--ccccccCCccccCCCCCCCCC
Q 002875          492 AKFGSCSSLTVLNVSFNDISGSIPSG--KVLRLMGSSAYAGNPKLCGAP  538 (872)
Q Consensus       492 ~~~~~l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~~~~~~np~~c~~~  538 (872)
                      ..+..+++|++|++++|+++ .+|..  .....+....+.+||+.|+|+
T Consensus       467 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            55559999999999999999 46654  233455667789999999865

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=6.9e-40  Score=353.49  Aligned_cols=257  Identities=26%  Similarity=0.410  Sum_probs=207.2

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.|.  ..+.||+|+||.||+|+..+|+.||||++.... ...+.+.+|++++++++|||||+++++|.+.+..++||
T Consensus        37 ~~~~y~--~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  114 (321)
T 2qkw_B           37 ATNNFD--HKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIY  114 (321)
T ss_dssp             CCCCCS--CCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEE
T ss_pred             HHhccC--ccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEE
Confidence            334455  888999999999999999899999999987543 34667899999999999999999999999999999999


Q ss_pred             cccCCCChHHHhhCC------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          683 DYLPNGNLSEKIRTK------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       683 ey~~~g~L~~~l~~~------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      ||+++|+|.+++...      .++.++..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       115 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  191 (321)
T 2qkw_B          115 KYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTE  191 (321)
T ss_dssp             ECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCEECSS
T ss_pred             EcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence            999999999999652      57899999999999999999999   999999999999999999999999999875432


Q ss_pred             cCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc---------ccccccccc
Q 002875          757 ADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID---------GLLGEMYNE  823 (872)
Q Consensus       757 ~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~---------~~~~~~~~~  823 (872)
                      ...    ....++..|.+||......++.++|||||||++|||+||+.||............         ..+.+..++
T Consensus       192 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (321)
T 2qkw_B          192 LDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDP  271 (321)
T ss_dssp             SSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSS
T ss_pred             ccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcCh
Confidence            211    1122456688889887778899999999999999999999998754432211100         111122222


Q ss_pred             cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ...  .....+....+.+++.+||+.||++|||++|++++|+.+
T Consensus       272 ~~~--~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  313 (321)
T 2qkw_B          272 NLA--DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA  313 (321)
T ss_dssp             SCT--TCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             hhc--cccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence            111  122356677889999999999999999999999999765

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=5.8e-40  Score=355.07  Aligned_cols=259  Identities=30%  Similarity=0.517  Sum_probs=206.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      +.|.  ..+.||+|+||.||+|...+|+.||||++.....  ....+.+|++++++++|||||+++++|.+++..++|||
T Consensus        30 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  107 (326)
T 3uim_A           30 DNFS--NKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  107 (326)
T ss_dssp             TSSC--STTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEE
T ss_pred             hccc--cceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEE
Confidence            3455  8899999999999999998999999999975432  23468899999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          684 YLPNGNLSEKIRTK------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       684 y~~~g~L~~~l~~~------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      |+++|+|.+++...      .++..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+||+|||+++.....
T Consensus       108 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  187 (326)
T 3uim_A          108 YMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYK  187 (326)
T ss_dssp             CCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSS
T ss_pred             eccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcc
Confidence            99999999999753      578899999999999999999988889999999999999999999999999999765332


Q ss_pred             CCC---CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCC--CCccc---------cccccccccc
Q 002875          758 DGS---FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSL--QNKPI---------DGLLGEMYNE  823 (872)
Q Consensus       758 ~~~---~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~--~~~~~---------~~~~~~~~~~  823 (872)
                      ...   ...++..|.+||...+..++.++||||+||++|||+||+.||......  .....         ........+.
T Consensus       188 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (326)
T 3uim_A          188 DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDV  267 (326)
T ss_dssp             SSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCT
T ss_pred             cccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcCh
Confidence            221   122556688889887778899999999999999999999998621100  00000         0111111111


Q ss_pred             cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ..  ......+....+.+++.+||+.||++|||++|++++|++..
T Consensus       268 ~~--~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~  310 (326)
T 3uim_A          268 DL--QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG  310 (326)
T ss_dssp             TC--TTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred             hh--ccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence            11  12233566778999999999999999999999999997654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=2.5e-40  Score=356.76  Aligned_cols=259  Identities=17%  Similarity=0.247  Sum_probs=199.4

Q ss_pred             cchhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCC----eeEEEEccc
Q 002875          610 STECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH----QAYLLYDYL  685 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lv~ey~  685 (872)
                      |...+.||+|+||.||+|+.. |+.||||++...........+|+.++++++|||||++++++.+..    ..++|||||
T Consensus        26 y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~  104 (322)
T 3soc_A           26 LQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFH  104 (322)
T ss_dssp             EEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred             chhhheecccCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecC
Confidence            348899999999999999874 899999999866555666777899999999999999999998743    479999999


Q ss_pred             CCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhC-------CCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          686 PNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHD-------CYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       686 ~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~-------~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      ++|+|.++++. ..++.++..++.|+++||+|||+.       +.++|+||||||+||+++.++.+||+|||+++.....
T Consensus       105 ~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~  184 (322)
T 3soc_A          105 EKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAG  184 (322)
T ss_dssp             TTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTT
T ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccc
Confidence            99999999976 468999999999999999999986       2458999999999999999999999999999754332


Q ss_pred             CC----CCcccccccCchhhhcc-----cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccc---------cc-
Q 002875          758 DG----SFPAKIAWTESGEFYNA-----MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGL---------LG-  818 (872)
Q Consensus       758 ~~----~~~~~~~~~~~~e~~~~-----~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~---------~~-  818 (872)
                      ..    ....++..|.+||...+     ..++.++|||||||++|||+||+.||.........+....         .. 
T Consensus       185 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (322)
T 3soc_A          185 KSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQE  264 (322)
T ss_dssp             SCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHH
T ss_pred             cCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhh
Confidence            21    11234566788887765     3456778999999999999999999875433221111100         00 


Q ss_pred             ccccccccCC-CC--chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          819 EMYNENEVGS-SS--SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       819 ~~~~~~~~~~-~~--~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ........+. ..  .......++.+++.+||+.||++|||++|+++.|+.++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~  318 (322)
T 3soc_A          265 VVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR  318 (322)
T ss_dssp             HHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            0000100000 11  112345668899999999999999999999999988754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.2e-39  Score=363.66  Aligned_cols=392  Identities=18%  Similarity=0.137  Sum_probs=257.4

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCccccc-CCcccCCCCCCcEeeCcc
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGP-IPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~  123 (872)
                      +.++.+++.++. +|. +  .++|++|||++|.+++..|..|.++++|++|+|++|.+.+. .|..|.++++|++|+|++
T Consensus        13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            456777777763 444 2  26788888888888877777888888888888888877643 356788888888888888


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcccCCcc--ccCCCCCcEEEeecCCCcccCCcc-CcCCCCCCEEEccCCCCcc
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQ--LGNMSEVQYLDIAGANLSGSIPKE-LSNLTKLESLFLFRNQLAG  200 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~  200 (872)
                      |.+++..|..++.+++|++|++++|.+.+.+|..  +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            8887766777777777776666666665533332  555556666666666555554443 4555555555555555555


Q ss_pred             cCCcccccC--CCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccC
Q 002875          201 QVPWEFSRV--TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL  278 (872)
Q Consensus       201 ~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~  278 (872)
                      ..+..+..+  .+|+.|++++|.+.+..+..++.                .....+..+++|++|++++|.+.+..|..+
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  232 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRF  232 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred             cChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhh
Confidence            555444443  34555555555554332222110                000012234455555555555555444433


Q ss_pred             CC---CCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCC--CCCCCcEEEcCCCccccccCccCCCC
Q 002875          279 GR---NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLS--NCSSLVRLRLEDNSFSGEIPLKFSQL  353 (872)
Q Consensus       279 ~~---~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l  353 (872)
                      ..   ..+++.|++++|...+...              ..+.+....+..+.  ..++|+.|++++|.+++..|..|..+
T Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  298 (455)
T 3v47_A          233 FDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF  298 (455)
T ss_dssp             HHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred             hccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccC
Confidence            22   2455666666554432110              11111112222222  23678888888888888888888888


Q ss_pred             CCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCCCCCCCcCCccceeec
Q 002875          354 PDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIES  433 (872)
Q Consensus       354 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l  433 (872)
                      ++|++|++++|.+.+..|..+..+++|++|++++|                                             
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N---------------------------------------------  333 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN---------------------------------------------  333 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS---------------------------------------------
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCC---------------------------------------------
Confidence            88888888888887666666666666666666555                                             


Q ss_pred             cccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeec
Q 002875          434 HMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGS  513 (872)
Q Consensus       434 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  513 (872)
                         .+.+..|..+.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++.
T Consensus       334 ---~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          334 ---FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             ---CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ---ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence               22223455677889999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             CCCCc
Q 002875          514 IPSGK  518 (872)
Q Consensus       514 ~p~~~  518 (872)
                      +|...
T Consensus       411 ~~~~~  415 (455)
T 3v47_A          411 CPRID  415 (455)
T ss_dssp             TTTTH
T ss_pred             CCcch
Confidence            98654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=5.8e-40  Score=349.39  Aligned_cols=246  Identities=15%  Similarity=0.228  Sum_probs=197.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++.... ...+.+.+|+.++++++|||||++++++.+.+..|+|||
T Consensus        20 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   97 (297)
T 3fxz_A           20 KKYT--RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (297)
T ss_dssp             GTBC--CCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcee--eeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence            4455  889999999999999984 789999999997543 345678899999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC-CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          684 YLPNGNLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       684 y~~~g~L~~~l~~~-~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      |+++|+|.+++... .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.........  
T Consensus        98 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  174 (297)
T 3fxz_A           98 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS  174 (297)
T ss_dssp             CCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBC
T ss_pred             CCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccC
Confidence            99999999999764 68888999999999999999999   9999999999999999999999999998754432221  


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...++..|.+||...+..++.++||||+||++|||+||+.||..........      ...... .............+.
T Consensus       175 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~  247 (297)
T 3fxz_A          175 TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY------LIATNG-TPELQNPEKLSAIFR  247 (297)
T ss_dssp             CCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH------HHHHHC-SCCCSCGGGSCHHHH
T ss_pred             CccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH------HHHhCC-CCCCCCccccCHHHH
Confidence            2235666888999888889999999999999999999999987543211000      000000 000111122334677


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||+.||++|||++|++++
T Consensus       248 ~li~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          248 DFLNRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHHHHccCChhHCcCHHHHhhC
Confidence            89999999999999999999864

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=9.6e-40  Score=342.82  Aligned_cols=249  Identities=17%  Similarity=0.246  Sum_probs=200.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|...++..||||++.......+.+.+|++++++++||||+++++++.+++..++||||+++|+|.
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   91 (268)
T 3sxs_A           12 LLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLL   91 (268)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHH
T ss_pred             eeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHH
Confidence            78899999999999999988999999999876666778899999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---Ccccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---FPAKI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---~~~~~  765 (872)
                      +++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........   ...+.
T Consensus        92 ~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~  168 (268)
T 3sxs_A           92 NYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFP  168 (268)
T ss_dssp             HHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCC
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcC
Confidence            99975   368899999999999999999999   9999999999999999999999999998754332211   11123


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||...+..++.++||||+||++|||+| |+.||........      ............+..   ....+.+++.
T Consensus       169 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~l~~li~  239 (268)
T 3sxs_A          169 VKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEV------VLKVSQGHRLYRPHL---ASDTIYQIMY  239 (268)
T ss_dssp             GGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHH------HHHHHTTCCCCCCTT---SCHHHHHHHH
T ss_pred             cccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHH------HHHHHcCCCCCCCCc---ChHHHHHHHH
Confidence            34778888887788899999999999999999 7777754321110      001111110111111   1245778999


Q ss_pred             HcccCCCCCCCCHHHHHHHHcccCCCCC
Q 002875          845 LCTRSTPSDRPSMEEALKLLSGLKPHGK  872 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~~~~~~~~  872 (872)
                      .||+.||++|||++|++++|+.+++..|
T Consensus       240 ~~l~~~p~~Rps~~~ll~~L~~l~~~~k  267 (268)
T 3sxs_A          240 SCWHELPEKRPTFQQLLSSIEPLREKDK  267 (268)
T ss_dssp             HTTCSSGGGSCCHHHHHHHHGGGCC---
T ss_pred             HHcCCChhhCcCHHHHHHHHHHhhhccC
Confidence            9999999999999999999999987654

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3e-40  Score=355.25  Aligned_cols=247  Identities=17%  Similarity=0.195  Sum_probs=198.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      +.|.  ..+.||+|+||.||+|+. .+|+.||+|.+.......+.+.+|+.++++++|||||++++++.+.+..++||||
T Consensus         5 ~~y~--~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            5 EKYM--IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hceE--eeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            4455  888999999999999986 5789999999987666677789999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC--CCCeeEccccccccccccCC
Q 002875          685 LPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE--NMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       685 ~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~--~~~~ki~dfg~~~~~~~~~~  759 (872)
                      |++|+|.+++...   .++.+...++.|++.||+|||+.   +|+||||||+||+++.  ++.+||+|||+++.......
T Consensus        83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~  159 (321)
T 1tki_A           83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN  159 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCc
Confidence            9999999999753   57888999999999999999999   9999999999999987  78999999999976543221


Q ss_pred             -CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          760 -SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       ....++++|.+||...+..++.++||||+||++|||+||..||.......      ....+.........+.......+
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~s~~  233 (321)
T 1tki_A          160 FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ------IIENIMNAEYTFDEEAFKEISIE  233 (321)
T ss_dssp             EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHTCCCCCHHHHTTSCHH
T ss_pred             cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH------HHHHHHcCCCCCChhhhccCCHH
Confidence             11225566888898887778899999999999999999999987543211      11111111101001111223456


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+++.+||+.||++|||++|++++
T Consensus       234 ~~~li~~~L~~dp~~Rpt~~e~l~h  258 (321)
T 1tki_A          234 AMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHcCCChhHCcCHHHHhcC
Confidence            8899999999999999999999875

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1e-39  Score=351.50  Aligned_cols=239  Identities=17%  Similarity=0.201  Sum_probs=193.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....   ...+.+.+|++++++++|||||++++++.+.+..|+||||+++
T Consensus        19 ~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~   98 (328)
T 3fe3_A           19 LLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASG   98 (328)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCC
Confidence            889999999999999986 789999999997532   2355678899999999999999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCccc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPAK  764 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~~~  764 (872)
                      |+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ....+
T Consensus        99 ~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~g  175 (328)
T 3fe3_A           99 GEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCG  175 (328)
T ss_dssp             CBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSS
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccC
Confidence            999999854  567888899999999999999999   999999999999999999999999999875433221 12235


Q ss_pred             ccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      +.+|.+||...+..+ +.++||||+||++|||+||+.||.+.....      ....+.... ...+.   ....++.+++
T Consensus       176 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~~li  245 (328)
T 3fe3_A          176 APPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKE------LRERVLRGK-YRIPF---YMSTDCENLL  245 (328)
T ss_dssp             SGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TSCHHHHHHH
T ss_pred             CcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCC-CCCCC---CCCHHHHHHH
Confidence            667888898876665 478999999999999999999987543111      111111111 00111   1234577899


Q ss_pred             HHcccCCCCCCCCHHHHHHH
Q 002875          844 LLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+||+.||++|||++|++++
T Consensus       246 ~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          246 KRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             HHHCCSSTTTSCCHHHHTTC
T ss_pred             HHHCCCChhHCcCHHHHhcC
Confidence            99999999999999999875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=345.87  Aligned_cols=247  Identities=18%  Similarity=0.261  Sum_probs=197.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc-chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG-ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~-~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++... ....+.+.+|++++++++|||||++++++.+++..++||||+++|+
T Consensus        14 ~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~   93 (310)
T 3s95_A           14 HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGT   93 (310)
T ss_dssp             EEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCB
T ss_pred             ccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCc
Confidence            788999999999999986 57999999988643 3456788999999999999999999999999999999999999999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC------
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS------  760 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~------  760 (872)
                      |.+++..   ..++.++..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++........      
T Consensus        94 L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  170 (310)
T 3s95_A           94 LRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRS  170 (310)
T ss_dssp             HHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC-----------
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccccccccccc
Confidence            9999975   458899999999999999999999   9999999999999999999999999998754322111      


Q ss_pred             ----------CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          761 ----------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       761 ----------~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                                ...++..|.+||...+..++.++|||||||++|||+||..|+........... ...........   ++
T Consensus       171 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~  246 (310)
T 3s95_A          171 LKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG-LNVRGFLDRYC---PP  246 (310)
T ss_dssp             ---------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSS-BCHHHHHHHTC---CT
T ss_pred             ccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHh-hhhhccccccC---CC
Confidence                      12355668889998888889999999999999999999988764332211110 00111111100   00


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                         .....+.+++.+||+.||++|||++|+++.|+.++
T Consensus       247 ---~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~  281 (310)
T 3s95_A          247 ---NCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLR  281 (310)
T ss_dssp             ---TCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence               11235778899999999999999999999998764

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.1e-39  Score=355.48  Aligned_cols=251  Identities=19%  Similarity=0.165  Sum_probs=199.5

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-------hHHHHHHHHHHhhccCCCCceeEEEEEe
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-------RIKIVSEFITRIGTVRHKNLIRLLGFCY  673 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~  673 (872)
                      .++.+.|.  ..+.||+|+||.||+|.. .+|+.||||.+.....       ..+.+.+|+.++++++|||||++++++.
T Consensus         8 ~~~~~~y~--~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~   85 (361)
T 2yab_A            8 QKVEDFYD--IGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYE   85 (361)
T ss_dssp             SCGGGTEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             CChhhceE--EeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEE
Confidence            34445566  889999999999999986 5799999999975432       2467889999999999999999999999


Q ss_pred             cCCeeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC----CeeEcc
Q 002875          674 NRHQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM----EPHLAE  747 (872)
Q Consensus       674 ~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~----~~ki~d  747 (872)
                      +.+..|+||||+++|+|.+++...  .++.+...++.||+.||+|||+.   +|+||||||+||+++.++    .+||+|
T Consensus        86 ~~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~D  162 (361)
T 2yab_A           86 NRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLID  162 (361)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECC
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEe
Confidence            999999999999999999999763  57888999999999999999999   999999999999998776    799999


Q ss_pred             ccccccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc
Q 002875          748 FGFKYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       748 fg~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      ||+++....... ....++..|.+||+..+..++.++||||+||++|||+||..||.+.....      ....+......
T Consensus       163 FG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~------~~~~i~~~~~~  236 (361)
T 2yab_A          163 FGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE------TLANITAVSYD  236 (361)
T ss_dssp             CSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH------HHHHHHTTCCC
T ss_pred             cCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhcCCC
Confidence            999976543322 22336677889999888888999999999999999999999997543211      11111111100


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...+........+.+++.+||..||++|||++|++++
T Consensus       237 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h  273 (361)
T 2yab_A          237 FDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (361)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            0001112233567889999999999999999999864

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=3.1e-39  Score=354.43  Aligned_cols=244  Identities=21%  Similarity=0.266  Sum_probs=194.1

Q ss_pred             hhhhccCCCCCceeeeec--------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL--------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.||+|+||.||+|..        .++..||||+++...  ...+.+.+|+++++++ +|||||+++++|.+.+..|+
T Consensus        85 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~l  164 (370)
T 2psq_A           85 LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV  164 (370)
T ss_dssp             EEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEE
T ss_pred             eeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEE
Confidence            788999999999999974        356689999997543  2356788999999999 89999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          681 LYDYLPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      ||||+++|+|.+++...                  .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.
T Consensus       165 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~  241 (370)
T 2psq_A          165 IVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNV  241 (370)
T ss_dssp             EEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCC
T ss_pred             EEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEECCCCC
Confidence            99999999999999642                  47888899999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccc
Q 002875          743 PHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~  817 (872)
                      +||+|||+++.......    ....++..|.+||...+..++.++|||||||++|||+| |+.||.+.....      ..
T Consensus       242 ~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~------~~  315 (370)
T 2psq_A          242 MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE------LF  315 (370)
T ss_dssp             EEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG------HH
T ss_pred             EEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH------HH
Confidence            99999999975433221    11123345788898888889999999999999999999 777776432111      11


Q ss_pred             cccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          818 GEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+........+   .....++.+++.+||+.||++|||++|+++.|+.+
T Consensus       316 ~~~~~~~~~~~~---~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i  362 (370)
T 2psq_A          316 KLLKEGHRMDKP---ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  362 (370)
T ss_dssp             HHHHTTCCCCCC---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCCC---CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            111111101111   12234677899999999999999999999999875

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.1e-39  Score=348.98  Aligned_cols=246  Identities=21%  Similarity=0.270  Sum_probs=191.2

Q ss_pred             chhhhccCCCCCceeeeecCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          611 TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ...+.||+|+||.||+|.. +|+.||||++....   ...+.+.+|++++++++|||||++++++.+.+..++||||+++
T Consensus        40 ~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  118 (309)
T 3p86_A           40 NIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSR  118 (309)
T ss_dssp             EEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTT
T ss_pred             eeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCC
Confidence            3788999999999999976 78999999987543   2355788999999999999999999999999999999999999


Q ss_pred             CChHHHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCC--cccCCCCCCCeeeCCCCCeeEccccccccccccC--
Q 002875          688 GNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPA--IPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       688 g~L~~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~--i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--  758 (872)
                      |+|.+++...     .++.++..++.|+++||+|||+.   +  |+||||||+||+++.++.+||+|||+++......  
T Consensus       119 ~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~  195 (309)
T 3p86_A          119 GSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLS  195 (309)
T ss_dssp             CBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC-----------
T ss_pred             CcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccc
Confidence            9999999763     57888899999999999999998   7  9999999999999999999999999987543321  


Q ss_pred             CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          759 GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      .....++..|.+||...+..++.++||||+||++|||+||+.||.........   ....  ........+   .....+
T Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~---~~~~--~~~~~~~~~---~~~~~~  267 (309)
T 3p86_A          196 SKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVV---AAVG--FKCKRLEIP---RNLNPQ  267 (309)
T ss_dssp             ------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHH---HHHH--HSCCCCCCC---TTSCHH
T ss_pred             cccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH---HHHH--hcCCCCCCC---ccCCHH
Confidence            11223556688899988888899999999999999999999998743321100   0000  000001111   122345


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.||++|||++|+++.|+.+.
T Consensus       268 l~~li~~~l~~dP~~Rps~~~ll~~L~~~~  297 (309)
T 3p86_A          268 VAAIIEGCWTNEPWKRPSFATIMDLLRPLI  297 (309)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            778999999999999999999999998663

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.2e-39  Score=342.09  Aligned_cols=247  Identities=20%  Similarity=0.275  Sum_probs=199.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...+++.||||++.......+.+.+|++++++++||||+++++++.+++..++||||+++|+|.
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   93 (269)
T 4hcu_A           14 FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLS   93 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHH
T ss_pred             eeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHH
Confidence            78899999999999999988999999999876666778999999999999999999999999999999999999999999


Q ss_pred             HHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCCcccc
Q 002875          692 EKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSFPAKI  765 (872)
Q Consensus       692 ~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~~~~~  765 (872)
                      +++...   .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++......   .....+.
T Consensus        94 ~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  170 (269)
T 4hcu_A           94 DYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP  170 (269)
T ss_dssp             HHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCC
T ss_pred             HHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccc
Confidence            999653   57888999999999999999999   99999999999999999999999999987543221   1111223


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||......++.++||||+||++|||+| |..||.......      ....+........+.   .....+.+++.
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~li~  241 (269)
T 4hcu_A          171 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE------VVEDISTGFRLYKPR---LASTHVYQIMN  241 (269)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHHHHHTTCCCCCCT---TSCHHHHHHHH
T ss_pred             cccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH------HHHHHhcCccCCCCC---cCCHHHHHHHH
Confidence            34778898888889999999999999999999 777775432110      011111110011111   11245778899


Q ss_pred             HcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          845 LCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      +||+.||++|||++|++++|+.+...
T Consensus       242 ~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          242 HCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHccCCcccCcCHHHHHHHHHHHHHc
Confidence            99999999999999999999987654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.6e-38  Score=359.07  Aligned_cols=349  Identities=18%  Similarity=0.162  Sum_probs=192.8

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCcccc-CccccCCCCCCEEEccCCcccccCCcccCCCCCCcEee
Q 002875           42 TSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV-PAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH  120 (872)
Q Consensus        42 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~-p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  120 (872)
                      ++|++|+|++|.+.+..|..|..+++|++|++++|.+.+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            44555555555554444444555555555555555443222 33445555555555555555444444555555555555


Q ss_pred             CccCcCCccCCcc--CCCCCCCCEEEccCccCcccCCcc-ccCCCCCcEEEeecCCCcccCCccCcCC--CCCCEEEccC
Q 002875          121 LAGNLLNDQIPAE--LGMLKTVTHMEIGYNFYQGNIPWQ-LGNMSEVQYLDIAGANLSGSIPKELSNL--TKLESLFLFR  195 (872)
Q Consensus       121 L~~n~l~~~~p~~--l~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~ls~n~l~~~~p~~l~~l--~~L~~L~L~~  195 (872)
                      |++|.+++..+..  ++.+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+  .+|+.|+++.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            5555544433322  444555555555555544444433 4455555555555555554444444433  3455555555


Q ss_pred             CCCcccCCccc--------ccCCCCCEEeCcCCCCcCcCCccccCC---CCCCEEEcccccCCCC----------CCccc
Q 002875          196 NQLAGQVPWEF--------SRVTTLKSLDLSDNRLSGPIPESFADL---KNLRLLSLMYNEMSGT----------VPESL  254 (872)
Q Consensus       196 n~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~----------~p~~l  254 (872)
                      |.+.+..+..+        ..+++|++|++++|++++..|..+..+   ++|+.|+++.|...+.          .+..+
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence            55544333221        133455555555555554444433322   4555555555433221          11111


Q ss_pred             cC--CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCC
Q 002875          255 VQ--LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSL  332 (872)
Q Consensus       255 ~~--l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L  332 (872)
                      ..  .++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.....|+.|++++|.+.+..+..+.++++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence            11  2466666666666666666666666666666666666665555566666666666666666666666667777777


Q ss_pred             cEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCC
Q 002875          333 VRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPK  390 (872)
Q Consensus       333 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~  390 (872)
                      ++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+.
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            7777777777777777777777777777777777766566667777777777777754

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=3.6e-39  Score=344.80  Aligned_cols=252  Identities=19%  Similarity=0.224  Sum_probs=189.2

Q ss_pred             hhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhc--cCCCCceeEEEEEec----CCeeE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGT--VRHKNLIRLLGFCYN----RHQAY  679 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~--l~H~niv~l~~~~~~----~~~~~  679 (872)
                      +.|.  ..+.||+|+||.||+|+. +|+.||||++....  .+.+.+|.+++..  ++||||+++++++..    ....+
T Consensus         8 ~~y~--~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A            8 RDIT--LLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD--EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             GGCE--EEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG--HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             CcEE--EEEeeccCCCcEEEEEEE-CCEEEEEEEecccc--chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence            3455  889999999999999987 79999999997543  3344445555544  899999999999764    34689


Q ss_pred             EEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHh--------hCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          680 LLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLH--------HDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH--------~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                      +||||+++|+|.++++. ..++.....++.|++.||+|||        +.   +|+||||||+||+++.++.+||+|||+
T Consensus        83 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~  159 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADLGL  159 (301)
T ss_dssp             EEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeCCC
Confidence            99999999999999976 4588999999999999999999        66   999999999999999999999999999


Q ss_pred             cccccccCC------CCcccccccCchhhhccc------CCcccccchhHHHHHHHHHcC----------CCCCCCCCCC
Q 002875          751 KYLTQLADG------SFPAKIAWTESGEFYNAM------KEEMYMDVYGFGEIILEILTN----------GRLTNAGSSL  808 (872)
Q Consensus       751 ~~~~~~~~~------~~~~~~~~~~~~e~~~~~------~~~~~~Dv~S~Gvil~el~tg----------~~p~~~~~~~  808 (872)
                      ++.......      ....++..|.+||.....      .++.++|||||||++|||+||          +.||......
T Consensus       160 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~  239 (301)
T 3q4u_A          160 AVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPN  239 (301)
T ss_dssp             CEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCS
T ss_pred             eeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCC
Confidence            865433221      112355667888887654      445789999999999999999          6666543221


Q ss_pred             CCccccccccccc--cccccCCCC--chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          809 QNKPIDGLLGEMY--NENEVGSSS--SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       809 ~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .... . ......  .......+.  ........+.+++.+||+.||++|||++|+++.|+.+
T Consensus       240 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          240 DPSF-E-DMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             SCCH-H-HHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             Ccch-h-hhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            1110 0 000000  000011111  1234567788999999999999999999999999875

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=4.2e-39  Score=346.67  Aligned_cols=242  Identities=15%  Similarity=0.222  Sum_probs=195.6

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.||+|+||.||+|... +|+.||||++..... ..+.+.+|+.++++++|||||+++++|...+..++||||+++|+
T Consensus        49 ~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~  128 (321)
T 2c30_A           49 SYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGA  128 (321)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCB
T ss_pred             ccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCC
Confidence            5678999999999999965 799999999975433 45678899999999999999999999999999999999999999


Q ss_pred             hHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCccccc
Q 002875          690 LSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKIA  766 (872)
Q Consensus       690 L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~~  766 (872)
                      |.+++.. ..++.++..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ....++.
T Consensus       129 L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~  205 (321)
T 2c30_A          129 LTDIVSQVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTP  205 (321)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCG
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCc
Confidence            9999876 468999999999999999999999   999999999999999999999999999875433221  1223556


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .|.+||......++.++|||||||++|||+||+.||.......      ....+.... .+...........+.+++.+|
T Consensus       206 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~  278 (321)
T 2c30_A          206 YWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQ------AMKRLRDSP-PPKLKNSHKVSPVLRDFLERM  278 (321)
T ss_dssp             GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHHSS-CCCCTTGGGSCHHHHHHHHHH
T ss_pred             cccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHhcCC-CCCcCccccCCHHHHHHHHHH
Confidence            6888898888888999999999999999999999987543211      011111111 000111112234577899999


Q ss_pred             ccCCCCCCCCHHHHHHH
Q 002875          847 TRSTPSDRPSMEEALKL  863 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~  863 (872)
                      |+.||++|||++|++++
T Consensus       279 l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          279 LVRDPQERATAQELLDH  295 (321)
T ss_dssp             SCSSTTTSCCHHHHHTS
T ss_pred             ccCChhhCcCHHHHhcC
Confidence            99999999999999875

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=7.2e-39  Score=358.11  Aligned_cols=251  Identities=17%  Similarity=0.136  Sum_probs=198.4

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCe
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ  677 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  677 (872)
                      ..+.+.|.  ..+.||+|+||.||+|.. .+|+.||+|++....   ...+.+.+|+.++++++|||||++++++.+++.
T Consensus         7 ~~~~~~Y~--i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   84 (444)
T 3soa_A            7 TRFTEEYQ--LFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGH   84 (444)
T ss_dssp             CHHHHHEE--EEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSE
T ss_pred             ccccCCeE--EEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCE
Confidence            44556676  889999999999999984 689999999997543   235568899999999999999999999999999


Q ss_pred             eEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC---CCCCeeEccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD---ENMEPHLAEFGFKY  752 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~---~~~~~ki~dfg~~~  752 (872)
                      .|+|||||++|+|.+.+..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++   .++.+||+|||+++
T Consensus        85 ~~lv~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~  161 (444)
T 3soa_A           85 HYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAI  161 (444)
T ss_dssp             EEEEECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred             EEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence            9999999999999999865  457888899999999999999999   999999999999998   46789999999997


Q ss_pred             cccccCCC--CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          753 LTQLADGS--FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       753 ~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      ........  ...++.+|.+||......++.++||||+||++|||++|..||.+.....      ....+.........+
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~------~~~~i~~~~~~~~~~  235 (444)
T 3soa_A          162 EVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHR------LYQQIKAGAYDFPSP  235 (444)
T ss_dssp             CCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHTCCCCCTT
T ss_pred             EecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHH------HHHHHHhCCCCCCcc
Confidence            65433221  2236677889999888889999999999999999999999997543211      011111111010111


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .......++.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          236 EWDTVTPEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             TTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            122234567889999999999999999999875

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=5e-39  Score=346.84  Aligned_cols=251  Identities=18%  Similarity=0.192  Sum_probs=199.0

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-------hHHHHHHHHHHhhccCCCCceeEEEEEe
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-------RIKIVSEFITRIGTVRHKNLIRLLGFCY  673 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~  673 (872)
                      .++.+.|.  ..+.||+|+||.||+|.. .+|+.||||.+.....       ..+.+.+|+.++++++|||||++++++.
T Consensus         7 ~~~~~~y~--~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~   84 (326)
T 2y0a_A            7 ENVDDYYD--TGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE   84 (326)
T ss_dssp             SCHHHHEE--EEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             CCcccceE--eceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            34455566  889999999999999986 5799999999975322       3567889999999999999999999999


Q ss_pred             cCCeeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC----CeeEcc
Q 002875          674 NRHQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM----EPHLAE  747 (872)
Q Consensus       674 ~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~----~~ki~d  747 (872)
                      +.+..++||||+++|+|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||+++.++    .+||+|
T Consensus        85 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~D  161 (326)
T 2y0a_A           85 NKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIID  161 (326)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECC
T ss_pred             eCCEEEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEE
Confidence            999999999999999999999753  57888999999999999999999   999999999999999877    799999


Q ss_pred             ccccccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc
Q 002875          748 FGFKYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       748 fg~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      ||+++....... ....++..|.+||......++.++||||+||++|||+||..||.......      ....+......
T Consensus       162 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~------~~~~~~~~~~~  235 (326)
T 2y0a_A          162 FGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE------TLANVSAVNYE  235 (326)
T ss_dssp             CTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH------HHHHHHHTCCC
T ss_pred             CCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH------HHHHHHhcCCC
Confidence            999976543222 22235666888999888888999999999999999999999987533111      00011000000


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ............+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  272 (326)
T 2y0a_A          236 FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  272 (326)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             cCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            0000111223467789999999999999999999875

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.9e-39  Score=346.14  Aligned_cols=245  Identities=19%  Similarity=0.262  Sum_probs=194.1

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|...    .+..||||+++..  ....+.+.+|+.++++++|||||+++++|.+.+..|+||||+
T Consensus        53 i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  132 (325)
T 3kul_A           53 IEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYM  132 (325)
T ss_dssp             EEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECC
T ss_pred             EeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCC
Confidence            7889999999999999863    4556999999754  234567889999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-  761 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-  761 (872)
                      ++|+|.++++.   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......... 
T Consensus       133 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  209 (325)
T 3kul_A          133 ENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAY  209 (325)
T ss_dssp             TTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCE
T ss_pred             CCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccccccCcccee
Confidence            99999999964   458889999999999999999999   99999999999999999999999999997654322111 


Q ss_pred             ----cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          762 ----PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       762 ----~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                          ..++..|.+||...+..++.++|||||||++|||+| |..||.......      ....+........+.   ...
T Consensus       210 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~---~~~  280 (325)
T 3kul_A          210 TTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD------VISSVEEGYRLPAPM---GCP  280 (325)
T ss_dssp             ECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH------HHHHHHTTCCCCCCT---TCC
T ss_pred             eccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH------HHHHHHcCCCCCCCC---CcC
Confidence                112335778898887788999999999999999999 888876432211      011111111011111   223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ..+.+++..||+.||++|||++|+++.|+.+.
T Consensus       281 ~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~  312 (325)
T 3kul_A          281 HALHQLMLDCWHKDRAQRPRFSQIVSVLDALI  312 (325)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            46778999999999999999999999998763

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=6.7e-39  Score=361.98  Aligned_cols=245  Identities=17%  Similarity=0.268  Sum_probs=198.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|...+++.||||+++......+.+.+|+.+|++++|||||++++++. .+..|+|||||++|+|.
T Consensus       192 ~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~L~  270 (454)
T 1qcf_A          192 LEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAKGSLL  270 (454)
T ss_dssp             EEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHH
T ss_pred             EEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCCCcHH
Confidence            77899999999999999988999999999876667788999999999999999999999986 56789999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCCccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSFPAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~~~~  764 (872)
                      ++++.    ..++.+...++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++......   ......
T Consensus       271 ~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~  347 (454)
T 1qcf_A          271 DFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKF  347 (454)
T ss_dssp             HHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSS
T ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcc
Confidence            99975    467888899999999999999999   99999999999999999999999999997643211   111112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||......++.++|||||||++|||+| |+.||.+.....      ....+......+.+.   ....++.+++
T Consensus       348 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~------~~~~i~~~~~~~~~~---~~~~~l~~li  418 (454)
T 1qcf_A          348 PIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE------VIRALERGYRMPRPE---NCPEELYNIM  418 (454)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH------HHHHHHHTCCCCCCT---TSCHHHHHHH
T ss_pred             cccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH------HHHHHHcCCCCCCCC---CCCHHHHHHH
Confidence            334678888887889999999999999999999 777776432111      011111111011111   2234677899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .+||+.||++||||+++++.|+.+..
T Consensus       419 ~~cl~~dp~~RPt~~~i~~~L~~~~~  444 (454)
T 1qcf_A          419 MRCWKNRPEERPTFEYIQSVLDDFYT  444 (454)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred             HHHccCChhHCcCHHHHHHHHHHHHh
Confidence            99999999999999999999998753

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=6.1e-39  Score=352.24  Aligned_cols=244  Identities=20%  Similarity=0.285  Sum_probs=187.0

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|+..    ++..||||+++...  ...+.+.+|+.++++++|||||+++|+|.+.+..++||||+
T Consensus        49 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~  128 (373)
T 2qol_A           49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYM  128 (373)
T ss_dssp             CCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             eeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCC
Confidence            7889999999999999864    67889999997542  34567899999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-  761 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-  761 (872)
                      ++|+|.++++.   ..++.++..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++......... 
T Consensus       129 ~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  205 (373)
T 2qol_A          129 ENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAY  205 (373)
T ss_dssp             TTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------------
T ss_pred             CCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccccCCccce
Confidence            99999999976   358889999999999999999999   99999999999999999999999999987654322111 


Q ss_pred             --c--ccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          762 --P--AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       762 --~--~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                        .  .+...|.+||......++.++|||||||++|||+| |+.||.......   ..........   .+...   ...
T Consensus       206 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~---~~~~i~~~~~---~~~~~---~~~  276 (373)
T 2qol_A          206 TTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD---VIKAVDEGYR---LPPPM---DCP  276 (373)
T ss_dssp             --------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH---HHHHHHTTEE---CCCCT---TCB
T ss_pred             eccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHHcCCC---CCCCc---ccc
Confidence              1  12234778888888889999999999999999998 888886432111   0000111111   11111   223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+.+++.+||+.||++||+++|+++.|+.+
T Consensus       277 ~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~  307 (373)
T 2qol_A          277 AALYQLMLDCWQKDRNNRPKFEQIVSILDKL  307 (373)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcChhhCcCHHHHHHHHHHH
Confidence            4677899999999999999999999999876

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=8.4e-39  Score=342.83  Aligned_cols=256  Identities=17%  Similarity=0.232  Sum_probs=193.9

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCee
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  678 (872)
                      +.+.+.|.  ..+.||+|+||.||+|...+|+.||||++.....   ..+.+.+|++++++++|||||++++++.+++..
T Consensus        17 q~l~~~y~--~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   94 (311)
T 3niz_A           17 QGLMEKYQ--KLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCL   94 (311)
T ss_dssp             ECSSCEEE--EEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCE
T ss_pred             cchHhhhH--hhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEE
Confidence            33445566  8899999999999999998899999999975332   246778999999999999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      ++|||||++ +|.+++...   .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        95 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~  170 (311)
T 3niz_A           95 TLVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFG  170 (311)
T ss_dssp             EEEEECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETT
T ss_pred             EEEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecC
Confidence            999999984 888887653   57888899999999999999999   99999999999999999999999999997654


Q ss_pred             ccCC--CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-ccccccc----------
Q 002875          756 LADG--SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GLLGEMY----------  821 (872)
Q Consensus       756 ~~~~--~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~~~~~~----------  821 (872)
                      ....  ....++.+|.+||...+ ..++.++||||+||++|||+||+.||............ .......          
T Consensus       171 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  250 (311)
T 3niz_A          171 IPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQEL  250 (311)
T ss_dssp             SCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTS
T ss_pred             CCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhcc
Confidence            2221  12234566788887754 56789999999999999999999998754322110000 0000000          


Q ss_pred             ----cccc-cCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 ----NENE-VGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 ----~~~~-~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                          +... .......    +....++.+++.+||+.||++|||++|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  301 (311)
T 3niz_A          251 PLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH  301 (311)
T ss_dssp             HHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             chhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence                0000 0000000    1123467899999999999999999999974

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=1.5e-39  Score=358.42  Aligned_cols=246  Identities=18%  Similarity=0.210  Sum_probs=194.9

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|... +|+.||||.++...  ...+.+.+|+++|++++|||||+++|+|.+++..|+|||||++|
T Consensus       118 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g  197 (377)
T 3cbl_A          118 LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG  197 (377)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             EeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCC
Confidence            7789999999999999974 79999999987542  23456788999999999999999999999999999999999999


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----CC
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----SF  761 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----~~  761 (872)
                      +|.++++.   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......    ..
T Consensus       198 ~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~  274 (377)
T 3cbl_A          198 DFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGL  274 (377)
T ss_dssp             BHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSC
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCC
Confidence            99999975   368889999999999999999999   999999999999999999999999999875332111    11


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ......|.+||......++.++|||||||++|||+| |..|+.......   .......   ....+.+..   ....+.
T Consensus       275 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~---~~~~~~~---~~~~~~~~~---~~~~l~  345 (377)
T 3cbl_A          275 RQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ---TREFVEK---GGRLPCPEL---CPDAVF  345 (377)
T ss_dssp             CEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH---HHHHHHT---TCCCCCCTT---CCHHHH
T ss_pred             CCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHHc---CCCCCCCCC---CCHHHH
Confidence            112334678888877788999999999999999999 777765432111   0000101   000111111   224577


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      +++.+||+.||++|||++|+++.|+.++.
T Consensus       346 ~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          346 RLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence            89999999999999999999999988754

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=9.6e-39  Score=338.11  Aligned_cols=245  Identities=16%  Similarity=0.190  Sum_probs=196.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|...++..||||++.......+.+.+|++++++++||||++++++|.+.+..++||||+++|+|.
T Consensus        28 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~  107 (283)
T 3gen_A           28 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLL  107 (283)
T ss_dssp             EEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHH
T ss_pred             hHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHH
Confidence            78999999999999999999999999999876666778899999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCCcccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSFPAKI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~~~~~  765 (872)
                      +++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......   .....++
T Consensus       108 ~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  184 (283)
T 3gen_A          108 NYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP  184 (283)
T ss_dssp             HHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSC
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccC
Confidence            99965   468899999999999999999999   99999999999999999999999999987543221   1111223


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||......++.++||||+||++|||+| |+.||.......   ......+.....   .+..   ....+.+++.
T Consensus       185 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~---~~~~~~~~~~~~---~~~~---~~~~l~~li~  255 (283)
T 3gen_A          185 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE---TAEHIAQGLRLY---RPHL---ASEKVYTIMY  255 (283)
T ss_dssp             GGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHHHHHTTCCCC---CCTT---CCHHHHHHHH
T ss_pred             cccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH---HHHHHhcccCCC---CCCc---CCHHHHHHHH
Confidence            44778888887788999999999999999999 888876432111   001111111110   0111   1245778999


Q ss_pred             HcccCCCCCCCCHHHHHHHHcccC
Q 002875          845 LCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +||+.||++|||++|++++|+++.
T Consensus       256 ~~l~~~p~~Rps~~~ll~~L~~~~  279 (283)
T 3gen_A          256 SCWHEKADERPTFKILLSNILDVM  279 (283)
T ss_dssp             HTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHccCChhHCcCHHHHHHHHHHHh
Confidence            999999999999999999998763

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=8.8e-39  Score=349.49  Aligned_cols=249  Identities=17%  Similarity=0.187  Sum_probs=197.9

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||++....   ...+.+.+|+.++++++|||||++++++.+++..|
T Consensus        27 ~~~~y~--~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~  104 (362)
T 2bdw_A           27 FSDNYD--VKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHY  104 (362)
T ss_dssp             HHHHEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cccCeE--EeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            445566  889999999999999986 579999999997543   23567889999999999999999999999999999


Q ss_pred             EEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC---CCeeEccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN---MEPHLAEFGFKYLT  754 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~---~~~ki~dfg~~~~~  754 (872)
                      +|||||++|+|.+++...  .++.+...++.|+++||+|||+.   +|+||||||+||+++.+   +.+||+|||+++..
T Consensus       105 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~  181 (362)
T 2bdw_A          105 LVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV  181 (362)
T ss_dssp             EEECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred             EEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence            999999999999998753  57888999999999999999999   99999999999999865   45999999999765


Q ss_pred             cccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          755 QLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       755 ~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                      ..... ....++.+|.+||+.....++.++||||+||++|||+||..||.+.....      ....+.........+...
T Consensus       182 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~~  255 (362)
T 2bdw_A          182 NDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR------LYAQIKAGAYDYPSPEWD  255 (362)
T ss_dssp             TTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHTCCCCCTTGGG
T ss_pred             cCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhCCCCCCccccc
Confidence            43222 12235667888999888888999999999999999999999987543211      011111111010111222


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....++.+++.+||+.||++|||++|++++
T Consensus       256 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          256 TVTPEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             GSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            334567899999999999999999999865

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.5e-38  Score=343.30  Aligned_cols=239  Identities=12%  Similarity=0.061  Sum_probs=193.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++..    ....+.+.+|+.++++++|||||++++++.+.+..|+||||++
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~   88 (337)
T 1o6l_A            9 YLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYAN   88 (337)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCC
Confidence            789999999999999986 57999999999753    2235667889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFP  762 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~  762 (872)
                      +|+|.+++..  ..++.+...++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  ....
T Consensus        89 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~  165 (337)
T 1o6l_A           89 GGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF  165 (337)
T ss_dssp             TCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCC
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCccccc
Confidence            9999999865  457888899999999999999999   99999999999999999999999999987532221  1223


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      .++..|.+||+..+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.++
T Consensus       166 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~~l  235 (337)
T 1o6l_A          166 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER------LFELILMEE-IRFPR---TLSPEAKSL  235 (337)
T ss_dssp             EECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TSCHHHHHH
T ss_pred             ccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHHHH
Confidence            35667888999888888999999999999999999999987543111      111111111 11111   123457789


Q ss_pred             HHHcccCCCCCCC-----CHHHHHHH
Q 002875          843 ALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +.+||+.||++||     +++|++++
T Consensus       236 i~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          236 LAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             HHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             HHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence            9999999999999     89999865

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=7.9e-39  Score=351.09  Aligned_cols=247  Identities=18%  Similarity=0.155  Sum_probs=191.8

Q ss_pred             cCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          608 FNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       608 ~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      |.+...+.||+|+||.||+|.. .+|+.||||+++... ...+.+.+|++++++++|||||+++++|.+.+..++||||+
T Consensus        89 ~~~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~  168 (373)
T 2x4f_A           89 YTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYV  168 (373)
T ss_dssp             EEEEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             eeeecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCC
Confidence            4433567899999999999985 679999999997643 34667899999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee--CCCCCeeEccccccccccccCC-
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill--~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      ++|+|.+++..   ..++.++..++.|+++||+|||+.   +|+||||||+||++  +.++.+||+|||+++....... 
T Consensus       169 ~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~  245 (373)
T 2x4f_A          169 DGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL  245 (373)
T ss_dssp             TTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBC
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccc
Confidence            99999998854   368889999999999999999999   99999999999999  6678899999999976543222 


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ....++..|.+||+.....++.++|||||||++|||+||+.||.......      .+..+.................++
T Consensus       246 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~  319 (373)
T 2x4f_A          246 KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE------TLNNILACRWDLEDEEFQDISEEA  319 (373)
T ss_dssp             CCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHTCCCSCSGGGTTSCHHH
T ss_pred             ccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhccCCCChhhhccCCHHH
Confidence            12235667888998888888999999999999999999999987543211      111111111011111112234567


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||+.||++|||++|++++
T Consensus       320 ~~li~~~L~~dp~~Rps~~e~l~h  343 (373)
T 2x4f_A          320 KEFISKLLIKEKSWRISASEALKH  343 (373)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHcCCChhhCCCHHHHhcC
Confidence            899999999999999999999874

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.3e-38  Score=362.81  Aligned_cols=247  Identities=21%  Similarity=0.251  Sum_probs=198.4

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.||+|+||.||+|+.. +|+.||||.++......+.+.+|+.+|++++|||||+++|+|.+.+..|+|||||++|+|
T Consensus       224 ~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L  303 (495)
T 1opk_A          224 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL  303 (495)
T ss_dssp             EEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred             eeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCH
Confidence            7789999999999999975 589999999987666678899999999999999999999999999999999999999999


Q ss_pred             HHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---Ccc
Q 002875          691 SEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---FPA  763 (872)
Q Consensus       691 ~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---~~~  763 (872)
                      .++++.    ..++.....++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++........   ...
T Consensus       304 ~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~  380 (495)
T 1opk_A          304 LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK  380 (495)
T ss_dssp             HHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCC
T ss_pred             HHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCc
Confidence            999974    357888999999999999999999   9999999999999999999999999999765322111   111


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      ....|.+||......++.++|||||||++|||+| |..||.......   ....+.....   ...+.   .....+.++
T Consensus       381 ~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~---~~~~~~~~~~---~~~~~---~~~~~l~~l  451 (495)
T 1opk_A          381 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---VYELLEKDYR---MERPE---GCPEKVYEL  451 (495)
T ss_dssp             CCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHHHHHTTCC---CCCCT---TCCHHHHHH
T ss_pred             CCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH---HHHHHHcCCC---CCCCC---CCCHHHHHH
Confidence            2234677888877788999999999999999999 667765432111   0011111111   11111   223467789


Q ss_pred             HHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          843 ALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      +.+||+.||++||||+|+++.|+.+...
T Consensus       452 i~~cl~~dP~~RPs~~el~~~L~~~~~~  479 (495)
T 1opk_A          452 MRACWQWNPSDRPSFAEIHQAFETMFQE  479 (495)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred             HHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999999987543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=6.2e-39  Score=349.75  Aligned_cols=246  Identities=15%  Similarity=0.165  Sum_probs=194.5

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc------hhHHHHHHHHHHhhccCCCCceeEEEEEecCCee
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  678 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++....      ...+.+.+|+.++++++|||||++++++.+++..
T Consensus        24 ~~y~--~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  101 (351)
T 3c0i_A           24 DVYE--LCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGML  101 (351)
T ss_dssp             HHEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             cceE--EeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            3455  889999999999999985 679999999996432      1356789999999999999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC---eeEcccc
Q 002875          679 YLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME---PHLAEFG  749 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~---~ki~dfg  749 (872)
                      |+|||||++|+|.+++..      ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.   +||+|||
T Consensus       102 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg  178 (351)
T 3c0i_A          102 YMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFG  178 (351)
T ss_dssp             EEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred             EEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCc
Confidence            999999999999988754      257888899999999999999999   9999999999999986654   9999999


Q ss_pred             ccccccccCC--CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          750 FKYLTQLADG--SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       750 ~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      +++.......  ....++.+|.+||......++.++||||+||++|||+||+.||.....       .....+.......
T Consensus       179 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-------~~~~~i~~~~~~~  251 (351)
T 3c0i_A          179 VAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE-------RLFEGIIKGKYKM  251 (351)
T ss_dssp             TCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH-------HHHHHHHHTCCCC
T ss_pred             ceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH-------HHHHHHHcCCCCC
Confidence            9976543221  122356678899998888889999999999999999999999875321       0111111111000


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..........++.+++.+||+.||++|||+.|++++
T Consensus       252 ~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  287 (351)
T 3c0i_A          252 NPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH  287 (351)
T ss_dssp             CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            011111223567899999999999999999999864

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-38  Score=341.35  Aligned_cols=238  Identities=16%  Similarity=0.124  Sum_probs=191.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|+.++++++|||||++++++.+++..++||||+ 
T Consensus        13 i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-   91 (336)
T 3h4j_B           13 IRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-   91 (336)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-
T ss_pred             EEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-
Confidence            889999999999999995 789999999997532    12456889999999999999999999999999999999999 


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCcc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPA  763 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~~  763 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++........ ....
T Consensus        92 ~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~  168 (336)
T 3h4j_B           92 GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSC  168 (336)
T ss_dssp             CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCT
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCCccccccc
Confidence            7899998854  568889999999999999999999   999999999999999999999999999876543321 2233


Q ss_pred             cccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      ++..|.+||...+..+ +.++||||+||++|||+||+.||.+......      ...+.... ...++   .....+.++
T Consensus       169 gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~------~~~i~~~~-~~~p~---~~s~~~~~l  238 (336)
T 3h4j_B          169 GSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL------FKKVNSCV-YVMPD---FLSPGAQSL  238 (336)
T ss_dssp             TSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC------BCCCCSSC-CCCCT---TSCHHHHHH
T ss_pred             CCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH------HHHHHcCC-CCCcc---cCCHHHHHH
Confidence            5667888888776554 6789999999999999999999975432211      11111100 00111   122457789


Q ss_pred             HHHcccCCCCCCCCHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+||+.||++|||++|++++
T Consensus       239 i~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          239 IRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             HHTTSCSSGGGSCCHHHHTTC
T ss_pred             HHHHcCCChhHCcCHHHHHhC
Confidence            999999999999999999864

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.6e-38  Score=338.87  Aligned_cols=254  Identities=13%  Similarity=0.113  Sum_probs=196.6

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCC--eeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH--QAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lv~ey~  685 (872)
                      ...+.||+|+||.||+|.. .+|+.||||++....  ...+.+.+|++++++++|||||++++++...+  ..++||||+
T Consensus        12 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~   91 (319)
T 4euu_A           12 LLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFC   91 (319)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             EEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCC
Confidence            3788999999999999986 469999999997533  23567789999999999999999999998755  789999999


Q ss_pred             CCCChHHHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee----CCCCCeeEccccccccccc
Q 002875          686 PNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF----DENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       686 ~~g~L~~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill----~~~~~~ki~dfg~~~~~~~  756 (872)
                      ++|+|.+++...     .++.+...++.|+++||+|||+.   +|+||||||+||++    +.++.+||+|||+++....
T Consensus        92 ~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~  168 (319)
T 4euu_A           92 PCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (319)
T ss_dssp             TTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCT
T ss_pred             CCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCceecCC
Confidence            999999999762     68899999999999999999999   99999999999999    7888899999999976543


Q ss_pred             cCCC-CcccccccCchhhhc--------ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc--ccccccc------
Q 002875          757 ADGS-FPAKIAWTESGEFYN--------AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP--IDGLLGE------  819 (872)
Q Consensus       757 ~~~~-~~~~~~~~~~~e~~~--------~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~--~~~~~~~------  819 (872)
                      .... ...++..|.+||...        ...++.++|||||||++|||+||+.||..........  .......      
T Consensus       169 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~  248 (319)
T 4euu_A          169 DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAI  248 (319)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCC
T ss_pred             CCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccc
Confidence            3222 222555677888765        4578889999999999999999999986432211100  0000000      


Q ss_pred             ---------c--ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          820 ---------M--YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       820 ---------~--~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                               .  ..................+.+++.+||+.||++|||++|++++.++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          249 SGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             EEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             hhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence                     0  00000111122345566788999999999999999999999998643

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.5e-38  Score=347.69  Aligned_cols=246  Identities=16%  Similarity=0.127  Sum_probs=187.1

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ...+.||+|+||.||++.. .+|+.||||++.......+.+.+|+.++++++|||||++++++.+++..|+|||||++|+
T Consensus        23 ~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~  102 (361)
T 3uc3_A           23 DFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGE  102 (361)
T ss_dssp             EEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCB
T ss_pred             EEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCC
Confidence            3889999999999999986 489999999998765556778899999999999999999999999999999999999999


Q ss_pred             hHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC--eeEccccccccccccC-CCCccc
Q 002875          690 LSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME--PHLAEFGFKYLTQLAD-GSFPAK  764 (872)
Q Consensus       690 L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~--~ki~dfg~~~~~~~~~-~~~~~~  764 (872)
                      |.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.  +||+|||+++...... .....+
T Consensus       103 L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  179 (361)
T 3uc3_A          103 LYERICNAGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVG  179 (361)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC--------------
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcC
Confidence            9999864  568889999999999999999999   9999999999999987765  9999999987432221 122235


Q ss_pred             ccccCchhhhcccCCccc-ccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMY-MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~-~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      +.+|.+||...+..+..+ +||||+||++|||+||+.||.........  ......+......  .+........+.+++
T Consensus       180 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~s~~~~~li  255 (361)
T 3uc3_A          180 TPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDY--RKTIQRILSVKYS--IPDDIRISPECCHLI  255 (361)
T ss_dssp             -CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCH--HHHHHHHHTTCCC--CCTTSCCCHHHHHHH
T ss_pred             CCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHH--HHHHHHHhcCCCC--CCCcCCCCHHHHHHH
Confidence            667888898876666544 89999999999999999999754332211  1111111111100  000011224677899


Q ss_pred             HHcccCCCCCCCCHHHHHHH
Q 002875          844 LLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+||+.||++|||++|++++
T Consensus       256 ~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          256 SRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             HHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHccCChhHCcCHHHHHhC
Confidence            99999999999999999875

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=350.06  Aligned_cols=245  Identities=16%  Similarity=0.169  Sum_probs=192.2

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|..      .+++.||||++...  ......+.+|+.++++++|||||++++++.+.+..++|||
T Consensus        75 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e  154 (367)
T 3l9p_A           75 LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLE  154 (367)
T ss_dssp             EEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEE
Confidence            788999999999999984      35779999999653  2345568889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC---------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC---CeeEcccccc
Q 002875          684 YLPNGNLSEKIRT---------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM---EPHLAEFGFK  751 (872)
Q Consensus       684 y~~~g~L~~~l~~---------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~---~~ki~dfg~~  751 (872)
                      ||++|+|.+++..         ..++.+.+.++.|+++||+|||+.   +|+||||||+||+++.++   .+||+|||++
T Consensus       155 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a  231 (367)
T 3l9p_A          155 LMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMA  231 (367)
T ss_dssp             CCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCHHH
T ss_pred             eCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEECCCccc
Confidence            9999999999964         257889999999999999999999   999999999999999554   5999999998


Q ss_pred             ccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccccc
Q 002875          752 YLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       752 ~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      +.......    ....++..|.+||......++.++|||||||++|||+| |..||.......      ....+......
T Consensus       232 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~------~~~~i~~~~~~  305 (367)
T 3l9p_A          232 RDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE------VLEFVTSGGRM  305 (367)
T ss_dssp             HHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH------HHHHHHTTCCC
T ss_pred             cccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH------HHHHHHcCCCC
Confidence            75422211    11223456788898888889999999999999999999 777776432111      01111111101


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ..+.   .....+.+++.+||+.||++|||++|++++|+.+.
T Consensus       306 ~~~~---~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~  344 (367)
T 3l9p_A          306 DPPK---NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  344 (367)
T ss_dssp             CCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCc---cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence            1111   12345778999999999999999999999997653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.6e-37  Score=347.61  Aligned_cols=289  Identities=23%  Similarity=0.295  Sum_probs=147.7

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCC-------------cEEECcCCcCccccC
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNL-------------LVLDAFSNSFSGSVP   83 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------------~~LdL~~n~l~~~~p   83 (872)
                      .+.|++|++++|.+ +.+|.+|.++++|++|++++|.+.+.+|.+++.+++|             ++|++++|.+++ +|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence            56788889998888 6778888889999999999888888888888888765             777777777664 33


Q ss_pred             ccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCC
Q 002875           84 AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSE  163 (872)
Q Consensus        84 ~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~  163 (872)
                      ..   .++|++|++++|.+++ +|..   +++|++|++++|.+++. |..   .++|++|++++|.+.+ +| .++++++
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~  154 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF  154 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence            31   2567777777777765 4543   35677777777766542 111   1455666666655554 44 3555556


Q ss_pred             CcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEccc
Q 002875          164 VQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMY  243 (872)
Q Consensus       164 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  243 (872)
                      |++|++++|.+++ +|..+   .+|++|++++|++++ +| .+..+++|++|++++|++++ +|..   .++|+.|++++
T Consensus       155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~  224 (454)
T 1jl5_A          155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN  224 (454)
T ss_dssp             CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred             CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence            6666666655553 33322   355555555555554 23 35555555555555555553 2221   13555555555


Q ss_pred             ccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCC
Q 002875          244 NEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLS  323 (872)
Q Consensus       244 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~  323 (872)
                      |.+. .+| .+..+++|++|++++|++++ +|..   ..+|+.|++++|.+.+ +|..                      
T Consensus       225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~----------------------  275 (454)
T 1jl5_A          225 NILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL----------------------  275 (454)
T ss_dssp             SCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC----------------------
T ss_pred             CcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc----------------------
Confidence            5555 333 25555555555555555553 2221   2445555555555442 2221                      


Q ss_pred             CCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCC
Q 002875          324 PSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG  368 (872)
Q Consensus       324 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  368 (872)
                           +++|+.|++++|++++.. .   -.++|++|++++|.+.+
T Consensus       276 -----~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~  311 (454)
T 1jl5_A          276 -----PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS  311 (454)
T ss_dssp             -----CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE
T ss_pred             -----cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc
Confidence                 245666666666665421 1   01456666666666553

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.7e-38  Score=337.65  Aligned_cols=251  Identities=17%  Similarity=0.173  Sum_probs=196.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||.+...    ....+.+.+|+.++++++|||||++++++.+++..|+||||++
T Consensus        15 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~   94 (294)
T 4eqm_A           15 IVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIE   94 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCC
Confidence            889999999999999985 57899999998542    2235678899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---CC
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---SF  761 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~~  761 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......   ..
T Consensus        95 g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  171 (294)
T 4eqm_A           95 GPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNH  171 (294)
T ss_dssp             SCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC----------
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCc
Confidence            9999999975  468899999999999999999999   999999999999999999999999999876433221   11


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|.+||...+..++.++||||+||++|||+||+.||........  ..............   ....+....+.+
T Consensus       172 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~l~~  246 (294)
T 4eqm_A          172 VLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSI--AIKHIQDSVPNVTT---DVRKDIPQSLSN  246 (294)
T ss_dssp             ---CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHH--HHHHHSSCCCCHHH---HSCTTSCHHHHH
T ss_pred             cccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHhhccCCCcch---hcccCCCHHHHH
Confidence            2245668888988888889999999999999999999999875432110  00000000000000   000122346778


Q ss_pred             HHHHcccCCCCCCC-CHHHHHHHHcccCCC
Q 002875          842 VALLCTRSTPSDRP-SMEEALKLLSGLKPH  870 (872)
Q Consensus       842 l~~~cl~~dp~~Rp-t~~~v~~~L~~~~~~  870 (872)
                      ++.+|++.||++|| +++++.+.|+.+..+
T Consensus       247 li~~~l~~dp~~R~~~~~~l~~~l~~~~~~  276 (294)
T 4eqm_A          247 VILRATEKDKANRYKTIQEMKDDLSSVLHE  276 (294)
T ss_dssp             HHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred             HHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence            99999999999998 899999999876543

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=8e-39  Score=351.25  Aligned_cols=249  Identities=21%  Similarity=0.225  Sum_probs=195.0

Q ss_pred             hcCcchhhhccCCCCCceeeee------cCCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCC-
Q 002875          607 SFNSTECEEAARPQSAAGCKAV------LPTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRH-  676 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~------~~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~-  676 (872)
                      .|.  ..+.||+|+||.||+|.      ..+|+.||||+++...  ...+.+.+|+++++++ +|||||+++++|.+.+ 
T Consensus        23 ~y~--~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~  100 (359)
T 3vhe_A           23 RLK--LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG  100 (359)
T ss_dssp             GEE--EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS
T ss_pred             cee--eceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCC
Confidence            355  88999999999999996      3567899999997543  2356788999999999 7999999999998755 


Q ss_pred             eeEEEEcccCCCChHHHhhCC-----------------------------------------------------------
Q 002875          677 QAYLLYDYLPNGNLSEKIRTK-----------------------------------------------------------  697 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~~-----------------------------------------------------------  697 (872)
                      ..++|||||++|+|.++++..                                                           
T Consensus       101 ~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (359)
T 3vhe_A          101 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE  180 (359)
T ss_dssp             CCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------------
T ss_pred             ceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcc
Confidence            489999999999999999753                                                           


Q ss_pred             ---------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----CCccc
Q 002875          698 ---------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----SFPAK  764 (872)
Q Consensus       698 ---------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----~~~~~  764 (872)
                               .++...+.++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......    ....+
T Consensus       181 ~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~  257 (359)
T 3vhe_A          181 APEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARL  257 (359)
T ss_dssp             ---CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEE
T ss_pred             cccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCC
Confidence                     56778889999999999999999   999999999999999999999999999975432221    11224


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      +..|.+||......++.++|||||||++|||+| |..||........  ......   .......+.   ....++.+++
T Consensus       258 t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~--~~~~~~---~~~~~~~~~---~~~~~l~~li  329 (359)
T 3vhe_A          258 PLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE--FCRRLK---EGTRMRAPD---YTTPEMYQTM  329 (359)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH--HHHHHH---HTCCCCCCT---TCCHHHHHHH
T ss_pred             CceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH--HHHHHH---cCCCCCCCC---CCCHHHHHHH
Confidence            455788898888888999999999999999999 8888864332111  000000   000011111   1224577889


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcccC
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ..||+.||++|||++|++++|+.+.
T Consensus       330 ~~~l~~dP~~Rps~~ell~~L~~~~  354 (359)
T 3vhe_A          330 LDCWHGEPSQRPTFSELVEHLGNLL  354 (359)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHccCChhhCCCHHHHHHHHHHHH
Confidence            9999999999999999999998763

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=1e-38  Score=335.60  Aligned_cols=247  Identities=21%  Similarity=0.223  Sum_probs=186.1

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccc-----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA-----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|.. +|+.||||++....     ...+.+.+|++++++++||||++++++|.+++..++||||++
T Consensus        11 ~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   89 (271)
T 3dtc_A           11 LEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFAR   89 (271)
T ss_dssp             EEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCT
T ss_pred             eeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCC
Confidence            788999999999999997 48999999986532     224678899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC--------CCCeeEcccccccccccc
Q 002875          687 NGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE--------NMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       687 ~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~--------~~~~ki~dfg~~~~~~~~  757 (872)
                      +|+|.+++.. ..++.....++.|+++||+|||+....+|+||||||+||+++.        ++.+||+|||+++.....
T Consensus        90 ~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~  169 (271)
T 3dtc_A           90 GGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRT  169 (271)
T ss_dssp             TEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------
T ss_pred             CCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccc
Confidence            9999999975 4588889999999999999999983223999999999999986        678999999998765433


Q ss_pred             CCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          758 DGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       758 ~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      ......++..|.+||...+..++.++||||+||++|||+||+.||........  ..........   ...+   .....
T Consensus       170 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~--~~~~~~~~~~---~~~~---~~~~~  241 (271)
T 3dtc_A          170 TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV--AYGVAMNKLA---LPIP---STCPE  241 (271)
T ss_dssp             ------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH--HHHHHTSCCC---CCCC---TTCCH
T ss_pred             cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHhhhcCCCC---CCCC---cccCH
Confidence            33333455668888988888889999999999999999999999875332110  0000000000   0011   11234


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+.+++.+||+.||++|||++|++++|+.+
T Consensus       242 ~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          242 PFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            577899999999999999999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=2.4e-38  Score=356.77  Aligned_cols=243  Identities=19%  Similarity=0.232  Sum_probs=193.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCC-eeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-QAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-~~~lv~ey~~~g~L  690 (872)
                      ..+.||+|+||.||+|.. .|+.||||.++... ..+.+.+|+++|++++|||||+++++|.+.+ ..|+|||||++|+|
T Consensus       197 ~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L  274 (450)
T 1k9a_A          197 LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL  274 (450)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT-TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBH
T ss_pred             EEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch-HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcH
Confidence            778999999999999987 48899999997543 4567889999999999999999999987665 78999999999999


Q ss_pred             HHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccc
Q 002875          691 SEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA  766 (872)
Q Consensus       691 ~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~  766 (872)
                      .++++..    .++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++......... ....
T Consensus       275 ~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~-~~~~  350 (450)
T 1k9a_A          275 VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTG-KLPV  350 (450)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC-------CCCT
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCC-CCCc
Confidence            9999752    47888899999999999999999   99999999999999999999999999987543222111 2234


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .|.+||......++.++|||||||++|||+| |+.||........      ...+........+.   .....+.+++.+
T Consensus       351 ~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~------~~~i~~~~~~~~p~---~~~~~l~~li~~  421 (450)
T 1k9a_A          351 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV------VPRVEKGYKMDAPD---GCPPAVYDVMKN  421 (450)
T ss_dssp             TTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH------HHHHHTTCCCCCCT---TCCHHHHHHHHH
T ss_pred             ceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH------HHHHHcCCCCCCCC---cCCHHHHHHHHH
Confidence            4678888888889999999999999999999 8877764332111      11111111011111   223467789999


Q ss_pred             cccCCCCCCCCHHHHHHHHcccCC
Q 002875          846 CTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ||+.||++|||++|+++.|+.+..
T Consensus       422 cl~~dp~~Rpt~~~l~~~L~~i~~  445 (450)
T 1k9a_A          422 CWHLDAATRPTFLQLREQLEHIRT  445 (450)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HcCCChhHCcCHHHHHHHHHHHHH
Confidence            999999999999999999987754

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=346.76  Aligned_cols=247  Identities=17%  Similarity=0.148  Sum_probs=183.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      +.|.  ..+.||+|+||.||+|... +|+.||||+++... ..+.+.+|++++++++|||||+++++|.+++..++||||
T Consensus        53 ~~y~--~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  129 (349)
T 2w4o_A           53 DFFE--VESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL  129 (349)
T ss_dssp             GTEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CcEE--EeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence            4455  7889999999999999964 68899999997543 345678899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEccccccccccccCC
Q 002875          685 LPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       685 ~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~dfg~~~~~~~~~~  759 (872)
                      +++|+|.+++...  .++.+...++.|+++||+|||+.   +|+||||||+||+++.   ++.+||+|||+++.......
T Consensus       130 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~  206 (349)
T 2w4o_A          130 VTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL  206 (349)
T ss_dssp             CCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC----------
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccCcccc
Confidence            9999999999764  57888999999999999999999   9999999999999975   88999999999876543221


Q ss_pred             -CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          760 -SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       ....++..|.+||+..+..++.++|||||||++|||+||+.||........     ....+.........+.......+
T Consensus       207 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~  281 (349)
T 2w4o_A          207 MKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQF-----MFRRILNCEYYFISPWWDEVSLN  281 (349)
T ss_dssp             ------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHH-----HHHHHHTTCCCCCTTTTTTSCHH
T ss_pred             cccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHH-----HHHHHHhCCCccCCchhhhCCHH
Confidence             122355668889998888889999999999999999999999875432110     01111111100011111223356


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+++.+||+.||++|||++|++++
T Consensus       282 ~~~li~~~L~~dP~~Rpt~~e~l~h  306 (349)
T 2w4o_A          282 AKDLVRKLIVLDPKKRLTTFQALQH  306 (349)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHccCChhhCcCHHHHhcC
Confidence            7899999999999999999999875

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=6.5e-39  Score=341.54  Aligned_cols=252  Identities=17%  Similarity=0.286  Sum_probs=192.8

Q ss_pred             hhhhccCCCCCceeeeec-----CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-----PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-----~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|..     .+|+.||||++.... ...+.+.+|++++++++|||||+++++|...  ...++|||
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   93 (295)
T 3ugc_A           14 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIME   93 (295)
T ss_dssp             EEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEE
T ss_pred             hhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEE
Confidence            889999999999999973     578999999997543 3356788999999999999999999999653  56899999


Q ss_pred             ccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          684 YLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       684 y~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      |+++|+|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... 
T Consensus        94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  170 (295)
T 3ugc_A           94 YLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEF  170 (295)
T ss_dssp             CCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC--------
T ss_pred             eCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccccccCCcce
Confidence            9999999999965   368889999999999999999999   999999999999999999999999999976533221 


Q ss_pred             ----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCC---------CCCcccc-ccccccccccc
Q 002875          760 ----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSS---------LQNKPID-GLLGEMYNENE  825 (872)
Q Consensus       760 ----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~---------~~~~~~~-~~~~~~~~~~~  825 (872)
                          ....+..+|.+||......++.++|||||||++|||+||..|+.....         ....... ...........
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (295)
T 3ugc_A          171 FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGR  250 (295)
T ss_dssp             -----CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCC
T ss_pred             eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCc
Confidence                111234457788888888889999999999999999999888753210         0000000 00000001111


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .+.+   .....++.+++.+||+.||++|||++|+++.|+.++.
T Consensus       251 ~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~  291 (295)
T 3ugc_A          251 LPRP---DGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  291 (295)
T ss_dssp             CCCC---TTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCC---cCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence            1111   1223567889999999999999999999999987754

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=2.9e-38  Score=342.83  Aligned_cols=244  Identities=16%  Similarity=0.201  Sum_probs=190.9

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCC----
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH----  676 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----  676 (872)
                      ..+.|.  ..+.||+|+||.||+|+.. +|+.||||++....  ...+.+.+|++++++++|||||+++++|.+.+    
T Consensus         4 ~~~~y~--~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   81 (332)
T 3qd2_B            4 YLTDFE--PIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKW   81 (332)
T ss_dssp             HHHHEE--EEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHH
T ss_pred             hhhcCc--eeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchh
Confidence            345566  8899999999999999974 89999999997533  34677899999999999999999999986543    


Q ss_pred             -----------------------------------------------------eeEEEEcccCCCChHHHhhCCC-----
Q 002875          677 -----------------------------------------------------QAYLLYDYLPNGNLSEKIRTKR-----  698 (872)
Q Consensus       677 -----------------------------------------------------~~~lv~ey~~~g~L~~~l~~~~-----  698 (872)
                                                                           ..++|||||++|+|.+++....     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  161 (332)
T 3qd2_B           82 QEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDR  161 (332)
T ss_dssp             HHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGS
T ss_pred             hhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccch
Confidence                                                                 3799999999999999998643     


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--------------CCCccc
Q 002875          699 DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--------------GSFPAK  764 (872)
Q Consensus       699 ~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--------------~~~~~~  764 (872)
                      .+...+.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......              .....+
T Consensus       162 ~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~g  238 (332)
T 3qd2_B          162 EHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVG  238 (332)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-
T ss_pred             hhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCC
Confidence            4566789999999999999999   99999999999999999999999999987654321              111235


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||...+..++.++||||+||++|||+||..|+....        .........   ..+.........+.+++.
T Consensus       239 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~li~  307 (332)
T 3qd2_B          239 TKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERV--------RIITDVRNL---KFPLLFTQKYPQEHMMVQ  307 (332)
T ss_dssp             CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHH--------HHHHHHHTT---CCCHHHHHHCHHHHHHHH
T ss_pred             CcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHH--------HHHHHhhcc---CCCcccccCChhHHHHHH
Confidence            566888998888888999999999999999999865532110        000011110   112222344456789999


Q ss_pred             HcccCCCCCCCCHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +||+.||++|||++|++++
T Consensus       308 ~~l~~~p~~Rps~~~~l~~  326 (332)
T 3qd2_B          308 DMLSPSPTERPEATDIIEN  326 (332)
T ss_dssp             HHHCSSGGGSCCHHHHHHS
T ss_pred             HHccCCCCcCCCHHHHhhc
Confidence            9999999999999999875

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.6e-37  Score=333.00  Aligned_cols=248  Identities=23%  Similarity=0.368  Sum_probs=196.8

Q ss_pred             hhccCCCCCceeeeecCCCcEEEEEEeecc-----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          614 EEAARPQSAAGCKAVLPTGITVSVKKIEWG-----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~g~~vavK~~~~~-----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      +.||+|+||.||+|.. +|+.||||++...     ....+.+.+|+.++++++||||+++++++.+.+..++||||+++|
T Consensus        37 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  115 (307)
T 2nru_A           37 NKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNG  115 (307)
T ss_dssp             CEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             CccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCC
Confidence            7899999999999987 7899999998642     123567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----
Q 002875          689 NLSEKIRT-----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----  759 (872)
Q Consensus       689 ~L~~~l~~-----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----  759 (872)
                      +|.+++..     ..++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......    
T Consensus       116 ~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  192 (307)
T 2nru_A          116 SLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMT  192 (307)
T ss_dssp             BHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEEC
T ss_pred             cHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcCCCcEEEeecccccccccccccccc
Confidence            99999863     368899999999999999999999   999999999999999999999999999875433211    


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-c-------ccccccccccccCCCCc
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-D-------GLLGEMYNENEVGSSSS  831 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~  831 (872)
                      ....++..|.+||...+ .++.++||||+||++|||+||..||........... .       ..+....+..   ....
T Consensus       193 ~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  268 (307)
T 2nru_A          193 SRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKK---MNDA  268 (307)
T ss_dssp             SSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSS---CSCC
T ss_pred             cccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhcccc---cccc
Confidence            11224556778887654 467889999999999999999999875433221100 0       0001111111   1122


Q ss_pred             hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          832 LQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       832 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .......+.+++.+||+.||++|||++|++++|+.++.
T Consensus       269 ~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          269 DSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             CHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             chHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            34556778899999999999999999999999998764

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-38  Score=349.40  Aligned_cols=250  Identities=18%  Similarity=0.190  Sum_probs=198.2

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      ++.+.|.  ..+.||+|+||.||+|.. .+|+.||+|.+.... .....+.+|++++++++|||||++++++.+.+..++
T Consensus        48 ~~~~~y~--i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l  125 (387)
T 1kob_A           48 SVYDYYD--ILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVL  125 (387)
T ss_dssp             CGGGTEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEE
T ss_pred             ccccceE--EEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEE
Confidence            3445566  889999999999999986 578999999997543 345678899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC--CCCeeEcccccccccc
Q 002875          681 LYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE--NMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~--~~~~ki~dfg~~~~~~  755 (872)
                      |||||++|+|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.  ++.+||+|||+++...
T Consensus       126 v~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~  202 (387)
T 1kob_A          126 ILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLN  202 (387)
T ss_dssp             EEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred             EEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecC
Confidence            9999999999999975   357889999999999999999999   9999999999999974  4679999999997654


Q ss_pred             ccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          756 LADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       756 ~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      ..... ...++..|.+||+.....++.++||||+||++|||+||..||.......      ....+..............
T Consensus       203 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~~~  276 (387)
T 1kob_A          203 PDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE------TLQNVKRCDWEFDEDAFSS  276 (387)
T ss_dssp             TTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH------HHHHHHHCCCCCCSSTTTT
T ss_pred             CCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCCCCCcccccc
Confidence            32211 1235666888999888888999999999999999999999987543211      0011110000000111122


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...++.+++.+||+.||++|||++|++++
T Consensus       277 ~s~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          277 VSPEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             SCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            33567899999999999999999999875

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6e-38  Score=341.11  Aligned_cols=264  Identities=19%  Similarity=0.223  Sum_probs=191.7

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecC----Ce
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR----HQ  677 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~----~~  677 (872)
                      ..+.+.|.  ..+.||+|+||.||+|+.. |+.||||++............|+.....++|||||++++++...    +.
T Consensus        33 ~~~~~~y~--~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  109 (337)
T 3mdy_A           33 RTIAKQIQ--MVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ  109 (337)
T ss_dssp             TTHHHHCE--EEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred             cccccceE--EEeEeecCCCeEEEEEEEC-CceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence            33455676  8899999999999999874 99999999975433332333333334445999999999999876    68


Q ss_pred             eEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCC-----CCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDC-----YPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~-----~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      .|+||||+++|+|.++++. ..++.+...++.|++.||+|||+.+     .++|+||||||+||+++.++.+||+|||++
T Consensus       110 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a  189 (337)
T 3mdy_A          110 LYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA  189 (337)
T ss_dssp             EEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred             eEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCc
Confidence            9999999999999999975 4588899999999999999999762     458999999999999999999999999998


Q ss_pred             ccccccCCC------CcccccccCchhhhcccCCccc------ccchhHHHHHHHHHcCCCC----------CCCCCCCC
Q 002875          752 YLTQLADGS------FPAKIAWTESGEFYNAMKEEMY------MDVYGFGEIILEILTNGRL----------TNAGSSLQ  809 (872)
Q Consensus       752 ~~~~~~~~~------~~~~~~~~~~~e~~~~~~~~~~------~Dv~S~Gvil~el~tg~~p----------~~~~~~~~  809 (872)
                      +........      ...++..|.+||..........      +|||||||++|||+||..|          +.......
T Consensus       190 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~  269 (337)
T 3mdy_A          190 VKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSD  269 (337)
T ss_dssp             EECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS
T ss_pred             eeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCC
Confidence            654322211      2235566788888766554444      8999999999999999444          33221111


Q ss_pred             Ccccccccccccc-cc-ccCCCC--chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          810 NKPIDGLLGEMYN-EN-EVGSSS--SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       810 ~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      . .. ........ .. ....+.  ...+...++.+++.+||+.||++|||++|++++|+.+...
T Consensus       270 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~  332 (337)
T 3mdy_A          270 P-SY-EDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES  332 (337)
T ss_dssp             C-CH-HHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             C-ch-hhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhh
Confidence            0 00 00000000 00 000011  1235567788999999999999999999999999987543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=2.6e-38  Score=356.68  Aligned_cols=245  Identities=17%  Similarity=0.216  Sum_probs=193.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|....+..||||+++......+.+.+|+++|++++|||||++++++.+ +..|+|||||++|+|.
T Consensus       188 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gsL~  266 (452)
T 1fmk_A          188 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLL  266 (452)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHH
T ss_pred             eeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcCCCHH
Confidence            778899999999999999888899999998766667789999999999999999999999976 6789999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---ccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~  764 (872)
                      ++++.    ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.........   ..+
T Consensus       267 ~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~  343 (452)
T 1fmk_A          267 DFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF  343 (452)
T ss_dssp             HHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC--------------C
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcc
Confidence            99974    368889999999999999999999   99999999999999999999999999997653322111   112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||......++.++|||||||++|||+| |+.||.+.....      ....+......+.++   .....+.+++
T Consensus       344 ~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~------~~~~i~~~~~~~~~~---~~~~~l~~li  414 (452)
T 1fmk_A          344 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE------VLDQVERGYRMPCPP---ECPESLHDLM  414 (452)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH------HHHHHHTTCCCCCCT---TSCHHHHHHH
T ss_pred             cccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH------HHHHHHcCCCCCCCC---CCCHHHHHHH
Confidence            334677888877788999999999999999999 777775432111      111111111011111   2234677899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .+||+.||++|||++++++.|+.+..
T Consensus       415 ~~cl~~dP~~Rpt~~~l~~~L~~~~~  440 (452)
T 1fmk_A          415 CQCWRKEPEERPTFEYLQAFLEDYFT  440 (452)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHTTTS
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHhc
Confidence            99999999999999999999987743

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=7.9e-38  Score=342.42  Aligned_cols=244  Identities=16%  Similarity=0.189  Sum_probs=193.2

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      .|.  ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|+.++++++|||||+++++|.+.+..|+|
T Consensus        16 ~y~--i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           16 HFE--ILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GEE--EEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HeE--EEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            355  889999999999999985 578999999997532    2356788899999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          682 YDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      |||+++|+|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        94 ~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  170 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ  170 (384)
T ss_dssp             ECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCC
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCCCc
Confidence            9999999999999864  57888899999999999999999   999999999999999999999999999976543222


Q ss_pred             -CCcccccccCchhhhcc---cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          760 -SFPAKIAWTESGEFYNA---MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~---~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                       ....++..|.+||++..   ..++.++||||+||++|||+||+.||...........   ...+.... ...+.   ..
T Consensus       171 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~---~~~~~~~~-~~~p~---~~  243 (384)
T 4fr4_A          171 ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEI---VHTFETTV-VTYPS---AW  243 (384)
T ss_dssp             BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHH---HHHHHHCC-CCCCT---TS
T ss_pred             eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHH---HHHHhhcc-cCCCC---cC
Confidence             22335667888888753   3578899999999999999999999974432211111   11111110 11111   12


Q ss_pred             HHHHHHHHHHcccCCCCCCCC-HHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPS-MEEALK  862 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt-~~~v~~  862 (872)
                      ...+.+++.+||+.||++||+ ++++.+
T Consensus       244 s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          244 SQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             CHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            346788999999999999998 777764

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.7e-38  Score=347.25  Aligned_cols=244  Identities=21%  Similarity=0.248  Sum_probs=194.1

Q ss_pred             hhhhccCCCCCceeeeec--------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL--------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.||+|+||.||+|..        .+++.||||+++...  ...+.+.+|+++++++ +|||||+++++|.+++..++
T Consensus        73 i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~l  152 (382)
T 3tt0_A           73 LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV  152 (382)
T ss_dssp             EEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             eeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEE
Confidence            788999999999999974        334689999997543  2356788999999999 89999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          681 LYDYLPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      ||||+++|+|.+++...                  .++.+++.++.|++.||+|||+.   +|+||||||+||+++.++.
T Consensus       153 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~  229 (382)
T 3tt0_A          153 IVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNV  229 (382)
T ss_dssp             EEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCC
T ss_pred             EEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEEcCCCc
Confidence            99999999999999642                  57889999999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccc
Q 002875          743 PHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~  817 (872)
                      +||+|||+++.......    ....++..|.+||...+..++.++|||||||++|||+| |+.||.......      ..
T Consensus       230 ~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~------~~  303 (382)
T 3tt0_A          230 MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE------LF  303 (382)
T ss_dssp             EEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH------HH
T ss_pred             EEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH------HH
Confidence            99999999975433211    11123445788898888888999999999999999999 777776432110      01


Q ss_pred             cccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          818 GEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+........+.   ....++.+++.+||+.||++|||++|++++|+.+
T Consensus       304 ~~~~~~~~~~~~~---~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  350 (382)
T 3tt0_A          304 KLLKEGHRMDKPS---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  350 (382)
T ss_dssp             HHHHTTCCCCCCS---SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCc---cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            1111110011111   1234577899999999999999999999999866

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=3e-38  Score=331.24  Aligned_cols=247  Identities=20%  Similarity=0.265  Sum_probs=198.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...+++.||||++.......+.+.+|++++++++||||+++++++.+++..++||||+++|+|.
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   91 (267)
T 3t9t_A           12 FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLS   91 (267)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHH
T ss_pred             eeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHH
Confidence            78899999999999999888999999999876666678899999999999999999999999999999999999999999


Q ss_pred             HHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCCcccc
Q 002875          692 EKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSFPAKI  765 (872)
Q Consensus       692 ~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~~~~~  765 (872)
                      +++...   .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++......   .....+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  168 (267)
T 3t9t_A           92 DYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP  168 (267)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCC
T ss_pred             HHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccccccccccccc
Confidence            999753   57888999999999999999999   99999999999999999999999999987543211   1111233


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ..|.+||......++.++||||+||++|||+| |+.||.......      ....+........+.   .....+.+++.
T Consensus       169 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~------~~~~i~~~~~~~~~~---~~~~~l~~li~  239 (267)
T 3t9t_A          169 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE------VVEDISTGFRLYKPR---LASTHVYQIMN  239 (267)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHHHHHTTCCCCCCT---TSCHHHHHHHH
T ss_pred             ccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH------HHHHHhcCCcCCCCc---cCcHHHHHHHH
Confidence            45778888887788899999999999999999 677765432110      011111110000011   11245778999


Q ss_pred             HcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          845 LCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      +||+.||++|||++|++++|+.+...
T Consensus       240 ~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          240 HCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHhc
Confidence            99999999999999999999887543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=2.9e-38  Score=340.22  Aligned_cols=243  Identities=16%  Similarity=0.170  Sum_probs=191.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++.....  ..+.+.+|+.++++++|||||++++++.+++..|+|||||++|
T Consensus        11 i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~   90 (323)
T 3tki_A           11 LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGG   90 (323)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTE
T ss_pred             eeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCC
Confidence            889999999999999986 4899999999965432  2456789999999999999999999999999999999999999


Q ss_pred             ChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC----CCCc
Q 002875          689 NLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD----GSFP  762 (872)
Q Consensus       689 ~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~----~~~~  762 (872)
                      +|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......    ....
T Consensus        91 ~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  167 (323)
T 3tki_A           91 ELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKM  167 (323)
T ss_dssp             EGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSC
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCC
Confidence            999999764  57889999999999999999999   99999999999999999999999999997543221    1122


Q ss_pred             ccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      .++..|.+||......+ +.++||||+||++|||+||+.||..........     ....... . ...........+.+
T Consensus       168 ~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~~~~~  240 (323)
T 3tki_A          168 CGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY-----SDWKEKK-T-YLNPWKKIDSAPLA  240 (323)
T ss_dssp             CSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHH-----HHHHTTC-T-TSTTGGGSCHHHHH
T ss_pred             ccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHH-----HHHhccc-c-cCCccccCCHHHHH
Confidence            35566788888766554 778999999999999999999997543221100     0000000 0 01111223346778


Q ss_pred             HHHHcccCCCCCCCCHHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ++.+||+.||++|||++|++++-
T Consensus       241 li~~~L~~dP~~R~t~~eil~h~  263 (323)
T 3tki_A          241 LLHKILVENPSARITIPDIKKDR  263 (323)
T ss_dssp             HHHHHSCSSTTTSCCHHHHTTCT
T ss_pred             HHHHHccCChhhCcCHHHHhhCh
Confidence            99999999999999999998753

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=4.6e-38  Score=345.39  Aligned_cols=245  Identities=15%  Similarity=0.120  Sum_probs=191.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|+. .+|+.||||+++....    ..+.+.+|..++.++ +|||||++++++.+++..|+|||||
T Consensus        56 ~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~  135 (396)
T 4dc2_A           56 LLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYV  135 (396)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcC
Confidence            889999999999999985 5688999999975422    234577888888876 8999999999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc--CCCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA--DGSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~--~~~~  761 (872)
                      ++|+|.+++..  ..++.+...++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....  ....
T Consensus       136 ~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~  212 (396)
T 4dc2_A          136 NGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST  212 (396)
T ss_dssp             TTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCC
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecccCCCcccc
Confidence            99999999875  468888999999999999999999   9999999999999999999999999999753221  1222


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---cccccccccccccccCCCCchHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---PIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||+.||.........   ........+.... ...+.   ....+
T Consensus       213 ~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~-~~~p~---~~s~~  288 (396)
T 4dc2_A          213 FCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ-IRIPR---SLSVK  288 (396)
T ss_dssp             CCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCC-CCCCT---TSCHH
T ss_pred             ccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccc-cCCCC---cCCHH
Confidence            34667788999998888999999999999999999999999643211110   0000111111111 11111   12346


Q ss_pred             HHHHHHHcccCCCCCCCCH------HHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSM------EEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~------~~v~~~  863 (872)
                      +.+++.+||+.||++||++      +|++++
T Consensus       289 ~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H  319 (396)
T 4dc2_A          289 AASVLKSFLNKDPKERLGCHPQTGFADIQGH  319 (396)
T ss_dssp             HHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred             HHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence            7789999999999999985      677654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=4.6e-38  Score=341.82  Aligned_cols=255  Identities=20%  Similarity=0.248  Sum_probs=190.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEec-----CCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN-----RHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-----~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|+. +|+.||||++...........+|+..+..++||||+++++++..     ....++|||||+
T Consensus        17 ~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~   95 (336)
T 3g2f_A           17 LLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYP   95 (336)
T ss_dssp             EEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCT
T ss_pred             eeeecccCCCeEEEEEEE-CCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCC
Confidence            889999999999999976 78999999997544333333445555667899999999986642     336789999999


Q ss_pred             CCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCC------CCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-
Q 002875          687 NGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDC------YPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-  758 (872)
Q Consensus       687 ~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~------~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-  758 (872)
                      +|+|.+++.. ..++.....++.|+++||+|||+.+      .++|+||||||+||+++.++.+||+|||+++...... 
T Consensus        96 ~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~  175 (336)
T 3g2f_A           96 NGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRL  175 (336)
T ss_dssp             TCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSC
T ss_pred             CCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccc
Confidence            9999999975 4588889999999999999999873      3489999999999999999999999999997543211 


Q ss_pred             ---------CCCcccccccCchhhhcc-------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccc------
Q 002875          759 ---------GSFPAKIAWTESGEFYNA-------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGL------  816 (872)
Q Consensus       759 ---------~~~~~~~~~~~~~e~~~~-------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~------  816 (872)
                               .....++..|.+||...+       ..++.++|||||||++|||+||+.|+..+...........      
T Consensus       176 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~  255 (336)
T 3g2f_A          176 VRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNH  255 (336)
T ss_dssp             C---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSS
T ss_pred             cCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCC
Confidence                     011224566788887765       4566789999999999999999888775543222111000      


Q ss_pred             ----------ccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          817 ----------LGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       817 ----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                                ......+..............++.+++.+||+.||++|||++|+++.|+.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~l  316 (336)
T 3g2f_A          256 PTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAEL  316 (336)
T ss_dssp             CCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHH
T ss_pred             chHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHH
Confidence                      000000110111111233556788999999999999999999999999865

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=344.90  Aligned_cols=239  Identities=17%  Similarity=0.137  Sum_probs=190.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++...    ...+.+.+|+.+++++ +|||||++++++.+.+..|+|||||
T Consensus        27 ~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~  106 (353)
T 3txo_A           27 FIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFV  106 (353)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCC
Confidence            889999999999999985 579999999997532    2355677889999887 6999999999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      ++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......  ...
T Consensus       107 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~  183 (353)
T 3txo_A          107 NGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTAT  183 (353)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-------
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeecccCCccccc
Confidence            99999999965  568888999999999999999999   99999999999999999999999999987532221  122


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||+.||......      .....+.... ...+.   .....+.+
T Consensus       184 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~------~~~~~i~~~~-~~~p~---~~~~~~~~  253 (353)
T 3txo_A          184 FCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED------DLFEAILNDE-VVYPT---WLHEDATG  253 (353)
T ss_dssp             --CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHCC-CCCCT---TSCHHHHH
T ss_pred             cCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH------HHHHHHHcCC-CCCCC---CCCHHHHH
Confidence            33567788999988888899999999999999999999999754321      1111111111 11111   12245778


Q ss_pred             HHHHcccCCCCCCCCH------HHHHHH
Q 002875          842 VALLCTRSTPSDRPSM------EEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~------~~v~~~  863 (872)
                      ++.+||+.||++||++      +|++++
T Consensus       254 li~~lL~~dP~~R~~~~~~~~~~~il~h  281 (353)
T 3txo_A          254 ILKSFMTKNPTMRLGSLTQGGEHAILRH  281 (353)
T ss_dssp             HHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred             HHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence            9999999999999998      777653

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.1e-37  Score=332.99  Aligned_cols=248  Identities=18%  Similarity=0.252  Sum_probs=180.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++....  ..+.+.+|++++++++|||||++++++.+++..++||||++ |
T Consensus         9 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~   87 (317)
T 2pmi_A            9 QLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-N   87 (317)
T ss_dssp             ----------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-C
T ss_pred             EeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-C
Confidence            889999999999999986 5799999999975432  34677889999999999999999999999999999999998 6


Q ss_pred             ChHHHhhC--------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          689 NLSEKIRT--------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       689 ~L~~~l~~--------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      +|.+++..        ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++....... 
T Consensus        88 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  164 (317)
T 2pmi_A           88 DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNT  164 (317)
T ss_dssp             BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCC
T ss_pred             CHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecCCCccc
Confidence            99998853        357888899999999999999999   999999999999999999999999999876533221 


Q ss_pred             -CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccccccccccc
Q 002875          760 -SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGLLGEMYN  822 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~~~~~~~  822 (872)
                       ....++.+|.+||...+ ..++.++||||+||++|||+||+.||........               +...........
T Consensus       165 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  244 (317)
T 2pmi_A          165 FSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNP  244 (317)
T ss_dssp             CCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCT
T ss_pred             CCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhccc
Confidence             12234566788888765 4678899999999999999999999875432100               000000000000


Q ss_pred             ccccCCCCchH---------HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 ENEVGSSSSLQ---------DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~~~~~~~~~~~---------~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...........         ....++.+++.+||+.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          245 NIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             TCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence            00000000000         123467899999999999999999999865

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1.9e-38  Score=341.94  Aligned_cols=246  Identities=17%  Similarity=0.186  Sum_probs=178.1

Q ss_pred             hhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          613 CEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      .+.||+|+||.||+|.. .+|+.||||++...  ....+.+|+.++++++ |||||++++++.+++..|+|||||++|+|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L   93 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR--MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGEL   93 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG--GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh--hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcH
Confidence            46799999999999986 57899999999743  3456778999999997 99999999999999999999999999999


Q ss_pred             HHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC---CeeEccccccccccccCC--CCcc
Q 002875          691 SEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM---EPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       691 ~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~---~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      .+++...  .++.+...++.|++.||+|||+.   +|+||||||+||+++.++   .+||+|||+++.......  ....
T Consensus        94 ~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  170 (325)
T 3kn6_A           94 FERIKKKKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC  170 (325)
T ss_dssp             HHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC---------
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccC
Confidence            9999764  57888999999999999999999   999999999999997665   799999999975433221  1223


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc-cccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK-PIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      ++..|.+||......++.++||||+||++|||+||+.||......... ........+.........+.......++.++
T Consensus       171 ~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  250 (325)
T 3kn6_A          171 FTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDL  250 (325)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHH
T ss_pred             CCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHH
Confidence            456688889988888999999999999999999999999754321110 0111111111111111111223345678899


Q ss_pred             HHHcccCCCCCCCCHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+||+.||++|||++|++++
T Consensus       251 i~~~L~~dP~~Rpt~~ell~h  271 (325)
T 3kn6_A          251 IQGLLTVDPNKRLKMSGLRYN  271 (325)
T ss_dssp             HHHHHCCCTTTCCCTTTSTTC
T ss_pred             HHHHCCCChhHCCCHHHHhcC
Confidence            999999999999999998754

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=4.3e-38  Score=338.63  Aligned_cols=247  Identities=19%  Similarity=0.234  Sum_probs=195.5

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|..      .+|+.||||++....  ...+.+.+|++++++++|||||++++++.+.+..++|||
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  106 (314)
T 2ivs_A           27 LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVE  106 (314)
T ss_dssp             EEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEe
Confidence            788999999999999974      456899999997542  345678899999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC--------------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee
Q 002875          684 YLPNGNLSEKIRTK--------------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF  737 (872)
Q Consensus       684 y~~~g~L~~~l~~~--------------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill  737 (872)
                      |+++|+|.+++...                          .++.+.+.++.|+++||+|||+.   +|+||||||+||++
T Consensus       107 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp~NIli  183 (314)
T 2ivs_A          107 YAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAARNILV  183 (314)
T ss_dssp             CCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEE
T ss_pred             ecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccchheEEE
Confidence            99999999999642                          46778899999999999999999   99999999999999


Q ss_pred             CCCCCeeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcc
Q 002875          738 DENMEPHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKP  812 (872)
Q Consensus       738 ~~~~~~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~  812 (872)
                      +.++.+||+|||+++.......    ....+...|.+||...+..++.++||||+||++|||+| |+.||.......   
T Consensus       184 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~---  260 (314)
T 2ivs_A          184 AEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPER---  260 (314)
T ss_dssp             ETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---
T ss_pred             cCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---
Confidence            9999999999999875432221    11123345778888877778899999999999999999 888876433211   


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                         ....+........+   ......+.+++.+||+.||++|||++|++++|+++...
T Consensus       261 ---~~~~~~~~~~~~~~---~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          261 ---LFNLLKTGHRMERP---DNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             ---HHHHHHTTCCCCCC---TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ---HHHHhhcCCcCCCC---ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence               00011111001111   12234677899999999999999999999999877543

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=6.8e-38  Score=341.54  Aligned_cols=247  Identities=21%  Similarity=0.238  Sum_probs=196.1

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|..      .+++.||||+++...  ...+.+.+|+.++++++||||++++++|.+.+..|+|||
T Consensus        51 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  130 (343)
T 1luf_A           51 YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFE  130 (343)
T ss_dssp             EEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             eeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEe
Confidence            788999999999999986      345899999997543  235678999999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC--------------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee
Q 002875          684 YLPNGNLSEKIRT--------------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF  737 (872)
Q Consensus       684 y~~~g~L~~~l~~--------------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill  737 (872)
                      |+++|+|.+++..                          ..++.+++.++.|+++||+|||+.   +|+||||||+||++
T Consensus       131 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~  207 (343)
T 1luf_A          131 YMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLV  207 (343)
T ss_dssp             CCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             cCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEE
Confidence            9999999999864                          357788899999999999999999   99999999999999


Q ss_pred             CCCCCeeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcc
Q 002875          738 DENMEPHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKP  812 (872)
Q Consensus       738 ~~~~~~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~  812 (872)
                      +.++.+||+|||+++.......    ....++..|.+||......++.++|||||||++|||+| |..||.......   
T Consensus       208 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~---  284 (343)
T 1luf_A          208 GENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE---  284 (343)
T ss_dssp             CGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---
T ss_pred             CCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHH---
Confidence            9999999999999865432211    11223445778888877788999999999999999999 877876432111   


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                         ....+.+......+.   .....+.+++.+||+.||++|||++|++++|+.+...
T Consensus       285 ---~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~  336 (343)
T 1luf_A          285 ---VIYYVRDGNILACPE---NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCER  336 (343)
T ss_dssp             ---HHHHHHTTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-
T ss_pred             ---HHHHHhCCCcCCCCC---CCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhh
Confidence               011111111011111   1234677899999999999999999999999988653

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=5.5e-38  Score=332.99  Aligned_cols=247  Identities=19%  Similarity=0.250  Sum_probs=188.6

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|...+|+.||||++.....   ..+.+.+|++++++++|||||++++++.+++..++||||+++ 
T Consensus         6 ~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-   84 (288)
T 1ob3_A            6 GLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-   84 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSE-
T ss_pred             hhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecCC-
Confidence            7889999999999999998899999999965432   246778999999999999999999999999999999999985 


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      +|.+++..   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  161 (288)
T 1ob3_A           85 DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEI  161 (288)
T ss_dssp             EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred             CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCcccccccccc
Confidence            99998865   357888899999999999999999   999999999999999999999999999875432211  1122


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCC---------------Cccccccccccccccc--
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ---------------NKPIDGLLGEMYNENE--  825 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~---------------~~~~~~~~~~~~~~~~--  825 (872)
                      ++..|.+||...+ ..++.++||||+||++|||+||+.||.......               .++....... +++..  
T Consensus       162 ~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  240 (288)
T 1ob3_A          162 VTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPK-YDPNFTV  240 (288)
T ss_dssp             CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTT-CCTTCCC
T ss_pred             ccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccc-ccccccc
Confidence            4556778887754 457899999999999999999999987432110               0000000000 00000  


Q ss_pred             ---cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          826 ---VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       826 ---~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                         ............++.+++.+||+.||++|||++|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  281 (288)
T 1ob3_A          241 YEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (288)
T ss_dssp             CCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence               00000011223567799999999999999999999865

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.6e-38  Score=351.21  Aligned_cols=244  Identities=15%  Similarity=0.082  Sum_probs=192.4

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ...+.||+|+||.||+|.. .+|+.||||+++...    ...+.+.+|+.+++.++|||||+++++|.+++..|+|||||
T Consensus        72 ~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~  151 (410)
T 3v8s_A           72 EVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYM  151 (410)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCC
Confidence            3888999999999999986 568999999997532    22445788999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCC
Q 002875          686 PNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~  761 (872)
                      ++|+|.++++. ..++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......   ...
T Consensus       152 ~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~  228 (410)
T 3v8s_A          152 PGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDT  228 (410)
T ss_dssp             TTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCS
T ss_pred             CCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccC
Confidence            99999999975 457888899999999999999999   99999999999999999999999999997643321   122


Q ss_pred             cccccccCchhhhcccC----CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          762 PAKIAWTESGEFYNAMK----EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~----~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      ..++..|.+||+.....    ++.++||||+||++|||+||+.||.+.....      ....+.........+.......
T Consensus       229 ~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~------~~~~i~~~~~~~~~p~~~~~s~  302 (410)
T 3v8s_A          229 AVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG------TYSKIMNHKNSLTFPDDNDISK  302 (410)
T ss_dssp             CCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHTHHHHCCCCTTCCCCH
T ss_pred             CcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhh------HHHHHHhccccccCCCcccccH
Confidence            34566788889876544    7789999999999999999999997543211      1111111000000111111234


Q ss_pred             HHHHHHHHcccCCCCC--CCCHHHHHHH
Q 002875          838 LVLDVALLCTRSTPSD--RPSMEEALKL  863 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~--Rpt~~~v~~~  863 (872)
                      ++.+++.+||..+|++  ||+++|+++|
T Consensus       303 ~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          303 EAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             HHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             HHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence            6778899999999988  9999999876

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=2.3e-38  Score=342.72  Aligned_cols=238  Identities=18%  Similarity=0.171  Sum_probs=191.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++...    ...+.+..|..+++++ +|||||++++++.+.+..|+||||+
T Consensus        21 ~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~  100 (345)
T 1xjd_A           21 LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYL  100 (345)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCC
Confidence            889999999999999986 579999999997542    2345677788888876 8999999999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      ++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  ...
T Consensus       101 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~  177 (345)
T 1xjd_A          101 NGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNT  177 (345)
T ss_dssp             TTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCC
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccC
Confidence            99999999975  568889999999999999999999   99999999999999999999999999987532211  122


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+
T Consensus       178 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~~  247 (345)
T 1xjd_A          178 FCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE------LFHSIRMDN-PFYPR---WLEKEAKD  247 (345)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TSCHHHHH
T ss_pred             CCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHH------HHHHHHhCC-CCCCc---ccCHHHHH
Confidence            335667889999888888999999999999999999999987543211      111111111 11111   12346778


Q ss_pred             HHHHcccCCCCCCCCHH-HHHH
Q 002875          842 VALLCTRSTPSDRPSME-EALK  862 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~-~v~~  862 (872)
                      ++.+||+.||++||++. |+.+
T Consensus       248 li~~lL~~dp~~R~~~~~~i~~  269 (345)
T 1xjd_A          248 LLVKLFVREPEKRLGVRGDIRQ  269 (345)
T ss_dssp             HHHHHSCSSGGGSBTTBSCGGG
T ss_pred             HHHHHhcCCHhHcCCChHHHHc
Confidence            99999999999999997 6653

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.6e-38  Score=341.41  Aligned_cols=248  Identities=10%  Similarity=0.020  Sum_probs=194.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.||+|+||.||+|.. .+|+.||||.+.... ..+.+.+|+++++++ +||||+++++++.+.+..++||||+ +|+
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~   90 (330)
T 2izr_A           13 VGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS-RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPS   90 (330)
T ss_dssp             EEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC-SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCB
T ss_pred             EEEEeeccCCceEEEEEECCCCcEEEEEEecccc-chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCC
Confidence            788999999999999985 789999999987543 234578899999999 9999999999999999999999999 999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC-----eeEccccccccccccCC--
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME-----PHLAEFGFKYLTQLADG--  759 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~-----~ki~dfg~~~~~~~~~~--  759 (872)
                      |.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.     +||+|||+++.......  
T Consensus        91 L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~  167 (330)
T 2izr_A           91 LEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKK  167 (330)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCC
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCc
Confidence            9999873   568999999999999999999999   9999999999999998887     99999999976433221  


Q ss_pred             -------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          760 -------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       760 -------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                             ....++..|.+||...+..++.++|||||||++|||+||+.||.........   .....+.........+..
T Consensus       168 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~---~~~~~i~~~~~~~~~~~~  244 (330)
T 2izr_A          168 HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLK---ERYQKIGDTKRATPIEVL  244 (330)
T ss_dssp             BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHH---HHHHHHHHHHHHSCHHHH
T ss_pred             cccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHH---HHHHHHHhhhccCCHHHH
Confidence                   1223556688899988888899999999999999999999999754321110   111111110000000000


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+...++.+++..||+.||.+||+++++.+.|+.+
T Consensus       245 ~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~  279 (330)
T 2izr_A          245 CENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDL  279 (330)
T ss_dssp             TTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred             hccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            01112788999999999999999999999998754

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=8.1e-38  Score=337.19  Aligned_cols=251  Identities=19%  Similarity=0.169  Sum_probs=198.8

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-------hHHHHHHHHHHhhccCCCCceeEEEEEe
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-------RIKIVSEFITRIGTVRHKNLIRLLGFCY  673 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~  673 (872)
                      ..+.+.|.  ..+.||+|+||.||+|.. .+|+.||||.+.....       ..+.+.+|+.++++++||||+++++++.
T Consensus         8 ~~~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   85 (321)
T 2a2a_A            8 QKVEDFYD--IGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE   85 (321)
T ss_dssp             SCHHHHEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             hhhhccEE--EeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            34556666  889999999999999986 5799999999975321       3567889999999999999999999999


Q ss_pred             cCCeeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC----CeeEcc
Q 002875          674 NRHQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM----EPHLAE  747 (872)
Q Consensus       674 ~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~----~~ki~d  747 (872)
                      +.+..++||||+++|+|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||+++.++    .+||+|
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~D  162 (321)
T 2a2a_A           86 NRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLID  162 (321)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECC
T ss_pred             cCCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEcc
Confidence            999999999999999999999764  46888899999999999999999   999999999999999887    799999


Q ss_pred             ccccccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc
Q 002875          748 FGFKYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       748 fg~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      ||+++....... ....++..|.+||...+..++.++||||+||++|||+||+.||.......      ....+......
T Consensus       163 fg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~------~~~~i~~~~~~  236 (321)
T 2a2a_A          163 FGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE------TLANITSVSYD  236 (321)
T ss_dssp             CTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH------HHHHHHTTCCC
T ss_pred             CccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhcccc
Confidence            999876543222 22235566888898888888999999999999999999999987533111      01111110000


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ............+.+++.+||+.||++|||++|++++
T Consensus       237 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          237 FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             CCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             cChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            0000011223467889999999999999999999875

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=8.4e-38  Score=334.98  Aligned_cols=238  Identities=17%  Similarity=0.160  Sum_probs=194.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++...    ...+.+.+|+.++++++|||||++++++.+.+..|+||||++
T Consensus        10 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~   89 (318)
T 1fot_A           10 ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIE   89 (318)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCC
Confidence            889999999999999986 579999999997532    235667889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ...+
T Consensus        90 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~-~~~g  165 (318)
T 1fot_A           90 GGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY-TLCG  165 (318)
T ss_dssp             SCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC-CCCS
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCCccc-cccC
Confidence            9999999975  457888899999999999999999   999999999999999999999999999976543222 2235


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||...+..++.++||||+||++|||+||+.||.+.....      ....+.... ...++.   ...++.+++.
T Consensus       166 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~------~~~~i~~~~-~~~p~~---~~~~~~~li~  235 (318)
T 1fot_A          166 TPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK------TYEKILNAE-LRFPPF---FNEDVKDLLS  235 (318)
T ss_dssp             CTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHCC-CCCCTT---SCHHHHHHHH
T ss_pred             CccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCC-CCCCCC---CCHHHHHHHH
Confidence            566888898888888999999999999999999999997543211      111111111 111111   2245778899


Q ss_pred             HcccCCCCCCC-----CHHHHHHH
Q 002875          845 LCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +|++.||++||     +++|++++
T Consensus       236 ~lL~~dp~~R~~~~~~~~~~i~~h  259 (318)
T 1fot_A          236 RLITRDLSQRLGNLQNGTEDVKNH  259 (318)
T ss_dssp             HHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             HHhccCHHHcCCCcCCCHHHHhcC
Confidence            99999999999     89998754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.5e-37  Score=350.51  Aligned_cols=252  Identities=19%  Similarity=0.218  Sum_probs=191.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC------
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------  675 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------  675 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|+.++++++|||||++++++...      
T Consensus        62 ~~y~--~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           62 KRYQ--NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             TTEE--EEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             CCeE--EEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence            4455  889999999999999984 67999999999753   23456778999999999999999999999754      


Q ss_pred             CeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      ...|+|||||++ ++.+.+....++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       140 ~~~~lv~E~~~~-~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  215 (464)
T 3ttj_A          140 QDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  215 (464)
T ss_dssp             CEEEEEEECCSE-EHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC----
T ss_pred             CeEEEEEeCCCC-CHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeeeecC
Confidence            357999999975 68888888889999999999999999999999   99999999999999999999999999997654


Q ss_pred             ccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-------------c---cccc
Q 002875          756 LADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-------------D---GLLG  818 (872)
Q Consensus       756 ~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-------------~---~~~~  818 (872)
                      .... ....++.+|.+||+..+..++.++||||+||++|||++|+.||.+......+..             .   ....
T Consensus       216 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~  295 (464)
T 3ttj_A          216 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVR  295 (464)
T ss_dssp             -CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHH
T ss_pred             CCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhh
Confidence            3322 222366778999998888899999999999999999999999975432110000             0   0000


Q ss_pred             cccccc---------------ccCC-CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 EMYNEN---------------EVGS-SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ~~~~~~---------------~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......               .... .........++.+++.+||+.||++|||++|++++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          296 NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             HHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000000               0000 00112235678899999999999999999999875

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.7e-38  Score=335.39  Aligned_cols=241  Identities=15%  Similarity=0.147  Sum_probs=184.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---------------------------hHHHHHHHHHHhhccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---------------------------RIKIVSEFITRIGTVRHK  663 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---------------------------~~~~~~~e~~~l~~l~H~  663 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++.....                           ..+.+.+|++++++++||
T Consensus        17 ~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   96 (298)
T 2zv2_A           17 LKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHP   96 (298)
T ss_dssp             EEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCT
T ss_pred             EEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCC
Confidence            889999999999999985 6789999999965321                           135678999999999999


Q ss_pred             CceeEEEEEec--CCeeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC
Q 002875          664 NLIRLLGFCYN--RHQAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN  740 (872)
Q Consensus       664 niv~l~~~~~~--~~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~  740 (872)
                      |||++++++.+  .+..|+||||+++|+|.+++.. ..++.+...++.|+++||+|||+.   +|+||||||+||+++.+
T Consensus        97 ~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~  173 (298)
T 2zv2_A           97 NVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNLLVGED  173 (298)
T ss_dssp             TBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTT
T ss_pred             CCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCC
Confidence            99999999986  5689999999999999987654 468889999999999999999999   99999999999999999


Q ss_pred             CCeeEccccccccccccCC--CCcccccccCchhhhcccC---CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccc
Q 002875          741 MEPHLAEFGFKYLTQLADG--SFPAKIAWTESGEFYNAMK---EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDG  815 (872)
Q Consensus       741 ~~~ki~dfg~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~---~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~  815 (872)
                      +.+||+|||+++.......  ....++..|.+||......   ++.++||||+||++|||+||+.||.......      
T Consensus       174 ~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~------  247 (298)
T 2zv2_A          174 GHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMC------  247 (298)
T ss_dssp             SCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------
T ss_pred             CCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHH------
Confidence            9999999999876543221  1223556677888776543   3677899999999999999999987432110      


Q ss_pred             cccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          816 LLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.... .. .+.......++.+++.+||+.||++|||++|++++
T Consensus       248 ~~~~~~~~~-~~-~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h  293 (298)
T 2zv2_A          248 LHSKIKSQA-LE-FPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLH  293 (298)
T ss_dssp             HHHHHHHCC-CC-CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred             HHHHHhccc-CC-CCCccccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence            000000000 00 00001122457789999999999999999999764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=2e-37  Score=328.65  Aligned_cols=244  Identities=21%  Similarity=0.274  Sum_probs=189.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh--------HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR--------IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~--------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||++......        .+.+.+|+.++++++||||+++++++.+..  ++||
T Consensus        23 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~lv~  100 (287)
T 4f0f_A           23 YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--RMVM  100 (287)
T ss_dssp             EEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--EEEE
T ss_pred             ehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--eEEE
Confidence            788999999999999986 68999999998643221        167889999999999999999999997655  6999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCC--cccCCCCCCCeeeCCCCC-----eeEccccccc
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPA--IPHGDLKASNIVFDENME-----PHLAEFGFKY  752 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~--i~Hrdlk~~Nill~~~~~-----~ki~dfg~~~  752 (872)
                      ||+++|+|.+++..   ..++.....++.|++.||+|||+.   +  |+||||||+||+++.++.     +||+|||+++
T Consensus       101 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~  177 (287)
T 4f0f_A          101 EFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQ  177 (287)
T ss_dssp             ECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCB
T ss_pred             EecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeCCCCccc
Confidence            99999999998854   358899999999999999999998   7  999999999999987776     9999999987


Q ss_pred             cccccCCCCcccccccCchhhh--cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          753 LTQLADGSFPAKIAWTESGEFY--NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~e~~--~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      ....... ...++..|.+||..  ....++.++||||+||++|||+||+.||....................+.   .+ 
T Consensus       178 ~~~~~~~-~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~-  252 (287)
T 4f0f_A          178 QSVHSVS-GLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPT---IP-  252 (287)
T ss_dssp             CCSSCEE-CCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCC---CC-
T ss_pred             ccccccc-ccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCC---CC-
Confidence            5432211 12245567788877  34456788999999999999999999987543211100000000000110   11 


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                        ......+.+++.+||+.||++|||++|+++.|+++
T Consensus       253 --~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          253 --EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             --TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             --cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence              12234678899999999999999999999999864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.7e-37  Score=330.00  Aligned_cols=249  Identities=20%  Similarity=0.237  Sum_probs=189.1

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ...+.||+|+||.||+|.. .+|+.||||++....   ...+.+.+|+.++++++|||||++++++.+++..++||||++
T Consensus         5 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   84 (292)
T 3o0g_A            5 EKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCD   84 (292)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             eeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCC
Confidence            3788999999999999986 578999999997533   234677899999999999999999999999999999999998


Q ss_pred             CCChHHHhh---CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CC
Q 002875          687 NGNLSEKIR---TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SF  761 (872)
Q Consensus       687 ~g~L~~~l~---~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~  761 (872)
                      + ++.+.+.   ...++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ..
T Consensus        85 ~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  160 (292)
T 3o0g_A           85 Q-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSA  160 (292)
T ss_dssp             E-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCS
T ss_pred             C-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCccccccC
Confidence            6 5555553   2468889999999999999999999   999999999999999999999999999976543221  22


Q ss_pred             cccccccCchhhhcccC-CcccccchhHHHHHHHHHcCCCCCCCCCCCCCc----------------ccccccccccccc
Q 002875          762 PAKIAWTESGEFYNAMK-EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK----------------PIDGLLGEMYNEN  824 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~-~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~----------------~~~~~~~~~~~~~  824 (872)
                      ..++.+|.+||...+.. ++.++||||+||++|||+||+.|+..+......                .............
T Consensus       161 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  240 (292)
T 3o0g_A          161 EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYP  240 (292)
T ss_dssp             CCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCC
T ss_pred             CccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccc
Confidence            23456678888876554 789999999999999999999997644321110                0000000000000


Q ss_pred             ----ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 ----EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ----~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                          ........+.....+.+++.+||+.||++|||++|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  283 (292)
T 3o0g_A          241 MYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             CCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence                000000112234567799999999999999999999875

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=9.4e-38  Score=351.15  Aligned_cols=239  Identities=15%  Similarity=0.200  Sum_probs=192.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|+. .+|+.||||++.....    ..+.+.+|+.++++++|||||++++++.+.+..|+|||||+
T Consensus        20 l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~   99 (476)
T 2y94_A           20 LGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVS   99 (476)
T ss_dssp             EEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCS
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCC
Confidence            788999999999999986 4899999999975422    24578899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCcc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPA  763 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~~  763 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ....
T Consensus       100 gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~  176 (476)
T 2y94_A          100 GGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC  176 (476)
T ss_dssp             SEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCC
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhccccccccccC
Confidence            9999999975  357888999999999999999999   999999999999999999999999999976543221 2233


Q ss_pred             cccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      ++..|.+||...+..+ +.++||||+||++|||+||+.||.+.....      ....+.... ...+.   .....+.++
T Consensus       177 gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~~L  246 (476)
T 2y94_A          177 GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT------LFKKICDGI-FYTPQ---YLNPSVISL  246 (476)
T ss_dssp             SCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH------HHHHHHTTC-CCCCT---TCCHHHHHH
T ss_pred             CCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH------HHHHHhcCC-cCCCc---cCCHHHHHH
Confidence            5667888898876554 678999999999999999999987543211      111111111 00011   122457789


Q ss_pred             HHHcccCCCCCCCCHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+||+.||++|||++|++++
T Consensus       247 i~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          247 LKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             HHHHTCSSTTTSCCHHHHHTC
T ss_pred             HHHHcCCCchhCcCHHHHHhC
Confidence            999999999999999999864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=333.42  Aligned_cols=245  Identities=23%  Similarity=0.295  Sum_probs=187.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|.. .|+.||||++... ...+.+.+|++++++++|||||+++|++.+  ..++||||+++|+|.
T Consensus        12 ~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~~~~L~   87 (307)
T 2eva_A           12 VEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE-SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAEGGSLY   87 (307)
T ss_dssp             EEEEEECCSSSEEEEEEE-TTEEEEEEECSST-THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCTTCBHH
T ss_pred             eeeEeecCCCceEEEEEE-CCeeEEEEEecCh-hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCCCCCHH
Confidence            788999999999999987 4889999999643 345678899999999999999999998874  479999999999999


Q ss_pred             HHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC-eeEccccccccccccCCCCcccc
Q 002875          692 EKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME-PHLAEFGFKYLTQLADGSFPAKI  765 (872)
Q Consensus       692 ~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~-~ki~dfg~~~~~~~~~~~~~~~~  765 (872)
                      +++...     .++.....++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||++........ ...++
T Consensus        88 ~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~-~~~gt  166 (307)
T 2eva_A           88 NVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMT-NNKGS  166 (307)
T ss_dssp             HHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------------CC
T ss_pred             HHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccc-cCCCC
Confidence            999763     367888999999999999999943239999999999999998886 79999999865433221 12345


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||...+..++.++|||||||++|||+||+.||..........    .........   .+........+.+++.+
T Consensus       167 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~l~~li~~  239 (307)
T 2eva_A          167 AAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI----MWAVHNGTR---PPLIKNLPKPIESLMTR  239 (307)
T ss_dssp             TTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHH----HHHHHTTCC---CCCBTTCCHHHHHHHHH
T ss_pred             CceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHH----HHHHhcCCC---CCcccccCHHHHHHHHH
Confidence            56788898888888999999999999999999999987432211000    000000000   01111223457789999


Q ss_pred             cccCCCCCCCCHHHHHHHHcccC
Q 002875          846 CTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ||+.||++|||++|++++|+.+.
T Consensus       240 ~l~~dp~~Rps~~ell~~L~~~~  262 (307)
T 2eva_A          240 CWSKDPSQRPSMEEIVKIMTHLM  262 (307)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHG
T ss_pred             HhcCChhhCcCHHHHHHHHHHHH
Confidence            99999999999999999998664

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1e-37  Score=338.34  Aligned_cols=245  Identities=15%  Similarity=0.120  Sum_probs=191.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++...    ...+.+.+|+.+++++ +|||||++++++.+.+..|+||||+
T Consensus        13 ~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~   92 (345)
T 3a8x_A           13 LLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYV   92 (345)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             EEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCC
Confidence            889999999999999986 578999999997542    2345678899999887 8999999999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      ++|+|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  ...
T Consensus        93 ~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~  169 (345)
T 3a8x_A           93 NGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST  169 (345)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCC
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccc
Confidence            99999999875  468888999999999999999999   99999999999999999999999999987532211  122


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc---cccccccccccccccCCCCchHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK---PIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||+.||.........   ........+.... ...+.   ....+
T Consensus       170 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~-~~~p~---~~s~~  245 (345)
T 3a8x_A          170 FCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ-IRIPR---SLSVK  245 (345)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCC-CCCCT---TSCHH
T ss_pred             cCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCC-CCCCC---CCCHH
Confidence            33566788999988888899999999999999999999999642211100   0000011111111 11111   12346


Q ss_pred             HHHHHHHcccCCCCCCCCH------HHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSM------EEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~------~~v~~~  863 (872)
                      +.+++.+||+.||++||++      +|++++
T Consensus       246 ~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h  276 (345)
T 3a8x_A          246 AASVLKSFLNKDPKERLGCHPQTGFADIQGH  276 (345)
T ss_dssp             HHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred             HHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence            7789999999999999995      677654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=6.2e-38  Score=338.80  Aligned_cols=246  Identities=17%  Similarity=0.234  Sum_probs=187.3

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcE----EEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGIT----VSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~----vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      |...+.||+|+||.||+|.. .+|+.    ||+|.+....  ...+.+.+|+.++++++|||||+++++|.+.+ .++||
T Consensus        17 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~v~   95 (327)
T 3poz_A           17 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLIT   95 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEEEE
T ss_pred             cccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEEEE
Confidence            33889999999999999984 45554    5888775432  34567889999999999999999999998765 78999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+++|+|.+++..   ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        96 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~  172 (327)
T 3poz_A           96 QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK  172 (327)
T ss_dssp             ECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC
T ss_pred             EecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEccCCcc
Confidence            99999999999965   357889999999999999999999   999999999999999999999999999976533222


Q ss_pred             CC----cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          760 SF----PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       760 ~~----~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      ..    ..++..|.+||...+..++.++|||||||++|||+| |+.||.......   ......   .......+.   .
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~~~~~---~~~~~~~~~---~  243 (327)
T 3poz_A          173 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE---ISSILE---KGERLPQPP---I  243 (327)
T ss_dssp             -------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHHHHH---TTCCCCCCT---T
T ss_pred             cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH---HHHHHH---cCCCCCCCc---c
Confidence            11    112345778888888889999999999999999999 888876432211   000010   000011111   1


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ....+.+++.+||+.||++|||++|++++|+.+.
T Consensus       244 ~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~  277 (327)
T 3poz_A          244 CTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA  277 (327)
T ss_dssp             BCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence            2346778999999999999999999999997664

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=5.9e-38  Score=329.83  Aligned_cols=243  Identities=19%  Similarity=0.259  Sum_probs=192.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|+. +|+.||||++....   ...+.+.+|+.++++++|||||+++++|.+.  +..++||||++
T Consensus        14 ~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~   92 (271)
T 3kmu_A           14 FLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMP   92 (271)
T ss_dssp             EEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCT
T ss_pred             HHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccC
Confidence            788999999999999997 48999999997542   3356788999999999999999999999887  78899999999


Q ss_pred             CCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCC--cccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          687 NGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPA--IPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       687 ~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~--i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      +|+|.+++...    .++.+...++.|+++||+|||+.   +  |+||||||+||+++.++.+||+|||++......   
T Consensus        93 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~---  166 (271)
T 3kmu_A           93 YGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSP---  166 (271)
T ss_dssp             TCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCT---
T ss_pred             CCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeeeccc---
Confidence            99999999864    58899999999999999999998   6  999999999999999999999999987543221   


Q ss_pred             CcccccccCchhhhcccCCc---ccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEE---MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~---~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      ...++..|.+||...+....   .++||||+||++|||+||+.||........  ..........+.   .+   .....
T Consensus       167 ~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~--~~~~~~~~~~~~---~~---~~~~~  238 (271)
T 3kmu_A          167 GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI--GMKVALEGLRPT---IP---PGISP  238 (271)
T ss_dssp             TCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH--HHHHHHSCCCCC---CC---TTCCH
T ss_pred             CccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH--HHHHHhcCCCCC---CC---CCCCH
Confidence            12234557788887654433   379999999999999999999874332110  000000110111   11   11234


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .+.+++.+||+.||++|||++|+++.|+.++.
T Consensus       239 ~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          239 HVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            57789999999999999999999999998865

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=6.5e-38  Score=347.26  Aligned_cols=242  Identities=15%  Similarity=0.167  Sum_probs=184.3

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhh-ccCCCCceeEEEEEec----CCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIG-TVRHKNLIRLLGFCYN----RHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~-~l~H~niv~l~~~~~~----~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|.. .+|+.||||+++..    ..+.+|++++. ..+|||||+++++|..    .+..|+|||||++
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~g  143 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG  143 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCcc----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCC
Confidence            6899999999999985 57899999999743    34567777764 4589999999999875    5678999999999


Q ss_pred             CChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEccccccccccccCC-
Q 002875          688 GNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       688 g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      |+|.+++...    .++.+...|+.|++.||+|||+.   +|+||||||+||+++.   ++.+||+|||+++....... 
T Consensus       144 g~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~  220 (400)
T 1nxk_A          144 GELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL  220 (400)
T ss_dssp             EEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----
T ss_pred             CcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccccccCCCCcc
Confidence            9999999763    57889999999999999999999   9999999999999997   78899999999976443221 


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ....++.+|.+||+.....++.++|||||||++|||+||+.||...........  ....+.........+.......++
T Consensus       221 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~s~~~  298 (400)
T 1nxk_A          221 TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG--MKTRIRMGQYEFPNPEWSEVSEEV  298 (400)
T ss_dssp             ------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCS--HHHHHHHTCCCCCTTTTTTSCHHH
T ss_pred             ccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHH--HHHHHHcCcccCCCcccccCCHHH
Confidence            223356678889998888899999999999999999999999975443221100  000000000000011112234567


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .+++.+||+.||++|||++|++++-
T Consensus       299 ~~li~~~L~~dP~~Rpt~~eil~hp  323 (400)
T 1nxk_A          299 KMLIRNLLKTEPTQRMTITEFMNHP  323 (400)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred             HHHHHHHCCCChhHCcCHHHHhcCc
Confidence            8999999999999999999999763

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.2e-38  Score=341.15  Aligned_cols=253  Identities=15%  Similarity=0.162  Sum_probs=195.2

Q ss_pred             chhhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc------chhHHHHHHHHHHhhccCCCCceeEEEEE
Q 002875          600 TANDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG------ATRIKIVSEFITRIGTVRHKNLIRLLGFC  672 (872)
Q Consensus       600 ~~~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~------~~~~~~~~~e~~~l~~l~H~niv~l~~~~  672 (872)
                      +..++.+.|.  ..+.||+|+||.||+|.. .+|+.||||++...      ....+.+.+|++++++++|||||+++++|
T Consensus        20 ~~~~~~~~y~--~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~   97 (345)
T 3hko_A           20 SLLELQKKYH--LKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVY   97 (345)
T ss_dssp             CHHHHHHHEE--EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hhhhhhhhee--ecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhh
Confidence            3566777787  889999999999999986 67889999998653      23456788999999999999999999999


Q ss_pred             ecCCeeEEEEcccCCCChHHHhhC------------------------------------------CCCHHHHHHHHHHH
Q 002875          673 YNRHQAYLLYDYLPNGNLSEKIRT------------------------------------------KRDWAAKYKIVLGV  710 (872)
Q Consensus       673 ~~~~~~~lv~ey~~~g~L~~~l~~------------------------------------------~~~~~~~~~i~~~i  710 (872)
                      .+.+..++|||||++|+|.+++..                                          ..++.....++.|+
T Consensus        98 ~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  177 (345)
T 3hko_A           98 EDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQI  177 (345)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence            999999999999999999999852                                          01345567899999


Q ss_pred             HHHHHHHhhCCCCCcccCCCCCCCeeeCCCC--CeeEccccccccccccCC------CCcccccccCchhhhcc--cCCc
Q 002875          711 ARGLCFLHHDCYPAIPHGDLKASNIVFDENM--EPHLAEFGFKYLTQLADG------SFPAKIAWTESGEFYNA--MKEE  780 (872)
Q Consensus       711 ~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~--~~ki~dfg~~~~~~~~~~------~~~~~~~~~~~~e~~~~--~~~~  780 (872)
                      ++||+|||+.   +|+||||||+||+++.++  .+||+|||+++.......      ....++..|.+||....  ..++
T Consensus       178 ~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  254 (345)
T 3hko_A          178 FSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYG  254 (345)
T ss_dssp             HHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCC
T ss_pred             HHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCC
Confidence            9999999999   999999999999998766  899999999875432111      12224556788888754  5678


Q ss_pred             ccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHH
Q 002875          781 MYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEA  860 (872)
Q Consensus       781 ~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v  860 (872)
                      .++|||||||++|||+||+.||.......      ....+.........+........+.+++.+||+.||++|||++|+
T Consensus       255 ~~~DiwslG~il~el~~g~~pf~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~  328 (345)
T 3hko_A          255 PKCDAWSAGVLLHLLLMGAVPFPGVNDAD------TISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRA  328 (345)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCCChHH------HHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence            89999999999999999999987543211      111111111111111122234567889999999999999999999


Q ss_pred             HHH
Q 002875          861 LKL  863 (872)
Q Consensus       861 ~~~  863 (872)
                      +++
T Consensus       329 l~h  331 (345)
T 3hko_A          329 LQH  331 (345)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            875

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.7e-38  Score=343.46  Aligned_cols=246  Identities=20%  Similarity=0.227  Sum_probs=184.1

Q ss_pred             chhhhccCCCCCceeeeecC--C--CcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEec-CCeeEEEEc
Q 002875          611 TECEEAARPQSAAGCKAVLP--T--GITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYN-RHQAYLLYD  683 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~--~--g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lv~e  683 (872)
                      ...+.||+|+||.||+|+..  +  +..||||.++..  ....+.+.+|+.++++++|||||+++++|.+ ++..++|||
T Consensus        92 ~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e  171 (373)
T 3c1x_A           92 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLP  171 (373)
T ss_dssp             EEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEE
T ss_pred             ecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEE
Confidence            36688999999999999853  3  346899998643  2346778999999999999999999999764 567899999


Q ss_pred             ccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          684 YLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       684 y~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      |+++|+|.++++..   .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++....... 
T Consensus       172 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~  248 (373)
T 3c1x_A          172 YMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFD  248 (373)
T ss_dssp             CCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC------------
T ss_pred             CCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccccccccc
Confidence            99999999999753   47888899999999999999999   999999999999999999999999999875432211 


Q ss_pred             -----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          760 -----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       760 -----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                           ....++..|.+||......++.++|||||||++|||+||+.|++.........     ...........+.   .
T Consensus       249 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~-----~~~~~~~~~~~p~---~  320 (373)
T 3c1x_A          249 SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT-----VYLLQGRRLLQPE---Y  320 (373)
T ss_dssp             ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHH-----HHHHTTCCCCCCT---T
T ss_pred             cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHH-----HHHHcCCCCCCCC---C
Confidence                 11113345778888888888999999999999999999666554333222111     0111111011111   1


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ....+.+++.+||+.||++|||++|+++.|+.+
T Consensus       321 ~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i  353 (373)
T 3c1x_A          321 CPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI  353 (373)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            224577899999999999999999999999876

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=337.32  Aligned_cols=240  Identities=16%  Similarity=0.120  Sum_probs=194.4

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeee-cCCCcEEEEEEeeccch---------hHHHHHHHHHHhhccCCCCceeEEEEE
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGAT---------RIKIVSEFITRIGTVRHKNLIRLLGFC  672 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~~---------~~~~~~~e~~~l~~l~H~niv~l~~~~  672 (872)
                      +..+.|.  ..+.||+|+||.||+|. ..+|+.||||++.....         ..+.+.+|+.++++++|||||+++++|
T Consensus        21 ~~~~~y~--~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~   98 (335)
T 3dls_A           21 EYSQKYS--TMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIF   98 (335)
T ss_dssp             HHHHHEE--EEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEE
T ss_pred             ccccceE--EEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            4455666  88999999999999998 46899999999975431         234567899999999999999999999


Q ss_pred             ecCCeeEEEEcccCCC-ChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccc
Q 002875          673 YNRHQAYLLYDYLPNG-NLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG  749 (872)
Q Consensus       673 ~~~~~~~lv~ey~~~g-~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg  749 (872)
                      .+.+..++||||+.+| +|.+++...  .++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        99 ~~~~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg  175 (335)
T 3dls_A           99 ENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFG  175 (335)
T ss_dssp             ECSSEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             eeCCEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecc
Confidence            9999999999999877 999999764  57888999999999999999999   99999999999999999999999999


Q ss_pred             ccccccccCCC-CcccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          750 FKYLTQLADGS-FPAKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       750 ~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      +++........ ...++..|.+||...+..+ +.++||||+||++|||+||+.||......        .......    
T Consensus       176 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--------~~~~~~~----  243 (335)
T 3dls_A          176 SAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET--------VEAAIHP----  243 (335)
T ss_dssp             TCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG--------TTTCCCC----
T ss_pred             cceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH--------HhhccCC----
Confidence            99765433221 2225566788888776655 78899999999999999999998642211        0111111    


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       +..   ...++.+++.+||+.||++|||++|++++
T Consensus       244 -~~~---~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          244 -PYL---VSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             -SSC---CCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             -Ccc---cCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             111   12457789999999999999999999986

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-37  Score=338.81  Aligned_cols=247  Identities=18%  Similarity=0.198  Sum_probs=194.0

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|..      .+++.||||.+....  ...+.+.+|+.+++++ +||||+++++++...+..++||
T Consensus        49 ~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~  128 (344)
T 1rjb_A           49 FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIF  128 (344)
T ss_dssp             EEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             eeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEE
Confidence            788999999999999985      356789999997532  2356788999999999 8999999999999999999999


Q ss_pred             cccCCCChHHHhhCC-------------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee
Q 002875          683 DYLPNGNLSEKIRTK-------------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF  737 (872)
Q Consensus       683 ey~~~g~L~~~l~~~-------------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill  737 (872)
                      ||+++|+|.+++...                         .++.+...++.|+++||+|||+.   +|+||||||+||++
T Consensus       129 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll  205 (344)
T 1rjb_A          129 EYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNVLV  205 (344)
T ss_dssp             ECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGEEE
T ss_pred             ecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEE
Confidence            999999999999753                         47788899999999999999999   99999999999999


Q ss_pred             CCCCCeeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcc
Q 002875          738 DENMEPHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKP  812 (872)
Q Consensus       738 ~~~~~~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~  812 (872)
                      +.++.+||+|||++.........    ...++..|.+||......++.++|||||||++|||+| |..||........  
T Consensus       206 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~--  283 (344)
T 1rjb_A          206 THGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN--  283 (344)
T ss_dssp             ETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH--
T ss_pred             cCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHH--
Confidence            99999999999998755433221    1113345778888877788999999999999999999 8888764432110  


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ............   .+.   .....+.+++.+||+.||++|||++|++++|+.+..
T Consensus       284 ~~~~~~~~~~~~---~~~---~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~  334 (344)
T 1rjb_A          284 FYKLIQNGFKMD---QPF---YATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLA  334 (344)
T ss_dssp             HHHHHHTTCCCC---CCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred             HHHHHhcCCCCC---CCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence            001111111110   011   123467789999999999999999999999987654

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=6.9e-38  Score=339.29  Aligned_cols=249  Identities=17%  Similarity=0.223  Sum_probs=191.2

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv  681 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||+++....   ...+|++++.++ +|||||++++++.+++..|+|
T Consensus        20 ~~~~y~--~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv   94 (342)
T 2qr7_A           20 FTDGYE--VKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVV   94 (342)
T ss_dssp             HHHHEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEE--EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEE
Confidence            445566  889999999999999986 5799999999975432   235678888887 799999999999999999999


Q ss_pred             EcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC----CCeeEcccccccccc
Q 002875          682 YDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN----MEPHLAEFGFKYLTQ  755 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~----~~~ki~dfg~~~~~~  755 (872)
                      ||||++|+|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||++.++    +.+||+|||+++...
T Consensus        95 ~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~  171 (342)
T 2qr7_A           95 TELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR  171 (342)
T ss_dssp             ECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence            9999999999999764  57888899999999999999999   99999999999998533    349999999997654


Q ss_pred             ccCC--CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          756 LADG--SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       756 ~~~~--~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                      ....  ....++..|.+||......++.++||||+||++|||+||..||.........   .....+...........+.
T Consensus       172 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~---~~~~~i~~~~~~~~~~~~~  248 (342)
T 2qr7_A          172 AENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPE---EILARIGSGKFSLSGGYWN  248 (342)
T ss_dssp             CTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHH---HHHHHHHHCCCCCCSTTTT
T ss_pred             CCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHH---HHHHHHccCCcccCccccc
Confidence            3222  1223566688889887777888999999999999999999999753221110   1111111111010011112


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....++.+++.+||+.||++|||++|++++
T Consensus       249 ~~s~~~~~li~~~L~~dP~~R~t~~~il~h  278 (342)
T 2qr7_A          249 SVSDTAKDLVSKMLHVDPHQRLTAALVLRH  278 (342)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             cCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            233567789999999999999999999864

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3e-37  Score=326.72  Aligned_cols=248  Identities=16%  Similarity=0.203  Sum_probs=190.5

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      ++.+.|.  ..+.||+|+||.||+|.. .+|+.||||++....  ...+.+.+|++++++++||||+++++++.+.+..+
T Consensus        19 ~i~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   96 (285)
T 3is5_A           19 TIDDLFI--FKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMY   96 (285)
T ss_dssp             CHHHHEE--EEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             Chhhhee--ecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEE
Confidence            3445566  889999999999999985 578999999997543  24578889999999999999999999999999999


Q ss_pred             EEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee---CCCCCeeEccccc
Q 002875          680 LLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGF  750 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill---~~~~~~ki~dfg~  750 (872)
                      +||||+++|+|.+++..      ..++.....++.|+++||+|||+.   +|+||||||+||++   +.++.+||+|||+
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~  173 (285)
T 3is5_A           97 IVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGL  173 (285)
T ss_dssp             EEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCC
T ss_pred             EEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeec
Confidence            99999999999998853      468888999999999999999999   99999999999999   4567899999999


Q ss_pred             cccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCC
Q 002875          751 KYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       751 ~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      ++....... ....++..|.+||... ..++.++||||+||++|||+||+.||........      ........ ....
T Consensus       174 a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~------~~~~~~~~-~~~~  245 (285)
T 3is5_A          174 AELFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEV------QQKATYKE-PNYA  245 (285)
T ss_dssp             CCC----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHCC-CCCC
T ss_pred             ceecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHH------HhhhccCC-cccc
Confidence            976443222 2223556678888775 4578899999999999999999999875321110      00000000 0000


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........++.+++.+||+.||++|||++|++++
T Consensus       246 ~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  279 (285)
T 3is5_A          246 VECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH  279 (285)
T ss_dssp             C--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred             cccCcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0001122457789999999999999999999864

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.3e-37  Score=338.11  Aligned_cols=238  Identities=13%  Similarity=0.093  Sum_probs=194.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|+.++++++|||||++++++.+.+..|+||||++
T Consensus        45 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~  124 (350)
T 1rdq_E           45 RIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVA  124 (350)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCC
Confidence            889999999999999986 579999999997532    235677889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ...+
T Consensus       125 gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~-~~~g  200 (350)
T 1rdq_E          125 GGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW-TLCG  200 (350)
T ss_dssp             TCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC-CCEE
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCCcc-cccC
Confidence            9999999975  467888999999999999999999   999999999999999999999999999976543322 2335


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||...+..++.++||||+||++|||+||..||.......      ....+.... ...+.   .....+.+++.
T Consensus       201 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~~~~~~~li~  270 (350)
T 1rdq_E          201 TPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ------IYEKIVSGK-VRFPS---HFSSDLKDLLR  270 (350)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TCCHHHHHHHH
T ss_pred             CccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH------HHHHHHcCC-CCCCC---CCCHHHHHHHH
Confidence            667888998888888999999999999999999999987543211      111111111 11111   12345778999


Q ss_pred             HcccCCCCCCCC-----HHHHHHH
Q 002875          845 LCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      +||+.||++||+     ++|++++
T Consensus       271 ~lL~~dp~~R~~~~~~~~~ei~~h  294 (350)
T 1rdq_E          271 NLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             HHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             HHhhcCHHhccCCccCCHHHHHhC
Confidence            999999999998     8888764

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.7e-38  Score=334.71  Aligned_cols=240  Identities=18%  Similarity=0.141  Sum_probs=184.9

Q ss_pred             hhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccc---hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA---TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ..+.||+|+||.||+|... +|+.||||++....   ........|+..+.++ +|||||+++++|.+.+..|+
T Consensus        57 ~~y~--~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l  134 (311)
T 3p1a_A           57 QSFQ--RLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL  134 (311)
T ss_dssp             HHEE--EEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhee--eeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence            4566  8899999999999999874 79999999986432   2233444555555554 89999999999999999999


Q ss_pred             EEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          681 LYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      ||||+ +|+|.+++..   ..++.+++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       135 v~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~  210 (311)
T 3p1a_A          135 QTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA  210 (311)
T ss_dssp             EEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred             EEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence            99999 6799998864   468999999999999999999999   9999999999999999999999999998765432


Q ss_pred             CC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          758 DG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       758 ~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      .. ....++..|.+||+..+ .++.++|||||||++|||+||+.|+.......     ........+      .......
T Consensus       211 ~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~-----~~~~~~~~~------~~~~~~~  278 (311)
T 3p1a_A          211 GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQ-----QLRQGYLPP------EFTAGLS  278 (311)
T ss_dssp             ----CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHH-----HHTTTCCCH------HHHTTSC
T ss_pred             CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHH-----HHhccCCCc------ccccCCC
Confidence            22 12235566788888765 68889999999999999999988776432110     000000000      0011223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .++.+++.+||+.||++|||++|++++
T Consensus       279 ~~l~~li~~~L~~dP~~Rpt~~ell~h  305 (311)
T 3p1a_A          279 SELRSVLVMMLEPDPKLRATAEALLAL  305 (311)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence            568899999999999999999999875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=4.8e-38  Score=333.85  Aligned_cols=243  Identities=18%  Similarity=0.241  Sum_probs=191.0

Q ss_pred             hhhhccCCCCCceeeeecC-CC-------cEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLP-TG-------ITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g-------~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|... +|       +.||+|.+.... ...+.+.+|++++++++|||||++++++.+++..++||
T Consensus        12 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   91 (289)
T 4fvq_A           12 FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQ   91 (289)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEE
T ss_pred             eeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEE
Confidence            7889999999999999853 33       579999996543 34677899999999999999999999999999999999


Q ss_pred             cccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC--------eeEcccccc
Q 002875          683 DYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME--------PHLAEFGFK  751 (872)
Q Consensus       683 ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~--------~ki~dfg~~  751 (872)
                      ||+++|+|.+++...   .++..+..++.|++.||+|||+.   +|+||||||+||+++.++.        +||+|||++
T Consensus        92 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~  168 (289)
T 4fvq_A           92 EFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS  168 (289)
T ss_dssp             ECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSC
T ss_pred             ECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeeeccCccc
Confidence            999999999999753   67888999999999999999999   9999999999999998877        999999998


Q ss_pred             ccccccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          752 YLTQLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       752 ~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      .......  ...+...|.+||.... ..++.++||||+||++|||+||+.|+..........  .....   ....  +.
T Consensus       169 ~~~~~~~--~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~--~~~~~---~~~~--~~  239 (289)
T 4fvq_A          169 ITVLPKD--ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKL--QFYED---RHQL--PA  239 (289)
T ss_dssp             TTTSCHH--HHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH--HHHHT---TCCC--CC
T ss_pred             ccccCcc--ccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHH--HHhhc---cCCC--CC
Confidence            6432211  1123345778887765 678899999999999999999877766443211100  00000   0000  00


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .   ...++.+++.+||+.||++|||++|++++|+.+..
T Consensus       240 ~---~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~  275 (289)
T 4fvq_A          240 P---KAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT  275 (289)
T ss_dssp             C---SSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred             C---CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            0   12346788899999999999999999999988743

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.4e-37  Score=328.42  Aligned_cols=243  Identities=19%  Similarity=0.269  Sum_probs=194.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.+|+|+||.||+|...+++.||||.+.......+.+.+|++++++++||||+++++++.+ +..++||||+++|+|.
T Consensus        17 ~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~~~L~   95 (279)
T 1qpc_A           17 LVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLV   95 (279)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHH
T ss_pred             heeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecCCCCCHH
Confidence            788999999999999998888899999998766667788999999999999999999999864 5689999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---CCccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---SFPAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~~~~~  764 (872)
                      +++..    ..++.+...++.|+++||+|||+.   +|+||||||+||++++++.+||+|||++........   ....+
T Consensus        96 ~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~  172 (279)
T 1qpc_A           96 DFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF  172 (279)
T ss_dssp             HHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCC
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCC
Confidence            99975    468889999999999999999999   999999999999999999999999999876433211   11112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||......++.++||||+||++|||+| |..||.+.....      ....+........+.   ....++.+++
T Consensus       173 ~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~l~~li  243 (279)
T 1qpc_A          173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE------VIQNLERGYRMVRPD---NCPEELYQLM  243 (279)
T ss_dssp             CTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH------HHHHHHTTCCCCCCT---TCCHHHHHHH
T ss_pred             ccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH------HHHHHhcccCCCCcc---cccHHHHHHH
Confidence            335778888877778889999999999999999 777775432111      000111100001111   1234677899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHccc
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+||+.||++|||++++++.|+.+
T Consensus       244 ~~~l~~~p~~Rps~~~l~~~l~~~  267 (279)
T 1qpc_A          244 RLCWKERPEDRPTFDYLRSVLEDF  267 (279)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHhccChhhCCCHHHHHHHHHHH
Confidence            999999999999999999999765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.3e-37  Score=343.93  Aligned_cols=406  Identities=22%  Similarity=0.291  Sum_probs=204.4

Q ss_pred             CccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCC
Q 002875           35 PVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFK  114 (872)
Q Consensus        35 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~  114 (872)
                      |+.+. .++|++|++++|.+ +.+|++|+.+++|++|++++|.+.+.+|.+++++.+|+++++.+|..           .
T Consensus         5 p~~~~-~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~   71 (454)
T 1jl5_A            5 PRNVS-NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------R   71 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------H
T ss_pred             ccccc-cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------c
Confidence            44443 57788888888877 56777777888888888877777777777777777765555544421           3


Q ss_pred             CCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEcc
Q 002875          115 SLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLF  194 (872)
Q Consensus       115 ~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~  194 (872)
                      ++++|++++|.+++. |.   ..++|++|++++|.+.+ +|..   +++|++|++++|.+.+ +|..   .++|++|+++
T Consensus        72 ~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~  139 (454)
T 1jl5_A           72 QAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS  139 (454)
T ss_dssp             TCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred             CCCEEEecCCccccC-CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECc
Confidence            456677777766542 22   12556666666666655 4432   3677788888887764 2221   1578888888


Q ss_pred             CCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccC
Q 002875          195 RNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSL  274 (872)
Q Consensus       195 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  274 (872)
                      +|++++ +| +|..+++|++|++++|++++ +|..+   .+|++|++++|++.+ +| .+..+++|++|++++|.+++ +
T Consensus       140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l  210 (454)
T 1jl5_A          140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L  210 (454)
T ss_dssp             SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred             CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence            888876 45 57888888888888888875 44433   478888888888876 44 57778888888888888775 3


Q ss_pred             CccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCC
Q 002875          275 PENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLP  354 (872)
Q Consensus       275 p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  354 (872)
                      |...   .+|+.|++++|.+. .+| .+..+..++.+++.+|++.+. |.   .+++|+.|++++|++++ +|..   .+
T Consensus       211 ~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~  277 (454)
T 1jl5_A          211 PDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQ  277 (454)
T ss_dssp             CCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             CCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cC
Confidence            4322   46778888877776 555 355666667777777666642 22   23566677777776664 2322   35


Q ss_pred             CCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCC-cccccccccccccCCCCCCCCcCCccceeec
Q 002875          355 DINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSL-PSLQNFSASACNITGNLPPFKSCKSISVIES  433 (872)
Q Consensus       355 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l  433 (872)
                      +|++|++++|.+++. |..   .++|++|++++|... + ++    .+ ++|+.|++++|.+++ +|..  +++|+.+++
T Consensus       278 ~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~-~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--~~~L~~L~L  344 (454)
T 1jl5_A          278 SLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIR-S-LC----DLPPSLEELNVSNNKLIE-LPAL--PPRLERLIA  344 (454)
T ss_dssp             TCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCS-E-EC----CCCTTCCEEECCSSCCSC-CCCC--CTTCCEEEC
T ss_pred             cCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCC-c-cc----CCcCcCCEEECCCCcccc-cccc--CCcCCEEEC
Confidence            666667766666541 110   145666666666321 1 11    11 245555555555443 2221  234444444


Q ss_pred             cccccCCCCCCcccccccCcEEEccCcccee--ccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeee
Q 002875          434 HMNNLSGTIPESVSNCVELERIDLANNKLIG--SIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDIS  511 (872)
Q Consensus       434 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  511 (872)
                      +.|.+++ +|.   .+++|++|++++|++++  .+|..+..        ++.|.+.+.+|..   +++|++|++++|+++
T Consensus       345 ~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          345 SFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLR  409 (454)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------------
T ss_pred             CCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCC
Confidence            4444442 332   23444444444444444  22322211        1123333333321   278889999999988


Q ss_pred             e--cCC
Q 002875          512 G--SIP  515 (872)
Q Consensus       512 ~--~~p  515 (872)
                      +  .+|
T Consensus       410 ~~~~iP  415 (454)
T 1jl5_A          410 EFPDIP  415 (454)
T ss_dssp             ------
T ss_pred             ccccch
Confidence            7  555

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.8e-37  Score=329.30  Aligned_cols=244  Identities=21%  Similarity=0.268  Sum_probs=197.2

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.||+|+||.||+|... +|+.||||.+.......+.+.+|++++++++||||+++++++.+++..++||||+++|+|
T Consensus        17 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   96 (288)
T 3kfa_A           17 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL   96 (288)
T ss_dssp             EEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEH
T ss_pred             EEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcH
Confidence            7889999999999999864 588999999987766778899999999999999999999999999999999999999999


Q ss_pred             HHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---cc
Q 002875          691 SEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PA  763 (872)
Q Consensus       691 ~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~  763 (872)
                      .+++..    ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++..........   ..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~  173 (288)
T 3kfa_A           97 LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK  173 (288)
T ss_dssp             HHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEE
T ss_pred             HHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCc
Confidence            999964    357888999999999999999999   99999999999999999999999999987654322111   11


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      +...|.+||......++.++||||+||++|||+| |..||.......   ..........   ...+   ......+.++
T Consensus       174 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~---~~~~~~~~~~---~~~~---~~~~~~l~~l  244 (288)
T 3kfa_A          174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---VYELLEKDYR---MERP---EGCPEKVYEL  244 (288)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHHHHHTTCC---CCCC---TTCCHHHHHH
T ss_pred             cccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHhccCC---CCCC---CCCCHHHHHH
Confidence            2345778898887888999999999999999999 777765432111   0011111111   1111   1123467789


Q ss_pred             HHHcccCCCCCCCCHHHHHHHHccc
Q 002875          843 ALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +.+||+.||++|||++|+++.|+.+
T Consensus       245 i~~~l~~dp~~Rps~~~~~~~l~~~  269 (288)
T 3kfa_A          245 MRACWQWNPSDRPSFAEIHQAFETM  269 (288)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHhCCChhhCcCHHHHHHHHHHH
Confidence            9999999999999999999998765

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=328.03  Aligned_cols=243  Identities=19%  Similarity=0.250  Sum_probs=178.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ..+.+|+|+||.||+|+. .+|+.||||.+.....    ..+.+.+|+.++++++||||+++++++.+.+..++
T Consensus        11 ~~y~--~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (278)
T 3cok_A           11 EDFK--VGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL   88 (278)
T ss_dssp             GGEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred             ccce--eeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence            3455  889999999999999986 6899999999975322    24678899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          681 LYDYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      ||||+++|+|.+++...   .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~  165 (278)
T 3cok_A           89 VLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP  165 (278)
T ss_dssp             EEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred             EEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence            99999999999999763   57889999999999999999999   9999999999999999999999999998754322


Q ss_pred             CC--CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          758 DG--SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       758 ~~--~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      ..  ....++..|.+||......++.++||||+||++|||+||+.||........      ........ ...+.   ..
T Consensus       166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~~~-~~~~~---~~  235 (278)
T 3cok_A          166 HEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT------LNKVVLAD-YEMPS---FL  235 (278)
T ss_dssp             --------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----------CCSSC-CCCCT---TS
T ss_pred             CCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH------HHHHhhcc-cCCcc---cc
Confidence            11  112245567788888777788999999999999999999999875432111      01111100 00011   12


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..++.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~li~~~l~~dp~~Rps~~~~l~h  263 (278)
T 3cok_A          236 SIEAKDLIHQLLRRNPADRLSLSSVLDH  263 (278)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence            2457789999999999999999999874

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.8e-37  Score=327.56  Aligned_cols=240  Identities=16%  Similarity=0.206  Sum_probs=190.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++.....    ..+.+.+|++++++++||||+++++++.+.+..++||||++
T Consensus        13 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   92 (279)
T 3fdn_A           13 IGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAP   92 (279)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCC
Confidence            788999999999999985 5678999999965321    24568899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++............+
T Consensus        93 ~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~  169 (279)
T 3fdn_A           93 LGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCG  169 (279)
T ss_dssp             TEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC--------CC
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCcccccccCC
Confidence            9999999875  467888999999999999999998   99999999999999999999999999986543332223335


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ...|.+||...+..++.++||||+||++|||+||..||.......      ....+.... ...+.   .....+.+++.
T Consensus       170 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~-~~~~~---~~~~~~~~li~  239 (279)
T 3fdn_A          170 TLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE------TYKRISRVE-FTFPD---FVTEGARDLIS  239 (279)
T ss_dssp             CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHTC-CCCCT---TSCHHHHHHHH
T ss_pred             CCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH------HHHHHHhCC-CCCCC---cCCHHHHHHHH
Confidence            566788898888888899999999999999999999986432111      001111100 01111   12245678899


Q ss_pred             HcccCCCCCCCCHHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      +||+.||++|||++|++++-
T Consensus       240 ~~l~~~p~~Rps~~e~l~h~  259 (279)
T 3fdn_A          240 RLLKHNPSQRPMLREVLEHP  259 (279)
T ss_dssp             HHCCSSGGGSCCHHHHHHCH
T ss_pred             HHhccChhhCCCHHHHhhCc
Confidence            99999999999999999753

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.8e-37  Score=327.77  Aligned_cols=244  Identities=16%  Similarity=0.175  Sum_probs=183.8

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|...    .+..||||.+....  ...+.+.+|+.++++++|||||++++++. ++..|+||||+
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~   97 (281)
T 1mp8_A           19 LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELC   97 (281)
T ss_dssp             EEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             EEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEEEecC
Confidence            7889999999999999863    35679999986532  23567889999999999999999999984 46789999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      ++|+|.+++..   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++........  
T Consensus        98 ~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  174 (281)
T 1mp8_A           98 TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA  174 (281)
T ss_dssp             TTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC---------------
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccCccccccc
Confidence            99999999974   357889999999999999999999   9999999999999999999999999998765332211  


Q ss_pred             -CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          761 -FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       ...+...|.+||......++.++||||+||++|||+| |..||.......      ....+........++   .....
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~------~~~~i~~~~~~~~~~---~~~~~  245 (281)
T 1mp8_A          175 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND------VIGRIENGERLPMPP---NCPPT  245 (281)
T ss_dssp             ----CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG------HHHHHHTTCCCCCCT---TCCHH
T ss_pred             ccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH------HHHHHHcCCCCCCCC---CCCHH
Confidence             1113345778898887888999999999999999997 777776433211      111111111111111   22346


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.||++|||++|++++|+.+.
T Consensus       246 l~~li~~~l~~~p~~Rps~~~l~~~l~~~~  275 (281)
T 1mp8_A          246 LYSLMTKCWAYDPSRRPRFTELKAQLSTIL  275 (281)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            778999999999999999999999998763

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=1.5e-37  Score=335.65  Aligned_cols=246  Identities=21%  Similarity=0.270  Sum_probs=189.8

Q ss_pred             chhhhccCCCCCceeeeec-CCCcE----EEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGIT----VSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~----vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ...+.||+|+||.||+|.. .+|+.    ||+|.+....  ...+.+.+|+.++++++|||||+++++|. .+..++|||
T Consensus        16 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e   94 (325)
T 3kex_A           16 RKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLVTQ   94 (325)
T ss_dssp             EEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEEEE
T ss_pred             eeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEEEE
Confidence            3788999999999999985 45654    7777775332  22456678899999999999999999986 456899999


Q ss_pred             ccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          684 YLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       684 y~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      |+++|+|.+++..   ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........
T Consensus        95 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~  171 (325)
T 3kex_A           95 YLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQ  171 (325)
T ss_dssp             CCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTC
T ss_pred             eCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccCccccc
Confidence            9999999999975   357788999999999999999999   9999999999999999999999999999765432221


Q ss_pred             ----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          761 ----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       761 ----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                          ...+...|.+||......++.++|||||||++|||+| |+.||........   .......   .....+..   .
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~---~~~~~~~---~~~~~~~~---~  242 (325)
T 3kex_A          172 LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEV---PDLLEKG---ERLAQPQI---C  242 (325)
T ss_dssp             CC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHH---HHHHHTT---CBCCCCTT---B
T ss_pred             ccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHH---HHHHHcC---CCCCCCCc---C
Confidence                1223445788898888889999999999999999999 8888864332110   0000000   00000111   1


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ...+.+++.+||+.||++|||++|++++|+.+..
T Consensus       243 ~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          243 TIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             CTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            2346688899999999999999999999987653

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2.1e-37  Score=333.03  Aligned_cols=245  Identities=18%  Similarity=0.227  Sum_probs=195.1

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|+.      .+|+.||||++....  ...+.+.+|+.+++++ +||||++++++|.+++..++||
T Consensus        27 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~  106 (313)
T 1t46_A           27 FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT  106 (313)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             HHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEE
Confidence            788999999999999973      567899999997543  3456788999999999 9999999999999999999999


Q ss_pred             cccCCCChHHHhhCC--------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          683 DYLPNGNLSEKIRTK--------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       683 ey~~~g~L~~~l~~~--------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      ||+++|+|.+++...                    .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.
T Consensus       107 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~  183 (313)
T 1t46_A          107 EYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRI  183 (313)
T ss_dssp             ECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETTTE
T ss_pred             ecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEcCCCC
Confidence            999999999999652                    57888999999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccc
Q 002875          743 PHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~  817 (872)
                      +||+|||+++........    ...++..|.+||......++.++||||+||++|||+| |..||........  .....
T Consensus       184 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~--~~~~~  261 (313)
T 1t46_A          184 TKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK--FYKMI  261 (313)
T ss_dssp             EEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH--HHHHH
T ss_pred             EEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH--HHHHh
Confidence            999999998765433221    1123345778888877788999999999999999999 7777754322110  00111


Q ss_pred             cccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          818 GEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .......   ..   ......+.+++.+||+.||++|||++|++++|+.+
T Consensus       262 ~~~~~~~---~~---~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~  305 (313)
T 1t46_A          262 KEGFRML---SP---EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ  305 (313)
T ss_dssp             HHTCCCC---CC---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ccCCCCC---Cc---ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHH
Confidence            1111110   01   11234677899999999999999999999999865

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1e-37  Score=333.01  Aligned_cols=248  Identities=10%  Similarity=0.004  Sum_probs=195.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++.... ..+.+.+|+.+++++ +|+|++++++++.+....++||||+ +|+
T Consensus        14 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~   91 (298)
T 1csn_A           14 VGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPS   91 (298)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCB
T ss_pred             EEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCC
Confidence            889999999999999994 789999999986432 344577889999998 7999999999999999999999999 999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC-----eeEccccccccccccCC--
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME-----PHLAEFGFKYLTQLADG--  759 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~-----~ki~dfg~~~~~~~~~~--  759 (872)
                      |.+++..   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.     +||+|||+++.......  
T Consensus        92 L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  168 (298)
T 1csn_A           92 LEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQ  168 (298)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCC
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccc
Confidence            9999974   468899999999999999999999   9999999999999987776     99999999976543221  


Q ss_pred             -------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCC-CCc
Q 002875          760 -------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS-SSS  831 (872)
Q Consensus       760 -------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  831 (872)
                             ....++..|.+||...+..++.++|||||||++|||+||+.||...........   ...+........ ...
T Consensus       169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~  245 (298)
T 1csn_A          169 HIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQK---YERIGEKKQSTPLREL  245 (298)
T ss_dssp             BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHH---HHHHHHHHHHSCHHHH
T ss_pred             cccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHH---HHHHHhhccCccHHHH
Confidence                   112245567888988888889999999999999999999999875432211110   001100000000 000


Q ss_pred             hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          832 LQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       832 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ......++.+++.+||+.||++|||++++++.|+.+
T Consensus       246 ~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~  281 (298)
T 1csn_A          246 CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV  281 (298)
T ss_dssp             TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred             HhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHH
Confidence            012235678899999999999999999999999765

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.2e-37  Score=336.32  Aligned_cols=242  Identities=14%  Similarity=0.121  Sum_probs=186.0

Q ss_pred             hcCcchhhhccCCCCCceeeeec----CCCcEEEEEEeeccc-----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCe
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGA-----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ  677 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  677 (872)
                      .|.  ..+.||+|+||.||+|..    .+|+.||||+++...     .....+.+|+.++++++|||||++++++.+.+.
T Consensus        18 ~y~--~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           18 CFE--LLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GEE--EEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HeE--EEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            355  889999999999999986    589999999997542     234567789999999999999999999999999


Q ss_pred             eEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      .|+|||||++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~  172 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKESI  172 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC----
T ss_pred             EEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCcccccc
Confidence            9999999999999999965  457888889999999999999999   99999999999999999999999999986532


Q ss_pred             ccC--CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          756 LAD--GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       756 ~~~--~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                      ...  .....++..|.+||......++.++||||+||++|||+||+.||.......      ....+.... ...++   
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~------~~~~i~~~~-~~~p~---  242 (327)
T 3a62_A          173 HDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK------TIDKILKCK-LNLPP---  242 (327)
T ss_dssp             ------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHTC-CCCCT---
T ss_pred             cCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhCC-CCCCC---
Confidence            221  122235566888898888788999999999999999999999987543211      111111111 11111   


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-----CHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      .....+.+++.+||+.||++||     +++|++++
T Consensus       243 ~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h  277 (327)
T 3a62_A          243 YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH  277 (327)
T ss_dssp             TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred             CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence            1234577899999999999999     78888764

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=2.5e-37  Score=331.91  Aligned_cols=253  Identities=14%  Similarity=0.167  Sum_probs=189.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..|.  ..+.||+|+||.||+|.. .+|+.||||++...    ....+.+.+|+.++++++||||+++++++.+.+..++
T Consensus        32 ~~y~--~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l  109 (310)
T 2wqm_A           32 ANFR--IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI  109 (310)
T ss_dssp             GGEE--EEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceE--EEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence            3455  889999999999999985 68999999999742    2345678899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          681 LYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ||||+++|+|.+++..      ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus       110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~  186 (310)
T 2wqm_A          110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF  186 (310)
T ss_dssp             EEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred             EEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence            9999999999999853      357888999999999999999999   9999999999999999999999999998754


Q ss_pred             cccCCC--CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          755 QLADGS--FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       755 ~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                      ......  ...+...|.+||......++.++|||||||++|||+||+.||........ ........   .......  .
T Consensus       187 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~~---~~~~~~~--~  260 (310)
T 2wqm_A          187 SSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY-SLCKKIEQ---CDYPPLP--S  260 (310)
T ss_dssp             ------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHH-HHHHHHHT---TCSCCCC--T
T ss_pred             cCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHH-HHHHHhhc---ccCCCCc--c
Confidence            332211  12245567888988877889999999999999999999999875432110 00000000   0000000  0


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .....++.+++.+||+.||++|||++|+++.|+.+++
T Consensus       261 ~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~  297 (310)
T 2wqm_A          261 DHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHA  297 (310)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence            1123457789999999999999999999999988754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=8.7e-38  Score=359.37  Aligned_cols=245  Identities=17%  Similarity=0.214  Sum_probs=196.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|....+..||||+++......+.+.+|+++|++++|||||+++++|.+ +..|+|||||++|+|.
T Consensus       271 ~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~gsL~  349 (535)
T 2h8h_A          271 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLL  349 (535)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTEEHH
T ss_pred             hheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcCCcHH
Confidence            778999999999999999888899999998766667789999999999999999999999976 6789999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCCccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSFPAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~~~~  764 (872)
                      ++++.    ..++.+...++.||++||+|||+.   +|+||||||+|||++.++.+||+|||+++......   .....+
T Consensus       350 ~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~  426 (535)
T 2h8h_A          350 DFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF  426 (535)
T ss_dssp             HHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTS
T ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcC
Confidence            99974    368899999999999999999999   99999999999999999999999999997643211   111112


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ...|.+||......++.++|||||||++|||+| |+.||.+.....      ....+........+.   .....+.+++
T Consensus       427 ~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~------~~~~i~~~~~~~~~~---~~~~~l~~li  497 (535)
T 2h8h_A          427 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE------VLDQVERGYRMPCPP---ECPESLHDLM  497 (535)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH------HHHHHHTTCCCCCCT---TCCHHHHHHH
T ss_pred             cccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH------HHHHHHcCCCCCCCC---CCCHHHHHHH
Confidence            234677888877788999999999999999999 777775432111      111111111011111   2234577899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .+||+.||++|||++++++.|+.+..
T Consensus       498 ~~cl~~dP~~RPt~~~l~~~L~~~~~  523 (535)
T 2h8h_A          498 CQCWRKEPEERPTFEYLQAFLEDYFT  523 (535)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHTSSC
T ss_pred             HHHcCCChhHCcCHHHHHHHHHHHhh
Confidence            99999999999999999999988743

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.9e-37  Score=334.88  Aligned_cols=245  Identities=17%  Similarity=0.216  Sum_probs=183.3

Q ss_pred             hhhhccCCCCCceeeeecCC-C---cEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCee------
Q 002875          612 ECEEAARPQSAAGCKAVLPT-G---ITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA------  678 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-g---~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~------  678 (872)
                      ..+.||+|+||.||+|.... +   ..||||+++..   ....+.+.+|++++++++|||||++++++...+..      
T Consensus        27 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~  106 (323)
T 3qup_A           27 LGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIP  106 (323)
T ss_dssp             EEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CE
T ss_pred             EeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCcc
Confidence            88999999999999998643 3   27999999753   33467788999999999999999999999876654      


Q ss_pred             EEEEcccCCCChHHHhhC--------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT--------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~--------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                      ++||||+++|+|.+++..        ..++.++..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus       107 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl~Dfg~  183 (323)
T 3qup_A          107 MVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVADFGL  183 (323)
T ss_dssp             EEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred             EEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEEeeccc
Confidence            999999999999999853        367889999999999999999999   999999999999999999999999999


Q ss_pred             cccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccc
Q 002875          751 KYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENE  825 (872)
Q Consensus       751 ~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  825 (872)
                      ++........    ...+...|.+||......++.++||||+||++|||+| |..||.......      ..........
T Consensus       184 a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~------~~~~~~~~~~  257 (323)
T 3qup_A          184 SRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE------IYNYLIGGNR  257 (323)
T ss_dssp             -----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG------HHHHHHTTCC
T ss_pred             cccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH------HHHHHhcCCC
Confidence            8754332211    1112345778888888888999999999999999999 677765433211      1111111110


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ....   ......+.+++.+||+.||++|||++|+++.|+.+.
T Consensus       258 ~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l  297 (323)
T 3qup_A          258 LKQP---PECMEEVYDLMYQCWSADPKQRPSFTCLRMELENIL  297 (323)
T ss_dssp             CCCC---TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCC---CccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            1111   122346788999999999999999999999998764

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=7e-38  Score=348.66  Aligned_cols=243  Identities=16%  Similarity=0.088  Sum_probs=191.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++....    ..+.+.+|+.++++++|||||+++++|.+++..|+|||||+
T Consensus        78 ~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~  157 (437)
T 4aw2_A           78 ILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYV  157 (437)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCC
Confidence            889999999999999996 4588999999975321    23347889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---C
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---S  760 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~  760 (872)
                      +|+|.+++..   ..++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.......   .
T Consensus       158 gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~  234 (437)
T 4aw2_A          158 GGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSS  234 (437)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECC
T ss_pred             CCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccc
Confidence            9999999975   457888899999999999999999   999999999999999999999999999965433221   1


Q ss_pred             CcccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc-ccCCCCchHH
Q 002875          761 FPAKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQD  834 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  834 (872)
                      ...++.+|.+||+..     ...++.++||||+||++|||+||+.||.+.....      ....+.... ....+.....
T Consensus       235 ~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~------~~~~i~~~~~~~~~p~~~~~  308 (437)
T 4aw2_A          235 VAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE------TYGKIMNHKERFQFPTQVTD  308 (437)
T ss_dssp             SCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHTHHHHCCCCSSCCC
T ss_pred             cccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH------HHHhhhhccccccCCccccc
Confidence            234667788888875     4467889999999999999999999997543211      111111100 0000111112


Q ss_pred             HHHHHHHHHHHcccCCCCC--CCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSD--RPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~--Rpt~~~v~~~  863 (872)
                      ...++.+++.+|+..+|++  ||+++|++++
T Consensus       309 ~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          309 VSENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             SCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             CCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence            2346778889999888888  9999999875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=2.9e-37  Score=334.83  Aligned_cols=244  Identities=21%  Similarity=0.271  Sum_probs=191.7

Q ss_pred             hhhhccCCCCCceeeeec--------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL--------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.||+|+||.||+|..        .+++.||||++....  ...+.+.+|+++++++ +||||++++++|.+.+..++
T Consensus        39 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  118 (334)
T 2pvf_A           39 LGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYV  118 (334)
T ss_dssp             EEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEE
T ss_pred             EeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEE
Confidence            788999999999999975        457899999997543  3356788999999999 89999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          681 LYDYLPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      ||||+++|+|.+++...                  .++.++..++.|+++||+|||+.   +|+||||||+||+++.++.
T Consensus       119 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~  195 (334)
T 2pvf_A          119 IVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNV  195 (334)
T ss_dssp             EEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred             EEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEEcCCCC
Confidence            99999999999999753                  57888899999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccc
Q 002875          743 PHLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~  817 (872)
                      +||+|||+++.......    ....+...|.+||......++.++|||||||++|||+| |+.||.......      ..
T Consensus       196 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~------~~  269 (334)
T 2pvf_A          196 MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE------LF  269 (334)
T ss_dssp             EEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH------HH
T ss_pred             EEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHH------HH
Confidence            99999999875433211    11123344778888877778899999999999999999 777776432110      00


Q ss_pred             cccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          818 GEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+........+.   .....+.+++.+||+.||++|||++|+++.|+++
T Consensus       270 ~~~~~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l  316 (334)
T 2pvf_A          270 KLLKEGHRMDKPA---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  316 (334)
T ss_dssp             HHHHHTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCCCc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            1111110011111   1234577899999999999999999999999876

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=7.8e-38  Score=344.37  Aligned_cols=246  Identities=11%  Similarity=-0.019  Sum_probs=173.0

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc--CCCCceeEE-------EEEecC
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV--RHKNLIRLL-------GFCYNR  675 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l--~H~niv~l~-------~~~~~~  675 (872)
                      |...+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|+.+++.+  +|||||+++       +++..+
T Consensus        64 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~  143 (371)
T 3q60_A           64 LKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQ  143 (371)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEET
T ss_pred             eeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecC
Confidence            33889999999999999995 589999999998643    3355677885544444  699988855       444432


Q ss_pred             -----------------CeeEEEEcccCCCChHHHhhC---CCCHHHH------HHHHHHHHHHHHHHhhCCCCCcccCC
Q 002875          676 -----------------HQAYLLYDYLPNGNLSEKIRT---KRDWAAK------YKIVLGVARGLCFLHHDCYPAIPHGD  729 (872)
Q Consensus       676 -----------------~~~~lv~ey~~~g~L~~~l~~---~~~~~~~------~~i~~~i~~gl~~lH~~~~~~i~Hrd  729 (872)
                                       ...|+|||||+ |+|.+++..   ...+..+      ..++.|+++||+|||+.   +|+|||
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~ivHrD  219 (371)
T 3q60_A          144 SQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSK---GLVHGH  219 (371)
T ss_dssp             TSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEEETT
T ss_pred             CCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCccCc
Confidence                             33799999999 899999975   2344455      67789999999999999   999999


Q ss_pred             CCCCCeeeCCCCCeeEccccccccccccCCCCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCC
Q 002875          730 LKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSS  807 (872)
Q Consensus       730 lk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~  807 (872)
                      |||+|||++.++.+||+|||+++...........+ ..|++||....  ..++.++|||||||++|||+||+.||.....
T Consensus       220 ikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t-~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~  298 (371)
T 3q60_A          220 FTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVP-VTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTP  298 (371)
T ss_dssp             CSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSC-GGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCT
T ss_pred             CCHHHEEECCCCCEEEEecceeeecCCCccCccCC-cCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCc
Confidence            99999999999999999999997654322122223 66888898876  6789999999999999999999999985532


Q ss_pred             CCCccccc-cccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          808 LQNKPIDG-LLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       808 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      ........ ......... . ..+........+.+++.+||+.||++|||++|+++
T Consensus       299 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          299 GIKGSWKRPSLRVPGTDS-L-AFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             TCTTCCCBCCTTSCCCCS-C-CCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             ccccchhhhhhhhccccc-c-chhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            21111110 000000000 0 01111123356788999999999999999999975

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=331.30  Aligned_cols=252  Identities=19%  Similarity=0.209  Sum_probs=188.6

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc------hhHHHHHHHHHHhhccC---CCCceeEEEEEecC
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA------TRIKIVSEFITRIGTVR---HKNLIRLLGFCYNR  675 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~------~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~  675 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++....      .....+.+|++++++++   |||||+++++|...
T Consensus         9 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            9 SRYE--PVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             -CCE--EEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cceE--EEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            3455  889999999999999995 679999999986422      11345666777776654   99999999999865


Q ss_pred             C-----eeEEEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEc
Q 002875          676 H-----QAYLLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA  746 (872)
Q Consensus       676 ~-----~~~lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~  746 (872)
                      .     ..++||||++ |+|.+++...    .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~  162 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLA  162 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEEC
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEe
Confidence            4     5899999997 5999999763    57889999999999999999999   99999999999999999999999


Q ss_pred             cccccccccccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------
Q 002875          747 EFGFKYLTQLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------  810 (872)
Q Consensus       747 dfg~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------  810 (872)
                      |||+++........ ...++.+|.+||......++.++||||+||++|||+||+.||........               
T Consensus       163 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~  242 (308)
T 3g33_A          163 DFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDD  242 (308)
T ss_dssp             SCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTT
T ss_pred             eCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhh
Confidence            99999765433222 22356678889998888899999999999999999999999864332110               


Q ss_pred             cccccccc-ccccccccCC-CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          811 KPIDGLLG-EMYNENEVGS-SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       811 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++...... ....+..... ....++....+.+++.+||+.||++|||++|++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          243 WPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             SCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence            00000000 0000000000 00001223567889999999999999999999875

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.8e-37  Score=336.87  Aligned_cols=239  Identities=15%  Similarity=0.113  Sum_probs=191.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++...    ...+.+..|..+++.+ +||||+++++++++.+..|+||||+
T Consensus        24 ~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~  103 (353)
T 2i0e_A           24 FLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYV  103 (353)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCC
Confidence            889999999999999986 468899999997532    2355677889999887 7999999999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      ++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  ...
T Consensus       104 ~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~  180 (353)
T 2i0e_A          104 NGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKT  180 (353)
T ss_dssp             CSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCC
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCccccc
Confidence            99999999975  568888999999999999999999   99999999999999999999999999987532211  122


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||+.||......      .....+.... ...+.   ....++.+
T Consensus       181 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~------~~~~~i~~~~-~~~p~---~~s~~~~~  250 (353)
T 2i0e_A          181 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED------ELFQSIMEHN-VAYPK---SMSKEAVA  250 (353)
T ss_dssp             CCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHCC-CCCCT---TSCHHHHH
T ss_pred             ccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHH------HHHHHHHhCC-CCCCC---CCCHHHHH
Confidence            33566788899988888899999999999999999999998753311      1111111111 11111   12346778


Q ss_pred             HHHHcccCCCCCCCC-----HHHHHHH
Q 002875          842 VALLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      ++.+||+.||++||+     ++|++++
T Consensus       251 li~~lL~~dP~~R~~~~~~~~~~i~~h  277 (353)
T 2i0e_A          251 ICKGLMTKHPGKRLGCGPEGERDIKEH  277 (353)
T ss_dssp             HHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred             HHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            999999999999995     5777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-35  Score=332.94  Aligned_cols=232  Identities=19%  Similarity=0.202  Sum_probs=174.8

Q ss_pred             ccCCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCcc
Q 002875            6 GALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAE   85 (872)
Q Consensus         6 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~   85 (872)
                      +..+....+  ++.|++|++++|.++++ | +|..+++|++|+|++|.+++. |  +..+++|++|++++|.+++. |  
T Consensus        32 ~~~~~~~~~--l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--  101 (457)
T 3bz5_A           32 ATDTISEEQ--LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--  101 (457)
T ss_dssp             TTSEEEHHH--HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred             cccccChhH--cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence            344445556  78888888888888865 4 688888888888888888864 3  78888888888888888764 3  


Q ss_pred             ccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCc
Q 002875           86 ISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ  165 (872)
Q Consensus        86 ~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~  165 (872)
                      ++++++|++|++++|.+.+. |  ++.+++|++|++++|.+++.   .++.+++|++|++++|...+.+  .+..+++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            78888888888888888763 3  78888888888888888764   3778888888888888655555  366778888


Q ss_pred             EEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEccccc
Q 002875          166 YLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNE  245 (872)
Q Consensus       166 ~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~  245 (872)
                      .|++++|.+++ +|  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  +..+++|+.|++++|+
T Consensus       174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred             EEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence            88888888876 34  67778888888888888765   37777888888888888876 44  7777888888888888


Q ss_pred             CCCCCCccccCCCCcceeeccc
Q 002875          246 MSGTVPESLVQLPSLEILFIWN  267 (872)
Q Consensus       246 l~~~~p~~l~~l~~L~~L~l~~  267 (872)
                      +++..+   ..+++|+.|+++.
T Consensus       245 l~~~~~---~~l~~L~~L~l~~  263 (457)
T 3bz5_A          245 LTELDV---STLSKLTTLHCIQ  263 (457)
T ss_dssp             CSCCCC---TTCTTCCEEECTT
T ss_pred             CCCcCH---HHCCCCCEEeccC
Confidence            876543   3444555554443

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2.1e-37  Score=326.70  Aligned_cols=249  Identities=16%  Similarity=0.158  Sum_probs=195.4

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc-chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG-ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~-~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      ++.+.|.  ..+.||+|+||.||+|.. .+++.||+|++... ....+.+.+|++++++++||||++++++|.+.+..++
T Consensus         6 ~~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (277)
T 3f3z_A            6 DINQYYT--LENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYL   83 (277)
T ss_dssp             CHHHHEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhhEE--eeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEE
Confidence            3455666  889999999999999986 56789999999754 2346778899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee---CCCCCeeEcccccccccc
Q 002875          681 LYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill---~~~~~~ki~dfg~~~~~~  755 (872)
                      ||||+++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||++....
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~  160 (277)
T 3f3z_A           84 VMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK  160 (277)
T ss_dssp             EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence            9999999999998864  458889999999999999999999   99999999999999   788999999999987544


Q ss_pred             ccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          756 LADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       756 ~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      .... ....++..|.+||...+. ++.++||||+||++|||+||+.||.......      ....+..............
T Consensus       161 ~~~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~  233 (277)
T 3f3z_A          161 PGKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSE------VMLKIREGTFTFPEKDWLN  233 (277)
T ss_dssp             TTSCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCHHHHTT
T ss_pred             CccchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhCCCCCCchhhhc
Confidence            3222 122355567888877654 7889999999999999999999987533211      0111111110000000112


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.+++.+||+.||++|||+.|++++
T Consensus       234 ~~~~~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          234 VSPQAESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            34567899999999999999999999853

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3.8e-37  Score=335.54  Aligned_cols=260  Identities=18%  Similarity=0.200  Sum_probs=196.0

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhc--cCCCCceeEEEEEecCC---
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGT--VRHKNLIRLLGFCYNRH---  676 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~--l~H~niv~l~~~~~~~~---  676 (872)
                      ..+.+.|.  ..+.||+|+||.||+|+. +|+.||||++...  ..+.+.+|++++..  ++||||+++++++...+   
T Consensus        38 ~~~~~~y~--~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~--~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~  112 (342)
T 1b6c_B           38 RTIARTIV--LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW  112 (342)
T ss_dssp             HHHHHHCE--EEEEEEEETTEEEEEEEE-TTEEEEEEEECGG--GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred             ccccccEE--EEeeecCCCCcEEEEEEE-cCccEEEEEeCch--hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence            33455676  889999999999999987 6999999999643  34556677888776  79999999999998775   


Q ss_pred             -eeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHh--------hCCCCCcccCCCCCCCeeeCCCCCeeEc
Q 002875          677 -QAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLH--------HDCYPAIPHGDLKASNIVFDENMEPHLA  746 (872)
Q Consensus       677 -~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH--------~~~~~~i~Hrdlk~~Nill~~~~~~ki~  746 (872)
                       ..++||||+++|+|.+++.+ ..++.+.+.++.|++.||+|||        +.   +|+||||||+||+++.++.+||+
T Consensus       113 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL~  189 (342)
T 1b6c_B          113 TQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIA  189 (342)
T ss_dssp             CCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEEC
T ss_pred             ceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEEE
Confidence             78999999999999999976 4688999999999999999999        66   99999999999999999999999


Q ss_pred             cccccccccccC------CCCcccccccCchhhhccc------CCcccccchhHHHHHHHHHcC----------CCCCCC
Q 002875          747 EFGFKYLTQLAD------GSFPAKIAWTESGEFYNAM------KEEMYMDVYGFGEIILEILTN----------GRLTNA  804 (872)
Q Consensus       747 dfg~~~~~~~~~------~~~~~~~~~~~~~e~~~~~------~~~~~~Dv~S~Gvil~el~tg----------~~p~~~  804 (872)
                      |||+++......      .....++..|.+||.....      .++.++|||||||++|||+||          ..||..
T Consensus       190 Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~  269 (342)
T 1b6c_B          190 DLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYD  269 (342)
T ss_dssp             CCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred             ECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccc
Confidence            999987544322      1122345567788877654      233679999999999999999          455543


Q ss_pred             CCCCCCccccccccccccccccC-CCC--chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          805 GSSLQNKPIDGLLGEMYNENEVG-SSS--SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      ...... ...............+ .+.  ...+....+.+++.+||+.||++|||++|++++|+.+...
T Consensus       270 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          270 LVPSDP-SVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             TSCSSC-CHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             cCcCcc-cHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            221110 0000000011110000 111  1134566788999999999999999999999999987543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=2.3e-37  Score=327.72  Aligned_cols=247  Identities=17%  Similarity=0.191  Sum_probs=194.2

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++....   ...+.+.+|+.++++++||||+++++++.+++..++|
T Consensus         6 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            6 DNYD--VKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhh--hhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence            3455  889999999999999985 568999999997543   2346678899999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC---eeEccccccccccc
Q 002875          682 YDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME---PHLAEFGFKYLTQL  756 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~---~ki~dfg~~~~~~~  756 (872)
                      |||+++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.   +||+|||++.....
T Consensus        84 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  160 (284)
T 3kk8_A           84 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  160 (284)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence            999999999988865  468889999999999999999999   9999999999999986655   99999999865443


Q ss_pred             cCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          757 ADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       757 ~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      ... ....+...|.+||...+..++.++||||+||++|||+||+.||........  ............    .+.....
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~----~~~~~~~  234 (284)
T 3kk8_A          161 SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRL--YAQIKAGAYDYP----SPEWDTV  234 (284)
T ss_dssp             SCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHTCCCCC----TTTTTTS
T ss_pred             CccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHH--HHHHHhccccCC----chhhccc
Confidence            222 122355668888988888889999999999999999999999875432110  000000011000    1111122


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...+.+++.+||+.||++|||++|++++
T Consensus       235 ~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          235 TPEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             CHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            3467789999999999999999999864

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.4e-37  Score=332.45  Aligned_cols=250  Identities=18%  Similarity=0.272  Sum_probs=192.1

Q ss_pred             hhhhccCCCCCceeeee-----cCCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAV-----LPTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-----~~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~  682 (872)
                      ..+.||+|+||.||+|.     ..+|+.||||++....  ...+.+.+|++++++++||||+++++++.+.  +..++||
T Consensus        25 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~  104 (302)
T 4e5w_A           25 RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIM  104 (302)
T ss_dssp             EEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEE
T ss_pred             hhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEE
Confidence            78999999999999998     4578999999997532  2356788999999999999999999999876  6689999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+++|+|.+++..   ..++.++..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus       105 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  181 (302)
T 4e5w_A          105 EFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKE  181 (302)
T ss_dssp             ECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCC
T ss_pred             EeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccccccCCCc
Confidence            99999999999943   468889999999999999999999   999999999999999999999999999876543221


Q ss_pred             -----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCC--------CCC-ccccccccccccccc
Q 002875          760 -----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSS--------LQN-KPIDGLLGEMYNENE  825 (872)
Q Consensus       760 -----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~--------~~~-~~~~~~~~~~~~~~~  825 (872)
                           ....++..|.+||...+..++.++||||+||++|||+||+.|+.....        ... ...............
T Consensus       182 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (302)
T 4e5w_A          182 YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKR  261 (302)
T ss_dssp             EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCC
T ss_pred             ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCC
Confidence                 112244457788888777888899999999999999999887542110        000 000000000101110


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ...+   ......+.+++.+||+.||++|||++|+++.|+.+
T Consensus       262 ~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  300 (302)
T 4e5w_A          262 LPCP---PNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL  300 (302)
T ss_dssp             CCCC---TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCC---CCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            1111   12234678999999999999999999999999865

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=5.1e-37  Score=350.22  Aligned_cols=250  Identities=16%  Similarity=0.172  Sum_probs=197.7

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCe
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ  677 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  677 (872)
                      ..+.+.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|++++++++|||||++++++.+.+.
T Consensus        18 g~~~~~y~--~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   95 (486)
T 3mwu_A           18 GTFAERYN--IVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSS   95 (486)
T ss_dssp             CHHHHHEE--EEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             CChhcceE--EeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCE
Confidence            34556677  889999999999999986 57999999999643   2345678899999999999999999999999999


Q ss_pred             eEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC---CCCCeeEccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD---ENMEPHLAEFGFKY  752 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~---~~~~~ki~dfg~~~  752 (872)
                      .|+|||||++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++   .++.+||+|||+++
T Consensus        96 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  172 (486)
T 3mwu_A           96 FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (486)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTT
T ss_pred             EEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCe
Confidence            9999999999999998854  568888999999999999999999   999999999999995   45679999999987


Q ss_pred             cccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCc
Q 002875          753 LTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSS  831 (872)
Q Consensus       753 ~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  831 (872)
                      ....... ....++.+|.+||+..+ .++.++||||+||++|||+||..||.+.....      ....+.........+.
T Consensus       173 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~  245 (486)
T 3mwu_A          173 CFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD------ILKRVETGKYAFDLPQ  245 (486)
T ss_dssp             TBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHTCCCSCSGG
T ss_pred             ECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCCCCCCcc
Confidence            5543222 22336677888898765 48889999999999999999999987543211      1111111110111122


Q ss_pred             hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          832 LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       832 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +......+.+++.+||+.||++|||++|++++
T Consensus       246 ~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          246 WRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             GGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            23334567899999999999999999999975

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=3.1e-37  Score=338.10  Aligned_cols=249  Identities=20%  Similarity=0.252  Sum_probs=193.9

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---------hHHHHHHHHHHhhcc-CCCCceeEEEEE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---------RIKIVSEFITRIGTV-RHKNLIRLLGFC  672 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---------~~~~~~~e~~~l~~l-~H~niv~l~~~~  672 (872)
                      ..+.|.  ..+.||+|+||.||+|.. .+|+.||||++.....         ..+.+.+|+.+++++ +||||+++++++
T Consensus        92 ~~~~y~--~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           92 FYQKYD--PKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhcc--cceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            334455  778999999999999997 4799999999875431         145678899999999 799999999999


Q ss_pred             ecCCeeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          673 YNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       673 ~~~~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                      ...+..|+||||+++|+|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~DfG~  246 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFGF  246 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEecCc
Confidence            999999999999999999999874  568889999999999999999999   999999999999999999999999999


Q ss_pred             cccccccCC-CCcccccccCchhhhcc------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccc
Q 002875          751 KYLTQLADG-SFPAKIAWTESGEFYNA------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE  823 (872)
Q Consensus       751 ~~~~~~~~~-~~~~~~~~~~~~e~~~~------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  823 (872)
                      +........ ....++..|.+||+..+      ..++.++|||||||++|||+||+.||.......      ....+...
T Consensus       247 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~------~~~~i~~~  320 (365)
T 2y7j_A          247 SCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQIL------MLRMIMEG  320 (365)
T ss_dssp             CEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHT
T ss_pred             ccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhC
Confidence            875543222 12235566788887653      257788999999999999999999987532111      00111111


Q ss_pred             cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......+........+.+++.+||+.||++|||++|++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  360 (365)
T 2y7j_A          321 QYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH  360 (365)
T ss_dssp             CCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            0000001111223467889999999999999999999875

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=3e-37  Score=351.08  Aligned_cols=243  Identities=14%  Similarity=0.116  Sum_probs=194.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|+.++++++|||||++++++.+.+..|+|||||+
T Consensus       188 ~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~  267 (576)
T 2acx_A          188 QYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMN  267 (576)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             EEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCC
Confidence            788999999999999986 589999999997532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CC
Q 002875          687 NGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SF  761 (872)
Q Consensus       687 ~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~  761 (872)
                      +|+|.+++...    .++.+...++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++....... ..
T Consensus       268 gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~  344 (576)
T 2acx_A          268 GGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKG  344 (576)
T ss_dssp             SCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEEC
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceecccCccccc
Confidence            99999999752    57888999999999999999999   999999999999999999999999999976543222 12


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||..||.........  .. +.......+...+   .....++.+
T Consensus       345 ~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~--~~-i~~~i~~~~~~~p---~~~s~~~~d  418 (576)
T 2acx_A          345 RVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKR--EE-VERLVKEVPEEYS---ERFSPQARS  418 (576)
T ss_dssp             CCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCH--HH-HHHHHHHCCCCCC---TTSCHHHHH
T ss_pred             cCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhH--HH-HHHHhhcccccCC---ccCCHHHHH
Confidence            24567788899988878899999999999999999999999754321110  00 0011111101111   122346788


Q ss_pred             HHHHcccCCCCCCC-----CHHHHHHH
Q 002875          842 VALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      ++.+||+.||++||     +++|++++
T Consensus       419 LI~~lL~~dP~~R~g~~~~sa~eil~H  445 (576)
T 2acx_A          419 LCSQLLCKDPAERLGCRGGSAREVKEH  445 (576)
T ss_dssp             HHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred             HHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence            99999999999999     78998765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.5e-36  Score=335.52  Aligned_cols=366  Identities=16%  Similarity=0.172  Sum_probs=226.9

Q ss_pred             CCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCC
Q 002875           28 NSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIP  107 (872)
Q Consensus        28 n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p  107 (872)
                      +......+..+.++++|++|++++|.+.+. | +|..+++|++|++++|.+++. |  ++.+++|++|+|++|.+.+. |
T Consensus        28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~  101 (457)
T 3bz5_A           28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D  101 (457)
T ss_dssp             TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred             cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence            344455566788899999999999999864 5 688999999999999998864 3  88899999999999998864 3


Q ss_pred             cccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCC
Q 002875          108 SQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTK  187 (872)
Q Consensus       108 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  187 (872)
                        |+++++|++|++++|.+++. |  ++.+++|++|++++|.+.+. +  ++++++|++|++++|...+.+  .+..+++
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCc
Confidence              88899999999999988763 3  66677777777777666552 2  555666666666666443333  2455555


Q ss_pred             CCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeeccc
Q 002875          188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWN  267 (872)
Q Consensus       188 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  267 (872)
                      |++|++++|++++. |  +..+++|+.|++++|++++.   .++.+++|+.|++++|++++ +|  +..+++|+.|++++
T Consensus       172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            66666666655542 2  45555555555555555543   24455555555555555554 22  44445555555555


Q ss_pred             ccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccC
Q 002875          268 NYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIP  347 (872)
Q Consensus       268 n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  347 (872)
                      |.+++..   +..+++|+.|+++.|                                      +|+.|++++|.+.+.+|
T Consensus       243 N~l~~~~---~~~l~~L~~L~l~~n--------------------------------------~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          243 NPLTELD---VSTLSKLTTLHCIQT--------------------------------------DLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTC--------------------------------------CCSCCCCTTCTTCCEEE
T ss_pred             CcCCCcC---HHHCCCCCEEeccCC--------------------------------------CCCEEECCCCccCCccc
Confidence            5444321   122333333333322                                      23334444444443333


Q ss_pred             ccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCCCCCCCcCCc
Q 002875          348 LKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKS  427 (872)
Q Consensus       348 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~  427 (872)
                        +..+++|+.|++++|...+.+|.   ...+|+.|++++|                                     ++
T Consensus       282 --~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------------------------------~~  319 (457)
T 3bz5_A          282 --AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------------------------------PK  319 (457)
T ss_dssp             --CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------------------------------TT
T ss_pred             --ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------------------------------cc
Confidence              23344444444444444333332   1123333333332                                     34


Q ss_pred             cceeeccccccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcC
Q 002875          428 ISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSF  507 (872)
Q Consensus       428 l~~l~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  507 (872)
                      |+.++++.|.+++. +  +.++++|+.|++++|++++        ++.|..|++++|.+.|.     ..+..|+.+++++
T Consensus       320 L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~  383 (457)
T 3bz5_A          320 LVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTN  383 (457)
T ss_dssp             CCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBT
T ss_pred             CCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcccccc
Confidence            55666666666663 2  7778888888888888875        35667778888888876     2345678889999


Q ss_pred             CeeeecCCCC
Q 002875          508 NDISGSIPSG  517 (872)
Q Consensus       508 N~l~~~~p~~  517 (872)
                      |+++|.+|..
T Consensus       384 N~l~g~ip~~  393 (457)
T 3bz5_A          384 NSLTIAVSPD  393 (457)
T ss_dssp             TBEEEECCTT
T ss_pred             CcEEEEcChh
Confidence            9999988864

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.3e-37  Score=329.56  Aligned_cols=245  Identities=18%  Similarity=0.230  Sum_probs=195.2

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEec--------
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN--------  674 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--------  674 (872)
                      +...|.  ..+.||+|+||.||+|... +|+.||||++....   +.+.+|++++++++||||+++++++..        
T Consensus         9 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   83 (284)
T 2a19_B            9 FGMDFK--EIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETS   83 (284)
T ss_dssp             HHHHEE--EEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC----
T ss_pred             hccccc--eeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccc
Confidence            445566  8899999999999999974 89999999997543   356789999999999999999999864        


Q ss_pred             --------CCeeEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          675 --------RHQAYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       675 --------~~~~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                              ....++||||+++|+|.+++..    ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.
T Consensus        84 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~  160 (284)
T 2a19_B           84 SKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQ  160 (284)
T ss_dssp             -----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTE
T ss_pred             cccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCC
Confidence                    3458999999999999999963    468889999999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccc
Q 002875          743 PHLAEFGFKYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMY  821 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~  821 (872)
                      +||+|||+++....... ....+...|.+||......++.++|||||||++|||+||..|+.....        ......
T Consensus       161 ~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~--------~~~~~~  232 (284)
T 2a19_B          161 VKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK--------FFTDLR  232 (284)
T ss_dssp             EEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH--------HHHHHH
T ss_pred             EEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH--------HHHHhh
Confidence            99999999876543222 222355567888988888889999999999999999999887642110        000111


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          822 NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      ... .  ...   ....+.+++.+||+.||++|||++|++++|..++..
T Consensus       233 ~~~-~--~~~---~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~  275 (284)
T 2a19_B          233 DGI-I--SDI---FDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS  275 (284)
T ss_dssp             TTC-C--CTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred             ccc-c--ccc---CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence            110 1  111   123467889999999999999999999999877543

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=6e-37  Score=339.93  Aligned_cols=255  Identities=13%  Similarity=0.117  Sum_probs=196.1

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCC--eeEEEEcc
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH--QAYLLYDY  684 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lv~ey  684 (872)
                      |...+.||+|+||.||+|.. .+|+.||||++....  ...+.+.+|++++++++|||||++++++.+.+  ..++||||
T Consensus        11 y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~   90 (396)
T 4eut_A           11 WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEF   90 (396)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECC
T ss_pred             eEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEec
Confidence            33888999999999999986 469999999997533  23567788999999999999999999998755  78999999


Q ss_pred             cCCCChHHHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee----CCCCCeeEcccccccccc
Q 002875          685 LPNGNLSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF----DENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       685 ~~~g~L~~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill----~~~~~~ki~dfg~~~~~~  755 (872)
                      |++|+|.+++...     .++.+.+.++.|++.||+|||+.   +|+||||||+||++    +.++.+||+|||+++...
T Consensus        91 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~  167 (396)
T 4eut_A           91 CPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (396)
T ss_dssp             CTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECC
T ss_pred             CCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCceEcc
Confidence            9999999999762     68889999999999999999999   99999999999999    777889999999997654


Q ss_pred             ccCC-CCcccccccCchhhhcc--------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc--ccccccc-----
Q 002875          756 LADG-SFPAKIAWTESGEFYNA--------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP--IDGLLGE-----  819 (872)
Q Consensus       756 ~~~~-~~~~~~~~~~~~e~~~~--------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~--~~~~~~~-----  819 (872)
                      .... ....++..|.+||.+..        ..++.++|||||||++|||+||+.||..........  .......     
T Consensus       168 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~  247 (396)
T 4eut_A          168 DDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGA  247 (396)
T ss_dssp             CGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTC
T ss_pred             CCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCccc
Confidence            3222 12234556778887654        456788999999999999999999986432211100  0000000     


Q ss_pred             -----------c-ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          820 -----------M-YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       820 -----------~-~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                                 . +.................+.+++.+||+.||++|||++|+++.+..+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~i  307 (396)
T 4eut_A          248 ISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (396)
T ss_dssp             CEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             chhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHH
Confidence                       0 00000111112245566788999999999999999999999988765

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=2.1e-37  Score=345.66  Aligned_cols=251  Identities=15%  Similarity=0.128  Sum_probs=187.7

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---------hHHHHHHHHHHhhccCCCCceeEEEE
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---------RIKIVSEFITRIGTVRHKNLIRLLGF  671 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---------~~~~~~~e~~~l~~l~H~niv~l~~~  671 (872)
                      ..+.+.|.  ..+.||+|+||.||+|.. .+|+.||||++.....         ....+.+|++++++++|||||+++++
T Consensus       131 ~~~~~~y~--~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~  208 (419)
T 3i6u_A          131 KALRDEYI--MSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNF  208 (419)
T ss_dssp             HHHHTTEE--EEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEE
T ss_pred             hhhhccEE--EEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            44555666  889999999999999985 6789999999975321         12347889999999999999999999


Q ss_pred             EecCCeeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC---CCeeEc
Q 002875          672 CYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN---MEPHLA  746 (872)
Q Consensus       672 ~~~~~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~---~~~ki~  746 (872)
                      +.. +..|+|||||++|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.+   ..+||+
T Consensus       209 ~~~-~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~  284 (419)
T 3i6u_A          209 FDA-EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT  284 (419)
T ss_dssp             EES-SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred             Eec-CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEe
Confidence            865 457999999999999999865  457889999999999999999999   99999999999999754   459999


Q ss_pred             cccccccccccCC-CCcccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccc
Q 002875          747 EFGFKYLTQLADG-SFPAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN  822 (872)
Q Consensus       747 dfg~~~~~~~~~~-~~~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  822 (872)
                      |||+++....... ....++..|++||+..   ...++.++||||+||++|||+||..||.........  .   ..+..
T Consensus       285 DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~--~---~~i~~  359 (419)
T 3i6u_A          285 DFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSL--K---DQITS  359 (419)
T ss_dssp             CSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCH--H---HHHHT
T ss_pred             ecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHH--H---HHHhc
Confidence            9999976543221 1223556678888764   356788999999999999999999998754322110  0   01111


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......++........+.+++.+||+.||++|||++|++++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          360 GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            10000011112234568899999999999999999999875

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=343.25  Aligned_cols=242  Identities=14%  Similarity=0.067  Sum_probs=190.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++...    ...+.+.+|+.++.+++|||||++++++++.+..|+|||||+
T Consensus        65 ~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~  144 (412)
T 2vd5_A           65 ILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYV  144 (412)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCC
Confidence            888999999999999986 579999999997532    223457889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---C
Q 002875          687 NGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---S  760 (872)
Q Consensus       687 ~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---~  760 (872)
                      +|+|.+++.+   ..++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.......   .
T Consensus       145 gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~  221 (412)
T 2vd5_A          145 GGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSL  221 (412)
T ss_dssp             SCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECS
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechhheeccCCCccccc
Confidence            9999999965   468888899999999999999999   999999999999999999999999999976543221   1


Q ss_pred             CcccccccCchhhhc-------ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc-ccCCCCch
Q 002875          761 FPAKIAWTESGEFYN-------AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSL  832 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~-------~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  832 (872)
                      ...++..|.+||+..       ...++.++||||+||++|||+||+.||.......      ....+.... ....+...
T Consensus       222 ~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~------~~~~i~~~~~~~~~p~~~  295 (412)
T 2vd5_A          222 VAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE------TYGKIVHYKEHLSLPLVD  295 (412)
T ss_dssp             SCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHTHHHHCCCC---
T ss_pred             eeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH------HHHHHHhcccCcCCCccc
Confidence            234566788888876       3457889999999999999999999997543211      111111100 00001111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCC---CCHHHHHHH
Q 002875          833 QDEIKLVLDVALLCTRSTPSDR---PSMEEALKL  863 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~R---pt~~~v~~~  863 (872)
                      .....++.+++.+||. +|++|   |+++|++++
T Consensus       296 ~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H  328 (412)
T 2vd5_A          296 EGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH  328 (412)
T ss_dssp             -CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred             cCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence            1233567889999999 99988   699999865

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.9e-37  Score=328.98  Aligned_cols=248  Identities=19%  Similarity=0.232  Sum_probs=185.4

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|+..  ..||||+++...   ...+.+.+|++++++++||||+++++++ ..+..++||||+++|
T Consensus        28 ~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~  104 (289)
T 3og7_A           28 VGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGS  104 (289)
T ss_dssp             EEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEECCCEE
T ss_pred             eeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEecCCC
Confidence            8899999999999999864  359999997532   3356788999999999999999999976 455689999999999


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----CC
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----SF  761 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----~~  761 (872)
                      +|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......    ..
T Consensus       105 ~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  181 (289)
T 3og7_A          105 SLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQ  181 (289)
T ss_dssp             EHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC----------------
T ss_pred             cHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccccccccccc
Confidence            99999964   357888999999999999999999   999999999999999999999999999865432111    11


Q ss_pred             cccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          762 PAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       762 ~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      ..++..|.+||...   ...++.++||||+||++|||+||+.||......... ..........+..   ..........
T Consensus       182 ~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~  257 (289)
T 3og7_A          182 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQI-IEMVGRGSLSPDL---SKVRSNCPKR  257 (289)
T ss_dssp             --CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHH-HHHHHHTSCCCCT---TSSCTTSCHH
T ss_pred             cCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHH-HHHhcccccCcch---hhccccCCHH
Confidence            22455677888775   556788999999999999999999998754321110 0000000111110   1111123356


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      +.+++.+||+.||++|||++|+++.|+++..
T Consensus       258 l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          258 MKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence            7899999999999999999999999998865

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=3.2e-37  Score=326.47  Aligned_cols=247  Identities=18%  Similarity=0.176  Sum_probs=193.6

Q ss_pred             hhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccch-------hHHHHHHHHHHhhccCCCCceeEEEEEecCCe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGAT-------RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~-------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  677 (872)
                      +.|.  ..+.||+|+||.||+|... +|+.||||.+.....       ..+.+.+|+.++++++||||+++++++.+.+.
T Consensus         5 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   82 (283)
T 3bhy_A            5 DHYE--MGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTD   82 (283)
T ss_dssp             HHEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhhh--hHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCe
Confidence            4455  8899999999999999864 799999999875321       25678999999999999999999999999999


Q ss_pred             eEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC----CeeEcccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM----EPHLAEFGFK  751 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~----~~ki~dfg~~  751 (872)
                      .++||||+++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++    .+||+|||++
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~  159 (283)
T 3bhy_A           83 VVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA  159 (283)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTTC
T ss_pred             EEEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecccc
Confidence            9999999999999999964  468899999999999999999999   999999999999998877    7999999998


Q ss_pred             ccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          752 YLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       752 ~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      ........ ....+...|.+||......++.++||||+||++|||+||+.||.......      ....+..........
T Consensus       160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~  233 (283)
T 3bhy_A          160 HKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE------TLTNISAVNYDFDEE  233 (283)
T ss_dssp             EECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHTTCCCCCHH
T ss_pred             eeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH------HHHHhHhcccCCcch
Confidence            75433221 11224556788898887888999999999999999999999987533111      000110000000000


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........+.+++.+||+.||++|||++|++++
T Consensus       234 ~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  266 (283)
T 3bhy_A          234 YFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEH  266 (283)
T ss_dssp             HHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred             hcccCCHHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence            011223467889999999999999999999874

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.6e-37  Score=350.19  Aligned_cols=239  Identities=13%  Similarity=0.056  Sum_probs=185.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    .....+.+|+.++++++|||||+++++|.+.+..|+|||||+
T Consensus       152 ~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~  231 (446)
T 4ejn_A          152 YLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYAN  231 (446)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCCS
T ss_pred             EeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCC
Confidence            889999999999999985 679999999997532    234566788999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+ .   +|+||||||+|||++.++.+||+|||+++......  ...
T Consensus       232 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~  308 (446)
T 4ejn_A          232 GGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKT  308 (446)
T ss_dssp             SCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CC
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceeccCCCccccc
Confidence            9999999865  45788899999999999999998 7   99999999999999999999999999987532221  122


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|.+||+..+..++.++||||+||++|||+||+.||.......      ....+.... ...+.   ....++.+
T Consensus       309 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~~~~~~~  378 (446)
T 4ejn_A          309 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK------LFELILMEE-IRFPR---TLGPEAKS  378 (446)
T ss_dssp             SSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TSCHHHHH
T ss_pred             ccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH------HHHHHHhCC-CCCCc---cCCHHHHH
Confidence            335667889999888889999999999999999999999997543211      111111111 11111   12245778


Q ss_pred             HHHHcccCCCCCCC-----CHHHHHHH
Q 002875          842 VALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      ++.+||+.||++||     +++|++++
T Consensus       379 li~~~L~~dP~~R~~~~~~t~~ell~h  405 (446)
T 4ejn_A          379 LLSGLLKKDPKQRLGGGSEDAKEIMQH  405 (446)
T ss_dssp             HHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             HHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence            99999999999999     99999864

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=2.4e-37  Score=332.94  Aligned_cols=252  Identities=19%  Similarity=0.237  Sum_probs=194.5

Q ss_pred             hhhhccCCCCCceeeeec-----CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecC--CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-----PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-----~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~--~~~~lv~  682 (872)
                      ..+.||+|+||.||++..     .+|+.||||++....  ...+.+.+|++++++++|||||++++++.+.  ...++||
T Consensus        35 ~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~  114 (318)
T 3lxp_A           35 KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVM  114 (318)
T ss_dssp             EEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEE
T ss_pred             hhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEE
Confidence            788999999999987753     478999999997543  3356788999999999999999999999874  6789999


Q ss_pred             cccCCCChHHHhhCC-CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--
Q 002875          683 DYLPNGNLSEKIRTK-RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~~-~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--  759 (872)
                      ||+++|+|.+++... .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  
T Consensus       115 e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~  191 (318)
T 3lxp_A          115 EYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY  191 (318)
T ss_dssp             CCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEE
T ss_pred             ecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccccccccccccc
Confidence            999999999999764 68899999999999999999999   999999999999999999999999999876543221  


Q ss_pred             ---CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC----Ccc----ccccccccccccccCC
Q 002875          760 ---SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ----NKP----IDGLLGEMYNENEVGS  828 (872)
Q Consensus       760 ---~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~----~~~----~~~~~~~~~~~~~~~~  828 (872)
                         ....++.+|.+||......++.++||||+||++|||+||+.||.......    .+.    ......+.......  
T Consensus       192 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  269 (318)
T 3lxp_A          192 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGER--  269 (318)
T ss_dssp             EC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC--
T ss_pred             ccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccC--
Confidence               11223445778888887788899999999999999999999876321100    000    00000011111100  


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .+........+.+++.+||+.||++|||++|+++.|+.+.
T Consensus       270 ~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~  309 (318)
T 3lxp_A          270 LPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVH  309 (318)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence            0111122356788999999999999999999999998763

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.3e-37  Score=333.82  Aligned_cols=240  Identities=16%  Similarity=0.149  Sum_probs=186.0

Q ss_pred             chhhhccCCCCCceeeeecCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCC--CCceeEEEEEecCCeeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRH--KNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H--~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ...+.||+|+||.||+|...+|+.||||++....   ...+.+.+|+.++++++|  ||||++++++.+++..|+||| +
T Consensus        12 ~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~   90 (343)
T 3dbq_A           12 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-C   90 (343)
T ss_dssp             EEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC-C
T ss_pred             EEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEe-C
Confidence            3889999999999999999999999999997532   234678899999999987  999999999999999999999 5


Q ss_pred             CCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----
Q 002875          686 PNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----  759 (872)
Q Consensus       686 ~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----  759 (872)
                      .+|+|.+++...  .++.++..++.|+++||+|||+.   +|+||||||+||+++ ++.+||+|||+++.......    
T Consensus        91 ~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~  166 (343)
T 3dbq_A           91 GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVK  166 (343)
T ss_dssp             CSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC---------
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCcccccccC
Confidence            678999999763  57888999999999999999999   999999999999997 57899999999976543221    


Q ss_pred             CCcccccccCchhhhcc-----------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc-C
Q 002875          760 SFPAKIAWTESGEFYNA-----------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV-G  827 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~-----------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~  827 (872)
                      ....++.+|.+||+...           ..++.++|||||||++|||+||+.||.......     .......++... .
T Consensus       167 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-----~~~~~~~~~~~~~~  241 (343)
T 3dbq_A          167 DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-----SKLHAIIDPNHEIE  241 (343)
T ss_dssp             ---CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-----HHHHHHHCTTSCCC
T ss_pred             CCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHH-----HHHHHHhcCCcccC
Confidence            12235667888888754           567888999999999999999999986432110     001111111100 0


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+...   ...+.+++.+||+.||++|||++|++++
T Consensus       242 ~~~~~---~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          242 FPDIP---EKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             CCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CcccC---CHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence            11111   2357789999999999999999999875

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=3.2e-37  Score=329.97  Aligned_cols=249  Identities=18%  Similarity=0.186  Sum_probs=194.9

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||.++.... ..+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus         7 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (304)
T 2jam_A            7 IRKTFI--FMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV   84 (304)
T ss_dssp             HHHHEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhccce--eeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence            445566  889999999999999986 4799999999975432 345688999999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee---CCCCCeeEccccccccccc
Q 002875          682 YDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill---~~~~~~ki~dfg~~~~~~~  756 (872)
                      |||+++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+++....
T Consensus        85 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  161 (304)
T 2jam_A           85 MQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN  161 (304)
T ss_dssp             ECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC
T ss_pred             EEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecCC
Confidence            999999999999864  457888999999999999999999   99999999999999   7888999999999875433


Q ss_pred             cCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          757 ADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       757 ~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      .......++..|.+||...+..++.++||||+||++|||+||..||.......      ....+.........+......
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~~  235 (304)
T 2jam_A          162 GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK------LFEKIKEGYYEFESPFWDDIS  235 (304)
T ss_dssp             BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHHCCCCCCTTTTTTSC
T ss_pred             CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHcCCCCCCccccccCC
Confidence            22222224566788898888888999999999999999999999987533111      001111110000011112233


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          236 ESAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             HHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            567889999999999999999999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=6.2e-37  Score=339.63  Aligned_cols=250  Identities=17%  Similarity=0.156  Sum_probs=191.2

Q ss_pred             chhhhccCC--CCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          611 TECEEAARP--QSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       611 ~~~~~~g~g--~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ...+.||+|  +||.||+|.. .+|+.||||++....   ...+.+.+|+.++++++|||||++++++.+++..|+||||
T Consensus        28 ~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  107 (389)
T 3gni_B           28 ELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF  107 (389)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             EEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEc
Confidence            388999999  9999999996 479999999997543   2356778899999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--
Q 002875          685 LPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       685 ~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--  758 (872)
                      |++|+|.+++..    ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||.+.......  
T Consensus       108 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~  184 (389)
T 3gni_B          108 MAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQR  184 (389)
T ss_dssp             CTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEE
T ss_pred             cCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeecccccc
Confidence            999999999864    357888999999999999999999   99999999999999999999999999875432111  


Q ss_pred             -------CCCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc--cccccccccccc--
Q 002875          759 -------GSFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI--DGLLGEMYNENE--  825 (872)
Q Consensus       759 -------~~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~--~~~~~~~~~~~~--  825 (872)
                             .....++..|.+||....  ..++.++||||+||++|||+||+.||.+.........  ........+...  
T Consensus       185 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (389)
T 3gni_B          185 QRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIP  264 (389)
T ss_dssp             CSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC---------------
T ss_pred             ccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccccccccc
Confidence                   111234455778888765  5788999999999999999999999975432211000  000000000000  


Q ss_pred             --------------------------------cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          826 --------------------------------VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       826 --------------------------------~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                                      ....+........+.+++.+||+.||++|||++|++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          265 AEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             -----------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             cccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence                                            00000111233568899999999999999999999876

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=6.3e-37  Score=338.39  Aligned_cols=241  Identities=16%  Similarity=0.139  Sum_probs=187.0

Q ss_pred             cchhhhccCCCCCceeeeecCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccC--CCCceeEEEEEecCCeeEEEEcc
Q 002875          610 STECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVR--HKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      |...+.||+|+||.||+|...+|+.||||++....   ...+.+.+|++++++++  |||||++++++..++..|+||| 
T Consensus        58 y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-  136 (390)
T 2zmd_A           58 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-  136 (390)
T ss_dssp             EEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-
T ss_pred             eEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-
Confidence            34889999999999999998889999999997532   33567889999999996  5999999999999999999999 


Q ss_pred             cCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          685 LPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       685 ~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      +.+|+|.+++..  ..++.++..++.||+.||+|||+.   +|+||||||+|||++ ++.+||+|||+++.......   
T Consensus       137 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~  212 (390)
T 2zmd_A          137 CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVV  212 (390)
T ss_dssp             CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC--------
T ss_pred             cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCCCcccc
Confidence            568899999975  357788899999999999999999   999999999999996 57899999999976543221   


Q ss_pred             -CCcccccccCchhhhcc-----------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc-
Q 002875          760 -SFPAKIAWTESGEFYNA-----------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV-  826 (872)
Q Consensus       760 -~~~~~~~~~~~~e~~~~-----------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-  826 (872)
                       ....++.+|.+||+...           ..++.++|||||||++|||+||+.||.......     ..+..+.++... 
T Consensus       213 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~-----~~~~~~~~~~~~~  287 (390)
T 2zmd_A          213 KDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-----SKLHAIIDPNHEI  287 (390)
T ss_dssp             -CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-----HHHHHHHCTTSCC
T ss_pred             CCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHH-----HHHHHHhCccccC
Confidence             12235667888888754           357889999999999999999999987432110     011111111101 


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+...   ..++.+++.+||+.||++|||++|++++
T Consensus       288 ~~~~~~---~~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          288 EFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             CCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCccc---hHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence            001111   2457789999999999999999999865

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=2e-37  Score=336.86  Aligned_cols=242  Identities=20%  Similarity=0.251  Sum_probs=190.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|++++++++|||||+++++|.+++..++
T Consensus        54 ~~y~--~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  131 (348)
T 1u5q_A           54 KLFS--DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL  131 (348)
T ss_dssp             HHEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             hhee--eeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEE
Confidence            3455  778999999999999985 789999999997532    224568899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhh---CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          681 LYDYLPNGNLSEKIR---TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       681 v~ey~~~g~L~~~l~---~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      ||||++ |++.+++.   ...++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       132 v~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~  207 (348)
T 1u5q_A          132 VMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  207 (348)
T ss_dssp             EEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB
T ss_pred             EEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCCC
Confidence            999997 68888874   3468899999999999999999999   9999999999999999999999999998765332


Q ss_pred             CCCCcccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc-ccCCCCchH
Q 002875          758 DGSFPAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN-EVGSSSSLQ  833 (872)
Q Consensus       758 ~~~~~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  833 (872)
                      .  ...++.+|.+||...   ...++.++|||||||++|||+||+.||........      ...+.... +.....   
T Consensus       208 ~--~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~------~~~~~~~~~~~~~~~---  276 (348)
T 1u5q_A          208 N--SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQNESPALQSG---  276 (348)
T ss_dssp             C--CCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHSCCCCCCCT---
T ss_pred             C--cccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH------HHHHHhcCCCCCCCC---
Confidence            1  223556678888764   45678899999999999999999999875432110      00111100 000011   


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .....+.+++.+||+.||++|||++|++++.
T Consensus       277 ~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~  307 (348)
T 1u5q_A          277 HWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR  307 (348)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHTTCH
T ss_pred             CCCHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence            1124567889999999999999999998654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=6.3e-37  Score=329.74  Aligned_cols=247  Identities=18%  Similarity=0.154  Sum_probs=186.4

Q ss_pred             hhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhc-cCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          613 CEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGT-VRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~-l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      .+.||+|+||.||+|.. .+|+.||||++.... ...+.+.+|++++.+ .+||||+++++++.+++..|+||||+++|+
T Consensus        18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   97 (316)
T 2ac3_A           18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGS   97 (316)
T ss_dssp             CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCB
T ss_pred             CceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCc
Confidence            36799999999999985 589999999997543 235678889999988 479999999999999999999999999999


Q ss_pred             hHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC---eeEccccccccccccC------
Q 002875          690 LSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME---PHLAEFGFKYLTQLAD------  758 (872)
Q Consensus       690 L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~---~ki~dfg~~~~~~~~~------  758 (872)
                      |.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.   +||+|||+++......      
T Consensus        98 L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  174 (316)
T 2ac3_A           98 ILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPIS  174 (316)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC------------
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCcccccc
Confidence            9999965  468888999999999999999999   9999999999999998765   9999999986543211      


Q ss_pred             ---CCCcccccccCchhhhcc-----cCCcccccchhHHHHHHHHHcCCCCCCCCCCCC-Cccccc--------cccccc
Q 002875          759 ---GSFPAKIAWTESGEFYNA-----MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ-NKPIDG--------LLGEMY  821 (872)
Q Consensus       759 ---~~~~~~~~~~~~~e~~~~-----~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~-~~~~~~--------~~~~~~  821 (872)
                         .....++..|.+||....     ..++.++||||+||++|||+||+.||....... .+....        ....+.
T Consensus       175 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~  254 (316)
T 2ac3_A          175 TPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQ  254 (316)
T ss_dssp             -------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred             ccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHh
Confidence               011224556778887754     457788999999999999999999997543221 111000        001111


Q ss_pred             cccccCCCC-chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 NENEVGSSS-SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 ~~~~~~~~~-~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ... ...+. ........+.+++.+||+.||++|||++|++++
T Consensus       255 ~~~-~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          255 EGK-YEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             HCC-CCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ccC-cccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            111 00010 011223568899999999999999999999985

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.8e-37  Score=337.88  Aligned_cols=193  Identities=16%  Similarity=0.171  Sum_probs=167.1

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-----CCCceeEEEEEecCCeeE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-----HKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-----H~niv~l~~~~~~~~~~~  679 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||+++......+.+..|+.++++++     |||||++++++...+..+
T Consensus        35 ~~y~--~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~  112 (360)
T 3llt_A           35 NAFL--VIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMC  112 (360)
T ss_dssp             TTEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEE
T ss_pred             CEEE--EEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeE
Confidence            3455  889999999999999986 67899999999865555667788899998886     999999999999999999


Q ss_pred             EEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC----------------
Q 002875          680 LLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE----------------  739 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~----------------  739 (872)
                      +||||+ +|+|.+++...    .++.+...++.|++.||+|||+.   +|+||||||+||+++.                
T Consensus       113 lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~  188 (360)
T 3llt_A          113 LIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLITVRRVTDG  188 (360)
T ss_dssp             EEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEEEECTTTC
T ss_pred             EEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccchhccccc
Confidence            999999 89999998752    57888999999999999999999   9999999999999985                


Q ss_pred             ---------CCCeeEccccccccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCC
Q 002875          740 ---------NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG  805 (872)
Q Consensus       740 ---------~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~  805 (872)
                               ++.+||+|||+++....... ...++..|.+||...+..++.++||||+||++|||+||+.||...
T Consensus       189 ~~~~~~~~~~~~~kl~DFG~a~~~~~~~~-~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  262 (360)
T 3llt_A          189 KKIQIYRTKSTGIKLIDFGCATFKSDYHG-SIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH  262 (360)
T ss_dssp             CEEEEEEESCCCEEECCCTTCEETTSCCC-SCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccCCCCEEEEeccCceecCCCCc-CccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence                     78899999999976443322 223456688899988888999999999999999999999998753

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=3.6e-38  Score=338.34  Aligned_cols=251  Identities=16%  Similarity=0.142  Sum_probs=188.5

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCC--
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRH--  676 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--  676 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||++.....    ..+.+.+|+.++++++|||||++++++...+  
T Consensus        10 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   87 (311)
T 3ork_A           10 LSDRYE--LGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPA   87 (311)
T ss_dssp             ETTTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETT
T ss_pred             ecCcEE--EEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCC
Confidence            334455  889999999999999995 7899999999975422    2456789999999999999999999987654  


Q ss_pred             --eeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          677 --QAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       677 --~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                        ..|+||||+++|+|.++++.  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        88 ~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~  164 (311)
T 3ork_A           88 GPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIAR  164 (311)
T ss_dssp             EEEEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC-
T ss_pred             CcccEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcc
Confidence              34999999999999999964  468889999999999999999999   99999999999999999999999999987


Q ss_pred             cccccCCC-----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          753 LTQLADGS-----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       753 ~~~~~~~~-----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      ........     ...++..|.+||...+..++.++||||+||++|||+||+.||.......      ............
T Consensus       165 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~------~~~~~~~~~~~~  238 (311)
T 3ork_A          165 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS------VAYQHVREDPIP  238 (311)
T ss_dssp             -----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHCCCCC
T ss_pred             cccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH------HHHHHhcCCCCC
Confidence            54332111     1224566888898888888999999999999999999999986533211      000111111000


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHH-HHHc
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL-KLLS  865 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~-~~L~  865 (872)
                      ..........++.+++.+||+.||++||++.+++ +.+.
T Consensus       239 ~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~  277 (311)
T 3ork_A          239 PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLV  277 (311)
T ss_dssp             HHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHH
Confidence            0000011235677899999999999999766655 4443

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=5.1e-37  Score=331.42  Aligned_cols=248  Identities=17%  Similarity=0.224  Sum_probs=194.7

Q ss_pred             hcCcchhhhccCCCCCceeeeecC------CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCee
Q 002875          607 SFNSTECEEAARPQSAAGCKAVLP------TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~~------~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  678 (872)
                      .|.  ..+.||+|+||.||+|+..      +++.||||.+....  .....+.+|++++++++||||+++++++.+.+..
T Consensus        26 ~y~--~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~  103 (322)
T 1p4o_A           26 KIT--MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT  103 (322)
T ss_dssp             GEE--EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred             hee--eeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCcc
Confidence            355  8899999999999999753      57899999997533  2345688999999999999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhC------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEc
Q 002875          679 YLLYDYLPNGNLSEKIRT------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA  746 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~  746 (872)
                      ++||||+++|+|.+++..            ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus       104 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~~kl~  180 (322)
T 1p4o_A          104 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIG  180 (322)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEEC
T ss_pred             EEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCeEEEC
Confidence            999999999999999864            237888999999999999999999   99999999999999999999999


Q ss_pred             cccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccc
Q 002875          747 EFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMY  821 (872)
Q Consensus       747 dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~  821 (872)
                      |||+++........    ...++..|.+||...+..++.++||||+||++|||+| |..||.......      ....+.
T Consensus       181 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~------~~~~~~  254 (322)
T 1p4o_A          181 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ------VLRFVM  254 (322)
T ss_dssp             CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH------HHHHHH
T ss_pred             cCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHH------HHHHHH
Confidence            99998754322211    1123445778898887788999999999999999999 666665322110      011111


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          822 NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .........   .....+.+++.+||+.||++|||++|++++|+.+.
T Consensus       255 ~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~  298 (322)
T 1p4o_A          255 EGGLLDKPD---NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM  298 (322)
T ss_dssp             TTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred             cCCcCCCCC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence            111011111   22345778999999999999999999999998764

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=5.5e-37  Score=323.64  Aligned_cols=243  Identities=19%  Similarity=0.235  Sum_probs=187.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecC-CeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-HQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-~~~~lv~ey~~~g~L  690 (872)
                      ..+.||+|+||.||+|.. +|+.||||.++... ..+.+.+|++++++++||||+++++++.+. +..++||||+++|+|
T Consensus        25 ~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L  102 (278)
T 1byg_A           25 LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL  102 (278)
T ss_dssp             EEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC---HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEH
T ss_pred             EEeEEecCCCceEEEEEE-cCCEEEEEEecchh-HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCH
Confidence            889999999999999987 58999999997543 456788999999999999999999997654 578999999999999


Q ss_pred             HHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccc
Q 002875          691 SEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA  766 (872)
Q Consensus       691 ~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~  766 (872)
                      .+++...    .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++........ ..+..
T Consensus       103 ~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~-~~~~~  178 (278)
T 1byg_A          103 VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT-GKLPV  178 (278)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-------------CCT
T ss_pred             HHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccccccccccC-CCccc
Confidence            9999753    57888899999999999999999   9999999999999999999999999998754332221 12334


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      .|.+||......++.++||||+||++|||+| |..||.......      ....+.........   ......+.+++.+
T Consensus       179 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~l~~li~~  249 (278)
T 1byg_A          179 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD------VVPRVEKGYKMDAP---DGCPPAVYEVMKN  249 (278)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG------HHHHHTTTCCCCCC---TTCCHHHHHHHHH
T ss_pred             cccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH------HHHHHhcCCCCCCc---ccCCHHHHHHHHH
Confidence            5778888887788999999999999999999 877776432111      01111111001111   1223467788999


Q ss_pred             cccCCCCCCCCHHHHHHHHcccCC
Q 002875          846 CTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ||+.||++|||++|+++.|+.++.
T Consensus       250 ~l~~~p~~Rps~~~l~~~L~~i~~  273 (278)
T 1byg_A          250 CWHLDAAMRPSFLQLREQLEHIKT  273 (278)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HhcCChhhCCCHHHHHHHHHHHHh
Confidence            999999999999999999988754

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.1e-37  Score=343.93  Aligned_cols=232  Identities=17%  Similarity=0.138  Sum_probs=179.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHH---HHhhccCCCCceeEE-------EEEecCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFI---TRIGTVRHKNLIRLL-------GFCYNRH  676 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~---~~l~~l~H~niv~l~-------~~~~~~~  676 (872)
                      ..+.||+|+||.||+|+. .+|+.||||++...    ....+.+.+|+   +.+++++|||||+++       +++.+++
T Consensus        77 ~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~  156 (377)
T 3byv_A           77 RGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQ  156 (377)
T ss_dssp             EEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTT
T ss_pred             EcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccC
Confidence            788999999999999996 67999999999742    23457788999   556667899999998       6666553


Q ss_pred             -----------------eeEEEEcccCCCChHHHhhCC--C-C------HHHHHHHHHHHHHHHHHHhhCCCCCcccCCC
Q 002875          677 -----------------QAYLLYDYLPNGNLSEKIRTK--R-D------WAAKYKIVLGVARGLCFLHHDCYPAIPHGDL  730 (872)
Q Consensus       677 -----------------~~~lv~ey~~~g~L~~~l~~~--~-~------~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdl  730 (872)
                                       ..|+||||+ +|+|.+++...  . .      +..+..|+.|+++||+|||+.   +|+||||
T Consensus       157 ~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDi  232 (377)
T 3byv_A          157 KKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYL  232 (377)
T ss_dssp             SCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TEECSCC
T ss_pred             CccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCC
Confidence                             278999999 68999999752  2 2      467788999999999999999   9999999


Q ss_pred             CCCCeeeCCCCCeeEccccccccccccCCCCcccccccCchhhhccc-----------CCcccccchhHHHHHHHHHcCC
Q 002875          731 KASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAM-----------KEEMYMDVYGFGEIILEILTNG  799 (872)
Q Consensus       731 k~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----------~~~~~~Dv~S~Gvil~el~tg~  799 (872)
                      ||+||+++.++.+||+|||+++....... ...+ ..|.+||+....           .++.++|||||||++|||+||+
T Consensus       233 kp~NIll~~~~~~kL~DFG~a~~~~~~~~-~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~  310 (377)
T 3byv_A          233 RPVDIVLDQRGGVFLTGFEHLVRDGARVV-SSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD  310 (377)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEETTCEEE-CCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             CHHHEEEcCCCCEEEEechhheecCCccc-CCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCC
Confidence            99999999999999999999975432221 2234 668888988776           7899999999999999999999


Q ss_pred             CCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       800 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .||........      ........     +   ....++.+++.+||+.||++|||++|++++
T Consensus       311 ~Pf~~~~~~~~------~~~~~~~~-----~---~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  360 (377)
T 3byv_A          311 LPITKDAALGG------SEWIFRSC-----K---NIPQPVRALLEGFLRYPKEDRLLPLQAMET  360 (377)
T ss_dssp             CCC------CC------SGGGGSSC-----C---CCCHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred             CCCcccccccc------hhhhhhhc-----c---CCCHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence            99875432211      11111110     1   112457789999999999999999999863

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=5.3e-37  Score=350.58  Aligned_cols=248  Identities=17%  Similarity=0.203  Sum_probs=191.9

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||++....   ...+.+.+|+.++++++|||||+++++|.+.+..|
T Consensus        35 ~~~~y~--~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  112 (494)
T 3lij_A           35 LSEMYQ--RVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYY  112 (494)
T ss_dssp             HHHHEE--EEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             hhcCeE--EeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            445566  889999999999999986 578999999997532   23567889999999999999999999999999999


Q ss_pred             EEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC---CCeeEccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN---MEPHLAEFGFKYLT  754 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~---~~~ki~dfg~~~~~  754 (872)
                      +|||||++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++..   +.+||+|||+++..
T Consensus       113 lv~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~  189 (494)
T 3lij_A          113 LVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF  189 (494)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             EEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence            99999999999998864  467888899999999999999999   99999999999999764   55999999998765


Q ss_pred             cccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          755 QLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       755 ~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                      ..... ....++.+|.+||+.. ..++.++||||+||++|||+||..||.+.....      ....+.........+.+.
T Consensus       190 ~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~  262 (494)
T 3lij_A          190 ENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE------ILRKVEKGKYTFDSPEWK  262 (494)
T ss_dssp             BTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHTCCCCCSGGGT
T ss_pred             CCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCCCCCchhcc
Confidence            43322 2223566788889876 458889999999999999999999987543211      111111111011111222


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .....+.+++.+||+.||++|||++|++++
T Consensus       263 ~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          263 NVSEGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             cCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence            334567899999999999999999999864

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.7e-37  Score=327.83  Aligned_cols=246  Identities=17%  Similarity=0.195  Sum_probs=192.0

Q ss_pred             chhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCee-EEEEc
Q 002875          611 TECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA-YLLYD  683 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~-~lv~e  683 (872)
                      ...+.||+|+||.||+|...    ++..||||.+....  ...+.+.+|+.++++++|||||++++++.+.+.. ++|||
T Consensus        24 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e  103 (298)
T 3pls_A           24 HSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLP  103 (298)
T ss_dssp             EEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEC
T ss_pred             ccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEe
Confidence            36688999999999999842    23479999987532  3456788999999999999999999999876654 99999


Q ss_pred             ccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--
Q 002875          684 YLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       684 y~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--  758 (872)
                      |+.+|+|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......  
T Consensus       104 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  180 (298)
T 3pls_A          104 YMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYY  180 (298)
T ss_dssp             CCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGG
T ss_pred             cccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccCCccc
Confidence            9999999999975   347888999999999999999999   99999999999999999999999999986542211  


Q ss_pred             ----CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          759 ----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       759 ----~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                          .....+...|.+||...+..++.++||||+||++|||+||+.|++.........  .   ..........+.   .
T Consensus       181 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~--~---~~~~~~~~~~~~---~  252 (298)
T 3pls_A          181 SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLT--H---FLAQGRRLPQPE---Y  252 (298)
T ss_dssp             CSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHH--H---HHHTTCCCCCCT---T
T ss_pred             ccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHH--H---HhhcCCCCCCCc---c
Confidence                111224455778888888888999999999999999999888876543322110  1   011111011111   1


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ....+.+++.+||+.||++|||++|+++.|+.+
T Consensus       253 ~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~  285 (298)
T 3pls_A          253 CPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQI  285 (298)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            224577899999999999999999999999865

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=4.9e-37  Score=327.60  Aligned_cols=248  Identities=20%  Similarity=0.231  Sum_probs=191.4

Q ss_pred             cchhhhccCCCCCceeeeecCC----CcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEe-cCCeeEEEE
Q 002875          610 STECEEAARPQSAAGCKAVLPT----GITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCY-NRHQAYLLY  682 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~----g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~-~~~~~~lv~  682 (872)
                      +...+.||+|+||.||+|+..+    +..||||.+....  ...+.+.+|+.++++++|||||+++++|. .++..++||
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  106 (298)
T 3f66_A           27 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  106 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             hhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEE
Confidence            4478899999999999998532    3468999987532  34567889999999999999999999975 456789999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+++|+|.+++..   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus       107 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  183 (298)
T 3f66_A          107 PYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEY  183 (298)
T ss_dssp             ECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGG
T ss_pred             eCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcccccccccccch
Confidence            99999999999975   357888999999999999999999   999999999999999999999999999875432211


Q ss_pred             ------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          760 ------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       760 ------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                            ....++..|.+||...+..++.++||||+||++|||+||+.|++..........     ..........+..  
T Consensus       184 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--  256 (298)
T 3f66_A          184 YSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV-----YLLQGRRLLQPEY--  256 (298)
T ss_dssp             CBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHH-----HHHTTCCCCCCTT--
T ss_pred             hccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHH-----HHhcCCCCCCCcc--
Confidence                  111233457788888888889999999999999999997776654433221110     1111110111111  


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                       ....+.+++.+||+.||++|||++|+++.|+++.
T Consensus       257 -~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~  290 (298)
T 3f66_A          257 -CPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIF  290 (298)
T ss_dssp             -CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence             1245778999999999999999999999998763

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.6e-36  Score=333.59  Aligned_cols=252  Identities=20%  Similarity=0.237  Sum_probs=189.1

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCC-----
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-----  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----  676 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|+.++++++|||||++++++...+     
T Consensus        25 ~~y~--~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~  102 (371)
T 2xrw_A           25 KRYQ--NLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  102 (371)
T ss_dssp             TTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred             hhee--EeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence            4455  889999999999999985 57899999999753   233566789999999999999999999997654     


Q ss_pred             -eeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          677 -QAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       677 -~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                       ..|+||||++ |+|.+.+....++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       103 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  178 (371)
T 2xrw_A          103 QDVYIVMELMD-ANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  178 (371)
T ss_dssp             CEEEEEEECCS-EEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-----
T ss_pred             cceEEEEEcCC-CCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecccccc
Confidence             7899999997 589999988889999999999999999999999   99999999999999999999999999987653


Q ss_pred             ccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-ccccc---------------
Q 002875          756 LADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DGLLG---------------  818 (872)
Q Consensus       756 ~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~~~~---------------  818 (872)
                      .... ....++..|.+||...+..++.++||||+||++|||+||+.||.+......+.. .....               
T Consensus       179 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  258 (371)
T 2xrw_A          179 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVR  258 (371)
T ss_dssp             -----------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHH
T ss_pred             cccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHH
Confidence            3221 122355668888988888889999999999999999999999875432110000 00000               


Q ss_pred             ---------------ccccccccCC-CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 ---------------EMYNENEVGS-SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ---------------~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                     ........+. .........++.+++.+||+.||++|||++|++++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          259 TYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             HHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                           0000000000 01112335678899999999999999999999875

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=7e-37  Score=356.76  Aligned_cols=240  Identities=15%  Similarity=0.169  Sum_probs=189.0

Q ss_pred             hccCCCCCceeeeec---CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          615 EAARPQSAAGCKAVL---PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~---~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      .||+|+||.||+|..   .++..||||+++...  ...+.+.+|+++|++++|||||+++++|.+ +..|+|||||++|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~  421 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP  421 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence            699999999999975   356789999997642  346788999999999999999999999986 56899999999999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-----
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-----  761 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-----  761 (872)
                      |.+++..   ..++.+...++.||++||+|||+.   +|+||||||+|||++.++.+||+|||+++.........     
T Consensus       422 L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~  498 (613)
T 2ozo_A          422 LHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSA  498 (613)
T ss_dssp             HHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----------
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccC
Confidence            9999964   357899999999999999999999   99999999999999999999999999997653222111     


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ......|.+||+.....++.++|||||||++|||+| |+.||.......   ...   .+........++   ....++.
T Consensus       499 ~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~---~~~---~i~~~~~~~~p~---~~~~~l~  569 (613)
T 2ozo_A          499 GKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE---VMA---FIEQGKRMECPP---ECPPELY  569 (613)
T ss_dssp             ---CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH---HHH---HHHTTCCCCCCT---TCCHHHH
T ss_pred             CCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---HHH---HHHcCCCCCCCC---cCCHHHH
Confidence            112234778888888889999999999999999998 888886533211   001   111111011111   2235677


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          841 DVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +++..||+.||++||+++++++.|+.+
T Consensus       570 ~li~~cl~~dP~~RPs~~~l~~~L~~~  596 (613)
T 2ozo_A          570 ALMSDCWIYKWEDRPDFLTVEQRMRAC  596 (613)
T ss_dssp             HHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            899999999999999999999998764

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.8e-37  Score=340.23  Aligned_cols=255  Identities=22%  Similarity=0.288  Sum_probs=184.7

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccC-CCCceeEEEEEecCC-
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRH-  676 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~-  676 (872)
                      .+.+.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|+.+++++. |||||++++++..++ 
T Consensus         6 ~~~~~y~--~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~   83 (388)
T 3oz6_A            6 HVLRKYE--LVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADND   83 (388)
T ss_dssp             HHHTTEE--EEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTS
T ss_pred             cccCceE--EEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCC
Confidence            3455666  889999999999999985 67999999998642   234556778999999997 999999999997544 


Q ss_pred             -eeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          677 -QAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       677 -~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                       ..|+|||||+ |+|.++++. ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        84 ~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  159 (388)
T 3oz6_A           84 RDVYLVFDYME-TDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSF  159 (388)
T ss_dssp             SCEEEEEECCS-EEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred             CEEEEEecccC-cCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence             7899999998 699999875 467888899999999999999999   9999999999999999999999999999754


Q ss_pred             cccC-----------------------CCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC
Q 002875          755 QLAD-----------------------GSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN  810 (872)
Q Consensus       755 ~~~~-----------------------~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~  810 (872)
                      ....                       .....++.+|.+||+..+ ..++.++||||+||++|||+||+.||.+......
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~  239 (388)
T 3oz6_A          160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQ  239 (388)
T ss_dssp             SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred             cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            2210                       011235677888998765 6788999999999999999999999875432110


Q ss_pred             ccc-ccccc--------ccccc---------------cccCCCCchH-------------HHHHHHHHHHHHcccCCCCC
Q 002875          811 KPI-DGLLG--------EMYNE---------------NEVGSSSSLQ-------------DEIKLVLDVALLCTRSTPSD  853 (872)
Q Consensus       811 ~~~-~~~~~--------~~~~~---------------~~~~~~~~~~-------------~~~~~~~~l~~~cl~~dp~~  853 (872)
                      ... .....        ....+               ..........             ....++.+++.+||+.||++
T Consensus       240 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~  319 (388)
T 3oz6_A          240 LERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNK  319 (388)
T ss_dssp             HHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGG
T ss_pred             HHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCccc
Confidence            000 00000        00000               0000000000             12346889999999999999


Q ss_pred             CCCHHHHHHH
Q 002875          854 RPSMEEALKL  863 (872)
Q Consensus       854 Rpt~~~v~~~  863 (872)
                      |||++|++++
T Consensus       320 R~t~~e~l~H  329 (388)
T 3oz6_A          320 RISANDALKH  329 (388)
T ss_dssp             SCCHHHHTTS
T ss_pred             CCCHHHHhCC
Confidence            9999999987

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=3e-37  Score=337.48  Aligned_cols=237  Identities=16%  Similarity=0.101  Sum_probs=182.2

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHH-hhccCCCCceeEEEEEecCCeeEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITR-IGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~-l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      .|.  ..+.||+|+||.||+|.. .+|+.||||+++....    ..+.+.+|..+ ++.++|||||++++++.+.+..|+
T Consensus        39 ~y~--~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           39 DFH--FLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GEE--EEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             heE--EEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            355  889999999999999986 5688999999975432    23344555555 577899999999999999999999


Q ss_pred             EEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          681 LYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ||||+++|+|.+++.+  ..++.+...++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++......
T Consensus       117 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~  193 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN  193 (373)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCC
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccccCC
Confidence            9999999999999975  457788889999999999999999   99999999999999999999999999987532221


Q ss_pred             --CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          759 --GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       759 --~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                        .....++..|.+||+..+..++.++||||+||++|||+||..||......      .....+.... ...++.   ..
T Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~------~~~~~i~~~~-~~~~~~---~~  263 (373)
T 2r5t_A          194 STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA------EMYDNILNKP-LQLKPN---IT  263 (373)
T ss_dssp             CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHH------HHHHHHHHSC-CCCCSS---SC
T ss_pred             CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH------HHHHHHHhcc-cCCCCC---CC
Confidence              22233667788999988888999999999999999999999999753311      1111111111 111111   22


Q ss_pred             HHHHHHHHHcccCCCCCCCCHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSME  858 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~  858 (872)
                      ..+.+++.+||+.||++||++.
T Consensus       264 ~~~~~li~~lL~~dp~~R~~~~  285 (373)
T 2r5t_A          264 NSARHLLEGLLQKDRTKRLGAK  285 (373)
T ss_dssp             HHHHHHHHHHTCSSGGGSTTTT
T ss_pred             HHHHHHHHHHcccCHHhCCCCC
Confidence            4577889999999999999974

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=1.3e-37  Score=336.61  Aligned_cols=255  Identities=20%  Similarity=0.241  Sum_probs=196.0

Q ss_pred             cchhhhccCCCCCceeeee-----cCCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEe--cCCeeEEE
Q 002875          610 STECEEAARPQSAAGCKAV-----LPTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCY--NRHQAYLL  681 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~-----~~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~--~~~~~~lv  681 (872)
                      |...+.||+|+||.||+|.     ..+|+.||||++.... ...+.+.+|++++++++||||+++++++.  +.+..++|
T Consensus        25 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv  104 (327)
T 3lxl_A           25 LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLV  104 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEE
T ss_pred             hhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEE
Confidence            3488999999999999998     3578999999997543 34567899999999999999999999987  45678999


Q ss_pred             EcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          682 YDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      |||+++|+|.+++..   ..++.++..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~  181 (327)
T 3lxl_A          105 MEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDK  181 (327)
T ss_dssp             EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEECCTTC
T ss_pred             EeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceecccCC
Confidence            999999999999865   368999999999999999999999   99999999999999999999999999987643222


Q ss_pred             C-----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC--------Cccccccccccccccc
Q 002875          759 G-----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ--------NKPIDGLLGEMYNENE  825 (872)
Q Consensus       759 ~-----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~--------~~~~~~~~~~~~~~~~  825 (872)
                      .     ....++.+|.+||...+..++.++||||+||++|||+||+.||.......        .........+......
T Consensus       182 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (327)
T 3lxl_A          182 DYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQ  261 (327)
T ss_dssp             SEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTC
T ss_pred             ccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhccc
Confidence            1     11224445788888887788899999999999999999999876322100        0000000000000000


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .  .+........+.+++.+||+.||++|||++|++++|+.+..
T Consensus       262 ~--~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~  303 (327)
T 3lxl_A          262 R--LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWS  303 (327)
T ss_dssp             C--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC--
T ss_pred             C--CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            0  01111223567889999999999999999999999987743

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=5.6e-37  Score=348.47  Aligned_cols=242  Identities=13%  Similarity=0.107  Sum_probs=193.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|+.++++++|||||++++++.+.+..|+||||++
T Consensus       189 ~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~  268 (543)
T 3c4z_A          189 DFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMN  268 (543)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEecc
Confidence            778899999999999986 579999999997532    234567889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          687 NGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       687 ~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      +|+|.+++..      ..++.....++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++........
T Consensus       269 gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~  345 (543)
T 3c4z_A          269 GGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK  345 (543)
T ss_dssp             TCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCC
T ss_pred             CCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcc
Confidence            9999999865      357788889999999999999999   9999999999999999999999999999765433221


Q ss_pred             --CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          761 --FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       761 --~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                        ...++..|.+||+..+..++.++||||+||++|||+||+.||........  .......+.... ...++   .....
T Consensus       346 ~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~--~~~~~~~i~~~~-~~~p~---~~s~~  419 (543)
T 3c4z_A          346 TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE--NKELKQRVLEQA-VTYPD---KFSPA  419 (543)
T ss_dssp             BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCC--HHHHHHHHHHCC-CCCCT---TSCHH
T ss_pred             cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchh--HHHHHHHHhhcc-cCCCc---ccCHH
Confidence              22466778899998888899999999999999999999999975432111  011111111111 11111   22346


Q ss_pred             HHHHHHHcccCCCCCCCCH-----HHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSM-----EEALK  862 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~-----~~v~~  862 (872)
                      +.+++.+||+.||++||++     +|+.+
T Consensus       420 ~~~li~~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          420 SKDFCEALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             HHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             HHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence            7789999999999999975     66654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=4.4e-37  Score=337.22  Aligned_cols=249  Identities=16%  Similarity=0.169  Sum_probs=193.3

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ...+.||+|+||.||+|.. .+|+.||+|++...  ....+.+.+|+.++++++|||||++++++.+++..++||||+++
T Consensus        36 ~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  115 (360)
T 3eqc_A           36 EKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDG  115 (360)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred             eeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCC
Confidence            3888999999999999986 47999999999754  23356788999999999999999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI  765 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~  765 (872)
                      |+|.+++..  ..++.....++.|++.||+|||+.+  +|+||||||+||+++.++.+||+|||+++...........++
T Consensus       116 ~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt  193 (360)
T 3eqc_A          116 GSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT  193 (360)
T ss_dssp             CBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCC
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCC
Confidence            999999975  4678888999999999999999832  799999999999999999999999999865433333333455


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-------------------------------
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-------------------------------  814 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-------------------------------  814 (872)
                      ..|.+||...+..++.++||||+||++|||+||+.||............                               
T Consensus       194 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (360)
T 3eqc_A          194 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRP  273 (360)
T ss_dssp             CTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------
T ss_pred             CCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCC
Confidence            6688899988888899999999999999999999998743211000000                               


Q ss_pred             -----ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          815 -----GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       815 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                           ...............  ......++.+++.+||+.||++|||++|++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  325 (360)
T 3eqc_A          274 PMAIFELLDYIVNEPPPKLP--SGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  325 (360)
T ss_dssp             CCCHHHHHHHHHHSCCCCCC--TTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             cccchhhhhHHhccCCCCCC--cccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence                 000000000000000  01123467899999999999999999999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=3.3e-37  Score=351.97  Aligned_cols=248  Identities=17%  Similarity=0.201  Sum_probs=196.8

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCee
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  678 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||++...    ....+.+.+|+.++++++|||||+++++|.+.+..
T Consensus        24 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~  101 (484)
T 3nyv_A           24 FSDRYK--GQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYF  101 (484)
T ss_dssp             HHHHEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             ccCceE--EeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            445566  889999999999999986 48999999999653    23467788999999999999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee---CCCCCeeEcccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGFKYL  753 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill---~~~~~~ki~dfg~~~~  753 (872)
                      |+|||||++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+++.
T Consensus       102 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  178 (484)
T 3nyv_A          102 YLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTH  178 (484)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred             EEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence            999999999999999865  457888899999999999999999   99999999999999   4678999999999876


Q ss_pred             ccccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          754 TQLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       754 ~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                      ....... ...++.+|.+||...+ .++.++||||+||++|||+||..||.......      ....+.........+.+
T Consensus       179 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~  251 (484)
T 3nyv_A          179 FEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYD------ILKKVEKGKYTFELPQW  251 (484)
T ss_dssp             BCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCSGGG
T ss_pred             cccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHcCCCCCCCccc
Confidence            5432211 1235667888898765 58889999999999999999999987543211      11111111101111222


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......+.+++.+||+.||++|||++|++++
T Consensus       252 ~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  282 (484)
T 3nyv_A          252 KKVSESAKDLIRKMLTYVPSMRISARDALDH  282 (484)
T ss_dssp             GGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence            3334567899999999999999999999864

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=2.8e-37  Score=338.97  Aligned_cols=250  Identities=12%  Similarity=0.062  Sum_probs=188.7

Q ss_pred             hcCcchhhhccCCCCCceeeeecCC------CcEEEEEEeeccchh------------HHHHHHHHHHhhccCCCCceeE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVLPT------GITVSVKKIEWGATR------------IKIVSEFITRIGTVRHKNLIRL  668 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~~~------g~~vavK~~~~~~~~------------~~~~~~e~~~l~~l~H~niv~l  668 (872)
                      .|.  ..+.||+|+||.||+|...+      ++.||||++......            ...+.+|+..++.++|||||++
T Consensus        36 ~y~--~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           36 AWK--VGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             EEE--EEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             eEE--EEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            455  88999999999999998644      578999998754321            1123445667788899999999


Q ss_pred             EEEEecC----CeeEEEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC--C
Q 002875          669 LGFCYNR----HQAYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD--E  739 (872)
Q Consensus       669 ~~~~~~~----~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~--~  739 (872)
                      ++++...    ...|+||||| +|+|.+++..   ..++.++..|+.|++.||+|||+.   +|+||||||+||+++  .
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~  189 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKN  189 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSC
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCC
Confidence            9999764    4589999999 9999999965   368999999999999999999999   999999999999999  8


Q ss_pred             CCCeeEccccccccccccCC---------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC
Q 002875          740 NMEPHLAEFGFKYLTQLADG---------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN  810 (872)
Q Consensus       740 ~~~~ki~dfg~~~~~~~~~~---------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~  810 (872)
                      ++.+||+|||+++.......         ....++..|++||...+..++.++|||||||++|||+||+.||.+......
T Consensus       190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~  269 (364)
T 3op5_A          190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPK  269 (364)
T ss_dssp             TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHH
T ss_pred             CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHH
Confidence            89999999999975432211         111255668888988888899999999999999999999999874322111


Q ss_pred             cccc------ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          811 KPID------GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       811 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ....      .......+....  .   .....++.+++..||+.||++||+++++++.|+.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~  327 (364)
T 3op5_A          270 YVRDSKIRYRENIASLMDKCFP--A---ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG  327 (364)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHSC--T---TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHhcc--c---ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence            1000      000000000000  0   01134677899999999999999999999998754

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.7e-37  Score=329.89  Aligned_cols=249  Identities=20%  Similarity=0.241  Sum_probs=189.3

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||++.....   ..+.+.+|++++++++||||+++++++.+.+..++||||+++
T Consensus         7 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   86 (311)
T 4agu_A            7 KIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDH   86 (311)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred             EeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCC
Confidence            788999999999999986 5699999999865332   256678899999999999999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      |+|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++........  ....
T Consensus        87 ~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  163 (311)
T 4agu_A           87 TVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEV  163 (311)
T ss_dssp             EHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC----------
T ss_pred             chHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCc
Confidence            999998865  357888999999999999999999   999999999999999999999999999876542221  1223


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-ccccc-------------ccccccccCC
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DGLLG-------------EMYNENEVGS  828 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~  828 (872)
                      ++.+|.+||...+ ..++.++||||+||++|||+||+.||........... .....             ........+.
T Consensus       164 ~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (311)
T 4agu_A          164 ATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPD  243 (311)
T ss_dssp             --GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCC
T ss_pred             CCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCC
Confidence            5566788887754 5678999999999999999999999875432110000 00000             0000000000


Q ss_pred             C---Cc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          829 S---SS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       829 ~---~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .   ..    .+.....+.+++.+||+.||++|||++|++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          244 PEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             CSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             ccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            0   00    01233467899999999999999999999865

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=6.3e-37  Score=331.24  Aligned_cols=245  Identities=22%  Similarity=0.288  Sum_probs=191.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcE--EEEEEeecc--chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGIT--VSVKKIEWG--ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~--vavK~~~~~--~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|.. .+|..  ||||.++..  ....+.+.+|+++++++ +||||+++++++.+.+..|+||||+
T Consensus        29 ~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~  108 (327)
T 1fvr_A           29 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA  108 (327)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             ceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecC
Confidence            788999999999999986 45664  499998753  23456788999999999 8999999999999999999999999


Q ss_pred             CCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          686 PNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       686 ~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      ++|+|.+++...                  .++.+.+.++.|+++||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus       109 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kL~D  185 (327)
T 1fvr_A          109 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIAD  185 (327)
T ss_dssp             TTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECC
T ss_pred             CCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeEEEcc
Confidence            999999999753                  57888899999999999999999   999999999999999999999999


Q ss_pred             ccccccccccCCCC-cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccc
Q 002875          748 FGFKYLTQLADGSF-PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENE  825 (872)
Q Consensus       748 fg~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~  825 (872)
                      ||+++......... ..+...|.+||......++.++||||+||++|||+| |+.||.......      ....+.....
T Consensus       186 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~------~~~~~~~~~~  259 (327)
T 1fvr_A          186 FGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE------LYEKLPQGYR  259 (327)
T ss_dssp             TTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHHHGGGTCC
T ss_pred             cCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH------HHHHhhcCCC
Confidence            99986433222111 123345778888877778899999999999999999 888886433111      0111111100


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ...+.   .....+.+++.+||+.||++|||++|++++|+.+.
T Consensus       260 ~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  299 (327)
T 1fvr_A          260 LEKPL---NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  299 (327)
T ss_dssp             CCCCT---TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCCC---CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            11111   12346778999999999999999999999998663

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-36  Score=329.83  Aligned_cols=244  Identities=19%  Similarity=0.263  Sum_probs=188.6

Q ss_pred             hhhhccCCCCCceeeeecCC-----CcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLPT-----GITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~-----g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+.||+|+||.||+|....     +..||||.+....  .....+.+|+.++++++|||||++++++.+.+..++||||
T Consensus        48 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  127 (333)
T 1mqb_A           48 RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEY  127 (333)
T ss_dssp             EEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             cccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeC
Confidence            66889999999999998532     3469999997542  3355788999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          685 LPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       685 ~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      +++|+|.+++..   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.........
T Consensus       128 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  204 (333)
T 1mqb_A          128 MENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT  204 (333)
T ss_dssp             CTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----------
T ss_pred             CCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhccccccc
Confidence            999999999975   358889999999999999999999   99999999999999999999999999987643321111


Q ss_pred             -----cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          762 -----PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       762 -----~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                           ..++..|.+||......++.++|||||||++|||+| |+.||.......      ....+......+...   ..
T Consensus       205 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~------~~~~~~~~~~~~~~~---~~  275 (333)
T 1mqb_A          205 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE------VMKAINDGFRLPTPM---DC  275 (333)
T ss_dssp             ------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHHHHHTTCCCCCCT---TC
T ss_pred             cccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH------HHHHHHCCCcCCCcc---cC
Confidence                 112335778888887888999999999999999999 888886432110      111111111011111   22


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ...+.+++.+||+.||++||+++|++++|+.+
T Consensus       276 ~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~  307 (333)
T 1mqb_A          276 PSAIYQLMMQCWQQERARRPKFADIVSILDKL  307 (333)
T ss_dssp             BHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            34577899999999999999999999999765

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=5.9e-37  Score=351.12  Aligned_cols=248  Identities=17%  Similarity=0.202  Sum_probs=193.0

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--------------hhHHHHHHHHHHhhccCCCCceeE
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--------------TRIKIVSEFITRIGTVRHKNLIRL  668 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--------------~~~~~~~~e~~~l~~l~H~niv~l  668 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||++....              ...+.+.+|+.++++++|||||++
T Consensus        34 i~~~Y~--~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~  111 (504)
T 3q5i_A           34 IGESYF--KVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKL  111 (504)
T ss_dssp             GGGTEE--EEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCE
T ss_pred             cccceE--EEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeE
Confidence            344555  889999999999999986 568899999997532              224678899999999999999999


Q ss_pred             EEEEecCCeeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC---Ce
Q 002875          669 LGFCYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM---EP  743 (872)
Q Consensus       669 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~---~~  743 (872)
                      +++|.+.+..|+|||||++|+|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++   .+
T Consensus       112 ~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~  188 (504)
T 3q5i_A          112 FDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNI  188 (504)
T ss_dssp             EEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSE
T ss_pred             EEEEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccE
Confidence            9999999999999999999999998864  568899999999999999999999   999999999999998775   69


Q ss_pred             eEccccccccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccc
Q 002875          744 HLAEFGFKYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN  822 (872)
Q Consensus       744 ki~dfg~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  822 (872)
                      ||+|||+++....... ....++.+|.+||+... .++.++||||+||++|||+||..||.+.....      ....+..
T Consensus       189 kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~------~~~~i~~  261 (504)
T 3q5i_A          189 KIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQD------IIKKVEK  261 (504)
T ss_dssp             EECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHH
T ss_pred             EEEECCCCEEcCCCCccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHc
Confidence            9999999976543322 22235667888898764 58889999999999999999999987543211      1111111


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .......+.+.....++.+++.+||+.||++|||++|++++
T Consensus       262 ~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          262 GKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             CCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            11000011112234568899999999999999999999864

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=1.7e-36  Score=322.03  Aligned_cols=241  Identities=19%  Similarity=0.200  Sum_probs=188.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec----CCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN----RHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|.. .+++.||+|.+....   ...+.+.+|+.++++++|||||++++++..    ....++|||
T Consensus        30 ~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e  109 (290)
T 1t4h_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE  109 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEE
T ss_pred             eeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEE
Confidence            667899999999999985 678899999997532   345678899999999999999999999875    356899999


Q ss_pred             ccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCC--cccCCCCCCCeeeC-CCCCeeEccccccccccccC
Q 002875          684 YLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPA--IPHGDLKASNIVFD-ENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       684 y~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~--i~Hrdlk~~Nill~-~~~~~ki~dfg~~~~~~~~~  758 (872)
                      |+++|+|.+++..  ..++.....++.|++.||+|||+.   +  |+||||||+||+++ .++.+||+|||++.......
T Consensus       110 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~  186 (290)
T 1t4h_A          110 LMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF  186 (290)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS
T ss_pred             ecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccc
Confidence            9999999999975  568888999999999999999998   6  99999999999998 78999999999986543332


Q ss_pred             CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          759 GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      .....+...|.+||.... .++.++||||+||++|||+||+.||.........     ..........  .........+
T Consensus       187 ~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~  258 (290)
T 1t4h_A          187 AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQI-----YRRVTSGVKP--ASFDKVAIPE  258 (290)
T ss_dssp             BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHH-----HHHHTTTCCC--GGGGGCCCHH
T ss_pred             cccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHH-----HHHHhccCCc--cccCCCCCHH
Confidence            222234556778887764 5888999999999999999999998753321110     0001000000  0001111245


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+++.+||+.||++|||++|++++
T Consensus       259 l~~li~~~l~~dp~~Rps~~ell~h  283 (290)
T 1t4h_A          259 VKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHccCChhhCCCHHHHhhC
Confidence            7889999999999999999999875

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.2e-36  Score=322.10  Aligned_cols=239  Identities=15%  Similarity=0.176  Sum_probs=192.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||++....    ...+.+.+|++++++++||||+++++++.+.+..++||||++
T Consensus        18 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   97 (284)
T 2vgo_A           18 IGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAP   97 (284)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             eeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCC
Confidence            889999999999999986 468899999996532    124678899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++............+
T Consensus        98 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  174 (284)
T 2vgo_A           98 RGELYKELQKHGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCG  174 (284)
T ss_dssp             TEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCS
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCcccccccccC
Confidence            9999999875  467888999999999999999999   99999999999999999999999999986544322223335


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      ...|.+||...+..++.++||||+||++|||+||+.||.......      ....+.... ...++.   ....+.+++.
T Consensus       175 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~------~~~~~~~~~-~~~~~~---~~~~~~~li~  244 (284)
T 2vgo_A          175 TLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE------THRRIVNVD-LKFPPF---LSDGSKDLIS  244 (284)
T ss_dssp             CGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHTTC-CCCCTT---SCHHHHHHHH
T ss_pred             CCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH------HHHHHhccc-cCCCCc---CCHHHHHHHH
Confidence            566788898888888899999999999999999999986432111      001111111 111111   2245778999


Q ss_pred             HcccCCCCCCCCHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +||+.||++|||++|++++
T Consensus       245 ~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          245 KLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             HHSCSSGGGSCCHHHHHTC
T ss_pred             HHhhcCHhhCCCHHHHhhC
Confidence            9999999999999999864

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-36  Score=322.84  Aligned_cols=243  Identities=15%  Similarity=0.165  Sum_probs=191.1

Q ss_pred             hhh-hccCCCCCceeeeec---CCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECE-EAARPQSAAGCKAVL---PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~-~~g~g~~~~v~~~~~---~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+ .||+|+||.||+|+.   .+|+.||||+++..  ....+.+.+|++++++++||||+++++++. .+..++||||+
T Consensus        13 i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~   91 (287)
T 1u59_A           13 IADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLVMEMA   91 (287)
T ss_dssp             EEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECC
T ss_pred             hhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCCcEEEEEeC
Confidence            444 899999999999974   36889999999763  234667889999999999999999999994 45689999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      ++|+|.+++..   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......   
T Consensus        92 ~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  168 (287)
T 1u59_A           92 GGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYT  168 (287)
T ss_dssp             TTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEEC
T ss_pred             CCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeeccCcceee
Confidence            99999999964   358899999999999999999999   999999999999999999999999999876532221   


Q ss_pred             --CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          760 --SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       760 --~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                        ....++..|.+||......++.++||||+||++|||+| |+.||.......   ...   .+........++   ...
T Consensus       169 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~~---~i~~~~~~~~~~---~~~  239 (287)
T 1u59_A          169 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE---VMA---FIEQGKRMECPP---ECP  239 (287)
T ss_dssp             CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH---HHH---HHHTTCCCCCCT---TCC
T ss_pred             ccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH---HHH---HHhcCCcCCCCC---CcC
Confidence              11112345778888877778899999999999999999 888886433211   000   110110011111   223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+.+++..||+.||++||+++|++++|+.+
T Consensus       240 ~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~  270 (287)
T 1u59_A          240 PELYALMSDCWIYKWEDRPDFLTVEQRMRAC  270 (287)
T ss_dssp             HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            4677899999999999999999999999865

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=5.6e-37  Score=358.30  Aligned_cols=241  Identities=17%  Similarity=0.196  Sum_probs=189.4

Q ss_pred             hhccCCCCCceeeeec---CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL---PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~---~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      +.||+|+||.||+|..   .+++.||||+++....   ..+.+.+|+++|++++|||||+++++|.+ +..++|||||++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            4799999999999964   4578999999975432   35788999999999999999999999975 458899999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-----
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-----  760 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-----  760 (872)
                      |+|.++++.  ..++.+...|+.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++........     
T Consensus       454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~  530 (635)
T 4fl3_A          454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT  530 (635)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---------
T ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccccccc
Confidence            999999975  357889999999999999999999   9999999999999999999999999999765332211     


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ...++..|.+||+.....++.++|||||||++|||+| |+.||.+.....   ....+.....   ...+.   ....++
T Consensus       531 ~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~---~~~~i~~~~~---~~~p~---~~~~~l  601 (635)
T 4fl3_A          531 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---VTAMLEKGER---MGCPA---GCPREM  601 (635)
T ss_dssp             ----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HHHHHHTTCC---CCCCT---TCCHHH
T ss_pred             CCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHHcCCC---CCCCC---CCCHHH
Confidence            1112344778898888889999999999999999999 888886433211   0011111100   11111   223567


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+++..||+.||++|||++++++.|+.+
T Consensus       602 ~~li~~cl~~dP~~RPs~~~l~~~L~~~  629 (635)
T 4fl3_A          602 YDLMNLCWTYDVENRPGFAAVELRLRNY  629 (635)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            7899999999999999999999999865

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=7.6e-37  Score=329.19  Aligned_cols=246  Identities=21%  Similarity=0.217  Sum_probs=192.6

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccch--hHHHHHHHHHHhhcc-CCCCceeEEEEEecCC-eeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGAT--RIKIVSEFITRIGTV-RHKNLIRLLGFCYNRH-QAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~-~~~lv  681 (872)
                      ..+.||+|+||.||+|..      .+|+.||||++.....  ..+.+.+|+.+++++ +||||++++++|...+ ..++|
T Consensus        31 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv  110 (316)
T 2xir_A           31 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI  110 (316)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEE
T ss_pred             eeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEE
Confidence            788999999999999973      5678999999975432  355788999999999 7999999999998754 58999


Q ss_pred             EcccCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCe
Q 002875          682 YDYLPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP  743 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~  743 (872)
                      |||+++|+|.+++...                  .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~  187 (316)
T 2xir_A          111 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVV  187 (316)
T ss_dssp             EECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred             EEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCE
Confidence            9999999999999763                  46788899999999999999999   99999999999999999999


Q ss_pred             eEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccc
Q 002875          744 HLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLG  818 (872)
Q Consensus       744 ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~  818 (872)
                      ||+|||+++........    ...++..|.+||......++.++||||+||++|||+| |..||........ . .   .
T Consensus       188 kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~-~-~---~  262 (316)
T 2xir_A          188 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-F-C---R  262 (316)
T ss_dssp             EECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH-H-H---H
T ss_pred             EECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHH-H-H---H
Confidence            99999998754332211    1123445788898888888999999999999999999 7777764332110 0 0   0


Q ss_pred             ccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          819 EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .+........+.   .....+.+++.+||+.||++|||++|++++|+.+.
T Consensus       263 ~~~~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  309 (316)
T 2xir_A          263 RLKEGTRMRAPD---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  309 (316)
T ss_dssp             HHHHTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HhccCccCCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            010100011111   12245778899999999999999999999998763

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.1e-36  Score=345.15  Aligned_cols=187  Identities=17%  Similarity=0.260  Sum_probs=147.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC-----C
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----H  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~  676 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|++++++++|||||+++++|...     +
T Consensus        53 ~~y~--~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           53 DRYE--IRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             TTEE--ECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             CCeE--EeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence            3455  889999999999999985 57999999999653   23456788999999999999999999999543     5


Q ss_pred             eeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ..|+||||+. |+|.++++..  .++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus       131 ~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  206 (458)
T 3rp9_A          131 ELYVVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTV  206 (458)
T ss_dssp             CEEEEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred             eEEEEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhc
Confidence            7899999985 7999999864  57888999999999999999999   9999999999999999999999999999764


Q ss_pred             cccCC-----------------------------CCcccccccCchhhh-cccCCcccccchhHHHHHHHHHcC
Q 002875          755 QLADG-----------------------------SFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTN  798 (872)
Q Consensus       755 ~~~~~-----------------------------~~~~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg  798 (872)
                      .....                             ....++.+|.+||++ ....++.++||||+||++|||+||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             TSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             cCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence            32110                             111246778889965 566789999999999999999994

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.2e-37  Score=327.29  Aligned_cols=252  Identities=13%  Similarity=0.077  Sum_probs=190.9

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|.  ..+.+|+|+||.||+|.. .+|+.||||++.....    ..+.+.+|+.++++++||||+++++++.+++..|+
T Consensus        34 ~~y~--~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           34 GPYR--LRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             CCEE--EEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             ccEE--EEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            4455  889999999999999986 4789999999975422    24678899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          681 LYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      ||||+++|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++.......
T Consensus       112 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  188 (309)
T 2h34_A          112 DMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEK  188 (309)
T ss_dssp             EEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC--------
T ss_pred             EEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCccccccc
Confidence            9999999999999975  468889999999999999999999   99999999999999999999999999986543321


Q ss_pred             C---CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          759 G---SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       759 ~---~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      .   ....+...|.+||......++.++|||||||++|||+||+.||......   .............    .......
T Consensus       189 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~----~~~~~~~  261 (309)
T 2h34_A          189 LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS---VMGAHINQAIPRP----STVRPGI  261 (309)
T ss_dssp             --------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH---HHHHHHHSCCCCG----GGTSTTC
T ss_pred             cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH---HHHHHhccCCCCc----cccCCCC
Confidence            1   1122445678888887778889999999999999999999998743211   0000000000000    0001112


Q ss_pred             HHHHHHHHHHcccCCCCCCC-CHHHHHHHHcccCC
Q 002875          836 IKLVLDVALLCTRSTPSDRP-SMEEALKLLSGLKP  869 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rp-t~~~v~~~L~~~~~  869 (872)
                      ..++.+++.+||+.||++|| +++++++.|+....
T Consensus       262 ~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~  296 (309)
T 2h34_A          262 PVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA  296 (309)
T ss_dssp             CTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence            24577889999999999999 99999999986643

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.5e-36  Score=320.76  Aligned_cols=244  Identities=17%  Similarity=0.170  Sum_probs=189.9

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.+|+|+||.||+|+..    ++..||||.+....  ...+.+.+|+.++++++||||+++++++.+ +..++||||+
T Consensus        16 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~   94 (281)
T 3cc6_A           16 LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWIIMELY   94 (281)
T ss_dssp             EEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred             EEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEEEEecC
Confidence            7889999999999999853    34569999997542  346678899999999999999999999865 4568999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      ++|+|.+++..   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......   
T Consensus        95 ~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  171 (281)
T 3cc6_A           95 PYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKA  171 (281)
T ss_dssp             TTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC--------
T ss_pred             CCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCccccccccccc
Confidence            99999999964   368888999999999999999999   999999999999999999999999999875433221   


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      ....+...|.+||......++.++|||||||++|||+| |+.||........      ...+........+.   .....
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~  242 (281)
T 3cc6_A          172 SVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDV------IGVLEKGDRLPKPD---LCPPV  242 (281)
T ss_dssp             -CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGH------HHHHHHTCCCCCCT---TCCHH
T ss_pred             ccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHH------HHHHhcCCCCCCCC---CCCHH
Confidence            11123345778888887788999999999999999999 8888864332110      00110000011111   12245


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.||++|||++|++++|+.+.
T Consensus       243 l~~li~~~l~~~p~~Rps~~ell~~L~~~~  272 (281)
T 3cc6_A          243 LYTLMTRCWDYDPSDRPRFTELVCSLSDVY  272 (281)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence            778999999999999999999999998753

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=6.8e-37  Score=326.23  Aligned_cols=252  Identities=10%  Similarity=0.043  Sum_probs=191.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEE-ecCCeeEEEEc
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC-YNRHQAYLLYD  683 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~-~~~~~~~lv~e  683 (872)
                      +.|.  ..+.||+|+||.||+|+. .+|+.||||++..... .+.+.+|+.++++++|++++..+++| .+.+..++|||
T Consensus         9 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 4hgt_A            9 NRYR--LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             --CE--EEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CceE--EeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence            4455  889999999999999985 7899999998764322 33577889999999998887776666 56678899999


Q ss_pred             ccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee---CCCCCeeEcccccccccccc
Q 002875          684 YLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       684 y~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill---~~~~~~ki~dfg~~~~~~~~  757 (872)
                      |+ +|+|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+++.....
T Consensus        86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  161 (296)
T 4hgt_A           86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             CC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             cc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCc
Confidence            99 9999999863   468999999999999999999999   99999999999999   78899999999999765432


Q ss_pred             CC---------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCC
Q 002875          758 DG---------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       758 ~~---------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      ..         ....++..|.+||...+..++.++||||+||++|||+||+.||...........   ............
T Consensus       162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~---~~~~~~~~~~~~  238 (296)
T 4hgt_A          162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK---YERISEKKMSTP  238 (296)
T ss_dssp             TTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH---HHHHHHHHHHSC
T ss_pred             ccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhh---hhhhhcccccch
Confidence            21         122345567888988888889999999999999999999999975432221111   111100000000


Q ss_pred             -CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          829 -SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       829 -~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                       ..........+.+++.+||+.||++|||++|+++.|+.+
T Consensus       239 ~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~  278 (296)
T 4hgt_A          239 IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL  278 (296)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred             hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence             000011235688999999999999999999999999765

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.1e-36  Score=325.10  Aligned_cols=245  Identities=19%  Similarity=0.253  Sum_probs=183.2

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCC-----eeE
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-----QAY  679 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----~~~  679 (872)
                      ..+.||+|+||.||+|...    +++.||||.+....   ...+.+.+|+.++++++||||+++++++.+.+     ..+
T Consensus        38 ~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~  117 (313)
T 3brb_A           38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPM  117 (313)
T ss_dssp             EEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEE
T ss_pred             eccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccE
Confidence            7888999999999999753    45689999997532   23567889999999999999999999998754     359


Q ss_pred             EEEcccCCCChHHHhh--------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          680 LLYDYLPNGNLSEKIR--------TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~--------~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      +||||+++|+|.+++.        ...++.+.+.++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus       118 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kl~Dfg~~  194 (313)
T 3brb_A          118 VILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVADFGLS  194 (313)
T ss_dssp             EEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEEECSCSCC
T ss_pred             EEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEEeecCcc
Confidence            9999999999999983        2357889999999999999999999   9999999999999999999999999998


Q ss_pred             ccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccccc
Q 002875          752 YLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       752 ~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      +.......    ....+...|.+||......++.++|||||||++|||+| |..||.......      ...........
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~------~~~~~~~~~~~  268 (313)
T 3brb_A          195 KKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE------MYDYLLHGHRL  268 (313)
T ss_dssp             ----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG------HHHHHHTTCCC
T ss_pred             eecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH------HHHHHHcCCCC
Confidence            75432211    11123345778888888888999999999999999999 666665432211      01111111101


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ..+   ......+.+++.+||+.||++|||++|++++|+.+.
T Consensus       269 ~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~  307 (313)
T 3brb_A          269 KQP---EDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLL  307 (313)
T ss_dssp             CCB---TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCC---ccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            111   122346788999999999999999999999998763

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=3e-36  Score=317.67  Aligned_cols=248  Identities=16%  Similarity=0.179  Sum_probs=194.3

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      .+.|.  ..+.+|+|+||.||+|.. .+|+.||||++....  ...+.+.+|+.++++++||||+++++++.+.+..|+|
T Consensus         6 ~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (276)
T 2yex_A            6 VEDWD--LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF   83 (276)
T ss_dssp             HHHEE--EEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ecceE--EEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence            34565  888999999999999986 479999999997533  3456788999999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-
Q 002875          682 YDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-  758 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-  758 (872)
                      |||+++|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++....... 
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  160 (276)
T 2yex_A           84 LEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR  160 (276)
T ss_dssp             EECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred             EEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCcc
Confidence            999999999999976  357888999999999999999999   99999999999999999999999999987543211 


Q ss_pred             ---CCCcccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          759 ---GSFPAKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       759 ---~~~~~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                         .....+...|.+||......+ +.++||||+||++|||+||+.||......... .    .........  ......
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-~----~~~~~~~~~--~~~~~~  233 (276)
T 2yex_A          161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-Y----SDWKEKKTY--LNPWKK  233 (276)
T ss_dssp             ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHH-H----HHHHTTCTT--STTGGG
T ss_pred             hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHH-H----HHhhhcccc--cCchhh
Confidence               111224455778887765544 67899999999999999999998754322110 0    000000000  011112


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ....+.+++.+||+.||++|||++|++++-
T Consensus       234 ~~~~~~~li~~~l~~~p~~Rps~~~il~~~  263 (276)
T 2yex_A          234 IDSAPLALLHKILVENPSARITIPDIKKDR  263 (276)
T ss_dssp             SCHHHHHHHHHHSCSSTTTSCCHHHHTTCT
T ss_pred             cCHHHHHHHHHHCCCCchhCCCHHHHhcCc
Confidence            234677899999999999999999998753

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=8.3e-37  Score=341.69  Aligned_cols=191  Identities=19%  Similarity=0.176  Sum_probs=164.2

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc------CCCCceeEEEEEecCCeeEEEE
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV------RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l------~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      |...+.||+|+||.||+|.. .+|+.||||++.......+.+.+|+++++.+      .|+||+++++++...+..++||
T Consensus        99 y~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~  178 (429)
T 3kvw_A           99 YEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTF  178 (429)
T ss_dssp             EEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEE
T ss_pred             EEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEE
Confidence            34889999999999999975 5689999999987655566778888888776      5779999999999999999999


Q ss_pred             cccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC--eeEccccccccccc
Q 002875          683 DYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME--PHLAEFGFKYLTQL  756 (872)
Q Consensus       683 ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~--~ki~dfg~~~~~~~  756 (872)
                      ||++ |+|.+++...    .++.....++.|++.||+|||+.   +|+||||||+|||++.++.  +||+|||+++....
T Consensus       179 e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~  254 (429)
T 3kvw_A          179 ELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQ  254 (429)
T ss_dssp             CCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCEETTC
T ss_pred             eccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccceecCC
Confidence            9996 6999988652    58889999999999999999999   9999999999999999887  99999999865433


Q ss_pred             cCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCC
Q 002875          757 ADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG  805 (872)
Q Consensus       757 ~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~  805 (872)
                      ... ...++.+|.+||+..+..++.++|||||||++|||+||..||...
T Consensus       255 ~~~-~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          255 RVY-TYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             CCC-SSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc-ccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            222 223556688899988888999999999999999999999888754

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.9e-37  Score=331.22  Aligned_cols=251  Identities=18%  Similarity=0.267  Sum_probs=193.1

Q ss_pred             hhhhccCCCCCceeeee-----cCCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCC--eeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAV-----LPTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH--QAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-----~~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~--~~~lv~e  683 (872)
                      ..+.||+|+||.||+|.     ..+|+.||||++.... ...+.+.+|++++++++||||+++++++...+  ..++|||
T Consensus        45 ~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e  124 (326)
T 2w1i_A           45 FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIME  124 (326)
T ss_dssp             EEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEEC
T ss_pred             eeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEE
Confidence            78899999999999997     3578999999997543 34567899999999999999999999987654  7899999


Q ss_pred             ccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          684 YLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       684 y~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      |+++|+|.+++...   .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++....... 
T Consensus       125 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~  201 (326)
T 2w1i_A          125 YLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEY  201 (326)
T ss_dssp             CCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSE
T ss_pred             CCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhhccccccc
Confidence            99999999999753   58889999999999999999999   999999999999999999999999999876533221 


Q ss_pred             ----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCC---------CCCCccccccccccccc-cc
Q 002875          760 ----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGS---------SLQNKPIDGLLGEMYNE-NE  825 (872)
Q Consensus       760 ----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~---------~~~~~~~~~~~~~~~~~-~~  825 (872)
                          ....+...|.+||......++.++||||+||++|||+||..|+....         ..........+.+.... ..
T Consensus       202 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (326)
T 2w1i_A          202 YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGR  281 (326)
T ss_dssp             EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCC
T ss_pred             cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCC
Confidence                11123344678888877778899999999999999999988865210         00000000000011110 00


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .+.+   .....++.+++.+||+.||++|||++|+++.|+.++
T Consensus       282 ~~~~---~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~  321 (326)
T 2w1i_A          282 LPRP---DGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  321 (326)
T ss_dssp             CCCC---TTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCC---CcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            1111   122346778999999999999999999999998764

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=7.3e-37  Score=331.83  Aligned_cols=247  Identities=16%  Similarity=0.186  Sum_probs=193.0

Q ss_pred             chhhhccCCCCCceeeeecC-C-----CcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEE
Q 002875          611 TECEEAARPQSAAGCKAVLP-T-----GITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~-~-----g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv  681 (872)
                      ...+.||+|+||.||+|... +     ++.||||.+....  ...+.+.+|+.+++++ +|||||+++++|.+.+..++|
T Consensus        49 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv  128 (333)
T 2i1m_A           49 QFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVI  128 (333)
T ss_dssp             EEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             eeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEE
Confidence            37789999999999999852 2     3479999997543  3456788999999999 899999999999999999999


Q ss_pred             EcccCCCChHHHhhC----------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeE
Q 002875          682 YDYLPNGNLSEKIRT----------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL  745 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~----------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki  745 (872)
                      |||+++|+|.+++..                ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||
T Consensus       129 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl  205 (333)
T 2i1m_A          129 TEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKI  205 (333)
T ss_dssp             EECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGGGEEEB
T ss_pred             EecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCCCeEEE
Confidence            999999999999864                247788899999999999999999   9999999999999999999999


Q ss_pred             ccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccc
Q 002875          746 AEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       746 ~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      +|||+++........    ...++..|.+||......++.++|||||||++|||+| |..||........  ........
T Consensus       206 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~--~~~~~~~~  283 (333)
T 2i1m_A          206 GDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK--FYKLVKDG  283 (333)
T ss_dssp             CCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH--HHHHHHHT
T ss_pred             CccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH--HHHHHhcC
Confidence            999999754332211    1123345778888877788999999999999999999 7677754322110  00111111


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ....   .+.   .....+.+++.+||+.||++|||++|++++|+.+.
T Consensus       284 ~~~~---~~~---~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~  325 (333)
T 2i1m_A          284 YQMA---QPA---FAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQA  325 (333)
T ss_dssp             CCCC---CCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCC---CCC---CCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence            1110   011   11245778999999999999999999999998653

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=328.06  Aligned_cols=251  Identities=17%  Similarity=0.205  Sum_probs=191.3

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEe----cCCeeEEEEc
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCY----NRHQAYLLYD  683 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~----~~~~~~lv~e  683 (872)
                      |...+.||+|+||.||++.. .+|+.||||++.... ...+.+.+|++++++++|||||++++++.    ..+..++|||
T Consensus        31 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e  110 (317)
T 2buj_A           31 YLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLP  110 (317)
T ss_dssp             EEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEE
Confidence            33889999999999999986 789999999986543 34667889999999999999999999997    3457899999


Q ss_pred             ccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          684 YLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       684 y~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      |+++|+|.+++..      ..++.+.+.++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus       111 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~  187 (317)
T 2buj_A          111 FFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIH  187 (317)
T ss_dssp             CCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEESCEE
T ss_pred             eCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhcccc
Confidence            9999999999864      358889999999999999999999   9999999999999999999999999987653211


Q ss_pred             CCC-----------CcccccccCchhhhccc---CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccc
Q 002875          758 DGS-----------FPAKIAWTESGEFYNAM---KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE  823 (872)
Q Consensus       758 ~~~-----------~~~~~~~~~~~e~~~~~---~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  823 (872)
                      ...           ...++..|.+||.....   .++.++|||||||++|||+||+.||.......... ......... 
T Consensus       188 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~-~~~~~~~~~-  265 (317)
T 2buj_A          188 VEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSV-ALAVQNQLS-  265 (317)
T ss_dssp             EESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCH-HHHHHCC---
T ss_pred             cccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchh-hHHhhccCC-
Confidence            100           01124557788876543   36788999999999999999999985311100000 000000000 


Q ss_pred             cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                        .+..   ......+.+++.+||+.||++|||++|++++|+.+++.
T Consensus       266 --~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~  307 (317)
T 2buj_A          266 --IPQS---PRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPP  307 (317)
T ss_dssp             --CCCC---TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCC
T ss_pred             --CCcc---ccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCC
Confidence              1111   11234677899999999999999999999999988764

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=5.6e-37  Score=333.97  Aligned_cols=249  Identities=12%  Similarity=0.043  Sum_probs=186.9

Q ss_pred             chhhhccCCCCCceeeeecC----CCcEEEEEEeeccch------------hHHHHHHHHHHhhccCCCCceeEEEEEec
Q 002875          611 TECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGAT------------RIKIVSEFITRIGTVRHKNLIRLLGFCYN  674 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~~------------~~~~~~~e~~~l~~l~H~niv~l~~~~~~  674 (872)
                      ...+.||+|+||.||+|...    ++..||||++.....            ..+.+.+|+..++.++||||+++++++.+
T Consensus        40 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~  119 (345)
T 2v62_A           40 VLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLT  119 (345)
T ss_dssp             EEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEE
T ss_pred             EEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccccc
Confidence            38899999999999999974    678999999875421            12335677888999999999999999987


Q ss_pred             ----CCeeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC--CeeEc
Q 002875          675 ----RHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM--EPHLA  746 (872)
Q Consensus       675 ----~~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~--~~ki~  746 (872)
                          .+..|+||||+ +|+|.+++..  ..++.+++.++.|++.||+|||+.   +|+||||||+||+++.++  .+||+
T Consensus       120 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kL~  195 (345)
T 2v62_A          120 EFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPDQVYLA  195 (345)
T ss_dssp             ESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTTSEEEC
T ss_pred             ccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCCcEEEE
Confidence                67899999999 9999999976  468999999999999999999999   999999999999998877  99999


Q ss_pred             cccccccccccCC---------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccc
Q 002875          747 EFGFKYLTQLADG---------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLL  817 (872)
Q Consensus       747 dfg~~~~~~~~~~---------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~  817 (872)
                      |||+++.......         ....++..|.+||...+..++.++|||||||++|||+||+.||......... .....
T Consensus       196 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~-~~~~~  274 (345)
T 2v62_A          196 DYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA-VQTAK  274 (345)
T ss_dssp             CCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH-HHHHH
T ss_pred             eCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH-HHHHH
Confidence            9999975432211         1123455678889888888899999999999999999999998642211110 00000


Q ss_pred             cccccccccCCCCchH------HHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          818 GEMYNENEVGSSSSLQ------DEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       818 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .......    +....      ....++.+++.+||+.||++|||++++++.|+.+.
T Consensus       275 ~~~~~~~----~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~  327 (345)
T 2v62_A          275 TNLLDEL----PQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG  327 (345)
T ss_dssp             HHHHHTT----THHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred             Hhhcccc----cHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence            0000000    00000      12346888999999999999999999999998754

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=328.73  Aligned_cols=246  Identities=17%  Similarity=0.225  Sum_probs=186.7

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEE----EEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITV----SVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~v----avK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      |...+.||+|+||.||+|.. .+|+.|    |+|.+...  ....+.+.+|+.++++++|||||+++++|.+.+ .++||
T Consensus        17 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~v~   95 (327)
T 3lzb_A           17 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLIT   95 (327)
T ss_dssp             EEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEEEE
T ss_pred             ceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceEEE
Confidence            34889999999999999984 556554    67766432  234677889999999999999999999998765 78999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+++|+|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        96 ~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~  172 (327)
T 3lzb_A           96 QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK  172 (327)
T ss_dssp             CCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC---------
T ss_pred             EecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccc
Confidence            99999999999965   357888999999999999999999   999999999999999999999999999976533221


Q ss_pred             CC----cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          760 SF----PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       760 ~~----~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      ..    ..++..|.+||...+..++.++||||+||++|||+| |..||.......   .....   ........++   .
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~---~~~~~---~~~~~~~~~~---~  243 (327)
T 3lzb_A          173 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE---ISSIL---EKGERLPQPP---I  243 (327)
T ss_dssp             -------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHHHH---HTTCCCCCCT---T
T ss_pred             cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---HHHHH---HcCCCCCCCc---c
Confidence            11    112345778888888888999999999999999999 888876432211   00000   0111011111   1


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ...++.+++.+||+.||++|||++|+++.|+.+.
T Consensus       244 ~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  277 (327)
T 3lzb_A          244 CTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMA  277 (327)
T ss_dssp             BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            2345778999999999999999999999998764

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=9.3e-37  Score=325.19  Aligned_cols=251  Identities=10%  Similarity=0.042  Sum_probs=193.3

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEE-ecCCeeEEEEcc
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFC-YNRHQAYLLYDY  684 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~-~~~~~~~lv~ey  684 (872)
                      .|.  ..+.||+|+||.||+|+. .+|+.||||++..... .+.+.+|+.++++++|++++..++++ .+.+..++||||
T Consensus        10 ~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~   86 (296)
T 3uzp_A           10 RYR--LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   86 (296)
T ss_dssp             TEE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             EEE--EEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEe
Confidence            355  889999999999999995 7899999999875432 34578899999999998877766666 566788999999


Q ss_pred             cCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee---CCCCCeeEccccccccccccC
Q 002875          685 LPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       685 ~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill---~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      + +|+|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+++......
T Consensus        87 ~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~  162 (296)
T 3uzp_A           87 L-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR  162 (296)
T ss_dssp             C-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             c-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccc
Confidence            9 8999999862   468899999999999999999999   99999999999999   478899999999987654322


Q ss_pred             C---------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccc-cccccccccCC
Q 002875          759 G---------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLL-GEMYNENEVGS  828 (872)
Q Consensus       759 ~---------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~  828 (872)
                      .         ....++..|.+||...+..++.++|||||||++|||+||+.||............... ....... .  
T Consensus       163 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-~--  239 (296)
T 3uzp_A          163 THQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP-I--  239 (296)
T ss_dssp             TCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC-H--
T ss_pred             cccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCc-h--
Confidence            1         1223555678889888888899999999999999999999998754322111111000 0000000 0  


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .........++.+++.+||+.||++|||++|+++.|+.+
T Consensus       240 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~  278 (296)
T 3uzp_A          240 EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL  278 (296)
T ss_dssp             HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHH
Confidence            000011234678899999999999999999999999865

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=3e-36  Score=325.88  Aligned_cols=252  Identities=17%  Similarity=0.208  Sum_probs=184.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++.....   ..+.+.+|+.++++++|||||++++++.+++..++|
T Consensus        34 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  111 (329)
T 3gbz_A           34 DRYR--RITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI  111 (329)
T ss_dssp             GGEE--EEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhEE--EEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence            4455  889999999999999984 6899999999975432   244667899999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee-----CCCCCeeEccccccccc
Q 002875          682 YDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF-----DENMEPHLAEFGFKYLT  754 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill-----~~~~~~ki~dfg~~~~~  754 (872)
                      |||++ |+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||++     +.++.+||+|||+++..
T Consensus       112 ~e~~~-~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~  187 (329)
T 3gbz_A          112 FEYAE-NDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAF  187 (329)
T ss_dssp             EECCS-EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHH
T ss_pred             EecCC-CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCcccc
Confidence            99998 599999876  357888899999999999999999   99999999999999     45556999999998754


Q ss_pred             cccCC--CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------cccccc
Q 002875          755 QLADG--SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPIDGL  816 (872)
Q Consensus       755 ~~~~~--~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~~~~  816 (872)
                      .....  ....++..|.+||...+ ..++.++||||+||++|||+||+.||........               +.....
T Consensus       188 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (329)
T 3gbz_A          188 GIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTA  267 (329)
T ss_dssp             C-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGG
T ss_pred             CCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhh
Confidence            32221  11224556788888765 4578999999999999999999999875432110               000000


Q ss_pred             ccccccccccCCCCchHH-----HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 LGEMYNENEVGSSSSLQD-----EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........+.........     ...++.+++.+||+.||++|||++|++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  319 (329)
T 3gbz_A          268 LPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH  319 (329)
T ss_dssp             STTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             hhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence            000000000000111111     23567899999999999999999999874

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=8.6e-37  Score=329.83  Aligned_cols=241  Identities=17%  Similarity=0.165  Sum_probs=189.1

Q ss_pred             hhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          614 EEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      +.||+|+||.||+|.. .+|+.||||++....   .....+.+|+.++++++ ||||+++++++.+.+..++||||+++|
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~  114 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGG  114 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCC
Confidence            7899999999999986 579999999997532   23567888999999985 699999999999999999999999999


Q ss_pred             ChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEccccccccccccCC-C
Q 002875          689 NLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLAEFGFKYLTQLADG-S  760 (872)
Q Consensus       689 ~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~dfg~~~~~~~~~~-~  760 (872)
                      +|.+++..    ..++.+...++.|++.||+|||+.   +|+||||||+||+++.   ++.+||+|||+++....... .
T Consensus       115 ~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~  191 (327)
T 3lm5_A          115 EIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELR  191 (327)
T ss_dssp             EGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC-------
T ss_pred             cHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccc
Confidence            99999854    357889999999999999999999   9999999999999997   78999999999976543221 1


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...++..|.+||......++.++||||+||++|||+||+.||.........  .. ........   ..+........+.
T Consensus       192 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~--~~-i~~~~~~~---~~~~~~~~~~~~~  265 (327)
T 3lm5_A          192 EIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETY--LN-ISQVNVDY---SEETFSSVSQLAT  265 (327)
T ss_dssp             --CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH--HH-HHHTCCCC---CTTTTTTSCHHHH
T ss_pred             cccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHH--HH-HHhccccc---CchhhcccCHHHH
Confidence            223556688899988888899999999999999999999998754321100  00 00000000   0111122334677


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||+.||++|||++|++++
T Consensus       266 ~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          266 DFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             HHHHHHcCCChhhCcCHHHHhCC
Confidence            89999999999999999999875

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=9.7e-37  Score=323.78  Aligned_cols=242  Identities=15%  Similarity=0.177  Sum_probs=188.6

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeecc---chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCee
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWG---ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~  678 (872)
                      ....|.  ..+.+|+|+||.||+|... +|+.||||++...   ......+.+|+..+.++ +|||||++++++.+++..
T Consensus         9 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~   86 (289)
T 1x8b_A            9 YTTEFH--ELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHM   86 (289)
T ss_dssp             HHHHEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEE
T ss_pred             ccchhh--hhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeE
Confidence            345566  8899999999999999864 8999999999753   23456677889999988 999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC------------
Q 002875          679 YLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN------------  740 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~------------  740 (872)
                      ++||||+++|+|.+++..      ..++.+...++.|+++||+|||+.   +|+||||||+||+++.+            
T Consensus        87 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~  163 (289)
T 1x8b_A           87 LIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDE  163 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC--------------
T ss_pred             EEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccc
Confidence            999999999999999964      358889999999999999999999   99999999999999844            


Q ss_pred             -------CCeeEccccccccccccCCCCcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc
Q 002875          741 -------MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP  812 (872)
Q Consensus       741 -------~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~  812 (872)
                             ..+||+|||.+.......  ...++..|.+||..... .++.++|||||||++|||++|..++......    
T Consensus       164 ~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~----  237 (289)
T 1x8b_A          164 DDWASNKVMFKIGDLGHVTRISSPQ--VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQW----  237 (289)
T ss_dssp             ------CCCEEECCCTTCEETTCSC--CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHH----
T ss_pred             ccccCCceEEEEcccccccccCCcc--ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHH----
Confidence                   479999999987654322  22244557777877554 5667899999999999999988766432210    


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                           ..+........++.   ....+.+++.+||+.||++|||++|++++-
T Consensus       238 -----~~~~~~~~~~~~~~---~~~~~~~li~~~l~~dp~~Rps~~~ll~h~  281 (289)
T 1x8b_A          238 -----HEIRQGRLPRIPQV---LSQEFTELLKVMIHPDPERRPSAMALVKHS  281 (289)
T ss_dssp             -----HHHHTTCCCCCSSC---CCHHHHHHHHHHTCSSGGGSCCHHHHHTCT
T ss_pred             -----HHHHcCCCCCCCcc---cCHHHHHHHHHHhCCCcccCCCHHHHhhCh
Confidence                 01111110011111   224577899999999999999999998753

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=332.79  Aligned_cols=237  Identities=10%  Similarity=0.055  Sum_probs=186.5

Q ss_pred             hhhhccCCCCCceeeee------cCCCcEEEEEEeeccchhHHHHHHHHHHhhccC---CCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAV------LPTGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~------~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|+      ..+|+.||||+++..  ....+.+|++++++++   |+||+++++++..++..|+||
T Consensus        69 ~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~  146 (365)
T 3e7e_A           69 VHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA--NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVG  146 (365)
T ss_dssp             EEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC--CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEE
T ss_pred             EEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC--ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEE
Confidence            78899999999999994      567899999999754  3445667777777776   999999999999999999999


Q ss_pred             cccCCCChHHHhhC-------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-----------CCCee
Q 002875          683 DYLPNGNLSEKIRT-------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-----------NMEPH  744 (872)
Q Consensus       683 ey~~~g~L~~~l~~-------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-----------~~~~k  744 (872)
                      |||++|+|.+++..       ..++.++..|+.|+++||+|||+.   +|+||||||+|||++.           ++.+|
T Consensus       147 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~k  223 (365)
T 3e7e_A          147 ELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLA  223 (365)
T ss_dssp             CCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC------CTTEE
T ss_pred             eccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccccccCCEE
Confidence            99999999999962       468899999999999999999998   9999999999999998           89999


Q ss_pred             EccccccccccccC----CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccc
Q 002875          745 LAEFGFKYLTQLAD----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       745 i~dfg~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      |+|||+++......    .....++.+|++||+..+..++.++|||||||++|||+||+.||....... +.    ....
T Consensus       224 l~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-~~----~~~~  298 (365)
T 3e7e_A          224 LIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE-CK----PEGL  298 (365)
T ss_dssp             ECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE-EE----ECSC
T ss_pred             EeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc-ee----echh
Confidence            99999996543211    112235667889999888889999999999999999999999986432211 00    1111


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHcccCCCCCC-CCHHHHHHHHccc
Q 002875          821 YNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDR-PSMEEALKLLSGL  867 (872)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R-pt~~~v~~~L~~~  867 (872)
                      ...     .+.    ...+.+++..|++.+|.+| |+++++.+.|+.+
T Consensus       299 ~~~-----~~~----~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~  337 (365)
T 3e7e_A          299 FRR-----LPH----LDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKV  337 (365)
T ss_dssp             CTT-----CSS----HHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHH
T ss_pred             ccc-----cCc----HHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH
Confidence            111     111    2235567788999999988 6788877776643

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.2e-37  Score=335.88  Aligned_cols=247  Identities=15%  Similarity=0.113  Sum_probs=190.8

Q ss_pred             hcCcchhhhccCCCCCceeeeec----CCCcEEEEEEeeccc-----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCC
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGA-----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRH  676 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~  676 (872)
                      .|.  ..+.||+|+||.||+|..    .+|+.||||+++...     ...+.+.+|+++++++ +||||+++++++.+.+
T Consensus        55 ~y~--~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           55 NFE--LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GEE--EEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ceE--EEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            355  889999999999999986    479999999986432     2345677889999999 6999999999999999


Q ss_pred             eeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ..++||||+++|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence            99999999999999999975  467888899999999999999999   9999999999999999999999999998754


Q ss_pred             cccCC---CCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCC
Q 002875          755 QLADG---SFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       755 ~~~~~---~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      .....   ....++..|.+||+..+  ..++.++|||||||++|||+||+.||.........  ........... ...+
T Consensus       210 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~--~~~~~~~~~~~-~~~~  286 (355)
T 1vzo_A          210 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQ--AEISRRILKSE-PPYP  286 (355)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCH--HHHHHHHHHCC-CCCC
T ss_pred             ccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchH--HHHHHHHhccC-CCCC
Confidence            32211   11224566788888764  34678899999999999999999998744322111  01111111111 1111


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHHHH
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRP-----SMEEALKLL  864 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rp-----t~~~v~~~L  864 (872)
                         .+....+.+++.+||+.||++||     |++|++++.
T Consensus       287 ---~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~  323 (355)
T 1vzo_A          287 ---QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL  323 (355)
T ss_dssp             ---TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred             ---cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence               12234577899999999999999     999998765

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.1e-36  Score=329.27  Aligned_cols=245  Identities=16%  Similarity=0.174  Sum_probs=188.0

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|..      .+|+.||||.+...  ......+.+|+.++++++||||+++++++.+.+..|+|||
T Consensus        34 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  113 (327)
T 2yfx_A           34 LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILME  113 (327)
T ss_dssp             EEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEe
Confidence            889999999999999984      46789999999643  2345678889999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhCC---------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEcccccc
Q 002875          684 YLPNGNLSEKIRTK---------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLAEFGFK  751 (872)
Q Consensus       684 y~~~g~L~~~l~~~---------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~dfg~~  751 (872)
                      |+++|+|.+++...         .++.+.+.++.|+++||+|||+.   +|+||||||+||+++.   +..+||+|||++
T Consensus       114 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~  190 (327)
T 2yfx_A          114 LMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMA  190 (327)
T ss_dssp             CCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCHHH
T ss_pred             cCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEECccccc
Confidence            99999999999752         57888999999999999999999   9999999999999984   446999999998


Q ss_pred             ccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccccccccccccccc
Q 002875          752 YLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       752 ~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      +.......    ....+...|.+||......++.++|||||||++|||+| |..||.......      ....+......
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~------~~~~~~~~~~~  264 (327)
T 2yfx_A          191 RDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE------VLEFVTSGGRM  264 (327)
T ss_dssp             HHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH------HHHHHHTTCCC
T ss_pred             cccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHH------HHHHHhcCCCC
Confidence            64332211    11123445778888877788999999999999999999 777765432110      00011111001


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ....   .....+.+++.+||+.||++|||++|++++|+.+.
T Consensus       265 ~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~  303 (327)
T 2yfx_A          265 DPPK---NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  303 (327)
T ss_dssp             CCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCC---CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHh
Confidence            0111   12245778999999999999999999999998653

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=333.22  Aligned_cols=248  Identities=17%  Similarity=0.222  Sum_probs=183.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh--HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR--IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~--~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++......  ...+.+|++++++++|||||++++++.+++..++||||++ |
T Consensus         6 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~   84 (324)
T 3mtl_A            6 KLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-K   84 (324)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-E
T ss_pred             EEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-c
Confidence            788999999999999986 47999999999753322  2234578999999999999999999999999999999997 5


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Ccc
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPA  763 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~  763 (872)
                      +|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........  ...
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  161 (324)
T 3mtl_A           85 DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEV  161 (324)
T ss_dssp             EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-----------
T ss_pred             CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCcccccccc
Confidence            99998865   357888999999999999999999   9999999999999999999999999998754322211  122


Q ss_pred             cccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc---------cccccccccc------cccC
Q 002875          764 KIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI---------DGLLGEMYNE------NEVG  827 (872)
Q Consensus       764 ~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~---------~~~~~~~~~~------~~~~  827 (872)
                      ++.+|.+||...+ ..++.++||||+||++|||+||+.||...........         ..........      ....
T Consensus       162 ~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (324)
T 3mtl_A          162 VTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPK  241 (324)
T ss_dssp             -CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCC
T ss_pred             CcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhccccccc
Confidence            4566788887754 5678999999999999999999999875431110000         0000000000      0000


Q ss_pred             -CCCc----hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 -SSSS----LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 -~~~~----~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ....    ......++.+++.+||+.||++|||++|++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          242 YRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             CCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence             0000    01123467899999999999999999999864

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=5.9e-37  Score=323.68  Aligned_cols=247  Identities=17%  Similarity=0.197  Sum_probs=192.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEe--cCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCY--NRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~--~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|.. .+|+.||||.+....   ...+.+.+|+.++++++||||+++++++.  ..+..++||||+
T Consensus        10 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~   89 (279)
T 2w5a_A           10 VLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYC   89 (279)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECC
T ss_pred             eehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCC
Confidence            789999999999999986 579999999997532   34567889999999999999999999885  356899999999


Q ss_pred             CCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCC-----cccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          686 PNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPA-----IPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       686 ~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~-----i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ++|+|.+++..      ..++.+.+.++.|++.||+|||+.   +     |+||||||+||+++.++.+||+|||+++..
T Consensus        90 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~  166 (279)
T 2w5a_A           90 EGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL  166 (279)
T ss_dssp             TTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCCHHHHC
T ss_pred             CCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCchheee
Confidence            99999999864      268899999999999999999998   6     999999999999999999999999998654


Q ss_pred             cccCCC--CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          755 QLADGS--FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       755 ~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                      ......  ...+...|.+||......++.++|||||||++|||+||+.||.......      ....+........+.  
T Consensus       167 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~i~~~~~~~~~~--  238 (279)
T 2w5a_A          167 NHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE------LAGKIREGKFRRIPY--  238 (279)
T ss_dssp             ---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHTCCCCCCT--
T ss_pred             ccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHH------HHHHHhhcccccCCc--
Confidence            322110  1123455778888887788899999999999999999999886432110      001111111001111  


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                       ....++.+++.+||+.||++|||++|+++++....++
T Consensus       239 -~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~  275 (279)
T 2w5a_A          239 -RYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHH  275 (279)
T ss_dssp             -TSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGG
T ss_pred             -ccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhc
Confidence             1234677899999999999999999999988765543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.5e-36  Score=328.91  Aligned_cols=246  Identities=14%  Similarity=0.158  Sum_probs=189.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-CCCceeEEEEEec--CCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-HKNLIRLLGFCYN--RHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~--~~~~~lv~ey~~~  687 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++..  ..+.+.+|++++++++ ||||+++++++.+  ....++||||+++
T Consensus        40 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~  117 (330)
T 3nsz_A           40 LVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNN  117 (330)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECSC--CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCC
T ss_pred             EEEEecccCCeEEEEEEECCCCcEEEEEEeccc--chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCc
Confidence            889999999999999984 78999999999743  3567889999999997 9999999999987  5678999999999


Q ss_pred             CChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccccccCC-CCcccc
Q 002875          688 GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQLADG-SFPAKI  765 (872)
Q Consensus       688 g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~~~~-~~~~~~  765 (872)
                      |+|.++++. .+..+...++.|++.||+|||+.   +|+||||||+||+++.++ .+||+|||+++....... ....+.
T Consensus       118 ~~l~~~~~~-~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  193 (330)
T 3nsz_A          118 TDFKQLYQT-LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVAS  193 (330)
T ss_dssp             CCHHHHGGG-CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSC
T ss_pred             hhHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCcccccccc
Confidence            999998864 78888999999999999999999   999999999999999776 899999999976543222 222355


Q ss_pred             cccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc--c---------c-----------cccccc
Q 002875          766 AWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID--G---------L-----------LGEMYN  822 (872)
Q Consensus       766 ~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~--~---------~-----------~~~~~~  822 (872)
                      .+|.+||.... ..++.++||||+||++|||+||+.||..+.........  .         .           ......
T Consensus       194 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (330)
T 3nsz_A          194 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILG  273 (330)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHC
T ss_pred             ccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhh
Confidence            56778887765 66889999999999999999999999654321110000  0         0           000000


Q ss_pred             c----cc--cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 E----NE--VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~----~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .    ..  ............++.+++.+||+.||++|||++|++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          274 RHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             CCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            0    00  00000011134568899999999999999999999975

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=5.5e-37  Score=328.12  Aligned_cols=248  Identities=20%  Similarity=0.228  Sum_probs=174.3

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ...+.||+|+||.||+|.. .+|+.||||++....  ...+.+.+|+.++++++||||+++++++...+..++||||+++
T Consensus        18 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   97 (303)
T 2vwi_A           18 ELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSG   97 (303)
T ss_dssp             EEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTT
T ss_pred             hhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccC
Confidence            3889999999999999985 578999999986532  3356678899999999999999999999999999999999999


Q ss_pred             CChHHHhhC----------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          688 GNLSEKIRT----------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       688 g~L~~~l~~----------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      |+|.+++..          ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        98 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  174 (303)
T 2vwi_A           98 GSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATG  174 (303)
T ss_dssp             CBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC--
T ss_pred             CchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchheeccC
Confidence            999999863          257889999999999999999999   9999999999999999999999999998654321


Q ss_pred             C-------CCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccc--ccC
Q 002875          758 D-------GSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN--EVG  827 (872)
Q Consensus       758 ~-------~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~  827 (872)
                      .       .....++..|.+||.... ..++.++||||+||++|||+||+.||.........  ...........  ...
T Consensus       175 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~  252 (303)
T 2vwi_A          175 GDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVL--MLTLQNDPPSLETGVQ  252 (303)
T ss_dssp             -------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHH--HHHHTSSCCCTTC---
T ss_pred             CCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHH--HHHhccCCCccccccc
Confidence            1       111124455777887754 56788999999999999999999998754321110  00000000000  000


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...........+.+++.+||+.||++|||++|++++
T Consensus       253 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  288 (303)
T 2vwi_A          253 DKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRH  288 (303)
T ss_dssp             --CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             cchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            000011122457789999999999999999999874

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.4e-36  Score=322.68  Aligned_cols=243  Identities=16%  Similarity=0.200  Sum_probs=189.0

Q ss_pred             hhh-hccCCCCCceeeeec---CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECE-EAARPQSAAGCKAVL---PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~-~~g~g~~~~v~~~~~---~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..+ .||+|+||.||+|..   .+++.||||++....   ...+.+.+|++++++++||||+++++++ ..+..++||||
T Consensus        20 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~   98 (291)
T 1xbb_A           20 LEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEM   98 (291)
T ss_dssp             EEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEEEEEC
T ss_pred             hccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEEEEEe
Confidence            555 899999999999953   457899999997542   2356788999999999999999999999 55678999999


Q ss_pred             cCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          685 LPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       685 ~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      +++|+|.+++...  .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++........  
T Consensus        99 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  175 (291)
T 1xbb_A           99 AELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK  175 (291)
T ss_dssp             CTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEE
T ss_pred             CCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCccc
Confidence            9999999999753  57888999999999999999999   9999999999999999999999999998754332211  


Q ss_pred             ---CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 ---FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 ---~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                         ...+...|.+||......++.++|||||||++|||+| |+.||.......   ......   .......+   ....
T Consensus       176 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~~~~---~~~~~~~~---~~~~  246 (291)
T 1xbb_A          176 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---VTAMLE---KGERMGCP---AGCP  246 (291)
T ss_dssp             C----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HHHHHH---TTCCCCCC---TTCC
T ss_pred             ccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HHHHHH---cCCCCCCC---CCCC
Confidence               1112244678888877778889999999999999999 888876433211   000000   00001111   1223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+.+++.+||+.||++|||++|+++.|+.+
T Consensus       247 ~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  277 (291)
T 1xbb_A          247 REMYDLMNLCWTYDVENRPGFAAVELRLRNY  277 (291)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            4677899999999999999999999999865

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2e-36  Score=331.61  Aligned_cols=251  Identities=20%  Similarity=0.264  Sum_probs=186.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCC-----
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-----  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----  676 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|++++++++|||||++++++...+     
T Consensus        25 ~~y~--~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           25 AVYR--DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             SSEE--EEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             ceEE--EeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            3354  888999999999999986 67999999999543   223566789999999999999999999998653     


Q ss_pred             -eeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          677 -QAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       677 -~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                       ..|+||||+ +++|.++++. ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  178 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQA  178 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeeccccc
Confidence             469999999 7899999875 468888899999999999999999   9999999999999999999999999999765


Q ss_pred             cccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc---------ccccc------
Q 002875          755 QLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI---------DGLLG------  818 (872)
Q Consensus       755 ~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~---------~~~~~------  818 (872)
                      ..... ...++.+|.+||...+ ..++.++||||+||++|||+||+.||.+.........         .....      
T Consensus       179 ~~~~~-~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~  257 (367)
T 1cm8_A          179 DSEMT-GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDE  257 (367)
T ss_dssp             CSSCC-SSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHH
T ss_pred             ccccC-cCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHH
Confidence            43222 2235667888887765 6789999999999999999999999875432110000         00000      


Q ss_pred             ------ccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 ------EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                            ....................+.+++.+||+.||++|||++|++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          258 AKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             HHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence                  000000000000011223567899999999999999999999985

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=9.6e-37  Score=330.31  Aligned_cols=253  Identities=21%  Similarity=0.282  Sum_probs=189.9

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++.....   ..+.+.+|+.++++++|||||+++++|.+.+..++|
T Consensus        25 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  102 (331)
T 4aaa_A           25 EKYE--NLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV  102 (331)
T ss_dssp             GGEE--EEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhhe--eeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence            3355  889999999999999986 5699999999865322   345678899999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          682 YDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      |||+++++|.+++..  ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus       103 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  179 (331)
T 4aaa_A          103 FEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE  179 (331)
T ss_dssp             EECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred             EecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence            999999999988754  468899999999999999999999   999999999999999999999999999875433221


Q ss_pred             --CCcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc------------------cccc
Q 002875          760 --SFPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID------------------GLLG  818 (872)
Q Consensus       760 --~~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~------------------~~~~  818 (872)
                        ....+..+|.+||...+. .++.++||||+||++|||+||+.||............                  ....
T Consensus       180 ~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T 4aaa_A          180 VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFA  259 (331)
T ss_dssp             ----CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGT
T ss_pred             ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccc
Confidence              122345667888877654 6788999999999999999999998754321100000                  0000


Q ss_pred             ccccccccCCCCc---hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 EMYNENEVGSSSS---LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+......+.   .+.....+.+++.+||+.||++|||++|++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          260 GVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             TCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             cccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            0000000000000   01234568899999999999999999998864

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=338.63  Aligned_cols=248  Identities=14%  Similarity=0.068  Sum_probs=190.0

Q ss_pred             chhhhccCCCCCceeeeecC---------CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCcee--------------
Q 002875          611 TECEEAARPQSAAGCKAVLP---------TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIR--------------  667 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~---------~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~--------------  667 (872)
                      ...+.||+|+||.||+|...         +|+.||||.+...    +.+.+|++++++++|||||+              
T Consensus        45 ~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~  120 (352)
T 2jii_A           45 KLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIP  120 (352)
T ss_dssp             EEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCC
T ss_pred             EEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHhcccchhhhhhhhccCCccCcc
Confidence            38899999999999999865         4889999999743    45778999999999999988              


Q ss_pred             -EEEEEec-CCeeEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC
Q 002875          668 -LLGFCYN-RHQAYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM  741 (872)
Q Consensus       668 -l~~~~~~-~~~~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~  741 (872)
                       +++++.. .+..|+||||+ +|+|.+++..    ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++
T Consensus       121 ~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~~~  196 (352)
T 2jii_A          121 TCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDPED  196 (352)
T ss_dssp             CCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEETTE
T ss_pred             chhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcCCC
Confidence             6777775 67899999999 9999999975    368999999999999999999999   999999999999999988


Q ss_pred             --CeeEccccccccccccCC---------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC
Q 002875          742 --EPHLAEFGFKYLTQLADG---------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN  810 (872)
Q Consensus       742 --~~ki~dfg~~~~~~~~~~---------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~  810 (872)
                        .+||+|||+++.......         ....++..|.+||...+..++.++|||||||++|||+||+.||........
T Consensus       197 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~  276 (352)
T 2jii_A          197 QSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTE  276 (352)
T ss_dssp             EEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHH
T ss_pred             CceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHH
Confidence              899999999975433211         112345568888988888889999999999999999999999875431111


Q ss_pred             cccccccccccccc-c-cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          811 KPIDGLLGEMYNEN-E-VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       811 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .. ........... . ............++.+++.+||+.||++|||++|+++.|+.+
T Consensus       277 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  334 (352)
T 2jii_A          277 DI-MKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEAL  334 (352)
T ss_dssp             HH-HHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             HH-HHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHH
Confidence            10 00000000000 0 000000011235678899999999999999999999999766

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=2e-36  Score=322.96  Aligned_cols=248  Identities=21%  Similarity=0.228  Sum_probs=193.2

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----------hhHHHHHHHHHHhhccC-CCCceeEEEEE
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----------TRIKIVSEFITRIGTVR-HKNLIRLLGFC  672 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----------~~~~~~~~e~~~l~~l~-H~niv~l~~~~  672 (872)
                      .+.|.  ..+.+|+|+||.||+|.. .+|+.||||.+....          ...+.+.+|++++++++ ||||+++++++
T Consensus        16 ~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           16 YENYE--PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             TTTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhccc--eeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            34455  889999999999999986 578999999996532          12456788999999996 99999999999


Q ss_pred             ecCCeeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          673 YNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       673 ~~~~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                      .+++..++||||+++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~  170 (298)
T 1phk_A           94 ETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGF  170 (298)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             ccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecccc
Confidence            999999999999999999999975  468889999999999999999999   999999999999999999999999999


Q ss_pred             cccccccCCC-CcccccccCchhhhc------ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccc
Q 002875          751 KYLTQLADGS-FPAKIAWTESGEFYN------AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE  823 (872)
Q Consensus       751 ~~~~~~~~~~-~~~~~~~~~~~e~~~------~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  823 (872)
                      +......... ...+...|.+||...      ...++.++||||+||++|||+||+.||.......      ....+...
T Consensus       171 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~------~~~~~~~~  244 (298)
T 1phk_A          171 SCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML------MLRMIMSG  244 (298)
T ss_dssp             CEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHT
T ss_pred             hhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHH------HHHHHhcC
Confidence            8764332211 122445577788764      3457788999999999999999999986432111      00011111


Q ss_pred             cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          824 NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......+........+.+++.+||+.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (298)
T 1phk_A          245 NYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  284 (298)
T ss_dssp             CCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             CcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence            1010111122334567899999999999999999999864

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1e-36  Score=341.76  Aligned_cols=194  Identities=18%  Similarity=0.216  Sum_probs=161.1

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC----
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR----  675 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~----  675 (872)
                      +.+.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|+.++++++|||||++++++...    
T Consensus        24 i~~~y~--~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~  101 (432)
T 3n9x_A           24 VPDNYI--IKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLK  101 (432)
T ss_dssp             CCTTEE--EEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTT
T ss_pred             ecCCEE--EEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCc
Confidence            344555  889999999999999985 67899999999753   23356788999999999999999999999866    


Q ss_pred             -CeeEEEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          676 -HQAYLLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       676 -~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                       +..|+||||++ |+|.++++..  .++.....++.||++||+|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus       102 ~~~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~  177 (432)
T 3n9x_A          102 FDELYIVLEIAD-SDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLAR  177 (432)
T ss_dssp             CCCEEEEEECCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             CCeEEEEEecCC-cCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence             57899999997 5999999874  58889999999999999999999   99999999999999999999999999997


Q ss_pred             cccccCC------------------------CCcccccccCchhhh-cccCCcccccchhHHHHHHHHHcCCCCCC
Q 002875          753 LTQLADG------------------------SFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTN  803 (872)
Q Consensus       753 ~~~~~~~------------------------~~~~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg~~p~~  803 (872)
                      .......                        ....++.+|.+||.+ ....++.++||||+||++|||+||..|+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence            6432211                        122356778889975 56678999999999999999998655443

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.5e-36  Score=329.07  Aligned_cols=239  Identities=14%  Similarity=0.160  Sum_probs=192.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||++.. .+|+.||+|++....    ...+.+.+|+.++++++||||+++++++.+.+..|+||||++
T Consensus        45 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  124 (335)
T 2owb_A           45 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCR  124 (335)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCC
Confidence            889999999999999986 468899999987532    345678899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFP  762 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~  762 (872)
                      +|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus       125 ~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  201 (335)
T 2owb_A          125 RRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL  201 (335)
T ss_dssp             TCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCC
T ss_pred             CCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccCccccccc
Confidence            9999999864  468899999999999999999999   999999999999999999999999999876432221  122


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      .+...|.+||......++.++|||||||++|||+||+.||.......      ....+.... ...+..   ....+.++
T Consensus       202 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~------~~~~~~~~~-~~~~~~---~~~~~~~l  271 (335)
T 2owb_A          202 CGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE------TYLRIKKNE-YSIPKH---INPVAASL  271 (335)
T ss_dssp             CSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHTC-CCCCTT---SCHHHHHH
T ss_pred             CCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH------HHHHHhcCC-CCCCcc---CCHHHHHH
Confidence            34556788898888788899999999999999999999986432111      000111110 001111   12356788


Q ss_pred             HHHcccCCCCCCCCHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+||+.||++|||++|++++
T Consensus       272 i~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          272 IQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             HHHHTCSSGGGSCCGGGGGGS
T ss_pred             HHHHccCChhHCcCHHHHhcC
Confidence            999999999999999999864

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.8e-36  Score=322.57  Aligned_cols=239  Identities=14%  Similarity=0.161  Sum_probs=192.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|.. .+|+.||+|.+....    ...+.+.+|+.++++++||||+++++++.+.+..++||||++
T Consensus        19 ~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   98 (294)
T 2rku_A           19 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCR   98 (294)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCC
Confidence            889999999999999996 468899999986532    345678889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFP  762 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~  762 (872)
                      +|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++........  ...
T Consensus        99 ~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  175 (294)
T 2rku_A           99 RRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL  175 (294)
T ss_dssp             TCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCC
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccCccccccc
Confidence            9999999865  468899999999999999999999   999999999999999999999999999876432211  122


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      .+...|.+||......++.++||||+||++|||+||+.||.......      ......... ...+.   .....+.++
T Consensus       176 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~------~~~~~~~~~-~~~~~---~~~~~~~~l  245 (294)
T 2rku_A          176 CGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE------TYLRIKKNE-YSIPK---HINPVAASL  245 (294)
T ss_dssp             CSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHTTC-CCCCT---TSCHHHHHH
T ss_pred             cCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHhhcc-CCCcc---ccCHHHHHH
Confidence            24556788898887788899999999999999999999986432111      000111111 01111   112457788


Q ss_pred             HHHcccCCCCCCCCHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+||+.||++|||++|++++
T Consensus       246 i~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          246 IQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             HHHHTCSSGGGSCCGGGGGGS
T ss_pred             HHHHcccChhhCcCHHHHhhC
Confidence            999999999999999999864

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=2.2e-36  Score=318.73  Aligned_cols=239  Identities=14%  Similarity=0.188  Sum_probs=185.7

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.+|+|+||.||+|... +|+.||||.+....    ...+.+.+|+..+++++||||+++++++.+++..|+||||++
T Consensus        15 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   94 (276)
T 2h6d_A           15 LGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVS   94 (276)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred             EEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccC
Confidence            7889999999999999964 79999999997532    224578899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCcc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFPA  763 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~~  763 (872)
                      +|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++........ ....
T Consensus        95 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  171 (276)
T 2h6d_A           95 GGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC  171 (276)
T ss_dssp             SCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--------
T ss_pred             CCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCCcceeccc
Confidence            9999999865  468888999999999999999999   999999999999999999999999999876433221 1122


Q ss_pred             cccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      +...|.+||...+..+ +.++||||+||++|||+||+.||.......      ....+.... ...+..   ....+.++
T Consensus       172 ~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~------~~~~~~~~~-~~~~~~---~~~~l~~l  241 (276)
T 2h6d_A          172 GSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPT------LFKKIRGGV-FYIPEY---LNRSVATL  241 (276)
T ss_dssp             -----CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCTT---SCHHHHHH
T ss_pred             CCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHH------HHHHhhcCc-ccCchh---cCHHHHHH
Confidence            4455777887765544 678999999999999999999986432110      001111000 001111   12457788


Q ss_pred             HHHcccCCCCCCCCHHHHHHH
Q 002875          843 ALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.+||+.||++|||++|++++
T Consensus       242 i~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          242 LMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHS
T ss_pred             HHHHccCChhhCCCHHHHHhC
Confidence            999999999999999999975

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=4e-36  Score=321.31  Aligned_cols=241  Identities=19%  Similarity=0.231  Sum_probs=194.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....  ...+.+.+|+.++++++||||+++++++.+.+..++||||+++|
T Consensus        26 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~  105 (303)
T 3a7i_A           26 KLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGG  105 (303)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTE
T ss_pred             HhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCC
Confidence            788999999999999985 679999999997542  34677899999999999999999999999999999999999999


Q ss_pred             ChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          689 NLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       689 ~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      +|.+++.. ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++........  ....+.
T Consensus       106 ~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~  182 (303)
T 3a7i_A          106 SALDLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGT  182 (303)
T ss_dssp             EHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSC
T ss_pred             cHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCC
Confidence            99999976 458899999999999999999999   999999999999999999999999999865433221  122345


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||......++.++|||||||++|||+||+.||.......      ....+..........   .....+.+++.+
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~l~~li~~  253 (303)
T 3a7i_A          183 PFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK------VLFLIPKNNPPTLEG---NYSKPLKEFVEA  253 (303)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHHSCCCCCCS---SCCHHHHHHHHH
T ss_pred             cCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH------HHHHhhcCCCCCCcc---ccCHHHHHHHHH
Confidence            56788898888888899999999999999999999986432111      000000000000111   122457789999


Q ss_pred             cccCCCCCCCCHHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~L  864 (872)
                      ||+.||++|||++|++++.
T Consensus       254 ~l~~dp~~Rps~~~ll~~~  272 (303)
T 3a7i_A          254 CLNKEPSFRPTAKELLKHK  272 (303)
T ss_dssp             HCCSSGGGSCCHHHHTTCH
T ss_pred             HcCCChhhCcCHHHHhhCh
Confidence            9999999999999998753

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.7e-36  Score=327.61  Aligned_cols=253  Identities=22%  Similarity=0.244  Sum_probs=187.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh------HHHHHHHHHHhhccCCCCceeEEEEEecCCee
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR------IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  678 (872)
                      +.|.  ..+.+|+|+||.||+|.. .+|+.||||++......      .+.+.+|++++++++|||||++++++.+.+..
T Consensus        10 ~~y~--~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A           10 KRYE--KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             ---C--EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             cccE--EEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            4455  889999999999999996 46999999999753211      24677899999999999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      ++||||+++ +|.+++...   .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        88 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (346)
T 1ua2_A           88 SLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFG  163 (346)
T ss_dssp             EEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTT
T ss_pred             EEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccceecc
Confidence            999999986 899888753   46788899999999999999999   99999999999999999999999999987653


Q ss_pred             ccCC--CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCC---------------Cccccccc
Q 002875          756 LADG--SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ---------------NKPIDGLL  817 (872)
Q Consensus       756 ~~~~--~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~---------------~~~~~~~~  817 (872)
                      ....  ....++.+|.+||...+ ..++.++||||+||++|||+||..||.......               .|+.....
T Consensus       164 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (346)
T 1ua2_A          164 SPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSL  243 (346)
T ss_dssp             SCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             CCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccC
Confidence            3221  12235566788887754 457889999999999999999988876433110               00000000


Q ss_pred             cccccccccCCCC---chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHH
Q 002875          818 GEMYNENEVGSSS---SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLL  864 (872)
Q Consensus       818 ~~~~~~~~~~~~~---~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L  864 (872)
                      .+.......+..+   .......++.+++.+||+.||++|||++|++++-
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~  293 (346)
T 1ua2_A          244 PDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK  293 (346)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred             cccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcCh
Confidence            0000000000000   0012235688999999999999999999999763

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.4e-36  Score=327.85  Aligned_cols=251  Identities=16%  Similarity=0.135  Sum_probs=188.5

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---------hHHHHHHHHHHhhccCCCCceeEEEE
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---------RIKIVSEFITRIGTVRHKNLIRLLGF  671 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---------~~~~~~~e~~~l~~l~H~niv~l~~~  671 (872)
                      ..+.+.|.  ..+.||+|+||.||+|.. .+|+.||||.+.....         ....+.+|++++++++||||++++++
T Consensus         6 ~~l~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   83 (322)
T 2ycf_A            6 KALRDEYI--MSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNF   83 (322)
T ss_dssp             HHHHHHEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hhhhhcee--EeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeE
Confidence            34555666  889999999999999985 5789999999864321         13357889999999999999999999


Q ss_pred             EecCCeeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC---eeEc
Q 002875          672 CYNRHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME---PHLA  746 (872)
Q Consensus       672 ~~~~~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~---~ki~  746 (872)
                      +..++ .|+||||+++|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.   +||+
T Consensus        84 ~~~~~-~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~  159 (322)
T 2ycf_A           84 FDAED-YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT  159 (322)
T ss_dssp             EESSS-EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEEC
T ss_pred             EcCCc-eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEc
Confidence            97765 8999999999999999875  357888899999999999999999   9999999999999987654   9999


Q ss_pred             cccccccccccCC-CCcccccccCchhhhc---ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccc
Q 002875          747 EFGFKYLTQLADG-SFPAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN  822 (872)
Q Consensus       747 dfg~~~~~~~~~~-~~~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~  822 (872)
                      |||+++....... ....++..|.+||...   ...++.++||||+||++|||+||..||.........  .   ..+..
T Consensus       160 Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~---~~~~~  234 (322)
T 2ycf_A          160 DFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSL--K---DQITS  234 (322)
T ss_dssp             CCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCH--H---HHHHH
T ss_pred             cCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHH--H---HHHHh
Confidence            9999875432211 0112445677888763   456788999999999999999999998754322110  0   00111


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          823 ENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......+.........+.+++.+||+.||++|||++|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h  275 (322)
T 2ycf_A          235 GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  275 (322)
T ss_dssp             TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence            00000000111234567899999999999999999999864

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=2.3e-36  Score=318.95  Aligned_cols=229  Identities=12%  Similarity=0.053  Sum_probs=181.9

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      .|.  ..+.||+|+||.||+|.. .+|+.||||++.....    ..+.+.+|+..+++++|||||++++++.+++..|+|
T Consensus        32 ~y~--i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           32 RYR--LLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TEE--EEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cEE--EEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            355  789999999999999996 4599999999975422    246788999999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          682 YDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      |||+++|+|.++++......+...|+.|++.||+|||+.   +|+||||||+||+++.++.+||+++|..          
T Consensus       110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~~~----------  176 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPATM----------  176 (286)
T ss_dssp             EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCCCC----------
T ss_pred             EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecccc----------
Confidence            999999999999987766777889999999999999999   9999999999999999999999866532          


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                              +       .++.++|||||||++|||+||+.||.+..........   ....................++.+
T Consensus       177 --------~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~  238 (286)
T 3uqc_A          177 --------P-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPA---ERDTAGQPIEPADIDRDIPFQISA  238 (286)
T ss_dssp             --------T-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEEC---CBCTTSCBCCHHHHCTTSCHHHHH
T ss_pred             --------C-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHH---HHHhccCCCChhhcccCCCHHHHH
Confidence                    1       2567789999999999999999999865432211100   000111100000001123356788


Q ss_pred             HHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          842 VALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      ++.+||+.||++| |++|+++.|+.+..
T Consensus       239 li~~~l~~dP~~R-s~~el~~~L~~~~~  265 (286)
T 3uqc_A          239 VAARSVQGDGGIR-SASTLLNLMQQATA  265 (286)
T ss_dssp             HHHHHHCTTSSCC-CHHHHHHHHHHHHC
T ss_pred             HHHHHcccCCccC-CHHHHHHHHHHHhc
Confidence            9999999999999 99999999987643

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=323.17  Aligned_cols=241  Identities=16%  Similarity=0.196  Sum_probs=188.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.+|+|+||.||+|.. .+|+.||||.+.... ..+.+.+|+.++++++||||+++++++.+.+..|+||||+++|+|
T Consensus        33 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L  111 (314)
T 3com_A           33 VLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSV  111 (314)
T ss_dssp             EEEECC----CEEEEEEETTTCCEEEEEEEETTS-CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEH
T ss_pred             hheeeccCCCeEEEEEEECCCCCEEEEEecCchH-HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCH
Confidence            888999999999999986 469999999997543 345678899999999999999999999999999999999999999


Q ss_pred             HHHhh---CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcccc
Q 002875          691 SEKIR---TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPAKI  765 (872)
Q Consensus       691 ~~~l~---~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~~~  765 (872)
                      .+++.   ...++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++........  ....+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  188 (314)
T 3com_A          112 SDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT  188 (314)
T ss_dssp             HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSC
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCC
Confidence            99986   3568899999999999999999999   999999999999999999999999999865433211  122345


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|.+||......++.++||||+||++|||+||+.||.........      ....... .............+.+++.+
T Consensus       189 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~l~~li~~  261 (314)
T 3com_A          189 PFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAI------FMIPTNP-PPTFRKPELWSDNFTDFVKQ  261 (314)
T ss_dssp             GGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHH------HHHHHSC-CCCCSSGGGSCHHHHHHHHH
T ss_pred             CCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHH------HHHhcCC-CcccCCcccCCHHHHHHHHH
Confidence            5678889888878899999999999999999999998743321100      0000000 00011111123467789999


Q ss_pred             cccCCCCCCCCHHHHHHH
Q 002875          846 CTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~  863 (872)
                      ||+.||++|||++|++++
T Consensus       262 ~l~~dp~~Rpt~~~ll~~  279 (314)
T 3com_A          262 CLVKSPEQRATATQLLQH  279 (314)
T ss_dssp             HTCSCTTTSCCHHHHTTS
T ss_pred             HccCChhhCcCHHHHHhC
Confidence            999999999999999863

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=3.7e-36  Score=320.34  Aligned_cols=242  Identities=16%  Similarity=0.164  Sum_probs=185.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ....||+|+||.||+|.. .+|+.||||.+.... ...+.+.+|+.++++++|||||++++++.+.+..++||||+++|+
T Consensus        26 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  105 (295)
T 2clq_A           26 DRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGS  105 (295)
T ss_dssp             SBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEE
T ss_pred             CcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCC
Confidence            445899999999999985 678999999997543 335678899999999999999999999999999999999999999


Q ss_pred             hHHHhhCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccccCC--CC
Q 002875          690 LSEKIRTK-----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQLADG--SF  761 (872)
Q Consensus       690 L~~~l~~~-----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~~~~--~~  761 (872)
                      |.+++...     .++.....++.|+++||+|||+.   +|+||||||+||+++. ++.+||+|||+++.......  ..
T Consensus       106 L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~  182 (295)
T 2clq_A          106 LSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTET  182 (295)
T ss_dssp             HHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CC
T ss_pred             HHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccc
Confidence            99999753     24777888999999999999999   9999999999999987 89999999999875432211  12


Q ss_pred             cccccccCchhhhccc--CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAM--KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~--~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ..+...|.+||.....  .++.++|||||||++|||+||+.||.............   ...... ...+   .....++
T Consensus       183 ~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~---~~~~~~-~~~~---~~~~~~~  255 (295)
T 2clq_A          183 FTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKV---GMFKVH-PEIP---ESMSAEA  255 (295)
T ss_dssp             CCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHH---HHHCCC-CCCC---TTSCHHH
T ss_pred             cCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhh---cccccc-cccc---ccCCHHH
Confidence            2244557788877543  37889999999999999999999986432111000000   000000 0011   1123467


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||+.||++|||++|++++
T Consensus       256 ~~li~~~l~~dp~~Rps~~~ll~~  279 (295)
T 2clq_A          256 KAFILKCFEPDPDKRACANDLLVD  279 (295)
T ss_dssp             HHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHHccCChhhCCCHHHHhcC
Confidence            789999999999999999999864

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1.4e-36  Score=331.77  Aligned_cols=247  Identities=17%  Similarity=0.145  Sum_probs=190.5

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchh------------------HHHHHHHHHHhhccCCCCceeEEEEEe
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATR------------------IKIVSEFITRIGTVRHKNLIRLLGFCY  673 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~------------------~~~~~~e~~~l~~l~H~niv~l~~~~~  673 (872)
                      ..+.+|+|+||.||+|.. +|+.||||++......                  .+.+.+|++++++++||||+++++++.
T Consensus        35 ~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~  113 (348)
T 2pml_X           35 IIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIIT  113 (348)
T ss_dssp             EEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEE
T ss_pred             EEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEe
Confidence            889999999999999999 9999999999753221                  178899999999999999999999999


Q ss_pred             cCCeeEEEEcccCCCChHHH------hhC----CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCC
Q 002875          674 NRHQAYLLYDYLPNGNLSEK------IRT----KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       674 ~~~~~~lv~ey~~~g~L~~~------l~~----~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      +.+..++||||+++|+|.++      +..    ..++.....++.|++.||+|||+ .   +|+||||||+||+++.++.
T Consensus       114 ~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~~~~~~  190 (348)
T 2pml_X          114 NYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILMDKNGR  190 (348)
T ss_dssp             SSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEECTTSC
T ss_pred             eCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEEcCCCc
Confidence            99999999999999999998      643    35788999999999999999998 7   9999999999999999999


Q ss_pred             eeEccccccccccccCCCCcccccccCchhhhccc-CCcc-cccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccc
Q 002875          743 PHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAM-KEEM-YMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEM  820 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~-~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~  820 (872)
                      +||+|||++............+...|.+||..... .++. ++||||+||++|||+||..||.......... .......
T Consensus       191 ~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~i~~~~  269 (348)
T 2pml_X          191 VKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELF-NNIRTKN  269 (348)
T ss_dssp             EEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHH-HHHTSCC
T ss_pred             EEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHH-HHHhccC
Confidence            99999999876433322223345567788887665 5555 8999999999999999999987543311000 0000000


Q ss_pred             cc-c---------ccc-CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 YN-E---------NEV-GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ~~-~---------~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .. +         ... ............+.+++.+||+.||++|||++|++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          270 IEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             CCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             cCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            00 0         000 0000001233567899999999999999999999874

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=3.1e-36  Score=329.29  Aligned_cols=251  Identities=21%  Similarity=0.317  Sum_probs=188.5

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEec-------
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYN-------  674 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~-------  674 (872)
                      ..|.  ..+.||+|+||.||+|.. .+|+.||||++.....   ....+.+|++++++++|||||++++++.+       
T Consensus        17 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (351)
T 3mi9_A           17 SKYE--KLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   94 (351)
T ss_dssp             GGEE--EEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred             ccee--EEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence            4455  889999999999999986 6899999999864322   24567789999999999999999999986       


Q ss_pred             -CCeeEEEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          675 -RHQAYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       675 -~~~~~lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                       .+..|+||||+++ +|.+.+..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        95 ~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  170 (351)
T 3mi9_A           95 CKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGL  170 (351)
T ss_dssp             --CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchh
Confidence             3468999999985 78777765   458899999999999999999999   999999999999999999999999999


Q ss_pred             cccccccCC------CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC-------------
Q 002875          751 KYLTQLADG------SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN-------------  810 (872)
Q Consensus       751 ~~~~~~~~~------~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~-------------  810 (872)
                      ++.......      ....++.+|.+||...+ ..++.++||||+||++|||+||+.||.+......             
T Consensus       171 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~  250 (351)
T 3mi9_A          171 ARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITP  250 (351)
T ss_dssp             CEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCT
T ss_pred             cccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCh
Confidence            875432111      11224566788887754 4578999999999999999999999875331100             


Q ss_pred             --ccccccccccccccc--cCCCCchHHH------HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          811 --KPIDGLLGEMYNENE--VGSSSSLQDE------IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       811 --~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                        +...... +.+....  ........+.      ...+.+++.+||+.||++|||++|++++
T Consensus       251 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          251 EVWPNVDNY-ELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             TTSTTGGGC-GGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhccccccc-hhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence              0000000 0000000  0001111111      2457899999999999999999999875

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=3.9e-36  Score=321.52  Aligned_cols=246  Identities=17%  Similarity=0.260  Sum_probs=185.6

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEec---------
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN---------  674 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~---------  674 (872)
                      .+.|.  ..+.+|+|+||.||+|.. .+|+.||||++.......+.+.+|+.++++++||||++++++|.+         
T Consensus         5 ~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            5 ASDFE--EIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             cccch--hhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            34565  889999999999999985 589999999997665567788999999999999999999999864         


Q ss_pred             ----CCeeEEEEcccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          675 ----RHQAYLLYDYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       675 ----~~~~~lv~ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                          .+..|+||||+++|+|.+++...   .++.+.+.++.|+++||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~d  159 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGD  159 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECC
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEee
Confidence                35789999999999999999743   36788889999999999999999   999999999999999999999999


Q ss_pred             ccccccccccC----------------CCCcccccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCC
Q 002875          748 FGFKYLTQLAD----------------GSFPAKIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN  810 (872)
Q Consensus       748 fg~~~~~~~~~----------------~~~~~~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~  810 (872)
                      ||++.......                .....+...|.+||...+. .++.++||||+||++|||+|   |+....... 
T Consensus       160 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~-  235 (303)
T 1zy4_A          160 FGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERV-  235 (303)
T ss_dssp             CCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHH-
T ss_pred             CcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHH-
Confidence            99986543210                0112244557788887643 68889999999999999998   443211100 


Q ss_pred             ccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          811 KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                          .....+..................+.+++.+||+.||++|||++|++++
T Consensus       236 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          236 ----NILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS  284 (303)
T ss_dssp             ----HHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             ----HHHHhccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence                0000000000000011112223457789999999999999999999875

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=4.4e-36  Score=353.15  Aligned_cols=240  Identities=15%  Similarity=0.114  Sum_probs=193.4

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcc
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ...+.||+|+||.||+|.. .+|+.||||+++...    ...+.+..|..++..+ +||||+++++++++.+..|+||||
T Consensus       344 ~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~  423 (674)
T 3pfq_A          344 NFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEY  423 (674)
T ss_dssp             EEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEEC
T ss_pred             EEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeC
Confidence            3888999999999999985 578899999997532    2345677788888877 799999999999999999999999


Q ss_pred             cCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CC
Q 002875          685 LPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GS  760 (872)
Q Consensus       685 ~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~  760 (872)
                      +++|+|.++++.  ..++.+...|+.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++......  ..
T Consensus       424 ~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~  500 (674)
T 3pfq_A          424 VNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTK  500 (674)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBC
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccc
Confidence            999999999975  568888999999999999999999   99999999999999999999999999997532221  12


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...++.+|++||++....++.++|||||||++|||+||+.||.+....      .....+.... ...+.   ....++.
T Consensus       501 ~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~------~~~~~i~~~~-~~~p~---~~s~~~~  570 (674)
T 3pfq_A          501 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED------ELFQSIMEHN-VAYPK---SMSKEAV  570 (674)
T ss_dssp             CCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHSSC-CCCCT---TSCHHHH
T ss_pred             cccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH------HHHHHHHhCC-CCCCc---cCCHHHH
Confidence            233667789999998888999999999999999999999999754321      1111111111 11111   2235678


Q ss_pred             HHHHHcccCCCCCCCCH-----HHHHHH
Q 002875          841 DVALLCTRSTPSDRPSM-----EEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~-----~~v~~~  863 (872)
                      +++.+||+.||++||++     +|+.++
T Consensus       571 ~li~~lL~~dP~~R~~~~~~~~~ei~~h  598 (674)
T 3pfq_A          571 AICKGLMTKHPGKRLGCGPEGERDIKEH  598 (674)
T ss_dssp             HHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred             HHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence            89999999999999997     777643

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=2.7e-36  Score=322.56  Aligned_cols=246  Identities=17%  Similarity=0.202  Sum_probs=188.2

Q ss_pred             hhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      +.|.  ..+.||+|+||.||+|... +|+.||+|.+.... ...+.+.+|++++++++||||+++++++.+++..++|||
T Consensus        19 ~~y~--i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   96 (302)
T 2j7t_A           19 EVWE--IVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE   96 (302)
T ss_dssp             GTEE--EEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred             ccee--ecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence            3455  8889999999999999974 68999999987543 345678899999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc--C
Q 002875          684 YLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA--D  758 (872)
Q Consensus       684 y~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~--~  758 (872)
                      |+++|+|.+++..   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++......  .
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  173 (302)
T 2j7t_A           97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQK  173 (302)
T ss_dssp             CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC
T ss_pred             eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCccccccccc
Confidence            9999999998853   468899999999999999999999   9999999999999999999999999987532111  1


Q ss_pred             CCCcccccccCchhhh-----cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          759 GSFPAKIAWTESGEFY-----NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~-----~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                      .....+...|.+||..     ....++.++|||||||++|||+||+.|+.......      ......... ........
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~-~~~~~~~~  246 (302)
T 2j7t_A          174 RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR------VLLKIAKSD-PPTLLTPS  246 (302)
T ss_dssp             -----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHHSC-CCCCSSGG
T ss_pred             cccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH------HHHHHhccC-CcccCCcc
Confidence            1112244557778876     34567889999999999999999999986433111      000111010 00001111


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .....+.+++.+||+.||++|||++|++++
T Consensus       247 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  276 (302)
T 2j7t_A          247 KWSVEFRDFLKIALDKNPETRPSAAQLLEH  276 (302)
T ss_dssp             GSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred             ccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            223467789999999999999999999864

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=7.7e-36  Score=316.35  Aligned_cols=249  Identities=16%  Similarity=0.171  Sum_probs=193.8

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeecC-CCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCee
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~  678 (872)
                      .+.+.|.  ..+.||+|+||.||+|... +|+.||||++....   ...+.+.+|++++++++||||+++++++.+.+..
T Consensus        19 ~~~~~y~--i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   96 (287)
T 2wei_A           19 TFAERYN--IVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF   96 (287)
T ss_dssp             HHHHHEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             HHhhcce--eeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeE
Confidence            3445566  8899999999999999864 79999999996532   2466788999999999999999999999999999


Q ss_pred             EEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC---CCeeEcccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN---MEPHLAEFGFKYL  753 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~---~~~ki~dfg~~~~  753 (872)
                      ++||||+++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.+   +.+||+|||++..
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A           97 YIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             EEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred             EEEEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence            999999999999998854  568889999999999999999999   99999999999999754   4699999999875


Q ss_pred             ccccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCch
Q 002875          754 TQLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSL  832 (872)
Q Consensus       754 ~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (872)
                      ....... ...+...|.+||...+ .++.++||||+||++|||+||+.||.......      ....+.........+..
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~~~  246 (287)
T 2wei_A          174 FQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD------ILKRVETGKYAFDLPQW  246 (287)
T ss_dssp             BCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCCCCCCSGGG
T ss_pred             ecCCCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH------HHHHHHcCCCCCCchhh
Confidence            4432221 1224556778887765 47889999999999999999999987533111      00111111000001111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          833 QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       833 ~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .....++.+++.+||+.||++|||++|++++
T Consensus       247 ~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          247 RTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             hhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence            2233567889999999999999999999874

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=337.47  Aligned_cols=246  Identities=19%  Similarity=0.239  Sum_probs=174.3

Q ss_pred             hhhccCCCCCceeeeecC---CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEe--cCCeeEEEEcccCC
Q 002875          613 CEEAARPQSAAGCKAVLP---TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCY--NRHQAYLLYDYLPN  687 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~---~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~--~~~~~~lv~ey~~~  687 (872)
                      .++||+|+||.||+|...   +++.||||++..... .+.+.+|+.++++++|||||++++++.  .....|+||||++ 
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-  103 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-  103 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-
Confidence            457999999999999854   688999999975432 345778999999999999999999995  4678999999997 


Q ss_pred             CChHHHhhC-----------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee----CCCCCeeEccccccc
Q 002875          688 GNLSEKIRT-----------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF----DENMEPHLAEFGFKY  752 (872)
Q Consensus       688 g~L~~~l~~-----------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill----~~~~~~ki~dfg~~~  752 (872)
                      |+|.+++..           ..++...+.|+.|++.||+|||+.   +|+||||||+|||+    +.++.+||+|||+++
T Consensus       104 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  180 (405)
T 3rgf_A          104 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFAR  180 (405)
T ss_dssp             EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC
T ss_pred             CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEEECCCce
Confidence            588887752           267888899999999999999999   99999999999999    677899999999997


Q ss_pred             cccccC-----CCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc--cc-cccccccc--
Q 002875          753 LTQLAD-----GSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK--PI-DGLLGEMY--  821 (872)
Q Consensus       753 ~~~~~~-----~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~--~~-~~~~~~~~--  821 (872)
                      ......     .....++.+|.+||+..+ ..++.++||||+||++|||+||+.||.........  .. ...+..+.  
T Consensus       181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~  260 (405)
T 3rgf_A          181 LFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNV  260 (405)
T ss_dssp             ----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHH
T ss_pred             ecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHh
Confidence            654321     111235666888888765 45889999999999999999999999744321100  00 00000000  


Q ss_pred             -----c--------------------ccccCCCCchH-------HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 -----N--------------------ENEVGSSSSLQ-------DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 -----~--------------------~~~~~~~~~~~-------~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                           .                    ...........       .....+.+++.+||+.||++|||++|++++
T Consensus       261 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~h  334 (405)
T 3rgf_A          261 MGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD  334 (405)
T ss_dssp             HCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                 0                    00000000000       002457899999999999999999999875

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2.8e-36  Score=326.84  Aligned_cols=250  Identities=14%  Similarity=0.174  Sum_probs=169.2

Q ss_pred             HHhhcCcchh-hhccCCCCCceeeeecC-CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEec----CCe
Q 002875          604 VLRSFNSTEC-EEAARPQSAAGCKAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN----RHQ  677 (872)
Q Consensus       604 ~~~~~~~~~~-~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~  677 (872)
                      +.+.|.  .. +.||+|+||.||+|... +|+.||||++.......   .+....++.++||||+++++++..    ...
T Consensus        26 ~~~~y~--i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  100 (336)
T 3fhr_A           26 VTDDYQ--LSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKAR---QEVDHHWQASGGPHIVCILDVYENMHHGKRC  100 (336)
T ss_dssp             GGGTEE--EEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHH---HHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             ccceeE--ecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHH---HHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence            444555  53 46999999999999864 79999999997543222   223334566799999999999975    456


Q ss_pred             eEEEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLAEFGF  750 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~dfg~  750 (872)
                      .++|||||++|+|.+++...    .++.+...++.|++.||+|||+.   +|+||||||+||+++.   ++.+||+|||+
T Consensus       101 ~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~  177 (336)
T 3fhr_A          101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGF  177 (336)
T ss_dssp             EEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred             EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecccc
Confidence            89999999999999999763    57889999999999999999999   9999999999999976   45599999999


Q ss_pred             cccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          751 KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      ++...........++..|.+||......++.++||||+||++|||+||..||...........  ....+.........+
T Consensus       178 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--~~~~~~~~~~~~~~~  255 (336)
T 3fhr_A          178 AKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG--MKRRIRLGQYGFPNP  255 (336)
T ss_dssp             CEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CCCTT
T ss_pred             ceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh--HHHhhhccccccCch
Confidence            976543333333455667888988777788899999999999999999999875432211000  000000000000011


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........+.+++.+||+.||++|||++|++++
T Consensus       256 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  288 (336)
T 3fhr_A          256 EWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH  288 (336)
T ss_dssp             TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             hhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            112233567789999999999999999999974

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=5e-36  Score=318.49  Aligned_cols=242  Identities=15%  Similarity=0.178  Sum_probs=176.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++.....   ..+.+.++...++.++||||+++++++.+++..++||||++ 
T Consensus        11 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-   89 (290)
T 3fme_A           11 PIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMD-   89 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-
T ss_pred             hHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-
Confidence            889999999999999985 6899999999975422   23445555666888999999999999999999999999997 


Q ss_pred             CChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          688 GNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       688 g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      |+|.+++..      ..++.....++.|++.||+|||+.+  +|+||||||+||+++.++.+||+|||+++........ 
T Consensus        90 ~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  167 (290)
T 3fme_A           90 TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKD  167 (290)
T ss_dssp             EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC-------------
T ss_pred             cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCccccccccccc
Confidence            588887753      4688999999999999999999842  8999999999999999999999999998754332221 


Q ss_pred             CcccccccCchhhh----cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 FPAKIAWTESGEFY----NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 ~~~~~~~~~~~e~~----~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      ...++..|.+||..    ....++.++||||+||++|||+||+.||........     ..............  .....
T Consensus       168 ~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~  240 (290)
T 3fme_A          168 IDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ-----QLKQVVEEPSPQLP--ADKFS  240 (290)
T ss_dssp             --CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH-----HHHHHHHSCCCCCC--TTTSC
T ss_pred             ccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHH-----HHHHHhccCCCCcc--cccCC
Confidence            22345567788875    455678899999999999999999999864321110     01111111101000  01123


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .++.+++.+||+.||++|||++|++++
T Consensus       241 ~~~~~li~~~l~~~p~~Rpt~~e~l~h  267 (290)
T 3fme_A          241 AEFVDFTSQCLKKNSKERPTYPELMQH  267 (290)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence            467889999999999999999999863

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=2.7e-36  Score=320.77  Aligned_cols=248  Identities=19%  Similarity=0.238  Sum_probs=185.2

Q ss_pred             chhhhccCCCCCceeeeec--CCCc--EEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          611 TECEEAARPQSAAGCKAVL--PTGI--TVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~--~~g~--~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ...+.||+|+||.||+|+.  .+++  .||||+++..    ....+.+.+|++++++++||||+++++++.+++ .++||
T Consensus        21 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~v~   99 (291)
T 1u46_A           21 RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MKMVT   99 (291)
T ss_dssp             EEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CEEEE
T ss_pred             eeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ceeeE
Confidence            3889999999999999984  3333  6999998753    234567889999999999999999999998765 89999


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+++|+|.+++..   ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~  176 (291)
T 1u46_A          100 ELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDD  176 (291)
T ss_dssp             ECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CC
T ss_pred             ecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccccccccc
Confidence            99999999999864   368889999999999999999999   999999999999999999999999999876533221


Q ss_pred             -----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          760 -----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       760 -----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                           ....+...|.+||......++.++||||+||++|||+| |..||.......      ....+......  .+...
T Consensus       177 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~------~~~~~~~~~~~--~~~~~  248 (291)
T 1u46_A          177 HYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ------ILHKIDKEGER--LPRPE  248 (291)
T ss_dssp             EEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHHHHHTSCCC--CCCCT
T ss_pred             chhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH------HHHHHHccCCC--CCCCc
Confidence                 11123335778888877778889999999999999999 888876432111      01111110000  01111


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      ....++.+++.+||+.||++|||++|+++.|+.+.+.
T Consensus       249 ~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          249 DCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence            2234678899999999999999999999999987654

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.3e-36  Score=323.83  Aligned_cols=243  Identities=15%  Similarity=0.181  Sum_probs=178.1

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccC-CCCceeEEEEEe--------cCCee
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVR-HKNLIRLLGFCY--------NRHQA  678 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~-H~niv~l~~~~~--------~~~~~  678 (872)
                      |...+.||+|+||.||+|.. .+|+.||||++.... ...+.+.+|+.+++++. |||||++++++.        .....
T Consensus        30 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~  109 (337)
T 3ll6_A           30 LRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEF  109 (337)
T ss_dssp             EEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEE
T ss_pred             EEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceE
Confidence            44889999999999999985 689999999986543 34567889999999996 999999999994        34468


Q ss_pred             EEEEcccCCCChHHHhhC-----CCCHHHHHHHHHHHHHHHHHHhhCCCCC--cccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT-----KRDWAAKYKIVLGVARGLCFLHHDCYPA--IPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~-----~~~~~~~~~i~~~i~~gl~~lH~~~~~~--i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      ++||||+. |+|.+++..     ..++.+.+.++.|++.||+|||+.   +  |+||||||+||+++.++.+||+|||++
T Consensus       110 ~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~  185 (337)
T 3ll6_A          110 LLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDFGSA  185 (337)
T ss_dssp             EEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCCTTC
T ss_pred             EEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecCccc
Confidence            99999996 799998853     468899999999999999999998   7  999999999999999999999999998


Q ss_pred             ccccccCCC--------------CcccccccCchhhh---cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc
Q 002875          752 YLTQLADGS--------------FPAKIAWTESGEFY---NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID  814 (872)
Q Consensus       752 ~~~~~~~~~--------------~~~~~~~~~~~e~~---~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~  814 (872)
                      +........              ...++..|.+||..   ....++.++|||||||++|||+||+.||........    
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~----  261 (337)
T 3ll6_A          186 TTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRI----  261 (337)
T ss_dssp             BCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------------
T ss_pred             eeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHh----
Confidence            754322110              11244557788876   455678899999999999999999999875432110    


Q ss_pred             ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          815 GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                        ........ .  ...   ....+.+++.+||+.||++|||++|++++|+.+.
T Consensus       262 --~~~~~~~~-~--~~~---~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~  307 (337)
T 3ll6_A          262 --VNGKYSIP-P--HDT---QYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIA  307 (337)
T ss_dssp             ------CCCC-T--TCC---SSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --hcCcccCC-c--ccc---cchHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence              11111100 0  000   1123668889999999999999999999998663

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.6e-34  Score=326.37  Aligned_cols=345  Identities=23%  Similarity=0.340  Sum_probs=243.7

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ++.++.|++++|.+..+ | .+..+++|++|+|++|.+.+..+  |..+++|++|++++|.+.+..+  +.++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            45788899988888754 4 47788889999999998886544  8888899999999888886544  88888999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      +++|.+.+..+  |.++++|++|++++|.+.+. + .++.+++|++|+++. ...+..  .+.++++|+.|++++|.+.+
T Consensus       119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCch--hhccCCCCCEEECcCCcCCC
Confidence            99888876533  88888999999988888653 3 478888888888863 333222  27778888888888888764


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      .  ..+..+++|++|++++|.+.+..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|.+.+..+  +..
T Consensus       192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            3  346777888888888888876554  66778888888888887753  357777888888888888776544  777


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEE
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR  336 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~  336 (872)
                      +++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+                          +..+++|+.|+
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------------------------~~~l~~L~~L~  315 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--------------------------ISNLKNLTYLT  315 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--------------------------GGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--------------------------hcCCCCCCEEE
Confidence            7888888888887775443  6677777777777777653221                          34555666666


Q ss_pred             cCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccC
Q 002875          337 LEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT  416 (872)
Q Consensus       337 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~  416 (872)
                      +++|++++..|  +..+++|+.|++++|.+.+.  ..+..+++|++|++++|+ +.+..|  +..+++|+.|++++|.++
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ-ISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC-CCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCc-cCccch--hhcCCCCCEEeccCCccc
Confidence            66666655444  45566666666666666543  345555666666666663 233333  455666666777766665


Q ss_pred             C
Q 002875          417 G  417 (872)
Q Consensus       417 ~  417 (872)
                      +
T Consensus       389 ~  389 (466)
T 1o6v_A          389 N  389 (466)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=6.4e-36  Score=333.08  Aligned_cols=248  Identities=19%  Similarity=0.186  Sum_probs=191.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC--------CCCceeEEEEEe----cCCee
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR--------HKNLIRLLGFCY----NRHQA  678 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~--------H~niv~l~~~~~----~~~~~  678 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++.......+.+.+|+.++++++        |||||++++++.    +....
T Consensus        41 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~  120 (397)
T 1wak_A           41 VIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHI  120 (397)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEE
T ss_pred             EEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceE
Confidence            889999999999999984 67899999999866666778889999999886        788999999998    55689


Q ss_pred             EEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-------------
Q 002875          679 YLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-------------  741 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-------------  741 (872)
                      |+||||+ +|++.+++..    ..++.+...++.|++.||+|||+.+  +|+||||||+|||++.++             
T Consensus       121 ~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~~~~~~  197 (397)
T 1wak_A          121 CMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAEATEW  197 (397)
T ss_dssp             EEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHHHHC--
T ss_pred             EEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhhhhHHH
Confidence            9999999 5566666643    3688999999999999999999854  899999999999999775             


Q ss_pred             ------------------------------------CeeEccccccccccccCCCCcccccccCchhhhcccCCcccccc
Q 002875          742 ------------------------------------EPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDV  785 (872)
Q Consensus       742 ------------------------------------~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv  785 (872)
                                                          .+||+|||+++....... ...++.+|++||+..+..++.++||
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~-~~~gt~~y~aPE~~~~~~~~~~~Di  276 (397)
T 1wak_A          198 QRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFT-EDIQTRQYRSLEVLIGSGYNTPADI  276 (397)
T ss_dssp             -------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSC-SCCSCGGGCCHHHHHTSCCCTHHHH
T ss_pred             hhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCc-cCCCCCcccCChhhcCCCCCcHHHH
Confidence                                                799999999976543322 2235667888998888888999999


Q ss_pred             hhHHHHHHHHHcCCCCCCCCCCCCCcccc-------cccc--------------cccccc-------cc----------C
Q 002875          786 YGFGEIILEILTNGRLTNAGSSLQNKPID-------GLLG--------------EMYNEN-------EV----------G  827 (872)
Q Consensus       786 ~S~Gvil~el~tg~~p~~~~~~~~~~~~~-------~~~~--------------~~~~~~-------~~----------~  827 (872)
                      ||+||++|||+||+.||............       ....              ..+...       ..          .
T Consensus       277 wslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (397)
T 1wak_A          277 WSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVE  356 (397)
T ss_dssp             HHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhh
Confidence            99999999999999999754322110000       0000              000000       00          0


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ......+....+.+++.+||+.||++|||++|++++
T Consensus       357 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  392 (397)
T 1wak_A          357 KYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH  392 (397)
T ss_dssp             TSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred             hcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence            001124456678899999999999999999999875

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.8e-36  Score=332.27  Aligned_cols=246  Identities=16%  Similarity=0.222  Sum_probs=181.9

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEec---------------
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN---------------  674 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~---------------  674 (872)
                      ...+.||+|+||.||+|.. .+|+.||||++.....   ...+|++++++++|||||++++++..               
T Consensus        10 ~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~---~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~   86 (383)
T 3eb0_A           10 SLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR---YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDH   86 (383)
T ss_dssp             EEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHTTCCCTTBCCEEEEEEEC--------------
T ss_pred             EEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc---hHHHHHHHHHHcCCCCccchhheeeecCccccccccccccc
Confidence            3889999999999999985 7899999999865432   23468999999999999999999854               


Q ss_pred             -----------------------CCeeEEEEcccCCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 002875          675 -----------------------RHQAYLLYDYLPNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDCYPAI  725 (872)
Q Consensus       675 -----------------------~~~~~lv~ey~~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i  725 (872)
                                             ....++||||++ |+|.+.+..      ..++.....++.|+++||+|||+.   +|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---gi  162 (383)
T 3eb0_A           87 NKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL---GI  162 (383)
T ss_dssp             -----------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TE
T ss_pred             ccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---cC
Confidence                                   234889999998 588777652      467888999999999999999999   99


Q ss_pred             ccCCCCCCCeeeC-CCCCeeEccccccccccccCCC-CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCC
Q 002875          726 PHGDLKASNIVFD-ENMEPHLAEFGFKYLTQLADGS-FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLT  802 (872)
Q Consensus       726 ~Hrdlk~~Nill~-~~~~~ki~dfg~~~~~~~~~~~-~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~  802 (872)
                      +||||||+||+++ .++.+||+|||+++........ ...++.+|.+||...+ ..++.++||||+||++|||+||+.||
T Consensus       163 ~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  242 (383)
T 3eb0_A          163 CHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLF  242 (383)
T ss_dssp             ECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCC
Confidence            9999999999998 6889999999999765333222 2234566788887655 45889999999999999999999998


Q ss_pred             CCCCCCCCcccc-ccc-----------cccccccccC--CCCchH-----HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          803 NAGSSLQNKPID-GLL-----------GEMYNENEVG--SSSSLQ-----DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       803 ~~~~~~~~~~~~-~~~-----------~~~~~~~~~~--~~~~~~-----~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.......... ...           ...+.....+  ....+.     ....++.+++.+||+.||++|||++|++++
T Consensus       243 ~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (383)
T 3eb0_A          243 SGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAH  322 (383)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             CCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            754321100000 000           0000000000  000111     123457899999999999999999999854

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=2.9e-36  Score=329.90  Aligned_cols=251  Identities=20%  Similarity=0.265  Sum_probs=175.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecC------
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------  675 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------  675 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++...   ....+.+.+|++++++++|||||++++++...      
T Consensus        29 ~~y~--~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           29 ERYQ--NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             TTEE--EEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CceE--EeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            4455  889999999999999984 67999999999653   22356778999999999999999999999754      


Q ss_pred             CeeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          676 HQAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ...|+||||+ +++|.+++.. ..++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~~~  182 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHT  182 (367)
T ss_dssp             CCCEEEEECC-CEECC-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC-------
T ss_pred             CeEEEEeccc-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeeccccccc
Confidence            5689999999 6899998875 468889999999999999999999   9999999999999999999999999999764


Q ss_pred             cccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-c--------ccccc-----
Q 002875          755 QLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-D--------GLLGE-----  819 (872)
Q Consensus       755 ~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~--------~~~~~-----  819 (872)
                      ..... ...++.+|.+||...+ ..++.++||||+||++|||+||+.||.+......... .        .....     
T Consensus       183 ~~~~~-~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~  261 (367)
T 2fst_X          183 ADEMT-GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSES  261 (367)
T ss_dssp             ---------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHH
T ss_pred             cccCC-CcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHH
Confidence            43221 2235567888888765 6788999999999999999999999875432110000 0        00000     


Q ss_pred             ---cccccccCCCCchH----HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          820 ---MYNENEVGSSSSLQ----DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       820 ---~~~~~~~~~~~~~~----~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                         ..............    .....+.+++.+||+.||++|||++|++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          262 ARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             HHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence               00000000000111    123467899999999999999999999875

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=5e-36  Score=329.59  Aligned_cols=251  Identities=17%  Similarity=0.230  Sum_probs=190.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCee---
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA---  678 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~---  678 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++....   ...+.+.+|+.++++++|||||++++++...+..   
T Consensus        42 ~~y~--~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           42 KTYV--SPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  119 (371)
T ss_dssp             TTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred             ccEE--EEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence            3455  788999999999999985 579999999997532   2356778999999999999999999999876654   


Q ss_pred             ---EEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          679 ---YLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       679 ---~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                         |+||||++ |+|.+++....++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             eeEEEEEcccc-ccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence               99999997 699999988889999999999999999999999   99999999999999999999999999997654


Q ss_pred             ccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc---------cccc-------
Q 002875          756 LADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID---------GLLG-------  818 (872)
Q Consensus       756 ~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~---------~~~~-------  818 (872)
                      ..... ..++.+|.+||.... ..++.++||||+||++|||+||+.||.+..........         ....       
T Consensus       196 ~~~~~-~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  274 (371)
T 4exu_A          196 AEMTG-YVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAA  274 (371)
T ss_dssp             ----C-TTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHH
T ss_pred             cCcCC-cccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhh
Confidence            33222 234556788887765 67889999999999999999999998754311100000         0000       


Q ss_pred             -ccccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 -EMYNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 -~~~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ..............    ......+.+++.+||+.||++|||++|++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          275 KSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             HHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             hhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence             00000000000111    1124568899999999999999999999875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=6.6e-36  Score=336.79  Aligned_cols=251  Identities=12%  Similarity=0.058  Sum_probs=193.0

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCC-CCceeEEEEEecCCeeEEEEcc
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRH-KNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      .|.  ..+.||+|+||.||+|+. .+|+.||||++..... .+.+.+|+++++.++| ++|+.+..++...+..++||||
T Consensus         8 ~y~--i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~   84 (483)
T 3sv0_A            8 KFR--LGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDL   84 (483)
T ss_dssp             TEE--CCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             cEE--EEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEEC
Confidence            455  889999999999999985 7899999998865432 3346788999999987 5566666677778899999999


Q ss_pred             cCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee---CCCCCeeEccccccccccccC
Q 002875          685 LPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF---DENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       685 ~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill---~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      + +|+|.+++..   ..++.+.+.|+.||+.||+|||+.   +|+||||||+|||+   +.++.+||+|||+++......
T Consensus        85 ~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~  160 (483)
T 3sv0_A           85 L-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTS  160 (483)
T ss_dssp             C-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             C-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCc
Confidence            9 9999999863   568999999999999999999999   99999999999999   588999999999997654322


Q ss_pred             CC---------CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCC
Q 002875          759 GS---------FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       759 ~~---------~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      ..         ...++..|++||...+..++.++|||||||++|||+||+.||...........   +..+.........
T Consensus       161 ~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~---~~~i~~~~~~~~~  237 (483)
T 3sv0_A          161 THQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQK---YEKISEKKVATSI  237 (483)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHH---HHHHHHHHHHSCH
T ss_pred             cccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHH---HHHHhhccccccH
Confidence            11         22355668888998888899999999999999999999999875432111100   0111000000000


Q ss_pred             -CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          830 -SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       830 -~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                       ........++.+++..||+.||++||+++++++.|+.+
T Consensus       238 ~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l  276 (483)
T 3sv0_A          238 EALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL  276 (483)
T ss_dssp             HHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence             00011235688999999999999999999999998765

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.1e-35  Score=329.13  Aligned_cols=252  Identities=17%  Similarity=0.191  Sum_probs=184.5

Q ss_pred             cchhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCC------eeEEEEc
Q 002875          610 STECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH------QAYLLYD  683 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~------~~~lv~e  683 (872)
                      |...+.||+|+||.||+|....+..||||++.....   ...+|++++++++|||||+++++|...+      ..++|||
T Consensus        42 Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~---~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e  118 (394)
T 4e7w_A           42 YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR---FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLE  118 (394)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT---SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEE
T ss_pred             EEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc---hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEee
Confidence            448899999999999999987777799999864322   2246899999999999999999996533      3789999


Q ss_pred             ccCCCChHHHh-----hCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-CCCCeeEcccccccccccc
Q 002875          684 YLPNGNLSEKI-----RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       684 y~~~g~L~~~l-----~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-~~~~~ki~dfg~~~~~~~~  757 (872)
                      |++++.+....     ....++.....++.|+++||+|||+.   +|+||||||+||+++ .++.+||+|||+++.....
T Consensus       119 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~  195 (394)
T 4e7w_A          119 YVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG  195 (394)
T ss_dssp             CCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             ccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCC
Confidence            99875443332     23568888899999999999999999   999999999999999 7899999999999765332


Q ss_pred             CCC-CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-cc------------ccccccc
Q 002875          758 DGS-FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DG------------LLGEMYN  822 (872)
Q Consensus       758 ~~~-~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~------------~~~~~~~  822 (872)
                      ... ...++.+|.+||...+ ..++.++||||+||++|||+||+.||.+......... ..            .......
T Consensus       196 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~  275 (394)
T 4e7w_A          196 EPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYME  275 (394)
T ss_dssp             CCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSS
T ss_pred             CCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhh
Confidence            222 2235566888887754 4588999999999999999999999975432110000 00            0000000


Q ss_pred             ccccC-CCCchH-----HHHHHHHHHHHHcccCCCCCCCCHHHHHHH--Hccc
Q 002875          823 ENEVG-SSSSLQ-----DEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGL  867 (872)
Q Consensus       823 ~~~~~-~~~~~~-----~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~  867 (872)
                      ..... ......     ....++.+++.+||+.||++|||+.|++++  ++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  328 (394)
T 4e7w_A          276 HKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDEL  328 (394)
T ss_dssp             SCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTT
T ss_pred             hccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhh
Confidence            00000 000011     123568899999999999999999999976  4444

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=321.74  Aligned_cols=244  Identities=18%  Similarity=0.211  Sum_probs=187.5

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEec------CCe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYN------RHQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~------~~~  677 (872)
                      ..|.  ..+.||+|+||.||+|.. .+|+.||||++.......+.+.+|+.+++++ +||||+++++++..      .+.
T Consensus        24 ~~y~--~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~  101 (326)
T 2x7f_A           24 GIFE--LVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQ  101 (326)
T ss_dssp             TTEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCE
T ss_pred             CcEE--EEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccce
Confidence            3455  889999999999999986 6899999999986666667888999999998 79999999999976      467


Q ss_pred             eEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      .++||||+++|+|.+++..    ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++..
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~  178 (326)
T 2x7f_A          102 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  178 (326)
T ss_dssp             EEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTTTC-
T ss_pred             EEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcCcee
Confidence            8999999999999999974    357888899999999999999999   999999999999999999999999999875


Q ss_pred             ccccCC--CCcccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccc-cc
Q 002875          754 TQLADG--SFPAKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNE-NE  825 (872)
Q Consensus       754 ~~~~~~--~~~~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-~~  825 (872)
                      ......  ....+...|.+||...     ...++.++|||||||++|||+||+.||........      ....... .+
T Consensus       179 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~~~~~  252 (326)
T 2x7f_A          179 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA------LFLIPRNPAP  252 (326)
T ss_dssp             ------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHSCCC
T ss_pred             cCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHH------HHHhhcCccc
Confidence            432211  1222455677888775     45678889999999999999999999864331110      0000000 00


Q ss_pred             cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          826 VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       826 ~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .....   .....+.+++.+||+.||++|||++|++++
T Consensus       253 ~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          253 RLKSK---KWSKKFQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             CCSCS---CSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             cCCcc---ccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            00011   112457788999999999999999999874

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=3.4e-36  Score=330.52  Aligned_cols=249  Identities=18%  Similarity=0.226  Sum_probs=183.0

Q ss_pred             chhhhccCCCCCceeeeecCCCcEEEEEEeeccch------------hHHHHHHHHHHhhccCCCCceeEEEEEec----
Q 002875          611 TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT------------RIKIVSEFITRIGTVRHKNLIRLLGFCYN----  674 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~------------~~~~~~~e~~~l~~l~H~niv~l~~~~~~----  674 (872)
                      ...+.||+|+||.||+|...+|+.||||++.....            ..+.+.+|++++++++|||||++++++..    
T Consensus        25 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  104 (362)
T 3pg1_A           25 TVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEP  104 (362)
T ss_dssp             EEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTT
T ss_pred             EEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCC
Confidence            38899999999999999998899999999854211            13678899999999999999999999853    


Q ss_pred             -CCeeEEEEcccCCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccc
Q 002875          675 -RHQAYLLYDYLPNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGF  750 (872)
Q Consensus       675 -~~~~~lv~ey~~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~  750 (872)
                       ....|+||||++ |+|.+++...   .++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus       105 ~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  180 (362)
T 3pg1_A          105 AMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLADNNDITICDFNL  180 (362)
T ss_dssp             TCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCTTC
T ss_pred             CcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcCCCCEEEEecCc
Confidence             346899999998 6888888653   58889999999999999999999   999999999999999999999999999


Q ss_pred             cccccccCC-CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc-ccc-----------
Q 002875          751 KYLTQLADG-SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI-DGL-----------  816 (872)
Q Consensus       751 ~~~~~~~~~-~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~-~~~-----------  816 (872)
                      ++....... ....++.+|.+||...+ ..++.++||||+||++|||+||+.||........... ...           
T Consensus       181 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  260 (362)
T 3pg1_A          181 AREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVM  260 (362)
T ss_dssp             ---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             ccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhh
Confidence            875432222 12235566788887765 6688899999999999999999999875431110000 000           


Q ss_pred             -----ccccccccccC-CCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 -----LGEMYNENEVG-SSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 -----~~~~~~~~~~~-~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                           ........... .....    ......+.+++.+||+.||++|||++|++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  317 (362)
T 3pg1_A          261 FSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH  317 (362)
T ss_dssp             TSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence                 00000000000 00000    1123457899999999999999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=325.48  Aligned_cols=323  Identities=18%  Similarity=0.136  Sum_probs=259.8

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      -+.++.+++.++. +|..+.  +++++|+|++|+|.+..+..|..+++|++|+|++|.+.+..|.+|.++++|++|+|++
T Consensus        13 ~~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            3578888888864 455554  5788999999998888888888999999999999988888888888899999999999


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      |.+....+..|.++++|++|+|++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            98887766778888999999999998888888888888888888888888777777778888888888888888887666


Q ss_pred             ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCC
Q 002875          180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS  259 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  259 (872)
                      ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.++.......+|+.|++++|+++...+..+..+++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            67788888888888888888777777888888888888887776666666556668888888888887655566777888


Q ss_pred             cceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCC
Q 002875          260 LEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLED  339 (872)
Q Consensus       260 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~  339 (872)
                      |+.|++++|.+++..+..+..+++|+.|++++|.+.+.                        .+..|.++++|+.|++++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV------------------------EPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE------------------------CTTTBTTCTTCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceE------------------------CHHHhcCcccCCEEECCC
Confidence            88888888888777777777777777777777776643                        334566788899999999


Q ss_pred             CccccccCccCCCCCCCcEEEcCCCcCCCC
Q 002875          340 NSFSGEIPLKFSQLPDINYIDLSRNGFTGG  369 (872)
Q Consensus       340 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  369 (872)
                      |++++..+..|..+++|+.|++++|.+...
T Consensus       306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          306 NQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             SCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            999887777888899999999999988743

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.1e-35  Score=326.47  Aligned_cols=254  Identities=17%  Similarity=0.207  Sum_probs=177.0

Q ss_pred             HHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCe-----
Q 002875          604 VLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ-----  677 (872)
Q Consensus       604 ~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~-----  677 (872)
                      ..+.|.  ..+.||+|+||.||+|.. .+|+.||||++...........+|++.+++++|||||+++++|...+.     
T Consensus        21 ~~~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~   98 (360)
T 3e3p_A           21 EMDRFQ--VERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRD   98 (360)
T ss_dssp             HHTTEE--EC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTC
T ss_pred             hccceE--EEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccc
Confidence            344565  889999999999999986 579999999997655555566777888899999999999999975432     


Q ss_pred             --eEEEEcccCCCChHHHhh----C--CCCHHHHHHHHHHHHHHHHHHh--hCCCCCcccCCCCCCCeeeCC-CCCeeEc
Q 002875          678 --AYLLYDYLPNGNLSEKIR----T--KRDWAAKYKIVLGVARGLCFLH--HDCYPAIPHGDLKASNIVFDE-NMEPHLA  746 (872)
Q Consensus       678 --~~lv~ey~~~g~L~~~l~----~--~~~~~~~~~i~~~i~~gl~~lH--~~~~~~i~Hrdlk~~Nill~~-~~~~ki~  746 (872)
                        .++||||+++ +|.+.+.    .  ..++.....++.|++.|++|||  +.   +|+||||||+||+++. ++.+||+
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~kl~  174 (360)
T 3e3p_A           99 IYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTLKLC  174 (360)
T ss_dssp             EEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEEEEC
T ss_pred             eeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcEEEe
Confidence              7899999986 5554433    2  3477888899999999999999  76   9999999999999996 8999999


Q ss_pred             cccccccccccCCC-CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-c--------
Q 002875          747 EFGFKYLTQLADGS-FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-G--------  815 (872)
Q Consensus       747 dfg~~~~~~~~~~~-~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~--------  815 (872)
                      |||+++........ ...++.+|.+||...+ ..++.++|||||||++|||+||+.||............ .        
T Consensus       175 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~  254 (360)
T 3e3p_A          175 DFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSRE  254 (360)
T ss_dssp             CCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHH
T ss_pred             eCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHH
Confidence            99999765433222 2234566788887754 45889999999999999999999998754321100000 0        


Q ss_pred             ccc---------ccccccccC----CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          816 LLG---------EMYNENEVG----SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       816 ~~~---------~~~~~~~~~----~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...         .........    ..........++.+++.+||+.||++|||++|++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          255 VLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             HHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            000         000000000    000001134578899999999999999999999875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=1.5e-35  Score=347.50  Aligned_cols=243  Identities=16%  Similarity=0.178  Sum_probs=189.9

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|...    .+..||||.++...  ...+.+.+|+.++++++|||||+++|++. ++..|+||||+
T Consensus       394 i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv~E~~  472 (656)
T 2j0j_A          394 LGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELC  472 (656)
T ss_dssp             EEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             EeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEEEEcC
Confidence            7788999999999999853    35689999987532  23567889999999999999999999985 46689999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      ++|+|.++++.   ..++..+..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++........  
T Consensus       473 ~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~  549 (656)
T 2j0j_A          473 TLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA  549 (656)
T ss_dssp             TTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC------
T ss_pred             CCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeecCCCcceec
Confidence            99999999974   357889999999999999999999   9999999999999999999999999999765332211  


Q ss_pred             -CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          761 -FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                       ...++..|++||......++.++|||||||++|||+| |..||.+.....      ....+........++   .....
T Consensus       550 ~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~------~~~~i~~~~~~~~~~---~~~~~  620 (656)
T 2j0j_A          550 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND------VIGRIENGERLPMPP---NCPPT  620 (656)
T ss_dssp             ----CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHHHHHHTCCCCCCT---TCCHH
T ss_pred             cCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH------HHHHHHcCCCCCCCc---cccHH
Confidence             1113345788898888888999999999999999998 777776432111      111111111111111   22346


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +.+++.+||+.||++|||++|+++.|+.+
T Consensus       621 l~~li~~~l~~dP~~RPs~~el~~~L~~i  649 (656)
T 2j0j_A          621 LYSLMTKCWAYDPSRRPRFTELKAQLSTI  649 (656)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            77899999999999999999999999876

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=1.1e-35  Score=323.47  Aligned_cols=247  Identities=17%  Similarity=0.201  Sum_probs=192.5

Q ss_pred             hhhhccCCCCCceeeeec--CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCC------ceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL--PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKN------LIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~n------iv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|..  .+|+.||||+++......+.+.+|++++++++|++      |+++++++.+.+..++|||
T Consensus        18 ~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e   97 (339)
T 1z57_A           18 IVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFE   97 (339)
T ss_dssp             EEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEc
Confidence            889999999999999985  57899999999866556677889999999887765      9999999999999999999


Q ss_pred             ccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-------------------C
Q 002875          684 YLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-------------------N  740 (872)
Q Consensus       684 y~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-------------------~  740 (872)
                      |+ +|+|.+++...    .++.+...++.|+++||+|||+.   +|+||||||+||+++.                   +
T Consensus        98 ~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~  173 (339)
T 1z57_A           98 LL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLIN  173 (339)
T ss_dssp             CC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CEEEEESC
T ss_pred             CC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccccccccccC
Confidence            99 88999998753    46888999999999999999999   9999999999999987                   6


Q ss_pred             CCeeEccccccccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-cccc-
Q 002875          741 MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GLLG-  818 (872)
Q Consensus       741 ~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~~~-  818 (872)
                      +.+||+|||+++...... ....++..|.+||...+..++.++||||+||++|||+||..||............ .... 
T Consensus       174 ~~~kl~Dfg~~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~  252 (339)
T 1z57_A          174 PDIKVVDFGSATYDDEHH-STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGP  252 (339)
T ss_dssp             CCEEECCCSSCEETTSCC-CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCS
T ss_pred             CCceEeeCcccccCcccc-ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence            689999999987644322 2233556688889888888899999999999999999999998754321100000 0000 


Q ss_pred             ------------cccccc---c-----------------cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 ------------EMYNEN---E-----------------VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ------------~~~~~~---~-----------------~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                  ......   +                 ............++.+++.+||+.||++|||++|++++
T Consensus       253 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  329 (339)
T 1z57_A          253 LPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKH  329 (339)
T ss_dssp             CCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             CCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcC
Confidence                        000000   0                 00000112345678899999999999999999999865

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.1e-35  Score=326.35  Aligned_cols=251  Identities=18%  Similarity=0.235  Sum_probs=190.4

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecC-----Cee
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----HQA  678 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~~  678 (872)
                      .|.  ..+.||+|+||.||+|.. .+|+.||||++....  ...+.+.+|++++++++|||||++++++...     ...
T Consensus        28 ~y~--~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           28 RYT--NLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cEE--EEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            455  889999999999999985 578899999997532  2346788999999999999999999999764     368


Q ss_pred             EEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      |+||||++ |+|.+++.. ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       106 ~iv~e~~~-~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  181 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  181 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EEEEcccC-cCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEecCCC
Confidence            99999997 599998875 468899999999999999999999   9999999999999999999999999999765432


Q ss_pred             CC-----CCcccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-cc--------cccc--
Q 002875          758 DG-----SFPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GL--------LGEM--  820 (872)
Q Consensus       758 ~~-----~~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~--------~~~~--  820 (872)
                      ..     ....++.+|.+||... ...++.++||||+||++|||+||+.||............ ..        ....  
T Consensus       182 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  261 (364)
T 3qyz_A          182 HDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIIN  261 (364)
T ss_dssp             GCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCC
T ss_pred             CCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhh
Confidence            21     1123566678888654 455889999999999999999999998754322110000 00        0000  


Q ss_pred             ------ccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 ------YNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ------~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                            ....+.......    .....++.+++.+||+.||++|||++|++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          262 LKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             HHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                  000000000000    1123567899999999999999999999875

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.1e-35  Score=329.64  Aligned_cols=247  Identities=19%  Similarity=0.209  Sum_probs=182.2

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecC------CeeEEEE
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------HQAYLLY  682 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lv~  682 (872)
                      |...+.||+|+||.||+|+. .+|+.||||++....   +...+|++++++++|||||+++++|...      ...++||
T Consensus        56 y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~  132 (420)
T 1j1b_A           56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK---RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVL  132 (420)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT---TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc---hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeeh
Confidence            44889999999999999997 579999999986532   2334689999999999999999998542      2467999


Q ss_pred             cccCCCChHHHhh------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-CCeeEcccccccccc
Q 002875          683 DYLPNGNLSEKIR------TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-MEPHLAEFGFKYLTQ  755 (872)
Q Consensus       683 ey~~~g~L~~~l~------~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-~~~ki~dfg~~~~~~  755 (872)
                      ||+++ ++.+.+.      ...++.....++.|+++||+|||+.   +|+||||||+|||++.+ +.+||+|||+++...
T Consensus       133 e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~  208 (420)
T 1j1b_A          133 DYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLV  208 (420)
T ss_dssp             ECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             hcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhcc
Confidence            99986 6666553      2468888999999999999999998   99999999999999965 568999999997653


Q ss_pred             ccCC-CCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-cc--------cccccc---c
Q 002875          756 LADG-SFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-ID--------GLLGEM---Y  821 (872)
Q Consensus       756 ~~~~-~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-~~--------~~~~~~---~  821 (872)
                      .... ....++.+|.+||+..+ ..++.++||||+||++|||+||+.||.+........ +.        ..+..+   +
T Consensus       209 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~  288 (420)
T 1j1b_A          209 RGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNY  288 (420)
T ss_dssp             TTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCC
T ss_pred             cCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhh
Confidence            3222 12235667888888754 468899999999999999999999987543211000 00        000000   0


Q ss_pred             cccccC--CCCchH-----HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          822 NENEVG--SSSSLQ-----DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       822 ~~~~~~--~~~~~~-----~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .....+  ....+.     ....++.+++.+||+.||++|||+.|++++
T Consensus       289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          289 TEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             CCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence            000000  000011     123568899999999999999999999865

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=324.04  Aligned_cols=251  Identities=18%  Similarity=0.227  Sum_probs=190.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCe----
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ----  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~----  677 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++....   ...+.+.+|+.++++++|||||++++++...+.    
T Consensus        24 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  101 (353)
T 3coi_A           24 KTYV--SPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  101 (353)
T ss_dssp             TTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             ceEE--EeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence            3455  788999999999999985 579999999996532   235677899999999999999999999987653    


Q ss_pred             --eEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          678 --AYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       678 --~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                        .|+||||++ |+|.+++....++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  177 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHAD  177 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC--
T ss_pred             eeEEEEecccc-CCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccCCC
Confidence              499999997 699999988889999999999999999999999   99999999999999999999999999987643


Q ss_pred             ccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc---------cc----------
Q 002875          756 LADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI---------DG----------  815 (872)
Q Consensus       756 ~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~---------~~----------  815 (872)
                      .... ...++.+|.+||.... ..++.++||||+||++|||+||+.||.+.........         ..          
T Consensus       178 ~~~~-~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  256 (353)
T 3coi_A          178 AEMT-GYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAA  256 (353)
T ss_dssp             -------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHH
T ss_pred             CCcc-ccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHH
Confidence            3221 2234556788887765 6788899999999999999999999875431100000         00          


Q ss_pred             --cccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          816 --LLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       816 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                        .......................+.+++.+||+.||++|||++|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          257 KSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             HHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence              000000000000011112234568899999999999999999999865

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=316.02  Aligned_cols=242  Identities=16%  Similarity=0.174  Sum_probs=185.1

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-----hhHHHHHHHHHHhhccCCCCceeEEEEEe--cCCe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-----TRIKIVSEFITRIGTVRHKNLIRLLGFCY--NRHQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~H~niv~l~~~~~--~~~~  677 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++....     ...+.+.+|++++++++||||+++++++.  +.+.
T Consensus         5 ~~y~--i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (305)
T 2wtk_C            5 GKYL--MGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK   82 (305)
T ss_dssp             CCBC--CCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred             ccee--EeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence            3455  889999999999999986 578999999997532     23567889999999999999999999985  4457


Q ss_pred             eEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      .++||||+++| +.+++..    ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++..
T Consensus        83 ~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~  158 (305)
T 2wtk_C           83 MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEA  158 (305)
T ss_dssp             EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccc
Confidence            89999999976 7676643    457889999999999999999999   999999999999999999999999999875


Q ss_pred             ccccCC----CCcccccccCchhhhcccC--CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          754 TQLADG----SFPAKIAWTESGEFYNAMK--EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       754 ~~~~~~----~~~~~~~~~~~~e~~~~~~--~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      ......    ....+...|.+||...+..  .+.++||||+||++|||+||+.||.......      ....+.... ..
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~i~~~~-~~  231 (305)
T 2wtk_C          159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYK------LFENIGKGS-YA  231 (305)
T ss_dssp             CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHCC-CC
T ss_pred             cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHH------HHHHHhcCC-CC
Confidence            432111    1122455677888776533  3678999999999999999999987432110      011111111 11


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+.   .....+.+++.+||+.||++|||++|++++
T Consensus       232 ~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          232 IPG---DCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             CCS---SSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             CCC---ccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            111   122456788999999999999999999975

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.8e-35  Score=330.11  Aligned_cols=241  Identities=18%  Similarity=0.184  Sum_probs=180.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.||+|+||.||.+...+|+.||||++...  ..+.+.+|+++++++ +|||||++++++.+++..|+|||||. |+|
T Consensus        19 ~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~--~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL   95 (434)
T 2rio_A           19 SEKILGYGSSGTVVFQGSFQGRPVAVKRMLID--FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNL   95 (434)
T ss_dssp             EEEEEEECSTTCEEEEEESSSSEEEEEEEEGG--GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEH
T ss_pred             ccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH--HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCH
Confidence            56789999999998777778999999998743  245677899999876 89999999999999999999999996 699


Q ss_pred             HHHhhCCCC---------HHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC-------------CCeeEccc
Q 002875          691 SEKIRTKRD---------WAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN-------------MEPHLAEF  748 (872)
Q Consensus       691 ~~~l~~~~~---------~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~-------------~~~ki~df  748 (872)
                      .+++.....         +...+.++.||+.||+|||+.   +|+||||||+||+++.+             +.+||+||
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DF  172 (434)
T 2rio_A           96 QDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDF  172 (434)
T ss_dssp             HHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCC
T ss_pred             HHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEEccc
Confidence            999976432         112367999999999999999   99999999999999654             47999999


Q ss_pred             cccccccccCCC------CcccccccCchhhhcc-------cCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcccc
Q 002875          749 GFKYLTQLADGS------FPAKIAWTESGEFYNA-------MKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPID  814 (872)
Q Consensus       749 g~~~~~~~~~~~------~~~~~~~~~~~e~~~~-------~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~  814 (872)
                      |+++........      ...++..|.+||+..+       ..++.++||||+||++|||+| |..||.+.....    .
T Consensus       173 G~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~----~  248 (434)
T 2rio_A          173 GLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE----S  248 (434)
T ss_dssp             TTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH----H
T ss_pred             ccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH----H
Confidence            999765432211      1235566788888754       567889999999999999999 777775432111    0


Q ss_pred             ccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          815 GLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ............. .........++.+++.+||+.||++|||++|++++
T Consensus       249 ~i~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  296 (434)
T 2rio_A          249 NIIRGIFSLDEMK-CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH  296 (434)
T ss_dssp             HHHHTCCCCCCCT-TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHhcCCCCccccc-ccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence            0111111111010 11123455678899999999999999999999864

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.1e-35  Score=314.88  Aligned_cols=232  Identities=16%  Similarity=0.200  Sum_probs=175.3

Q ss_pred             hhhHHhhcCcchh-hhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHh-hccCCCCceeEEEEEec---
Q 002875          601 ANDVLRSFNSTEC-EEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRI-GTVRHKNLIRLLGFCYN---  674 (872)
Q Consensus       601 ~~~~~~~~~~~~~-~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l-~~l~H~niv~l~~~~~~---  674 (872)
                      ..++...|.  .. +.+|+|+||.||+|.. .+|+.||||+++..    ..+.+|++++ +..+||||+++++++..   
T Consensus        12 ~~~~~~~y~--~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~   85 (299)
T 3m2w_A           12 KNAIIDDYK--VTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYA   85 (299)
T ss_dssp             CSCGGGTEE--EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEET
T ss_pred             ccccccchh--hcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc----HHHHHHHHHHHHhccCCCchhHHhhhhhhcC
Confidence            344555554  54 6799999999999986 67999999999742    3466777777 55689999999999876   


Q ss_pred             -CCeeEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEc
Q 002875          675 -RHQAYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLA  746 (872)
Q Consensus       675 -~~~~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~  746 (872)
                       .+..++||||+++|+|.+++..    ..++.+...++.|++.||+|||+.   +|+||||||+||+++.   ++.+||+
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~  162 (299)
T 3m2w_A           86 GRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLT  162 (299)
T ss_dssp             TEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred             CCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEe
Confidence             6789999999999999999975    357889999999999999999999   9999999999999998   7889999


Q ss_pred             cccccccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc
Q 002875          747 EFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       747 dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      |||++....                    ...++.++||||+||++|||+||+.||..........  ............
T Consensus       163 Dfg~a~~~~--------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~--~~~~~~~~~~~~  220 (299)
T 3m2w_A          163 DFGFAKETT--------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP--GMKTRIRMGQYE  220 (299)
T ss_dssp             CCTTCEECT--------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------C--CSCCSSCTTCCS
T ss_pred             ccccccccc--------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhH--HHHHHHhhcccc
Confidence            999985422                    1234567899999999999999999987543221100  000011100000


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...+.......++.+++.+||+.||++|||++|++++
T Consensus       221 ~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          221 FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            0000011234568899999999999999999999875

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.5e-35  Score=327.42  Aligned_cols=195  Identities=18%  Similarity=0.174  Sum_probs=163.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-CC-----CceeEEEEEecCCee
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-HK-----NLIRLLGFCYNRHQA  678 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~-----niv~l~~~~~~~~~~  678 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||+++......+.+..|+.+++.++ |+     +||++++++...+..
T Consensus        54 ~~y~--~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  131 (382)
T 2vx3_A           54 DRYE--IDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL  131 (382)
T ss_dssp             TTEE--EEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred             eeEE--EEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence            4455  889999999999999985 57889999999866555667778888888775 44     499999999999999


Q ss_pred             EEEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC--CCCCeeEccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD--ENMEPHLAEFGFKY  752 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~--~~~~~ki~dfg~~~  752 (872)
                      |+||||++ |+|.+++...    .++.....++.|++.||+|||++ ..+|+||||||+||+++  .++.+||+|||+++
T Consensus       132 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~  209 (382)
T 2vx3_A          132 CLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSC  209 (382)
T ss_dssp             EEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             EEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCce
Confidence            99999996 5999998753    58899999999999999999952 23899999999999994  57789999999997


Q ss_pred             cccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCC
Q 002875          753 LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG  805 (872)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~  805 (872)
                      ....... ...++.+|.+||+..+..++.++|||||||++|||+||+.||...
T Consensus       210 ~~~~~~~-~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          210 QLGQRIY-QYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             ETTCCCC-SSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ecccccc-cccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            6543222 223556688899988888999999999999999999999998754

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=9.8e-36  Score=325.80  Aligned_cols=252  Identities=19%  Similarity=0.211  Sum_probs=189.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecC-----Ce
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----HQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----~~  677 (872)
                      +.|.  ..+.+|+|+||.||+|.. .+|+.||||++....  .....+.+|++++++++||||+++++++...     ..
T Consensus        11 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A           11 SDFQ--LKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             TTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred             cceE--EeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence            3455  889999999999999986 579999999997432  2355678899999999999999999998754     67


Q ss_pred             eEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      .|+||||++ |+|.+++.. ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        89 ~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~  164 (353)
T 2b9h_A           89 VYIIQELMQ-TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDE  164 (353)
T ss_dssp             EEEEECCCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             EEEEEeccC-ccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccccccccc
Confidence            899999997 699998875 468899999999999999999999   999999999999999999999999999875432


Q ss_pred             cCC------------CCcccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-----------
Q 002875          757 ADG------------SFPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-----------  812 (872)
Q Consensus       757 ~~~------------~~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-----------  812 (872)
                      ...            ....++.+|.+||... ...++.++||||+||++|||+||+.||..........           
T Consensus       165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~  244 (353)
T 2b9h_A          165 SAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHS  244 (353)
T ss_dssp             ---------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCS
T ss_pred             ccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCch
Confidence            111            0112455677888654 4678889999999999999999999987543110000           


Q ss_pred             ---c----cccccccccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          813 ---I----DGLLGEMYNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       813 ---~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                         .    .....+.....+.......    .....++.+++.+||+.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          245 DNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             TTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence               0    0000000000000000000    1223567899999999999999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=318.73  Aligned_cols=248  Identities=19%  Similarity=0.244  Sum_probs=180.3

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEe--------------cC
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCY--------------NR  675 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~--------------~~  675 (872)
                      ..+.||+|+||.||+|... +|+.||||++.... ...+.+.+|++++++++|||||++++++.              +.
T Consensus        15 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~   94 (320)
T 2i6l_A           15 DLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTEL   94 (320)
T ss_dssp             EEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSC
T ss_pred             EEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccccccc
Confidence            8899999999999999964 59999999987543 34567889999999999999999999884              34


Q ss_pred             CeeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-CCCCeeEcccccccc
Q 002875          676 HQAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHLAEFGFKYL  753 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-~~~~~ki~dfg~~~~  753 (872)
                      +..|+||||++ |+|.+++.. ..++.....++.|+++||+|||+.   +|+||||||+||+++ +++.+||+|||+++.
T Consensus        95 ~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~  170 (320)
T 2i6l_A           95 NSVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIGDFGLARI  170 (320)
T ss_dssp             SEEEEEEECCS-EEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEECCCTTCBC
T ss_pred             CceeEEeeccC-CCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEccCccccc
Confidence            67899999998 699999976 457888899999999999999999   999999999999997 567899999999876


Q ss_pred             ccccC-----CCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-ccc--------c
Q 002875          754 TQLAD-----GSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GLL--------G  818 (872)
Q Consensus       754 ~~~~~-----~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~~--------~  818 (872)
                      .....     .....+..+|.+||.... ..++.++|||||||++|||+||+.||............ ...        .
T Consensus       171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  250 (320)
T 2i6l_A          171 MDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQ  250 (320)
T ss_dssp             C--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHH
T ss_pred             cCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhh
Confidence            43211     111123455777786644 67888999999999999999999998754321100000 000        0


Q ss_pred             cc-------ccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 EM-------YNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ~~-------~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +.       ............    .....++.+++.+||+.||++|||++|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          251 ELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             HHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            00       000000000000    1124568899999999999999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-33  Score=319.35  Aligned_cols=347  Identities=24%  Similarity=0.327  Sum_probs=284.3

Q ss_pred             cCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 002875           39 FNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF  118 (872)
Q Consensus        39 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  118 (872)
                      ..+++|+.|++++|.+.. +| .+..+++|++||+++|.+.+..|  +.++++|++|++++|.+.+..+  |+++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            457899999999999875 45 48899999999999999986544  9999999999999999987554  999999999


Q ss_pred             eeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCC
Q 002875          119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL  198 (872)
Q Consensus       119 L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  198 (872)
                      |++++|.+++..+  +..+++|++|++++|.+.+ ++ .+.++++|+.|+++ +.+.+..  .+..+++|+.|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            9999999987543  8899999999999988765 33 47888899999986 4454332  378888899999998888


Q ss_pred             cccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccC
Q 002875          199 AGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL  278 (872)
Q Consensus       199 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~  278 (872)
                      .+.  ..+..+++|++|++++|.+++..|  ++.+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence            754  347888888999998888876544  67788888888888888753  357778888888888888876544  6


Q ss_pred             CCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcE
Q 002875          279 GRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINY  358 (872)
Q Consensus       279 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  358 (872)
                      ..+++|+.|++++|.+.+                        ..+  +..+++|+.|++++|++++..+  +..+++|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~------------------------~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  313 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISN------------------------ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY  313 (466)
T ss_dssp             TTCTTCSEEECCSSCCCC------------------------CGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred             hcCCCCCEEECCCCccCc------------------------ccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence            677777888777776652                        111  5678999999999999997655  788999999


Q ss_pred             EEcCCCcCCCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCCCCCCCcCCccceeecccccc
Q 002875          359 IDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNL  438 (872)
Q Consensus       359 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l  438 (872)
                      |++++|++.+..|  +..+++|++|++++|+. .+.  ..+..+++|+.|++++|.+++..| +..+++|+.++++.|.+
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKV-SDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCC-CCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCcc-CCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence            9999999998765  77899999999999954 333  367789999999999999988776 88899999999999999


Q ss_pred             CC
Q 002875          439 SG  440 (872)
Q Consensus       439 ~~  440 (872)
                      ++
T Consensus       388 ~~  389 (466)
T 1o6v_A          388 TN  389 (466)
T ss_dssp             EC
T ss_pred             cC
Confidence            87

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=3.2e-35  Score=317.91  Aligned_cols=251  Identities=20%  Similarity=0.265  Sum_probs=187.1

Q ss_pred             hcCcchhhhccCCCCCceeeeec--CCCcEEEEEEeeccch---hHHHHHHHHHHhhcc---CCCCceeEEEEEe-----
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL--PTGITVSVKKIEWGAT---RIKIVSEFITRIGTV---RHKNLIRLLGFCY-----  673 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~--~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l---~H~niv~l~~~~~-----  673 (872)
                      .|.  ..+.||+|+||.||+|..  .+|+.||||++.....   ....+.+|+.+++++   +||||++++++|.     
T Consensus        12 ~y~--~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~   89 (326)
T 1blx_A           12 QYE--CVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   89 (326)
T ss_dssp             TEE--EEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cee--eeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccC
Confidence            355  889999999999999986  5789999999865322   223456677776665   8999999999997     


Q ss_pred             cCCeeEEEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccc
Q 002875          674 NRHQAYLLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFG  749 (872)
Q Consensus       674 ~~~~~~lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg  749 (872)
                      .....++||||++ |+|.+++...    .++.+...++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        90 ~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~Dfg  165 (326)
T 1blx_A           90 RETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFG  165 (326)
T ss_dssp             SEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCC
T ss_pred             CCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEecCc
Confidence            5567899999998 6999998652    57889999999999999999999   99999999999999999999999999


Q ss_pred             ccccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCC---------------ccc
Q 002875          750 FKYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQN---------------KPI  813 (872)
Q Consensus       750 ~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~---------------~~~  813 (872)
                      +++....... ....+...|.+||......++.++||||+||++|||+||+.||........               +..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  245 (326)
T 1blx_A          166 LARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPR  245 (326)
T ss_dssp             SCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCT
T ss_pred             ccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCcc
Confidence            9875432211 122245567888988877889999999999999999999999875432110               000


Q ss_pred             cccc-ccccccccc-CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          814 DGLL-GEMYNENEV-GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       814 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .... ......... ............+.+++.+||+.||++|||++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  297 (326)
T 1blx_A          246 DVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  297 (326)
T ss_dssp             TCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            0000 000000000 0000011223467789999999999999999999965

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=322.91  Aligned_cols=321  Identities=20%  Similarity=0.188  Sum_probs=277.3

Q ss_pred             CCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           44 LISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        44 L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      -+.++.+++.+.. +|..+  .+++++|||++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus        13 ~~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            4678888888874 56554  36899999999999988888999999999999999999998899999999999999999


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCC
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP  203 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  203 (872)
                      |.++...+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            99988777778999999999999999888888888899999999999999988888888889999999999999887777


Q ss_pred             cccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCC
Q 002875          204 WEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSK  283 (872)
Q Consensus       204 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~  283 (872)
                      ..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|.......+|+.|++++|.+++..+..+..+++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            77888899999999999988877788888899999999988877777766666678888888888888654456777888


Q ss_pred             CcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCC
Q 002875          284 LRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSR  363 (872)
Q Consensus       284 L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  363 (872)
                      |+.|++++|.+.+.                        .+..|..+++|+.|++++|++++..+..|..+++|+.|++++
T Consensus       250 L~~L~Ls~n~l~~~------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          250 LRFLNLSYNPISTI------------------------EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             CCEEECCSSCCCEE------------------------CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred             cCeeECCCCcCCcc------------------------ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence            88888888877632                        233567789999999999999999999999999999999999


Q ss_pred             CcCCCCCCchhhhhcccccccccCCCCC
Q 002875          364 NGFTGGIPTDINQASKLEYFNVSNNPKL  391 (872)
Q Consensus       364 N~l~~~~~~~~~~l~~L~~L~ls~n~~l  391 (872)
                      |++++..+..|..+++|++|++++|+..
T Consensus       306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          306 NQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            9999887778889999999999999753

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=318.81  Aligned_cols=246  Identities=17%  Similarity=0.248  Sum_probs=185.5

Q ss_pred             chhhhccCCCCCceeeeecCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          611 TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ...+.||+|+||.||+|....  .||||+++...   ...+.+.+|+.++++++||||+++++++.+++..++||||+++
T Consensus        36 ~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~  113 (319)
T 2y4i_B           36 EIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKG  113 (319)
T ss_dssp             ECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCS
T ss_pred             EEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccC
Confidence            388999999999999998743  59999987532   2345677899999999999999999999999999999999999


Q ss_pred             CChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccccc-------
Q 002875          688 GNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA-------  757 (872)
Q Consensus       688 g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~-------  757 (872)
                      |+|.+++...   .++.+...++.|++.||+|||+.   +|+||||||+||+++ ++.+||+|||+++.....       
T Consensus       114 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~  189 (319)
T 2y4i_B          114 RTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRRED  189 (319)
T ss_dssp             EEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC----------CC
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccccccccccccc
Confidence            9999999763   57889999999999999999999   999999999999998 679999999997653211       


Q ss_pred             CCCCcccccccCchhhhcc---------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCC
Q 002875          758 DGSFPAKIAWTESGEFYNA---------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       758 ~~~~~~~~~~~~~~e~~~~---------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      ......++..|.+||....         ..++.++|||||||++|||+||+.||.......   ..........+...  
T Consensus       190 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~~~~~~~~~~~~--  264 (319)
T 2y4i_B          190 KLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEA---IIWQMGTGMKPNLS--  264 (319)
T ss_dssp             SCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHH---HHHHHHTTCCCCCC--
T ss_pred             ccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHhccCCCCCCC--
Confidence            1111224555778887653         346788999999999999999999986432111   00000000001000  


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      ..   ....++.+++.+||+.||++|||++|+++.|+.+...
T Consensus       265 ~~---~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~  303 (319)
T 2y4i_B          265 QI---GMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKR  303 (319)
T ss_dssp             CS---SCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC---
T ss_pred             cC---CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence            00   1123477889999999999999999999999988654

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=2.8e-35  Score=318.42  Aligned_cols=244  Identities=18%  Similarity=0.198  Sum_probs=169.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHH-HhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFIT-RIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~-~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++....  .....+..|+. +++.++||||+++++++.+++..++||||+++
T Consensus        26 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~  105 (327)
T 3aln_A           26 DLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMST  105 (327)
T ss_dssp             C-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSE
T ss_pred             ehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCC
Confidence            788999999999999986 579999999997542  22334444444 77888999999999999999999999999985


Q ss_pred             CChHHHhh-------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC
Q 002875          688 GNLSEKIR-------TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       688 g~L~~~l~-------~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                       +|.+++.       ...++.....++.|++.||+|||+..  +|+||||||+||+++.++.+||+|||+++........
T Consensus       106 -~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  182 (327)
T 3aln_A          106 -SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAK  182 (327)
T ss_dssp             -EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC-------
T ss_pred             -ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceeccccccc
Confidence             8887764       24578889999999999999999842  8999999999999999999999999998764332211


Q ss_pred             -CcccccccCchhhh----cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCC-CCchHH
Q 002875          761 -FPAKIAWTESGEFY----NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS-SSSLQD  834 (872)
Q Consensus       761 -~~~~~~~~~~~e~~----~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  834 (872)
                       ...++..|.+||..    ....++.++|||||||++|||+||+.||.........     ............ ......
T Consensus       183 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  257 (327)
T 3aln_A          183 TRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQ-----LTQVVKGDPPQLSNSEERE  257 (327)
T ss_dssp             -----------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC------------CCCCCSCCCCCCCCSSCC
T ss_pred             ccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHH-----HHHHhcCCCCCCCCccccc
Confidence             12345567788877    3456788999999999999999999998753321111     111111110000 000111


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.+++.+||+.||++|||++|++++
T Consensus       258 ~~~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          258 FSPSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             CCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence            23467789999999999999999999753

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=6.8e-36  Score=321.73  Aligned_cols=233  Identities=16%  Similarity=0.133  Sum_probs=186.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-------hHHHHHHHHHHhhccC--CCCceeEEEEEecCCeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-------RIKIVSEFITRIGTVR--HKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-------~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~~~~~lv  681 (872)
                      ..+.||+|+||.||+|+. .+|+.||||++.....       ..+.+.+|+.++++++  ||||+++++++.+++..++|
T Consensus        47 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv  126 (320)
T 3a99_A           47 VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLI  126 (320)
T ss_dssp             EEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEE
T ss_pred             EEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEE
Confidence            889999999999999984 6799999999975422       2245667899999996  59999999999999999999


Q ss_pred             EcccCC-CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-CCCCeeEcccccccccccc
Q 002875          682 YDYLPN-GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       682 ~ey~~~-g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-~~~~~ki~dfg~~~~~~~~  757 (872)
                      |||+.+ |+|.+++..  ..++.....++.|+++||+|||+.   +|+||||||+||+++ +++.+||+|||+++.....
T Consensus       127 ~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~  203 (320)
T 3a99_A          127 LERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDT  203 (320)
T ss_dssp             EECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCSS
T ss_pred             EEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeCccccccccc
Confidence            999986 899999875  467888999999999999999999   999999999999999 7889999999998765433


Q ss_pred             CCCCcccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          758 DGSFPAKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       758 ~~~~~~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      ......++..|.+||......+ +.++|||||||++|||+||+.||......            .... ......   ..
T Consensus       204 ~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~------------~~~~-~~~~~~---~~  267 (320)
T 3a99_A          204 VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI------------IRGQ-VFFRQR---VS  267 (320)
T ss_dssp             CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH------------HHCC-CCCSSC---CC
T ss_pred             cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhh------------hccc-cccccc---CC
Confidence            3222335566788887765554 67889999999999999999998642110            0000 000111   12


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .++.+++.+||+.||++|||++|++++
T Consensus       268 ~~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          268 SECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            457789999999999999999999875

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=7.3e-35  Score=313.03  Aligned_cols=240  Identities=16%  Similarity=0.146  Sum_probs=184.5

Q ss_pred             chhhhccCCCCCceeeeecCCCcEEEEEEeeccc---hhHHHHHHHHHHhhccC--CCCceeEEEEEecCCeeEEEEccc
Q 002875          611 TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA---TRIKIVSEFITRIGTVR--HKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ...+.||+|+||.||+|...+|+.||||++....   ...+.+.+|++++++++  ||||+++++++.+++..|+||| +
T Consensus        31 ~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~  109 (313)
T 3cek_A           31 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-C  109 (313)
T ss_dssp             EEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-C
T ss_pred             EEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-c
Confidence            3889999999999999999889999999996532   34567889999999997  4999999999999999999999 5


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---  760 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---  760 (872)
                      .+|+|.+++..  ..++.++..++.|+++||+|||+.   +|+||||||+||++++ +.+||+|||+++........   
T Consensus       110 ~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~  185 (313)
T 3cek_A          110 GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVK  185 (313)
T ss_dssp             CSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC----------
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccccCccccccc
Confidence            67899999975  357888999999999999999999   9999999999999974 88999999998764332211   


Q ss_pred             -CcccccccCchhhhcc-----------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc-C
Q 002875          761 -FPAKIAWTESGEFYNA-----------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV-G  827 (872)
Q Consensus       761 -~~~~~~~~~~~e~~~~-----------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~  827 (872)
                       ...+...|.+||....           ..++.++|||||||++|||+||+.||........     ......++... .
T Consensus       186 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-----~~~~~~~~~~~~~  260 (313)
T 3cek_A          186 DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS-----KLHAIIDPNHEIE  260 (313)
T ss_dssp             ----CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH-----HHHHHHCTTSCCC
T ss_pred             cCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHH-----HHHHHHhcccccC
Confidence             1224556778887754           3677889999999999999999999864322110     01111111100 0


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+...   ..++.+++.+||+.||++|||++|++++
T Consensus       261 ~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          261 FPDIP---EKDLQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             CCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             Ccccc---hHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence            01111   2457788999999999999999999865

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-35  Score=328.39  Aligned_cols=241  Identities=17%  Similarity=0.170  Sum_probs=176.3

Q ss_pred             cchhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          610 STECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      +...+.||+|+||.||.....+|+.||||++.....  +.+.+|+++++++ +|||||++++++.+.+..|+|||||+ |
T Consensus        26 y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~--~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g  102 (432)
T 3p23_A           26 FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF--SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-A  102 (432)
T ss_dssp             EEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE--EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-E
T ss_pred             EecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH--HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-C
Confidence            447889999999997655567899999999964322  2356789999998 79999999999999999999999996 6


Q ss_pred             ChHHHhhCCC---CHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-----CCCeeEccccccccccccC--
Q 002875          689 NLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-----NMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       689 ~L~~~l~~~~---~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-----~~~~ki~dfg~~~~~~~~~--  758 (872)
                      +|.+++....   .+.+...++.|+++||+|||+.   +|+||||||+||+++.     ...+||+|||+++......  
T Consensus       103 ~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~  179 (432)
T 3p23_A          103 TLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS  179 (432)
T ss_dssp             EHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------
T ss_pred             CHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcc
Confidence            9999997632   3445678999999999999999   9999999999999943     3468899999997654321  


Q ss_pred             ---CCCcccccccCchhhhc---ccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCc
Q 002875          759 ---GSFPAKIAWTESGEFYN---AMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSS  831 (872)
Q Consensus       759 ---~~~~~~~~~~~~~e~~~---~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  831 (872)
                         .....++.+|.+||+..   ...++.++||||+||++|||+| |..||........   ....... ...   ....
T Consensus       180 ~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~---~~~~~~~-~~~---~~~~  252 (432)
T 3p23_A          180 FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA---NILLGAC-SLD---CLHP  252 (432)
T ss_dssp             ------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH---HHHTTCC-CCT---TSCT
T ss_pred             eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH---HHHhccC-Ccc---ccCc
Confidence               11123566688888876   4556778999999999999999 6666643221110   0000000 000   0011


Q ss_pred             hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          832 LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       832 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .......+.+++.+||+.||++|||++|++++
T Consensus       253 ~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h  284 (432)
T 3p23_A          253 EKHEDVIARELIEKMIAMDPQKRPSAKHVLKH  284 (432)
T ss_dssp             TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence            11233457789999999999999999999854

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=3.4e-35  Score=324.23  Aligned_cols=250  Identities=15%  Similarity=0.144  Sum_probs=189.8

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-----------CCCceeEEEEEecCC-
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-----------HKNLIRLLGFCYNRH-  676 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-----------H~niv~l~~~~~~~~-  676 (872)
                      |...+.||+|+||.||+|.. .+|+.||||++.......+.+.+|+.++++++           ||||+++++++...+ 
T Consensus        21 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~  100 (373)
T 1q8y_A           21 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP  100 (373)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET
T ss_pred             EEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCC
Confidence            33889999999999999985 68999999999866666777888999998886           899999999998654 


Q ss_pred             ---eeEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC------CCCCe
Q 002875          677 ---QAYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD------ENMEP  743 (872)
Q Consensus       677 ---~~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~------~~~~~  743 (872)
                         ..++||||+ +|+|.+++..    ..++.....++.|++.||+|||+.+  +|+||||||+||+++      ..+.+
T Consensus       101 ~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~~~~~  177 (373)
T 1q8y_A          101 NGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQI  177 (373)
T ss_dssp             TEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             CCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcCcceE
Confidence               789999999 8899999864    3678889999999999999999853  899999999999994      44579


Q ss_pred             eEccccccccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccc---
Q 002875          744 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEM---  820 (872)
Q Consensus       744 ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~---  820 (872)
                      ||+|||+++....... ...++..|.+||...+..++.++||||+||++|||+||+.||................++   
T Consensus       178 kl~Dfg~a~~~~~~~~-~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  256 (373)
T 1q8y_A          178 KIADLGNACWYDEHYT-NSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIEL  256 (373)
T ss_dssp             EECCCTTCEETTBCCC-SCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHH
T ss_pred             EEcccccccccCCCCC-CCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHh
Confidence            9999999976543322 223556688889888888899999999999999999999998744321100000000000   


Q ss_pred             ----------------------------ccccc-------cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 ----------------------------YNENE-------VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ----------------------------~~~~~-------~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                                  .....       ............++.+++.+||+.||++|||++|++++
T Consensus       257 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  334 (373)
T 1q8y_A          257 LGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH  334 (373)
T ss_dssp             HCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred             cCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhC
Confidence                                        00000       00011123456678899999999999999999999875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=4.1e-35  Score=336.31  Aligned_cols=250  Identities=14%  Similarity=0.089  Sum_probs=187.5

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEec------CC
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYN------RH  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~------~~  676 (872)
                      ..|.  ..+.||+|+||.||+|.. .+|+.||||++...  ....+.+.+|++++++++|||||++++++..      .+
T Consensus        14 grY~--i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~   91 (676)
T 3qa8_A           14 GPWE--MKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND   91 (676)
T ss_dssp             ---C--CCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred             CCeE--EEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence            4566  889999999999999986 67999999998753  2345678899999999999999999999865      67


Q ss_pred             eeEEEEcccCCCChHHHhhC-----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC---eeEccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRT-----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME---PHLAEF  748 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~-----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~---~ki~df  748 (872)
                      ..++|||||++|+|.+++..     ..++.....++.|++.||+|||+.   +|+||||||+||+++.++.   +||+||
T Consensus        92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DF  168 (676)
T 3qa8_A           92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDL  168 (676)
T ss_dssp             SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred             eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEccc
Confidence            78999999999999999976     356788899999999999999999   9999999999999997665   999999


Q ss_pred             cccccccccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCc------------cccc
Q 002875          749 GFKYLTQLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNK------------PIDG  815 (872)
Q Consensus       749 g~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~------------~~~~  815 (872)
                      |++......... ...++..|.+||...+..++.++||||+||++|||+||..||........+            ....
T Consensus       169 G~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~  248 (676)
T 3qa8_A          169 GYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYD  248 (676)
T ss_dssp             CCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCC
T ss_pred             ccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhh
Confidence            999765433221 223455678889888888899999999999999999999998653211100            0000


Q ss_pred             cc-cccccccccCC-CCchHHHHHHHHHHHHHcccCCCCCCCCHHHH
Q 002875          816 LL-GEMYNENEVGS-SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEA  860 (872)
Q Consensus       816 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v  860 (872)
                      .. .........+. ..........+.+++..||..||++|||++|+
T Consensus       249 ~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el  295 (676)
T 3qa8_A          249 DLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN  295 (676)
T ss_dssp             CCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred             hhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence            00 00000000111 11123345678899999999999999999774

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=8.8e-35  Score=313.35  Aligned_cols=242  Identities=15%  Similarity=0.161  Sum_probs=170.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.||+|+||.||+|.. .+|+.||||++.....   ..+.+.++..+++.++||||+++++++.+++..++||||+ +
T Consensus        29 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~  107 (318)
T 2dyl_A           29 NLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-G  107 (318)
T ss_dssp             EEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-S
T ss_pred             ccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-C
Confidence            788999999999999986 4799999999975432   2344555566788899999999999999999999999999 4


Q ss_pred             CChHHHhh---CCCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-CCc
Q 002875          688 GNLSEKIR---TKRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-SFP  762 (872)
Q Consensus       688 g~L~~~l~---~~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-~~~  762 (872)
                      +.+.....   ...++.....++.|+++||+|||+ .   +|+||||||+||+++.++.+||+|||++........ ...
T Consensus       108 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  184 (318)
T 2dyl_A          108 TCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRS  184 (318)
T ss_dssp             EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC------------
T ss_pred             CcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcccccc
Confidence            55555543   356888899999999999999998 5   899999999999999999999999999865433221 122


Q ss_pred             ccccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHH
Q 002875          763 AKIAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIK  837 (872)
Q Consensus       763 ~~~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (872)
                      .+...|.+||...     ...++.++|||||||++|||+||+.||........     ............ .+.......
T Consensus       185 ~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~  258 (318)
T 2dyl_A          185 AGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFE-----VLTKVLQEEPPL-LPGHMGFSG  258 (318)
T ss_dssp             --CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHH-----HHHHHHHSCCCC-CCSSSCCCH
T ss_pred             CCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHH-----HHHHHhccCCCC-CCccCCCCH
Confidence            2445577888773     45678889999999999999999999875322110     011111111000 010011224


Q ss_pred             HHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          838 LVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       838 ~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+++.+||+.||++|||++|++++
T Consensus       259 ~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          259 DFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             HHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhhC
Confidence            57788999999999999999999864

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=318.24  Aligned_cols=237  Identities=16%  Similarity=0.156  Sum_probs=182.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-------hHHHHHHHHHHhhcc----CCCCceeEEEEEe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-------RIKIVSEFITRIGTV----RHKNLIRLLGFCY  673 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-------~~~~~~~e~~~l~~l----~H~niv~l~~~~~  673 (872)
                      +.|.  ..+.||+|+||.||+|.. .+|+.||||++.....       ....+.+|+.+++++    +||||+++++++.
T Consensus        31 ~~y~--~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~  108 (312)
T 2iwi_A           31 AEYR--LGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFE  108 (312)
T ss_dssp             --CE--EEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-
T ss_pred             hceE--EeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEe
Confidence            4455  889999999999999985 6789999999965422       223455788888888    8999999999999


Q ss_pred             cCCeeEEEEcc-cCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-CCCCeeEcccc
Q 002875          674 NRHQAYLLYDY-LPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHLAEFG  749 (872)
Q Consensus       674 ~~~~~~lv~ey-~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-~~~~~ki~dfg  749 (872)
                      +.+..++|||| +++|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++ .++.+||+|||
T Consensus       109 ~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~dfg  185 (312)
T 2iwi_A          109 TQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDFG  185 (312)
T ss_dssp             ----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEECCCS
T ss_pred             cCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEEEcc
Confidence            99999999999 789999999975  468899999999999999999999   999999999999999 88999999999


Q ss_pred             ccccccccCCCCcccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCC
Q 002875          750 FKYLTQLADGSFPAKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      +++...........+...|.+||......+ +.++||||+||++|||+||+.||.....            ..... ...
T Consensus       186 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~------------~~~~~-~~~  252 (312)
T 2iwi_A          186 SGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE------------ILEAE-LHF  252 (312)
T ss_dssp             SCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH------------HHHTC-CCC
T ss_pred             hhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH------------Hhhhc-cCC
Confidence            987654433233335556778887765544 4589999999999999999999863211            00000 000


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..   .....+.+++.+||+.||++|||++|++++
T Consensus       253 ~~---~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          253 PA---HVSPDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             CT---TSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             cc---cCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11   122457789999999999999999999975

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=9.5e-35  Score=318.33  Aligned_cols=251  Identities=16%  Similarity=0.168  Sum_probs=191.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCC-cEEEEEEeeccchhHHHHHHHHHHhhccCCCC------ceeEEEEEecCCe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTG-ITVSVKKIEWGATRIKIVSEFITRIGTVRHKN------LIRLLGFCYNRHQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g-~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~n------iv~l~~~~~~~~~  677 (872)
                      +.|.  ..+.||+|+||.||+|.. .+| +.||||+++......+.+.+|+.++++++|++      ++.+++++...+.
T Consensus        19 ~~y~--~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (355)
T 2eu9_A           19 ERYE--IVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH   96 (355)
T ss_dssp             TTEE--EEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred             ccEE--EEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence            3455  889999999999999985 344 78999999866566777888999999998776      9999999999999


Q ss_pred             eEEEEcccCCCChHHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee----------------
Q 002875          678 AYLLYDYLPNGNLSEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF----------------  737 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill----------------  737 (872)
                      .++||||+ +|++.+++..    ..++.+...++.|++.||+|||+.   +|+||||||+||++                
T Consensus        97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~  172 (355)
T 2eu9_A           97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCE  172 (355)
T ss_dssp             EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred             EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccccccc
Confidence            99999999 5677777653    357889999999999999999999   99999999999999                


Q ss_pred             ---CCCCCeeEccccccccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc
Q 002875          738 ---DENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID  814 (872)
Q Consensus       738 ---~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~  814 (872)
                         +.++.+||+|||+++....... ...++..|.+||...+..++.++||||+||++|||+||+.||............
T Consensus       173 ~~~~~~~~~kl~Dfg~~~~~~~~~~-~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~  251 (355)
T 2eu9_A          173 EKSVKNTSIRVADFGSATFDHEHHT-TIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMM  251 (355)
T ss_dssp             EEEESCCCEEECCCTTCEETTSCCC-SSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             ccccCCCcEEEeecCcccccccccc-CCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence               5678999999999976443322 223556688889888888899999999999999999999998754321100000


Q ss_pred             -ccccc-------------c-ccccc-------------------cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHH
Q 002875          815 -GLLGE-------------M-YNENE-------------------VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEA  860 (872)
Q Consensus       815 -~~~~~-------------~-~~~~~-------------------~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v  860 (872)
                       .....             . .....                   ............++.+++.+||+.||++|||++|+
T Consensus       252 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~  331 (355)
T 2eu9_A          252 EKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEA  331 (355)
T ss_dssp             HHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             HHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHH
Confidence             00000             0 00000                   00000011234578899999999999999999999


Q ss_pred             HHH
Q 002875          861 LKL  863 (872)
Q Consensus       861 ~~~  863 (872)
                      +++
T Consensus       332 l~h  334 (355)
T 2eu9_A          332 LLH  334 (355)
T ss_dssp             TTS
T ss_pred             hcC
Confidence            854

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-32  Score=304.59  Aligned_cols=309  Identities=17%  Similarity=0.122  Sum_probs=149.7

Q ss_pred             CCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEee
Q 002875           41 LTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH  120 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  120 (872)
                      ++++++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..|..|+++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34444444444444433333344444444444444444444444444444444444444444444444444444444444


Q ss_pred             CccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcc
Q 002875          121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG  200 (872)
Q Consensus       121 L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  200 (872)
                      |++|.++...+..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.   .+..+++|+.|++++|.+.+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence            444444433333344444444444444444444444445555555555555555432   13344555555555555542


Q ss_pred             cCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCC
Q 002875          201 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGR  280 (872)
Q Consensus       201 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~  280 (872)
                           +...++|++|++++|.+... |.  ...++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..
T Consensus       201 -----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          201 -----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             -----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             -----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence                 22234555666666655533 21  1234566666666665542  34555666666666666666555666666


Q ss_pred             CCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEE
Q 002875          281 NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID  360 (872)
Q Consensus       281 ~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  360 (872)
                      +++|+.|++++|.+.+ +|..+...+.|+.|++++|++. .+|..+..+++|+.|++++|+++..   .+..+++|+.|+
T Consensus       271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~---~~~~~~~L~~L~  345 (390)
T 3o6n_A          271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLT  345 (390)
T ss_dssp             CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEE
T ss_pred             cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee---CchhhccCCEEE
Confidence            6666666666665542 2222222223333333333332 1222334455566666666655533   144455555555


Q ss_pred             cCCCcCC
Q 002875          361 LSRNGFT  367 (872)
Q Consensus       361 Ls~N~l~  367 (872)
                      +++|.+.
T Consensus       346 l~~N~~~  352 (390)
T 3o6n_A          346 LSHNDWD  352 (390)
T ss_dssp             CCSSCEE
T ss_pred             cCCCCcc
Confidence            5555544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.5e-34  Score=337.50  Aligned_cols=236  Identities=15%  Similarity=0.168  Sum_probs=184.5

Q ss_pred             hhcCcchhhhccCCCCCceeeeecC--CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCe----
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLP--TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ----  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~--~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~----  677 (872)
                      ..|.  ..+.||+|+||.||+|...  +|+.||||++....  ...+.+.+|++++++++|||||+++++|...+.    
T Consensus        80 ~~y~--i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~  157 (681)
T 2pzi_A           80 GQYE--VKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP  157 (681)
T ss_dssp             TTEE--EEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred             CceE--EEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence            3455  8899999999999999864  68999999986432  335678899999999999999999999987654    


Q ss_pred             -eEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          678 -AYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       678 -~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                       .|+||||+++|+|.+++....++.+++.|+.||++||+|||+.   +|+||||||+||+++.+ .+||+|||+++....
T Consensus       158 ~~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~  233 (681)
T 2pzi_A          158 VGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINS  233 (681)
T ss_dssp             EEEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEETTC
T ss_pred             eeEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhccc
Confidence             7999999999999999988889999999999999999999999   99999999999999986 899999999876543


Q ss_pred             cCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          757 ADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       757 ~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                      .  ....++..|++||..... ++.++|||||||++|||++|..|+.....          ...      ..........
T Consensus       234 ~--~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~----------~~~------~~~~~~~~~~  294 (681)
T 2pzi_A          234 F--GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYV----------DGL------PEDDPVLKTY  294 (681)
T ss_dssp             C--SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEEC----------SSC------CTTCHHHHHC
T ss_pred             C--CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccc----------ccc------cccccccccC
Confidence            2  223355667888877654 47899999999999999999777653110          000      0011112234


Q ss_pred             HHHHHHHHHcccCCCCCCCC-HHHHHHHHcc
Q 002875          837 KLVLDVALLCTRSTPSDRPS-MEEALKLLSG  866 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt-~~~v~~~L~~  866 (872)
                      ..+.+++.+||+.||++||+ ++++.+.|..
T Consensus       295 ~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~  325 (681)
T 2pzi_A          295 DSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG  325 (681)
T ss_dssp             HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence            56789999999999999995 5555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.9e-32  Score=317.92  Aligned_cols=307  Identities=15%  Similarity=0.114  Sum_probs=187.4

Q ss_pred             CCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEee
Q 002875           41 LTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH  120 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  120 (872)
                      +.+++.|++++|.+..+.+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45666666666666655555556666666666666666655555666666666666666666665566666666666666


Q ss_pred             CccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcc
Q 002875          121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG  200 (872)
Q Consensus       121 L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  200 (872)
                      |++|.+++..+..|+.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..   ++.+++|+.|++++|.+.+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            6666666554455566666666666666666666666666667777777777666532   3445667777777776653


Q ss_pred             cCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCC
Q 002875          201 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGR  280 (872)
Q Consensus       201 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~  280 (872)
                           +...++|+.|++++|.+....+. +  .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..+..
T Consensus       207 -----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 -----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             -----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             -----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence                 23445677777777776643222 1  2567777777777765  356677777777777777777777777777


Q ss_pred             CCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEE
Q 002875          281 NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYID  360 (872)
Q Consensus       281 ~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  360 (872)
                      +++|+.|++++|.+.+ +|..+                        ..+++|+.|+|++|.++ .+|..+..+++|++|+
T Consensus       277 l~~L~~L~Ls~N~l~~-l~~~~------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          277 MQRLERLYISNNRLVA-LNLYG------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             CSSCCEEECTTSCCCE-EECSS------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             ccCCCEEECCCCCCCC-CCccc------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence            7777777777777754 23322                        23444555555555554 2333444455555555


Q ss_pred             cCCCcCCCCCCchhhhhcccccccccCCC
Q 002875          361 LSRNGFTGGIPTDINQASKLEYFNVSNNP  389 (872)
Q Consensus       361 Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~  389 (872)
                      +++|.+.+..   +..+++|++|++++|+
T Consensus       331 L~~N~l~~~~---~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          331 LDHNSIVTLK---LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred             CCCCCCCCcC---hhhcCCCCEEEeeCCC
Confidence            5555554321   3334455555555553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.6e-32  Score=299.44  Aligned_cols=310  Identities=19%  Similarity=0.174  Sum_probs=242.2

Q ss_pred             CCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEE
Q 002875           64 SLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHM  143 (872)
Q Consensus        64 ~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L  143 (872)
                      .+.++++|++++|.+....+..|..+++|++|+|++|.+.+..+..|+.+++|++|+|++|.+++..|..++.+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46899999999999986655568999999999999999998888899999999999999999999889999999999999


Q ss_pred             EccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCc
Q 002875          144 EIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS  223 (872)
Q Consensus       144 ~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  223 (872)
                      ++++|.+....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            9999998865555578999999999999999988888899999999999999999875   3677899999999999987


Q ss_pred             CcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCC
Q 002875          224 GPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDIC  303 (872)
Q Consensus       224 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~  303 (872)
                      +     +...++|+.|++++|.+... |..  ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+ 
T Consensus       200 ~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~-  268 (390)
T 3o6n_A          200 T-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF-  268 (390)
T ss_dssp             E-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-
T ss_pred             c-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc-
Confidence            4     33456899999999999854 332  357999999999999864  578889999999999999876555444 


Q ss_pred             CCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccc
Q 002875          304 SGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYF  383 (872)
Q Consensus       304 ~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  383 (872)
                                             ..+++|+.|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|++|
T Consensus       269 -----------------------~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          269 -----------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  323 (390)
T ss_dssp             -----------------------TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             -----------------------cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence                                   445556666666666554 2334455566666666666655 344445555666666


Q ss_pred             cccCCCCCCCcCCcccCCCcccccccccccccC
Q 002875          384 NVSNNPKLGGMIPAQTWSLPSLQNFSASACNIT  416 (872)
Q Consensus       384 ~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~  416 (872)
                      ++++|+.. . +  ....+++|+.|++++|.+.
T Consensus       324 ~L~~N~i~-~-~--~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          324 YLDHNSIV-T-L--KLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             ECCSSCCC-C-C--CCCTTCCCSEEECCSSCEE
T ss_pred             ECCCCccc-e-e--CchhhccCCEEEcCCCCcc
Confidence            66666432 1 1  1334556666666666543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.8e-33  Score=311.63  Aligned_cols=231  Identities=19%  Similarity=0.138  Sum_probs=170.0

Q ss_pred             hhhhccCCCCCceeeee-cCCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCC-CCce----------e--------
Q 002875          612 ECEEAARPQSAAGCKAV-LPTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRH-KNLI----------R--------  667 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~-~~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H-~niv----------~--------  667 (872)
                      ..+.||+|+||.||+|+ ..+|+.||||++....    ...+.+.+|+.+++.++| +|..          .        
T Consensus        82 ~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (413)
T 3dzo_A           82 RGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQ  161 (413)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC
T ss_pred             EecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCC
Confidence            67889999999999999 5789999999987322    235678899999999987 3221          1        


Q ss_pred             ---EEEEEec-----CCeeEEEEcccCCCChHHHhh---------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCC
Q 002875          668 ---LLGFCYN-----RHQAYLLYDYLPNGNLSEKIR---------TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL  730 (872)
Q Consensus       668 ---l~~~~~~-----~~~~~lv~ey~~~g~L~~~l~---------~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdl  730 (872)
                         +..++..     ....+++|+++ +|+|.+++.         ...++..+..++.|+++||+|||+.   +|+||||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iiHrDi  237 (413)
T 3dzo_A          162 KKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYL  237 (413)
T ss_dssp             ---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEECSCC
T ss_pred             CCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCc
Confidence               1111111     12457777766 579999984         1235678889999999999999999   9999999


Q ss_pred             CCCCeeeCCCCCeeEccccccccccccCCCCcccccccCchhhh----------cccCCcccccchhHHHHHHHHHcCCC
Q 002875          731 KASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFY----------NAMKEEMYMDVYGFGEIILEILTNGR  800 (872)
Q Consensus       731 k~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~----------~~~~~~~~~Dv~S~Gvil~el~tg~~  800 (872)
                      ||+|||++.++.+||+|||+++....... ...+ ..|++||++          ....++.++|||||||++|||+||+.
T Consensus       238 Kp~NILl~~~~~~kL~DFG~a~~~~~~~~-~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~  315 (413)
T 3dzo_A          238 RPVDIVLDQRGGVFLTGFEHLVRDGASAV-SPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADL  315 (413)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEETTEEEC-CCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccceEEEecCCeEEEEeccceeecCCccc-cCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCC
Confidence            99999999999999999999876544322 2234 667888887          44557789999999999999999999


Q ss_pred             CCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHH
Q 002875          801 LTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK  862 (872)
Q Consensus       801 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~  862 (872)
                      ||........      ........ .       .....+.+++.+||+.||++|||+.|+++
T Consensus       316 Pf~~~~~~~~------~~~~~~~~-~-------~~~~~~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          316 PNTDDAALGG------SEWIFRSC-K-------NIPQPVRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             CCCTTGGGSC------SGGGGSSC-C-------CCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCCcchhhh------HHHHHhhc-c-------cCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            9875432111      11111111 1       11245778999999999999999888754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=1.5e-31  Score=313.00  Aligned_cols=310  Identities=17%  Similarity=0.137  Sum_probs=223.3

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      +..++.|++++|.+..+.+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            46677788888777776666677777888888888877777777777888888888888877777777777788888888


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      |++|.+.+..+..|+++++|++|+|++|.+++..|..++.+++|++|++++|.+.+.   .+..+++|+.|++++|.+.+
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence            888877765555667788888888888877777777777788888888877776653   24556777778887777764


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      .     ...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..+..
T Consensus       207 l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 L-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             E-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             c-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            2     33456777888877776544322   2567778888887775  356777778888888888877777777777


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEE
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR  336 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~  336 (872)
                      +++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+                        |..+..+++|+.|+
T Consensus       277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i------------------------~~~~~~l~~L~~L~  330 (597)
T 3oja_B          277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV------------------------ERNQPQFDRLENLY  330 (597)
T ss_dssp             CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CC------------------------GGGHHHHTTCSEEE
T ss_pred             ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-cc------------------------CcccccCCCCCEEE
Confidence            7888888888877775 4555666777777777777664 22                        22345567778888


Q ss_pred             cCCCccccccCccCCCCCCCcEEEcCCCcCCC
Q 002875          337 LEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG  368 (872)
Q Consensus       337 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  368 (872)
                      +++|.+++.   .+..+++|+.|++++|.+.+
T Consensus       331 L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          331 LDHNSIVTL---KLSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCCCCc---ChhhcCCCCEEEeeCCCCCC
Confidence            888877654   25667777788888877653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=1.8e-32  Score=293.48  Aligned_cols=250  Identities=27%  Similarity=0.384  Sum_probs=170.7

Q ss_pred             CCCCEEECcCCcCcc--cCCccccCCCCCcEEECcC-CcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 002875           42 TSLISLDISRNNFSG--HFPGGIQSLRNLLVLDAFS-NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF  118 (872)
Q Consensus        42 ~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~LdL~~-n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  118 (872)
                      .+++.|+|++|.+.+  .+|..|..+++|++|++++ |.+.+.+|..|.++++|++|+|++|.+.+..|..|+++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            355666666666655  5556666666666666663 5565556666666666666666666666556666666666666


Q ss_pred             eeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCC-CCcEEEeecCCCcccCCccCcCCCCCCEEEccCCC
Q 002875          119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMS-EVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ  197 (872)
Q Consensus       119 L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  197 (872)
                      |++++|.+++.+|..+..+++|++|++++|.+.+.+|..+.++. +|++|++++|.+.+.+|..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            66666666556666666666666666666666666666666666 677777777777777777777665 7777777777


Q ss_pred             CcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCcc
Q 002875          198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN  277 (872)
Q Consensus       198 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~  277 (872)
                      +.+..|..|..+++|+.|++++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            7777777777777777777777777655444 667777777777777777777777777777888888888777777765


Q ss_pred             CCCCCCCcEEecCCCee
Q 002875          278 LGRNSKLRWVDVSTNNF  294 (872)
Q Consensus       278 ~~~~~~L~~L~ls~n~l  294 (872)
                       ..+++|+.+++++|..
T Consensus       288 -~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             -TTGGGSCGGGTCSSSE
T ss_pred             -ccccccChHHhcCCCC
Confidence             6677777788887763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=3e-31  Score=289.42  Aligned_cols=305  Identities=26%  Similarity=0.344  Sum_probs=210.6

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCc
Q 002875           38 IFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLE  117 (872)
Q Consensus        38 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~  117 (872)
                      +..+++|++|++++|.+... + .+..+++|++|++++|.++...+  +..+++|++|++++|.+...  ..|.++++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            44566677777777666532 3 36666777777777776664322  66677777777777766542  2466777777


Q ss_pred             EeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCC
Q 002875          118 FLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQ  197 (872)
Q Consensus       118 ~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  197 (872)
                      +|++++|.+.+..+  +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            77777776654332  6666666666666664443333 26677777777777777764433  6677778888888777


Q ss_pred             CcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCcc
Q 002875          198 LAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPEN  277 (872)
Q Consensus       198 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~  277 (872)
                      +.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++.  +.
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  260 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA  260 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence            765433  6777778888888877765433  6777778888888887775433  67777788888877777653  34


Q ss_pred             CCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCc
Q 002875          278 LGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDIN  357 (872)
Q Consensus       278 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  357 (872)
                      +..+++|+.|++++|.+.+.                          +.+..+++|+.|++++|.+++..+..+..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI--------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             HhcCCCcCEEEccCCccCCC--------------------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            66677777777777766421                          2356678888888888888888888888888899


Q ss_pred             EEEcCCCcCCCCCCchhhhhcccccccccCCC
Q 002875          358 YIDLSRNGFTGGIPTDINQASKLEYFNVSNNP  389 (872)
Q Consensus       358 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~  389 (872)
                      +|++++|.+++..|  +..+++|++|++++|+
T Consensus       315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          315 TLFLSQNHITDIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             EEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred             EEEccCCccccccC--hhhhhccceeehhhhc
Confidence            99999988887655  7778888999998885

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=5.3e-31  Score=287.38  Aligned_cols=304  Identities=20%  Similarity=0.299  Sum_probs=256.5

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ++.|+.|++++|.+..+ + .+..+++|++|++++|.+.+..+  |..+++|++|++++|.+.. + .++.++++|++|+
T Consensus        43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~  116 (347)
T 4fmz_A           43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELY  116 (347)
T ss_dssp             HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEE
Confidence            78899999999999865 3 48899999999999999986543  9999999999999999985 3 3699999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      +++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+
T Consensus       117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred             CcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence            999999864 33 9999999999999997655444 48999999999999998776544  7889999999999999986


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      ..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|+.|++++|.+.+.  +.+..
T Consensus       192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~  263 (347)
T 4fmz_A          192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD  263 (347)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred             ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence            443  8889999999999999987654  8899999999999999986544  89999999999999999864  56889


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEE
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR  336 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~  336 (872)
                      +++|++|++++|.+++.  +.+..+++|+.|++++|.+.+..|                        ..+..+++|+.|+
T Consensus       264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~l~~l~~L~~L~  317 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM------------------------EVIGGLTNLTTLF  317 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH------------------------HHHHTCTTCSEEE
T ss_pred             CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh------------------------hHhhccccCCEEE
Confidence            99999999999999864  457788899999999888764332                        3456678888888


Q ss_pred             cCCCccccccCccCCCCCCCcEEEcCCCcCC
Q 002875          337 LEDNSFSGEIPLKFSQLPDINYIDLSRNGFT  367 (872)
Q Consensus       337 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  367 (872)
                      +++|++++..|  +..+++|++|++++|.++
T Consensus       318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          318 LSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCccccccC--hhhhhccceeehhhhccc
Confidence            88888887665  777888888888888775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=5.9e-32  Score=289.42  Aligned_cols=249  Identities=27%  Similarity=0.422  Sum_probs=208.3

Q ss_pred             CCCcEEECCCCCCcc--cCCccccCCCCCCEEECcC-CcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCE
Q 002875           18 NELVDLNLSHNSFSG--QFPVEIFNLTSLISLDISR-NNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKV   94 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~   94 (872)
                      ..++.|+|++|.+.+  .+|.+|.++++|++|+|++ |.+.+.+|..|..+++|++|++++|.+++.+|..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            468888888888887  7788888888888888884 8888888888888888888888888888788888888888888


Q ss_pred             EEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCC-CCCEEEccCccCcccCCccccCCCCCcEEEeecCC
Q 002875           95 LNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLK-TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGAN  173 (872)
Q Consensus        95 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~  173 (872)
                      |+|++|.+.+..|..|+++++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..+. |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            88888888888888888888888888888888878888888887 888888888888888888888776 8888888888


Q ss_pred             CcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCcc
Q 002875          174 LSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPES  253 (872)
Q Consensus       174 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  253 (872)
                      +.+..|..+..+++|+.|++++|.+++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            8888888888888888888888888766654 777888888888888888788888888888888888888888777765


Q ss_pred             ccCCCCcceeeccccc
Q 002875          254 LVQLPSLEILFIWNNY  269 (872)
Q Consensus       254 l~~l~~L~~L~l~~n~  269 (872)
                       ..+++|+.+++++|.
T Consensus       288 -~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNK  302 (313)
T ss_dssp             -TTGGGSCGGGTCSSS
T ss_pred             -ccccccChHHhcCCC
Confidence             778888888888887

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=2e-33  Score=304.86  Aligned_cols=241  Identities=12%  Similarity=0.126  Sum_probs=178.6

Q ss_pred             hhcCcchhhhccCCCCCceeeeecCCCcEEEEEEeeccch---------hHHHHHHHHHHhhccC---------CCCcee
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT---------RIKIVSEFITRIGTVR---------HKNLIR  667 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~---------~~~~~~~e~~~l~~l~---------H~niv~  667 (872)
                      +.|.  ..+.||+|+||.||+|+. +|+.||||++.....         ..+.+.+|+.++++++         |||||+
T Consensus        20 ~~y~--~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           20 EKLQ--RCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             HHHH--TCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             ccch--heeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            3455  889999999999999987 889999999975421         2367888999988885         888888


Q ss_pred             EEEEEe------------------------------cCCeeEEEEcccCCCChHHHhh-CCCCHHHHHHHHHHHHHHHHH
Q 002875          668 LLGFCY------------------------------NRHQAYLLYDYLPNGNLSEKIR-TKRDWAAKYKIVLGVARGLCF  716 (872)
Q Consensus       668 l~~~~~------------------------------~~~~~~lv~ey~~~g~L~~~l~-~~~~~~~~~~i~~~i~~gl~~  716 (872)
                      +.+++.                              +.+..|+|||||++|++.+.+. ...++.+...++.|++.||+|
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~  176 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAV  176 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            877643                              2678999999999997666554 456889999999999999999


Q ss_pred             Hh-hCCCCCcccCCCCCCCeeeCCCC--------------------CeeEccccccccccccCCCCcccccccCchhhhc
Q 002875          717 LH-HDCYPAIPHGDLKASNIVFDENM--------------------EPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYN  775 (872)
Q Consensus       717 lH-~~~~~~i~Hrdlk~~Nill~~~~--------------------~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~  775 (872)
                      || +.   +|+||||||+|||++.++                    .+||+|||+++.....   ...++..|++||.+.
T Consensus       177 lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~---~~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          177 AEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG---IVVFCDVSMDEDLFT  250 (336)
T ss_dssp             HHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT---EEECCCCTTCSGGGC
T ss_pred             HHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC---cEEEeecccChhhhc
Confidence            99 88   999999999999999887                    8999999999865432   223556688889887


Q ss_pred             ccCCcccccchhHHHH-HHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCC
Q 002875          776 AMKEEMYMDVYGFGEI-ILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDR  854 (872)
Q Consensus       776 ~~~~~~~~Dv~S~Gvi-l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R  854 (872)
                      +.. +.++||||+|++ .+++++|..||.+.... ............... ....+.......++.+++.+||+.|    
T Consensus       251 g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~dli~~~L~~d----  323 (336)
T 2vuw_A          251 GDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWL-HYLTDKMLKQMTFKT-KCNTPAMKQIKRKIQEFHRTMLNFS----  323 (336)
T ss_dssp             CCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHH-HHHHHHHHHTCCCSS-CCCSHHHHHHHHHHHHHHHHGGGSS----
T ss_pred             CCC-ccceehhhhhCCCCcccccccCCCcchhhh-hHHHHhhhhhhccCc-ccchhhhhhcCHHHHHHHHHHhccC----
Confidence            655 789999998776 77888888877421000 000000000100111 1112223556778999999999976    


Q ss_pred             CCHHHHH-HH
Q 002875          855 PSMEEAL-KL  863 (872)
Q Consensus       855 pt~~~v~-~~  863 (872)
                       |++|++ ++
T Consensus       324 -sa~e~l~~H  332 (336)
T 2vuw_A          324 -SATDLLCQH  332 (336)
T ss_dssp             -SHHHHHHHC
T ss_pred             -CHHHHHhcC
Confidence             999998 54

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.5e-29  Score=273.59  Aligned_cols=250  Identities=23%  Similarity=0.310  Sum_probs=171.5

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .++.++++++.+.. +|..+.  ++|++|+|++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|+|+
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            57788888888764 455454  578888888888887777778888888888888888887777788888888888888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcc--cCCccccCCCCCcEEEeecCCCcc
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG--NIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      +|.+.. +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+..  ..+..+.++++|++|++++|.+..
T Consensus       109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            888773 455443  678888888888877666667777777777777776642  455566666777777777776663


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                       +|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++. .+|..+..
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence             443332  56666666666666666666666666666666666666555556666666666666666665 45555666


Q ss_pred             CCCcceeecccccccccCCccC
Q 002875          257 LPSLEILFIWNNYFSGSLPENL  278 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~  278 (872)
                      +++|++|++++|.+++..+..|
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCCcCEEECCCCcCCccChhhc
Confidence            6666666666666655444333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.1e-29  Score=271.14  Aligned_cols=296  Identities=20%  Similarity=0.261  Sum_probs=205.6

Q ss_pred             CCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEee
Q 002875           41 LTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH  120 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  120 (872)
                      ..++++++++++.+.. +|..+.  ++|++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|+++++|++|+
T Consensus        30 ~c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EEETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            3478899999998874 555443  6889999999999887777899999999999999999888888999999999999


Q ss_pred             CccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc--cCCccCcCCCCCCEEEccCCCC
Q 002875          121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG--SIPKELSNLTKLESLFLFRNQL  198 (872)
Q Consensus       121 L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l  198 (872)
                      +++|.++. +|..+.  ++|++|++++|.+.+..+..+.++++|+.|++++|.+..  ..+..+..+++|++|++++|.+
T Consensus       107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          107 LSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            99998874 454443  677888888877776666667777778888887777743  5666677777777777777777


Q ss_pred             cccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccC
Q 002875          199 AGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL  278 (872)
Q Consensus       199 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~  278 (872)
                      ... |..+.  ++|++|++++|++++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+
T Consensus       184 ~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          184 TTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             ccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            643 32222  57777777777777666677777777777777777777666666777777777777777776 566666


Q ss_pred             CCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCcccc--ccCccCCCCCCC
Q 002875          279 GRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSG--EIPLKFSQLPDI  356 (872)
Q Consensus       279 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L  356 (872)
                      ..+++|++|++++|.+++.-+..++...                  .....+.++.|++++|.+..  ..|..|..++++
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l  321 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  321 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccce
Confidence            6667777777777766532222221100                  01123556666666666542  334455555556


Q ss_pred             cEEEcCCC
Q 002875          357 NYIDLSRN  364 (872)
Q Consensus       357 ~~L~Ls~N  364 (872)
                      +.+++++|
T Consensus       322 ~~l~L~~N  329 (330)
T 1xku_A          322 AAVQLGNY  329 (330)
T ss_dssp             GGEEC---
T ss_pred             eEEEeccc
Confidence            66665555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=9.9e-30  Score=275.17  Aligned_cols=288  Identities=23%  Similarity=0.275  Sum_probs=246.2

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .++.++++++.+.. +|..+.  ++|++|+|++|.+.+..|+.|..+++|++|++++|.+++..|..|.++++|++|+|+
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccc-cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            68999999999974 566564  689999999999998888899999999999999999998889999999999999999


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCc--ccCCccccCCCCCcEEEeecCCCcc
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQ--GNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      +|.+. .+|..+.  ++|++|++++|.++...+..+..+++|+.|++++|.+.  +..|..+..+ +|++|++++|.+.+
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            99998 4565554  89999999999998887788999999999999999885  3667777777 99999999999986


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                       +|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++. .+|..+..
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence             565554  78999999999999888888999999999999999999888888999999999999999998 67888999


Q ss_pred             CCCcceeecccccccccCCccCCC------CCCCcEEecCCCeee--ecCCCCCCCCCceeEEEcCCCc
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGR------NSKLRWVDVSTNNFN--GSIPPDICSGGVLFKLILFSNN  317 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~------~~~L~~L~ls~n~l~--~~~p~~~~~~~~l~~l~l~~n~  317 (872)
                      +++|+.|++++|.+++..+..|..      ...++.+++++|.+.  +..|..+.....++.+.+.+|+
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            999999999999999776666654      357899999999886  3444556667778888887764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.9e-29  Score=273.02  Aligned_cols=295  Identities=24%  Similarity=0.271  Sum_probs=240.8

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeC
Q 002875           42 TSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL  121 (872)
Q Consensus        42 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  121 (872)
                      .+++.+++++|.+. .+|..+  .++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..|..|+++++|++|++
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            37999999999987 456555  368999999999999888889999999999999999999888999999999999999


Q ss_pred             ccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCc--ccCCccCcCCCCCCEEEccCCCCc
Q 002875          122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS--GSIPKELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       122 ~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~  199 (872)
                      ++|.++. +|..+.  ++|++|++++|.+.+..+..+.++++|+.|++++|.+.  +..+..+..+ +|+.|++++|+++
T Consensus       110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            9999974 555544  78999999999888777777889999999999999985  4677778877 8999999999988


Q ss_pred             ccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCC
Q 002875          200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG  279 (872)
Q Consensus       200 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~  279 (872)
                      +. |..+.  ++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|.++ .+|..+.
T Consensus       186 ~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          186 GI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             SC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             cc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            64 43333  68899999999998887788999999999999999998887778888999999999999988 6787888


Q ss_pred             CCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccc--cccCccCCCCCCCc
Q 002875          280 RNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFS--GEIPLKFSQLPDIN  357 (872)
Q Consensus       280 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~  357 (872)
                      .+++|+.|++++|.+++.-+..++...                +  ....+.|+.|++++|.+.  +..|..|..+++|+
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~----------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVG----------------F--GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSS----------------C--CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             cCccCCEEECCCCCCCccChhHccccc----------------c--ccccccccceEeecCcccccccCcccccccchhh
Confidence            889999999999988743333222110                0  012467889999999887  66778888999999


Q ss_pred             EEEcCCCc
Q 002875          358 YIDLSRNG  365 (872)
Q Consensus       358 ~L~Ls~N~  365 (872)
                      .+++++|+
T Consensus       324 ~l~l~~n~  331 (332)
T 2ft3_A          324 AIQFGNYK  331 (332)
T ss_dssp             TEEC----
T ss_pred             hhhccccc
Confidence            99998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=6.5e-33  Score=315.24  Aligned_cols=353  Identities=16%  Similarity=0.174  Sum_probs=241.4

Q ss_pred             CCCCcEEECCCCCCcccCCcc-ccCCCCCCEEECcCCcCcc----cCCccccCCCCCcEEECcCCcCccccCccc-cCCC
Q 002875           17 FNELVDLNLSHNSFSGQFPVE-IFNLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFSNSFSGSVPAEI-SQLE   90 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~-~~L~   90 (872)
                      .+.|+.|+|++|+++...... |..+++|++|+|++|.+..    .++..+..+++|++||+++|.+....+..+ ..+.
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            356899999999997655444 7789999999999999874    346778889999999999999886555444 3455


Q ss_pred             ----CCCEEEccCCcccc----cCCcccCCCCCCcEeeCccCcCCccCCccC-----CCCCCCCEEEccCccCccc----
Q 002875           91 ----HLKVLNLAGSYFSG----PIPSQFGSFKSLEFLHLAGNLLNDQIPAEL-----GMLKTVTHMEIGYNFYQGN----  153 (872)
Q Consensus        91 ----~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~L~~L~~L~l~~n~~~~~----  153 (872)
                          +|++|+|++|.+..    .++..|..+++|++|+|++|.+++..+..+     ...++|++|++++|.+...    
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                79999999999884    558889999999999999999865433332     3356788888888877653    


Q ss_pred             CCccccCCCCCcEEEeecCCCcccCCccCc-----CCCCCCEEEccCCCCccc----CCcccccCCCCCEEeCcCCCCcC
Q 002875          154 IPWQLGNMSEVQYLDIAGANLSGSIPKELS-----NLTKLESLFLFRNQLAGQ----VPWEFSRVTTLKSLDLSDNRLSG  224 (872)
Q Consensus       154 ~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~  224 (872)
                      ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.++.
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            345556678888888888887654443332     255788888888877753    34556677888888888887764


Q ss_pred             cC-----CccccCCCCCCEEEcccccCCCC----CCccccCCCCcceeecccccccccCCccCC-----CCCCCcEEecC
Q 002875          225 PI-----PESFADLKNLRLLSLMYNEMSGT----VPESLVQLPSLEILFIWNNYFSGSLPENLG-----RNSKLRWVDVS  290 (872)
Q Consensus       225 ~~-----~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~-----~~~~L~~L~ls  290 (872)
                      ..     +..+..+++|+.|++++|.++..    ++..+..+++|++|++++|.+.+..+..+.     ..++|+.|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            32     22334577788888888877653    455566677788888888777643322221     22467777777


Q ss_pred             CCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCC-----CCCCCcEEEcCCCc
Q 002875          291 TNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFS-----QLPDINYIDLSRNG  365 (872)
Q Consensus       291 ~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~  365 (872)
                      +|.+++....                    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.
T Consensus       322 ~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          322 SCSFTAACCS--------------------HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             TSCCBGGGHH--------------------HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             CCCCchHHHH--------------------HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            7766532100                    0223344556777777777776654333222     15677777777777


Q ss_pred             CCC----CCCchhhhhcccccccccCCC
Q 002875          366 FTG----GIPTDINQASKLEYFNVSNNP  389 (872)
Q Consensus       366 l~~----~~~~~~~~l~~L~~L~ls~n~  389 (872)
                      +++    .++..+..+++|++|++++|+
T Consensus       382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          382 VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            664    455566666777777777774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3e-28  Score=266.01  Aligned_cols=276  Identities=21%  Similarity=0.224  Sum_probs=221.9

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      +...+.+.++|.++.+ |..+.  ++|++|++++|.+.+..++.|..+++|++|++++|.+++..|..|.++++|++|+|
T Consensus        31 ~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           31 DRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             CTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            3455689999999754 55555  58999999999999877778999999999999999999888888999999999999


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCC-ccCCCCCCCCEEEccCc-cCcccCCccccCCCCCcEEEeecCCCc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP-AELGMLKTVTHMEIGYN-FYQGNIPWQLGNMSEVQYLDIAGANLS  175 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~L~ls~n~l~  175 (872)
                      ++|.+++..+..|+++++|++|++++|.++...+ ..+..+++|++|++++| .+....+..+.++++|++|++++|.+.
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            9999987655668999999999999999986554 47889999999999988 456566777888999999999999999


Q ss_pred             ccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCcccc---CCCCCCEEEcccccCCC----
Q 002875          176 GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFA---DLKNLRLLSLMYNEMSG----  248 (872)
Q Consensus       176 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~n~l~~----  248 (872)
                      +..|..+..+++|++|++++|.+....+..+..+++|++|++++|++++..+..+.   ....++.++++.+.+.+    
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence            88888999999999999999998755444456688999999999998876544433   35667888888887765    


Q ss_pred             CCCccccCCCCcceeecccccccccCCcc-CCCCCCCcEEecCCCeeeec
Q 002875          249 TVPESLVQLPSLEILFIWNNYFSGSLPEN-LGRNSKLRWVDVSTNNFNGS  297 (872)
Q Consensus       249 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~ls~n~l~~~  297 (872)
                      .+|+.+..+++|+.|++++|+++. +|.. +..+++|++|++++|.+.+.
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCc
Confidence            256667778888888888888874 4444 57788888888888877654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.1e-27  Score=257.66  Aligned_cols=225  Identities=24%  Similarity=0.309  Sum_probs=142.0

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ...++.|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..|..+++|++|+|++|.+. .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            356777777777776 45666777777777777777777 66777777777777777777776 5677777777777777


Q ss_pred             ccCCcccccCCcccCC---------CCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEE
Q 002875           97 LAGSYFSGPIPSQFGS---------FKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYL  167 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  167 (872)
                      |++|.+.+.+|..++.         +++|++|+|++|.++ .                        +|..+.++++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~------------------------lp~~l~~l~~L~~L  211 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S------------------------LPASIANLQNLKSL  211 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-C------------------------CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-c------------------------chHhhcCCCCCCEE
Confidence            7777766667766543         555555555555554 3                        44444555555555


Q ss_pred             EeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC
Q 002875          168 DIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       168 ~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      ++++|.+.+ +|..+..+++|++|++++|.+.+.+|..|..+++|++|++++|++.+.+|..+..+++|+.|++++|++.
T Consensus       212 ~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             EEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             EccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            555555553 3444555555555555555555555555555556666666665555555555566666666666666655


Q ss_pred             CCCCccccCCCCcceeecccccc
Q 002875          248 GTVPESLVQLPSLEILFIWNNYF  270 (872)
Q Consensus       248 ~~~p~~l~~l~~L~~L~l~~n~l  270 (872)
                      +.+|+.+..+++|+.+++..+.+
T Consensus       291 ~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          291 SRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hhccHHHhhccCceEEeCCHHHH
Confidence            56666666666666665555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=9.8e-32  Score=305.49  Aligned_cols=356  Identities=17%  Similarity=0.174  Sum_probs=266.4

Q ss_pred             CCCCEEECcCCcCcccCCcc-ccCCCCCcEEECcCCcCcc----ccCccccCCCCCCEEEccCCcccccCCccc-CCCC-
Q 002875           42 TSLISLDISRNNFSGHFPGG-IQSLRNLLVLDAFSNSFSG----SVPAEISQLEHLKVLNLAGSYFSGPIPSQF-GSFK-  114 (872)
Q Consensus        42 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~LdL~~n~l~~----~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~-~~l~-  114 (872)
                      ++|++|||++|++....... |..+++|++|++++|.+..    .++..+..+++|++|+|++|.+....+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            57899999999987654333 7889999999999999874    346678889999999999999876444333 2344 


Q ss_pred             ---CCcEeeCccCcCCc----cCCccCCCCCCCCEEEccCccCcccCCccc-----cCCCCCcEEEeecCCCcccC----
Q 002875          115 ---SLEFLHLAGNLLND----QIPAELGMLKTVTHMEIGYNFYQGNIPWQL-----GNMSEVQYLDIAGANLSGSI----  178 (872)
Q Consensus       115 ---~L~~L~L~~n~l~~----~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~ls~n~l~~~~----  178 (872)
                         +|++|+|++|.++.    .++..+..+++|++|++++|.+....+..+     ...++|++|++++|.+.+..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               79999999999974    458889999999999999998764333322     23567999999999888643    


Q ss_pred             CccCcCCCCCCEEEccCCCCcccCCcccc-----cCCCCCEEeCcCCCCcCc----CCccccCCCCCCEEEcccccCCCC
Q 002875          179 PKELSNLTKLESLFLFRNQLAGQVPWEFS-----RVTTLKSLDLSDNRLSGP----IPESFADLKNLRLLSLMYNEMSGT  249 (872)
Q Consensus       179 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~  249 (872)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.++..    ++..+..+++|+.|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            55566778999999999988754333332     356899999999988763    466777889999999999987653


Q ss_pred             C-----CccccCCCCcceeeccccccccc----CCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCC
Q 002875          250 V-----PESLVQLPSLEILFIWNNYFSGS----LPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTG  320 (872)
Q Consensus       250 ~-----p~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~  320 (872)
                      .     +..+..+++|++|++++|.++..    ++..+..+++|+.|++++|.+.+..+..+..                
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~----------------  306 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE----------------  306 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH----------------
Confidence            2     22233578899999999988764    5666667888899999888875332111100                


Q ss_pred             CCCCCCCCCCCCcEEEcCCCccccc----cCccCCCCCCCcEEEcCCCcCCCCCCchhhh-----hcccccccccCCCCC
Q 002875          321 SLSPSLSNCSSLVRLRLEDNSFSGE----IPLKFSQLPDINYIDLSRNGFTGGIPTDINQ-----ASKLEYFNVSNNPKL  391 (872)
Q Consensus       321 ~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~ls~n~~l  391 (872)
                         ......++|+.|++++|.+++.    ++..+..+++|++|++++|.+....+..+..     .++|++|++++|. +
T Consensus       307 ---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i  382 (461)
T 1z7x_W          307 ---TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-V  382 (461)
T ss_dssp             ---HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-C
T ss_pred             ---HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-C
Confidence               0012346899999999999865    4556677899999999999987544444433     5699999999995 3


Q ss_pred             CC----cCCcccCCCcccccccccccccCC
Q 002875          392 GG----MIPAQTWSLPSLQNFSASACNITG  417 (872)
Q Consensus       392 ~~----~~~~~~~~l~~L~~L~l~~~~l~~  417 (872)
                      ..    .++..+..+++|++|++++|.++.
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            32    456666678999999999998864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.5e-28  Score=256.92  Aligned_cols=279  Identities=20%  Similarity=0.241  Sum_probs=193.7

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccc--cCccccCCCCCCEEEcc
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS--VPAEISQLEHLKVLNLA   98 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~--~p~~~~~L~~L~~L~L~   98 (872)
                      +.++.+++.++.+ |..+.  ++|++|+|++|.+....++.|..+++|++|++++|.+...  .|..+..+++|++|+|+
T Consensus        10 ~~l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            4677777777643 44443  5777777777777755555577777777777777777632  25566667777777777


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCC-ccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc-
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP-AELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG-  176 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~-  176 (872)
                      +|.+.. +|..|..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ 
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            777763 55567777777777777777765544 567777777777777777777677777777788888888877765 


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      ..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|..+..
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            56777777788888888888887777777777788888888888887766667777888888888888887777777777


Q ss_pred             CC-CcceeecccccccccCCc--cCCCCCCCcEEecCCCeeeecCCCCCC
Q 002875          257 LP-SLEILFIWNNYFSGSLPE--NLGRNSKLRWVDVSTNNFNGSIPPDIC  303 (872)
Q Consensus       257 l~-~L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~ls~n~l~~~~p~~~~  303 (872)
                      ++ +|++|++++|.+.+..+.  ....+...+.+.+..+.+....|..+.
T Consensus       246 ~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             CCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             hhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence            74 788888888877653211  011122233344555566555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.3e-28  Score=264.69  Aligned_cols=259  Identities=19%  Similarity=0.180  Sum_probs=225.6

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      .+.|++|+|++|.++++.+..|.++++|++|+|++|.+.+..|+.|..+++|++||+++|.+++..+..|.++++|++|+
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            46899999999999998888999999999999999999998899999999999999999999976666699999999999


Q ss_pred             ccCCcccccCC-cccCCCCCCcEeeCccC-cCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCC
Q 002875           97 LAGSYFSGPIP-SQFGSFKSLEFLHLAGN-LLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL  174 (872)
Q Consensus        97 L~~n~~~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l  174 (872)
                      |++|.+....+ ..|.++++|++|++++| .+....+..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            99999986444 48999999999999999 57777788999999999999999999998899999999999999999999


Q ss_pred             cccCCccCcCCCCCCEEEccCCCCcccCCcccc---cCCCCCEEeCcCCCCcC----cCCccccCCCCCCEEEcccccCC
Q 002875          175 SGSIPKELSNLTKLESLFLFRNQLAGQVPWEFS---RVTTLKSLDLSDNRLSG----PIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       175 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      ....+..+..+++|+.|++++|.+++..+..+.   ....++.++++++.+++    .+|..+..+++|+.|++++|+++
T Consensus       211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence            754444455689999999999999976654433   45678899999998875    36778899999999999999999


Q ss_pred             CCCCccccCCCCcceeecccccccccCC
Q 002875          248 GTVPESLVQLPSLEILFIWNNYFSGSLP  275 (872)
Q Consensus       248 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p  275 (872)
                      ...+..+..+++|++|++++|.+.+..|
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            5444446899999999999999986544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.8e-27  Score=251.84  Aligned_cols=262  Identities=19%  Similarity=0.226  Sum_probs=160.9

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCccc--CCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGH--FPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      +.|++|+|++|.++.+.+..|.++++|++|+|++|.+...  .+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            4566666666666655555566666666777666666532  2445556666666666666665 345556666666677


Q ss_pred             EccCCcccccCC-cccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcc-cCCccccCCCCCcEEEeecCC
Q 002875           96 NLAGSYFSGPIP-SQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG-NIPWQLGNMSEVQYLDIAGAN  173 (872)
Q Consensus        96 ~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~ls~n~  173 (872)
                      ++++|.+.+..+ ..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            666666665443 456666666666666666666666666666666666666666654 456666666666666666666


Q ss_pred             CcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCC-CCCEEEcccccCCCCCC-
Q 002875          174 LSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLK-NLRLLSLMYNEMSGTVP-  251 (872)
Q Consensus       174 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p-  251 (872)
                      +.+..|..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..|..+..++ +|+.|++++|++....+ 
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            6666666666666666666666666666555666666666666666666666666666663 66666666666654321 


Q ss_pred             -ccccCCCCcceeecccccccccCCccCCC
Q 002875          252 -ESLVQLPSLEILFIWNNYFSGSLPENLGR  280 (872)
Q Consensus       252 -~~l~~l~~L~~L~l~~n~l~~~~p~~~~~  280 (872)
                       .....+...+.+.+..+.+....|..+.+
T Consensus       267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          267 QSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             HHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             HHHHHHHHhhhhhhccccccccCCchhhCC
Confidence             11122233333444445555445554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.1e-26  Score=262.47  Aligned_cols=246  Identities=20%  Similarity=0.200  Sum_probs=145.2

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS  100 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n  100 (872)
                      +.++.+++.++. +|..+.  ++|++|+|++|+|.+..++.|..+++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus        57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            445555555543 233333  35555555555555555555555555555555555555555555555555555555555


Q ss_pred             cccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCC-CcccCC
Q 002875          101 YFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGAN-LSGSIP  179 (872)
Q Consensus       101 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p  179 (872)
                      .+....+..|..+++|++|+|++|.++...+..                        +.++++|+.|++++|+ +....+
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA------------------------FNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT------------------------TTTCTTCCEEECCCCTTCCEECT
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhH------------------------HhcCCcccEEeCCCCCCccccCh
Confidence            555444444555555555555555554444444                        4455555555555532 222223


Q ss_pred             ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCC
Q 002875          180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS  259 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  259 (872)
                      ..+..+++|++|++++|.+++. | .+..+++|++|+|++|++++..|..|..+++|+.|++++|++.+..+..+..+++
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  267 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS  267 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence            3456666666666666666643 2 3566667777777777776666666777777777777777777666666777777


Q ss_pred             cceeecccccccccCCccCCCCCCCcEEecCCCeee
Q 002875          260 LEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN  295 (872)
Q Consensus       260 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~  295 (872)
                      |+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus       268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            777777777777666666667777777777777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=260.08  Aligned_cols=248  Identities=20%  Similarity=0.203  Sum_probs=145.8

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      .+.++.+++.++. +|..+.  ++++.|+|++|+|....+..|..+++|++|+|++|.+....+..|.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4456666666653 344443  4566666666666666666666666666666666666655556666666666666666


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      |.++...+..|..+++|++|+|++|.++...+..|..+++|++|++++|..                       +....+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~i~~  178 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR-----------------------LSYISE  178 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-----------------------CCEECT
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC-----------------------cceeCc
Confidence            666655555566666666666666666555444555555555555544322                       222222


Q ss_pred             ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCC
Q 002875          180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS  259 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  259 (872)
                      ..|..+++|++|++++|.++.. | .+..+++|++|+|++|++++..|..|..+++|+.|++++|++.+..+..|..+++
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             chhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence            3445555555555555555532 2 2455556666666666666555556666666666666666666555555666666


Q ss_pred             cceeecccccccccCCccCCCCCCCcEEecCCCeee
Q 002875          260 LEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN  295 (872)
Q Consensus       260 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~  295 (872)
                      |+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus       257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            666666666666555555666666666666666664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.5e-27  Score=252.97  Aligned_cols=236  Identities=19%  Similarity=0.232  Sum_probs=206.7

Q ss_pred             CCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEe
Q 002875           40 NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFL  119 (872)
Q Consensus        40 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  119 (872)
                      ..+++++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..|+++++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3578889999999887 56777888889999999998888 78888888889999999998888 678888888899999


Q ss_pred             eCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCc
Q 002875          120 HLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       120 ~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  199 (872)
                      +|++|.+.+.+|..+...               .++..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus       156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            998888777777655421               12334567899999999999998 78999999999999999999999


Q ss_pred             ccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCC
Q 002875          200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLG  279 (872)
Q Consensus       200 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~  279 (872)
                      + +|..+..+++|++|++++|++.+.+|..++.+++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..++
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            6 455799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEecCCCeee
Q 002875          280 RNSKLRWVDVSTNNFN  295 (872)
Q Consensus       280 ~~~~L~~L~ls~n~l~  295 (872)
                      .+++++.++++.+.+.
T Consensus       299 ~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          299 QLPANCIILVPPHLQA  314 (328)
T ss_dssp             GSCTTCEEECCGGGSC
T ss_pred             hccCceEEeCCHHHHH
Confidence            9999999999987664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.2e-26  Score=262.13  Aligned_cols=229  Identities=22%  Similarity=0.207  Sum_probs=167.6

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      .+.++.|+|++|+|+++.+.+|.++++|++|+|++|.|.++.+..|.++++|++|+|++|.++...+..|..+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999987777899999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccC-cCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGN-LLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS  175 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~  175 (872)
                      |++|.+....+..|.++++|++|++++| .+....+..+..+++|++|++++|.+.+                       
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----------------------  210 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----------------------  210 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-----------------------
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-----------------------
Confidence            9999999888889999999999999985 4443333445555555555555554442                       


Q ss_pred             ccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCcccc
Q 002875          176 GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV  255 (872)
Q Consensus       176 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  255 (872)
                       . | .+..+++|+.|+|++|.+.+..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+.
T Consensus       211 -~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          211 -M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             -C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             -c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence             2 2 244455555555555555555555555555555555555555555555555555555555555555554445555


Q ss_pred             CCCCcceeeccccccc
Q 002875          256 QLPSLEILFIWNNYFS  271 (872)
Q Consensus       256 ~l~~L~~L~l~~n~l~  271 (872)
                      .+++|+.|++++|.+.
T Consensus       288 ~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          288 PLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCEE
T ss_pred             cccCCCEEEccCCCcC
Confidence            5556666666665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.9e-27  Score=247.03  Aligned_cols=255  Identities=22%  Similarity=0.225  Sum_probs=196.6

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      -+.++.+++.+..+ |..+  .++|++|+|++|.+.+..++.|..+++|++|++++|.+++..|..|.++++|++|+|++
T Consensus        13 ~~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            47888999888754 5444  36899999999999988888899999999999999999888788899999999999999


Q ss_pred             Cc-ccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875          100 SY-FSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus       100 n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      |. +....|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            97 77766888999999999999999998877888888888888888888777666666777888888888888887666


Q ss_pred             CccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCC
Q 002875          179 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP  258 (872)
Q Consensus       179 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  258 (872)
                      +..+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++....+.. .-..
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~  248 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA  248 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence            666777888888888888888777777777888888888888887766666777888888888888776432210 0112


Q ss_pred             CcceeecccccccccCCccC
Q 002875          259 SLEILFIWNNYFSGSLPENL  278 (872)
Q Consensus       259 ~L~~L~l~~n~l~~~~p~~~  278 (872)
                      .++.+..+.+.+....|..+
T Consensus       249 ~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             HHHHCCSEECCCBEEESGGG
T ss_pred             HHHhcccccCccccCCchHh
Confidence            23334445555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.9e-26  Score=259.50  Aligned_cols=229  Identities=23%  Similarity=0.227  Sum_probs=166.5

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      .+.++.|+|++|+|+.+.+.+|.++++|++|+|++|.|.++.++.|.++++|++|+|++|.++...+..|..+++|++|+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            46899999999999999999999999999999999999998889999999999999999999987777899999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCc-CCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNL-LNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS  175 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~  175 (872)
                      |++|.+....+..|.++++|++|+|++|. +....+..|..+++|++|++++|.+.. +|                    
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~--------------------  201 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP--------------------  201 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC--------------------
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc--------------------
Confidence            99999998888899999999999999854 544444456666666666666665442 22                    


Q ss_pred             ccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCcccc
Q 002875          176 GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV  255 (872)
Q Consensus       176 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  255 (872)
                           .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+.
T Consensus       202 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          202 -----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             -----CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             -----ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence                 234444555555555555554455555555555555555555555555555555555555555555544444455


Q ss_pred             CCCCcceeeccccccc
Q 002875          256 QLPSLEILFIWNNYFS  271 (872)
Q Consensus       256 ~l~~L~~L~l~~n~l~  271 (872)
                      .+++|+.|++++|.+.
T Consensus       277 ~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          277 PLHHLERIHLHHNPWN  292 (440)
T ss_dssp             SCTTCCEEECCSSCEE
T ss_pred             cccCCCEEEcCCCCcc
Confidence            5555555555555543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.95  E-value=8.8e-29  Score=284.55  Aligned_cols=181  Identities=14%  Similarity=0.060  Sum_probs=126.0

Q ss_pred             ccCCCCCceeeee-cCCCcEEEEEEeeccc-----------hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          616 AARPQSAAGCKAV-LPTGITVSVKKIEWGA-----------TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       616 ~g~g~~~~v~~~~-~~~g~~vavK~~~~~~-----------~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      .+.|+.|.++++. ...|+.||||++....           ...+.+.+|+++|+++ .|+||+++++++++++..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            3455555555543 3579999999996531           1245789999999999 6999999999999999999999


Q ss_pred             cccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          683 DYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       683 ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      ||++||+|.++|........ .+|+.||+.||+|+|++   +||||||||+|||+++++.+||+|||+|+........  
T Consensus       322 Eyv~G~~L~d~i~~~~~l~~-~~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~  397 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGEEIDR-EKILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPT  397 (569)
T ss_dssp             ECCCSEEHHHHHHTTCCCCH-HHHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSH
T ss_pred             ecCCCCcHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCCCcccc
Confidence            99999999999987654433 35899999999999999   9999999999999999999999999999865433222  


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCC
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRL  801 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p  801 (872)
                      ...++..|++||...+ .+..++|+||.|++++++.++..+
T Consensus       398 t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          398 NLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             HHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             CceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence            1225667788888765 356678999999999888776544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.9e-27  Score=246.16  Aligned_cols=239  Identities=19%  Similarity=0.181  Sum_probs=210.1

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCc-CccccCccccCCCCCCEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS-FSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~-l~~~~p~~~~~L~~L~~L   95 (872)
                      .+.|+.|+|++|.++.+.+..|..+++|++|+|++|.+.+..|..|..+++|++|++++|. +....|..|..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            5689999999999999988999999999999999999999889999999999999999997 877778899999999999


Q ss_pred             EccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCc
Q 002875           96 NLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS  175 (872)
Q Consensus        96 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~  175 (872)
                      ++++|.+.+..|..|.++++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+.++++|+.|++++|.+.
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            99999999888999999999999999999999888888999999999999999998777777999999999999999999


Q ss_pred             ccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCcccc
Q 002875          176 GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV  255 (872)
Q Consensus       176 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  255 (872)
                      +..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.. .-...++.+..+.+.+....|..+.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence            999999999999999999999999877777999999999999999987543211 0111233444566777666666554


Q ss_pred             C
Q 002875          256 Q  256 (872)
Q Consensus       256 ~  256 (872)
                      .
T Consensus       270 g  270 (285)
T 1ozn_A          270 G  270 (285)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=9.2e-28  Score=257.57  Aligned_cols=258  Identities=22%  Similarity=0.213  Sum_probs=166.9

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .++.++++.+.+.......+..+++|++|+|++|.+.+..|+.|..+++|++|++++|.+++..|  +..+++|++|+|+
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            35556666666665555556666677777777777776666677777777777777777765443  6777777777777


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+++..     ..++|++|++++|.+++..+..   +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            77766432     2367777777777776544432   455666777666666655556666667777777777766655


Q ss_pred             CccC-cCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCC
Q 002875          179 PKEL-SNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL  257 (872)
Q Consensus       179 p~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  257 (872)
                      +..+ ..+++|++|++++|.+++..+  ...+++|++|++++|++++. |..+..+++|+.|++++|+++ .+|..+..+
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            5554 356667777777777665522  22366677777777776643 334666677777777777666 345556666


Q ss_pred             CCcceeeccccccc-ccCCccCCCCCCCcEEecC
Q 002875          258 PSLEILFIWNNYFS-GSLPENLGRNSKLRWVDVS  290 (872)
Q Consensus       258 ~~L~~L~l~~n~l~-~~~p~~~~~~~~L~~L~ls  290 (872)
                      ++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            77777777777666 5556666666666666666

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.5e-27  Score=255.40  Aligned_cols=249  Identities=19%  Similarity=0.163  Sum_probs=151.9

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCc-cccCcccc-------CCCCCCEEEccCCcccccCCcc
Q 002875           38 IFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS-GSVPAEIS-------QLEHLKVLNLAGSYFSGPIPSQ  109 (872)
Q Consensus        38 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~-~~~p~~~~-------~L~~L~~L~L~~n~~~~~~p~~  109 (872)
                      +...++|++|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|+|++|.+.+..|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34455566666666665  344444332  555566666552 23444333       4566666666666666555555


Q ss_pred             c--CCCCCCcEeeCccCcCCccCCccCCCC-----CCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCccc--CCc
Q 002875          110 F--GSFKSLEFLHLAGNLLNDQIPAELGML-----KTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS--IPK  180 (872)
Q Consensus       110 ~--~~l~~L~~L~L~~n~l~~~~p~~l~~L-----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~--~p~  180 (872)
                      +  +.+++|++|+|++|.+++. |..++.+     ++|++|++++|.+.+..|..+.++++|++|++++|.+.+.  .|.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            4  5666666666666666554 5555444     5666666666666655556666666666666666666543  233


Q ss_pred             cC--cCCCCCCEEEccCCCCccc---CCcccccCCCCCEEeCcCCCCcCcCC-ccccCCCCCCEEEcccccCCCCCCccc
Q 002875          181 EL--SNLTKLESLFLFRNQLAGQ---VPWEFSRVTTLKSLDLSDNRLSGPIP-ESFADLKNLRLLSLMYNEMSGTVPESL  254 (872)
Q Consensus       181 ~l--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l  254 (872)
                      .+  ..+++|++|++++|++++.   ....+..+++|++|++++|++++..| ..+..+++|+.|++++|+++ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            33  5667777777777777621   12234566777777777777776553 44556677777777777776 555555


Q ss_pred             cCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeee
Q 002875          255 VQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG  296 (872)
Q Consensus       255 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~  296 (872)
                      .  ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            4  6777777777777755 44 6777777777777777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.7e-27  Score=254.97  Aligned_cols=245  Identities=19%  Similarity=0.234  Sum_probs=166.1

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCc-ccCCcccc-------CCCCCcEEECcCCcCccccCccc--c
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFS-GHFPGGIQ-------SLRNLLVLDAFSNSFSGSVPAEI--S   87 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~-------~l~~L~~LdL~~n~l~~~~p~~~--~   87 (872)
                      +.|+.|++++|.+  .+|..+...  |++|+|++|.+. ...|..+.       .+++|++|++++|.+++..|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            3466777777777  455555533  777777777773 34454444       57777777777777777677665  7


Q ss_pred             CCCCCCEEEccCCcccccCCcccCCC-----CCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCccc--CCccc--
Q 002875           88 QLEHLKVLNLAGSYFSGPIPSQFGSF-----KSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGN--IPWQL--  158 (872)
Q Consensus        88 ~L~~L~~L~L~~n~~~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~--~p~~~--  158 (872)
                      .+++|++|+|++|.+.+. |..|+.+     ++|++|+|++|.+.+..|..++.+++|++|++++|.+.+.  +|..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            777777777777777765 6666666     7777777777777777767777777777777777766543  22233  


Q ss_pred             cCCCCCcEEEeecCCCcc--cCC-ccCcCCCCCCEEEccCCCCcccCC-cccccCCCCCEEeCcCCCCcCcCCccccCCC
Q 002875          159 GNMSEVQYLDIAGANLSG--SIP-KELSNLTKLESLFLFRNQLAGQVP-WEFSRVTTLKSLDLSDNRLSGPIPESFADLK  234 (872)
Q Consensus       159 ~~l~~L~~L~ls~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  234 (872)
                      .++++|++|++++|.+.+  .++ ..+..+++|++|++++|++.+..| ..+..+++|++|++++|+++ .+|..+.  +
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~  274 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A  274 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence            667777777777777762  112 233466777777777777776654 34555677777777777776 4555554  6


Q ss_pred             CCCEEEcccccCCCCCCccccCCCCcceeecccccccc
Q 002875          235 NLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSG  272 (872)
Q Consensus       235 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  272 (872)
                      +|+.|++++|++++. |. +..+++|++|++++|.+++
T Consensus       275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            777777777777755 44 6777777777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=4.5e-29  Score=293.06  Aligned_cols=328  Identities=13%  Similarity=0.082  Sum_probs=161.0

Q ss_pred             CccccCCCCCCEEECcCCcCc---ccCCcccc------------CCCCCcEEECcCCcCccccCccccCC--CCCCEEEc
Q 002875           35 PVEIFNLTSLISLDISRNNFS---GHFPGGIQ------------SLRNLLVLDAFSNSFSGSVPAEISQL--EHLKVLNL   97 (872)
Q Consensus        35 ~~~~~~l~~L~~L~Ls~N~i~---~~~~~~~~------------~l~~L~~LdL~~n~l~~~~p~~~~~L--~~L~~L~L   97 (872)
                      +..+..+++|++|+|+++...   +..|..++            .+++|++|+|++|.++...+..+..+  .+|++|+|
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            334456667777777664321   22222222            56677777777776665555555442  33777777


Q ss_pred             cCCcc-cc-cCCcccCCCCCCcEeeCccCcCCcc----CCccCCCCCCCCEEEccCccCc----ccCCccccCCCCCcEE
Q 002875           98 AGSYF-SG-PIPSQFGSFKSLEFLHLAGNLLNDQ----IPAELGMLKTVTHMEIGYNFYQ----GNIPWQLGNMSEVQYL  167 (872)
Q Consensus        98 ~~n~~-~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~L~~L~~L~l~~n~~~----~~~p~~~~~l~~L~~L  167 (872)
                      ++|.. .. .++....++++|++|+|++|.+++.    ++..+..+++|++|++++|.+.    +.++..+.++++|+.|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            76651 10 1122223566777777777765443    2222344555666666555544    1223334455666666


Q ss_pred             EeecCCCcccCCccCcCCCCCCEEEccCCCCc---ccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccc
Q 002875          168 DIAGANLSGSIPKELSNLTKLESLFLFRNQLA---GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN  244 (872)
Q Consensus       168 ~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n  244 (872)
                      ++++|.+.+ +|..+..+++|++|+++.....   ...+..+..+++|+.|+++++.. ..+|..+..+++|+.|++++|
T Consensus       226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred             eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence            666665554 4455555666666666532211   11223344555566666555422 234445555556666666665


Q ss_pred             cCCCCCC-ccccCCCCcceeecccccccccCCccCCCCCCCcEEecCC-----------CeeeecCCCCCCCCCceeEEE
Q 002875          245 EMSGTVP-ESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST-----------NNFNGSIPPDICSGGVLFKLI  312 (872)
Q Consensus       245 ~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~-----------n~l~~~~p~~~~~~~~l~~l~  312 (872)
                      .+++... ..+..+++|+.|+++++...+.++.....+++|+.|++++           |.+++.               
T Consensus       304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~---------------  368 (592)
T 3ogk_B          304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR---------------  368 (592)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH---------------
T ss_pred             cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH---------------
Confidence            5432221 2234555666666652222222222223344555555552           121110               


Q ss_pred             cCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCC-CCCCcEEEcC----CCcCCCC-----CCchhhhhccccc
Q 002875          313 LFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQ-LPDINYIDLS----RNGFTGG-----IPTDINQASKLEY  382 (872)
Q Consensus       313 l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~  382 (872)
                              .+......+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|++
T Consensus       369 --------~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~  440 (592)
T 3ogk_B          369 --------GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR  440 (592)
T ss_dssp             --------HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             --------HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence                    00011234566777777666666554444443 6666666664    4455432     1122334555555


Q ss_pred             ccccC
Q 002875          383 FNVSN  387 (872)
Q Consensus       383 L~ls~  387 (872)
                      |++++
T Consensus       441 L~L~~  445 (592)
T 3ogk_B          441 FAFYL  445 (592)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            55543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2e-26  Score=247.19  Aligned_cols=246  Identities=20%  Similarity=0.168  Sum_probs=214.6

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      .+.|+.|+|++|.++++.|..|.++++|++|+|++|.+.+..+  |..+++|++|++++|.+++..     ..++|++|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence            4689999999999999988999999999999999999987654  999999999999999988533     348999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccc-cCCCCCcEEEeecCCCc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQL-GNMSEVQYLDIAGANLS  175 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~ls~n~l~  175 (872)
                      +++|.+.+..+..   +++|++|++++|.+++..+..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.++
T Consensus       106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            9999998765543   6789999999999999888899999999999999999988776666 47899999999999998


Q ss_pred             ccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC-CCCCccc
Q 002875          176 GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS-GTVPESL  254 (872)
Q Consensus       176 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l  254 (872)
                      +. + ....+++|++|++++|++++..+ .+..+++|++|++++|+++. +|..+..+++|+.|++++|++. +.+|..+
T Consensus       183 ~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          183 DV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             EE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             cc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            66 2 33458999999999999997655 58999999999999999984 6778999999999999999998 6778888


Q ss_pred             cCCCCcceeecccc-cccccCCc
Q 002875          255 VQLPSLEILFIWNN-YFSGSLPE  276 (872)
Q Consensus       255 ~~l~~L~~L~l~~n-~l~~~~p~  276 (872)
                      ..+++|+.|+++++ .+.+..|.
T Consensus       259 ~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          259 SKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             HTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             hccccceEEECCCchhccCCchh
Confidence            99999999999844 45554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=1.6e-28  Score=288.29  Aligned_cols=400  Identities=17%  Similarity=0.092  Sum_probs=281.3

Q ss_pred             CCCCcEEECCCCCCc---ccCCcccc------------CCCCCCEEECcCCcCcccCCccccCC--CCCcEEECcCCc-C
Q 002875           17 FNELVDLNLSHNSFS---GQFPVEIF------------NLTSLISLDISRNNFSGHFPGGIQSL--RNLLVLDAFSNS-F   78 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~---~~~~~~~~------------~l~~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~LdL~~n~-l   78 (872)
                      ++.|+.|+|+++...   +..|..+.            .+++|++|+|++|.+.+..+..+...  .+|++|++++|. +
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence            788999999875421   23333332            78999999999998876666666553  449999999886 2


Q ss_pred             cc-ccCccccCCCCCCEEEccCCccccc----CCcccCCCCCCcEeeCccCcCCc----cCCccCCCCCCCCEEEccCcc
Q 002875           79 SG-SVPAEISQLEHLKVLNLAGSYFSGP----IPSQFGSFKSLEFLHLAGNLLND----QIPAELGMLKTVTHMEIGYNF  149 (872)
Q Consensus        79 ~~-~~p~~~~~L~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~L~~L~~L~l~~n~  149 (872)
                      +. .++....++++|++|+|++|.+.+.    ++..+..+++|++|++++|.+++    .++..+..+++|+.|++++|.
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            21 1222335789999999999988654    33345678999999999999873    344456678999999999988


Q ss_pred             CcccCCccccCCCCCcEEEeecCCCc---ccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcC
Q 002875          150 YQGNIPWQLGNMSEVQYLDIAGANLS---GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPI  226 (872)
Q Consensus       150 ~~~~~p~~~~~l~~L~~L~ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  226 (872)
                      +.+ +|..+.++++|+.|+++.....   +..+..+..+++|+.|+++.+.. ..+|..+..+++|++|++++|.+++..
T Consensus       232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED  309 (592)
T ss_dssp             GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred             HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence            775 6677889999999999864433   33445677889999999987643 345667788999999999999976543


Q ss_pred             C-ccccCCCCCCEEEcccccCCCCCCccccCCCCcceeeccc-----------cccccc-CCccCCCCCCCcEEecCCCe
Q 002875          227 P-ESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWN-----------NYFSGS-LPENLGRNSKLRWVDVSTNN  293 (872)
Q Consensus       227 ~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-----------n~l~~~-~p~~~~~~~~L~~L~ls~n~  293 (872)
                      . ..+..+++|+.|+++.+-....++.....+++|++|++++           |.+++. ++.....+++|+.|+++.|.
T Consensus       310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  389 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD  389 (592)
T ss_dssp             HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred             HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence            3 3468899999999983322223334446688999999993           555533 22223457889999998888


Q ss_pred             eeecCCCCCCC-CCceeEEEcC----CCcCCCC-----CCCCCCCCCCCcEEEcCCCc--cccccCccCC-CCCCCcEEE
Q 002875          294 FNGSIPPDICS-GGVLFKLILF----SNNFTGS-----LSPSLSNCSSLVRLRLEDNS--FSGEIPLKFS-QLPDINYID  360 (872)
Q Consensus       294 l~~~~p~~~~~-~~~l~~l~l~----~n~~~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~-~l~~L~~L~  360 (872)
                      +++..+..+.. ..+|+.|.+.    .|.+++.     ++..+.++++|+.|++++|.  +++.....+. .+++|++|+
T Consensus       390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~  469 (592)
T 3ogk_B          390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML  469 (592)
T ss_dssp             CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred             ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence            87654433333 5578888885    5566543     22235668899999997543  5544433333 478899999


Q ss_pred             cCCCcCCC-CCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCC
Q 002875          361 LSRNGFTG-GIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN  418 (872)
Q Consensus       361 Ls~N~l~~-~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~  418 (872)
                      +++|.+++ .++..+..+++|++|++++|+.....++.....+++|+.|++++|.++..
T Consensus       470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            99998764 23344566788999999999632222333444678899999999887653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.1e-25  Score=255.53  Aligned_cols=233  Identities=25%  Similarity=0.240  Sum_probs=114.0

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .|+.|+|++|.++++.|..|..+++|++|+|++|.+.+..|  |..+++|++|||++|.+++..+     .++|++|+|+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            45555555555555444555555555555555555544332  5555555555555555443211     1455555555


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+.+..+.   .+++|++|+|++|.+++..|..+                        +++++|++|++++|.+.+..
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~------------------------~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE------------------------GCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG------------------------GGGSSEEEEECTTSCCCEEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh------------------------cCCCCCCEEECCCCCCCCcC
Confidence            5555443332   23445555555555544444444                        44455555555555555444


Q ss_pred             CccCc-CCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCC
Q 002875          179 PKELS-NLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL  257 (872)
Q Consensus       179 p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  257 (872)
                      |..+. .+++|+.|+|++|.+++..+  +..+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l  236 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFS  236 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred             hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccC
Confidence            44443 44555555555555544422  2234555555555555554322 24555555555555555553 34445555


Q ss_pred             CCcceeeccccccc-ccCCccCCCCCCCcEEec
Q 002875          258 PSLEILFIWNNYFS-GSLPENLGRNSKLRWVDV  289 (872)
Q Consensus       258 ~~L~~L~l~~n~l~-~~~p~~~~~~~~L~~L~l  289 (872)
                      ++|+.|++++|.+. +.+|..+..++.++.+++
T Consensus       237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            55555555555554 344444444545554444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.5e-26  Score=257.97  Aligned_cols=235  Identities=18%  Similarity=0.177  Sum_probs=186.4

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeC
Q 002875           42 TSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHL  121 (872)
Q Consensus        42 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  121 (872)
                      ++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|  |..+++|++|+|++|.+.+..+     .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            377888888888777777777778888888888877776544  7777777777777777765322     267777777


Q ss_pred             ccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCccc
Q 002875          122 AGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQ  201 (872)
Q Consensus       122 ~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  201 (872)
                      ++|.+++..                        +   ..+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++.
T Consensus       107 ~~N~l~~~~------------------------~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A          107 ANNNISRVS------------------------C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             CSSCCCCEE------------------------E---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcCCCCC------------------------c---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence            777665422                        1   1346789999999999998898999999999999999999998


Q ss_pred             CCcccc-cCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCC
Q 002875          202 VPWEFS-RVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGR  280 (872)
Q Consensus       202 ~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~  280 (872)
                      .|..+. .+++|++|+|++|.+++..  .+..+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~  235 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRF  235 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             ChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhcc
Confidence            888776 7999999999999998763  34469999999999999997544 58899999999999999996 6778999


Q ss_pred             CCCCcEEecCCCeee-ecCCCCCCCCCceeEEEcC
Q 002875          281 NSKLRWVDVSTNNFN-GSIPPDICSGGVLFKLILF  314 (872)
Q Consensus       281 ~~~L~~L~ls~n~l~-~~~p~~~~~~~~l~~l~l~  314 (872)
                      +++|+.|++++|.+. +.+|..+.....+..+.+.
T Consensus       236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            999999999999997 5555555555555555553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=6.5e-24  Score=223.02  Aligned_cols=222  Identities=23%  Similarity=0.248  Sum_probs=147.3

Q ss_pred             EEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCc
Q 002875           22 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSY  101 (872)
Q Consensus        22 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~  101 (872)
                      ..+-++..+. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|+|++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            4455555554 3344443  467788888887777666677777888888888887776666677777888888888887


Q ss_pred             ccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcc-cCCccccCCCCCcEEEeecCCCcccCCc
Q 002875          102 FSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG-NIPWQLGNMSEVQYLDIAGANLSGSIPK  180 (872)
Q Consensus       102 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~  180 (872)
                      +.+..+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            777777777778888888888777776655566666666666666666554 2466666666777777777766665555


Q ss_pred             cCcCCCCCC----EEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC
Q 002875          181 ELSNLTKLE----SLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       181 ~l~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      .+..+++|+    +|++++|.+.+..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            555544444    6666666666555444433 35666666666666555555566666666666666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.9e-23  Score=240.05  Aligned_cols=268  Identities=23%  Similarity=0.333  Sum_probs=184.3

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .++.|++++|.++ .+|..+.  ++|++|+|++|.|+. +|.   .+++|++|||++|.+++ +|.   .+++|++|+|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            5889999999987 4566565  789999999998874 444   57888889998888874 554   67888888888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+++ +|.   .+++|+.|++++|.++. +|..                           +++|++|++++|.+++ +
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---------------------------l~~L~~L~Ls~N~l~~-l  156 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---------------------------PPGLQELSVSDNQLAS-L  156 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---------------------------CTTCCEEECCSSCCSC-C
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---------------------------CCCCCEEECcCCcCCC-c
Confidence            888875 444   56788888888887764 2321                           2445555555555553 2


Q ss_pred             CccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCC
Q 002875          179 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP  258 (872)
Q Consensus       179 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  258 (872)
                      |.   .+++|+.|++++|.+++. |   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++. +|.   .++
T Consensus       157 ~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~  221 (622)
T 3g06_A          157 PA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPS  221 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCT
T ss_pred             CC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCC
Confidence            32   234566666666666643 2   345667777777777764 332   23567777777777763 332   236


Q ss_pred             CcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcC
Q 002875          259 SLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLE  338 (872)
Q Consensus       259 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~  338 (872)
                      +|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.                           .+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---------------------------~~~~L~~L~Ls  269 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---------------------------LPSGLLSLSVY  269 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---------------------------CCTTCCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---------------------------ccccCcEEeCC
Confidence            77777777777764 44   33466777777777665 2221                           34678889999


Q ss_pred             CCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhc
Q 002875          339 DNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQAS  378 (872)
Q Consensus       339 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  378 (872)
                      +|+++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus       270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            99888 5677888899999999999999877776666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=3.1e-23  Score=239.84  Aligned_cols=256  Identities=25%  Similarity=0.319  Sum_probs=172.7

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCc
Q 002875           43 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLA  122 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  122 (872)
                      ++++|++++|.++ .+|..+.  ++|++|++++|.++. +|.   .+++|++|+|++|.+++ +|.   .+++|++|+|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            4667777777766 3444443  566666666666663 343   35666666666666653 333   45566666666


Q ss_pred             cCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccC
Q 002875          123 GNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV  202 (872)
Q Consensus       123 ~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  202 (872)
                      +|.+++                         +|.   .+++|+.|++++|.+++ +|..   +++|++|++++|++++. 
T Consensus       110 ~N~l~~-------------------------l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-  156 (622)
T 3g06_A          110 SNPLTH-------------------------LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-  156 (622)
T ss_dssp             SCCCCC-------------------------CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-
T ss_pred             CCcCCC-------------------------CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-
Confidence            665542                         121   34567777788777774 4443   47788888888888754 


Q ss_pred             CcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCC
Q 002875          203 PWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNS  282 (872)
Q Consensus       203 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~  282 (872)
                      |.   .+++|+.|++++|.++. +|   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++. +|..   .+
T Consensus       157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~---~~  221 (622)
T 3g06_A          157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL---PS  221 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC---CT
T ss_pred             CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC---CC
Confidence            32   34678888888888875 44   446778888888888774 333   23677777777777763 3332   35


Q ss_pred             CCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcC
Q 002875          283 KLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLS  362 (872)
Q Consensus       283 ~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  362 (872)
                      +|+.|++++|.++                        + +|   ..+++|+.|++++|+++. +|.   .+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~------------------------~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          222 GLKELIVSGNRLT------------------------S-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVY  269 (622)
T ss_dssp             TCCEEECCSSCCS------------------------C-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred             CCCEEEccCCccC------------------------c-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCC
Confidence            5666666666554                        2 12   245789999999999985 444   67899999999


Q ss_pred             CCcCCCCCCchhhhhcccccccccCCCC
Q 002875          363 RNGFTGGIPTDINQASKLEYFNVSNNPK  390 (872)
Q Consensus       363 ~N~l~~~~~~~~~~l~~L~~L~ls~n~~  390 (872)
                      +|+++ .+|..+..+++|+.|++++|+.
T Consensus       270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          270 RNQLT-RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             SSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred             CCCCC-cCCHHHhhccccCEEEecCCCC
Confidence            99999 6788899999999999999964

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=6.4e-24  Score=223.06  Aligned_cols=208  Identities=24%  Similarity=0.237  Sum_probs=188.5

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      .+.|++|+|++|.++++.+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|+
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            35799999999999999888999999999999999999988888999999999999999999988888999999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCcc-CCccCCCCCCCCEEEccCccCcccCCccccCCCCCc----EEEeec
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQ-IPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ----YLDIAG  171 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~----~L~ls~  171 (872)
                      +++|.+.+..+..|+++++|++|++++|.+++. +|..++.+++|++|++++|.+.+..+..+..+.+|+    .|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            999999988777899999999999999999874 589999999999999999999887777777666666    899999


Q ss_pred             CCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCc
Q 002875          172 ANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGP  225 (872)
Q Consensus       172 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  225 (872)
                      |.+.+..+..+. ..+|+.|++++|++++..+..|..+++|++|++++|++...
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            999976666555 45899999999999988877789999999999999998753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=9.8e-23  Score=213.04  Aligned_cols=203  Identities=23%  Similarity=0.298  Sum_probs=146.2

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      ..+.++++++.++. +|..+.  ++|++|+|++|.+.+..+..|..+++|++|++++|.++...+..|.++++|++|+|+
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            56788888888875 455454  578888888888887777778888888888888888876655567788888888888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+.+..+..|.++++|++|++++|.+++..+..|+                        ++++|++|++++|.+.+..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------~l~~L~~L~Ls~n~l~~~~  149 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD------------------------SLTKLTYLSLGYNELQSLP  149 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC------------------------cCcCCCEEECCCCcCCccC
Confidence            8888776667778888888888888877665544444                        4555555555556555544


Q ss_pred             CccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCC
Q 002875          179 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG  248 (872)
Q Consensus       179 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (872)
                      +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++..
T Consensus       150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            4556666777777777777766666666777777777777777776555667777777777777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-22  Score=211.23  Aligned_cols=203  Identities=25%  Similarity=0.288  Sum_probs=157.9

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCc
Q 002875           43 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLA  122 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  122 (872)
                      +.+++++++|.++. +|..+.  ++|+.|++++|.+.+..+..|.++++|++|+|++|.+....+..|.++++|++|+|+
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            45667777777663 444332  456677777776665555566666666666666666665555555666666666666


Q ss_pred             cCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccC
Q 002875          123 GNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV  202 (872)
Q Consensus       123 ~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  202 (872)
                      +|.++..                        .+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus        94 ~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  149 (270)
T 2o6q_A           94 DNKLQAL------------------------PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP  149 (270)
T ss_dssp             SSCCCCC------------------------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCcC------------------------CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence            6665433                        3344566777888888888888878888999999999999999999888


Q ss_pred             CcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccc
Q 002875          203 PWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSG  272 (872)
Q Consensus       203 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  272 (872)
                      +..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+..
T Consensus       150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            8789999999999999999998878889999999999999999998777778999999999999998864

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.90  E-value=2.7e-24  Score=245.90  Aligned_cols=178  Identities=13%  Similarity=0.129  Sum_probs=139.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch---------hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT---------RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~---------~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|. ..++.+|+|+......         ..+.+.+|++++++++|||||++..++...+..|+||
T Consensus       340 ~~~~LG~G~fg~Vy~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDS-YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             --------CCEEEEEEE-CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCCEEeeCCCEEEEEEE-ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            46789999999999994 4688899998643211         1345789999999999999997666766777889999


Q ss_pred             cccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          683 DYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      |||++|+|.+++..      +..++.|+++||+|||+.   +|+||||||+|||++.  .+||+|||+++.......   
T Consensus       419 E~~~ggsL~~~l~~------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~  487 (540)
T 3en9_A          419 SYINGKLAKDVIED------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAV  487 (540)
T ss_dssp             ECCCSEEHHHHSTT------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHH
T ss_pred             ECCCCCCHHHHHHH------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCCcccccc
Confidence            99999999999986      568999999999999999   9999999999999998  999999999986543211   


Q ss_pred             ------CCcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCC
Q 002875          760 ------SFPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRL  801 (872)
Q Consensus       760 ------~~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p  801 (872)
                            ....++.+|++||++..  ..|+..+|+||..+-..|.+.++.+
T Consensus       488 ~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~r  537 (540)
T 3en9_A          488 DLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRAR  537 (540)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSC
T ss_pred             chhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence                  12236677888898875  4577778999999888888776544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.1e-23  Score=220.40  Aligned_cols=228  Identities=25%  Similarity=0.299  Sum_probs=158.7

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .+..+++..+.+...  .....+++|+.|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|+|+
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            455566666666543  3355677888888888877632  3477788888888888877642  367777888888888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+.+..+..|+++++|++|++++|.+++..+..++                        ++++|++|++++|.+.+..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------~l~~L~~L~L~~n~l~~~~  149 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD------------------------KLTNLTYLNLAHNQLQSLP  149 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc------------------------cCCCCCEEECCCCccCccC
Confidence            8877776666677778888888877777654444444                        4555555566666665555


Q ss_pred             CccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCC
Q 002875          179 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP  258 (872)
Q Consensus       179 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  258 (872)
                      +..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+       .++
T Consensus       150 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~  222 (272)
T 3rfs_A          150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCP  222 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTT
T ss_pred             HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCc
Confidence            5556666777777777777776666666777777777777777777666667777788888887777653       345


Q ss_pred             CcceeecccccccccCCccCCCCCC
Q 002875          259 SLEILFIWNNYFSGSLPENLGRNSK  283 (872)
Q Consensus       259 ~L~~L~l~~n~l~~~~p~~~~~~~~  283 (872)
                      +|+.|+++.|.++|.+|..++.+..
T Consensus       223 ~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          223 GIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHHHHHHHhCCCcccCcccccCC
Confidence            7788888888888888877766553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.4e-23  Score=214.62  Aligned_cols=226  Identities=22%  Similarity=0.279  Sum_probs=174.9

Q ss_pred             CCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           44 LISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        44 L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      +..+++..+.+...  ..+..+++|+.|++++|.+.. + ..+..+++|++|+|++|.+.+.  ..+..+++|++|++++
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            33445555555433  234556667777777776652 2 2466666777777777666542  3566666666666666


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCC
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP  203 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  203 (872)
                      |.+++.                        .+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++..+
T Consensus        95 n~l~~~------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  150 (272)
T 3rfs_A           95 NQLQSL------------------------PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK  150 (272)
T ss_dssp             SCCCCC------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCcc------------------------ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence            666543                        33445667778888888888887777788999999999999999998888


Q ss_pred             cccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCC
Q 002875          204 WEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSK  283 (872)
Q Consensus       204 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~  283 (872)
                      ..|..+++|++|++++|++++..+..|+.+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+.       ++.
T Consensus       151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~  223 (272)
T 3rfs_A          151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPG  223 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTT
T ss_pred             HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcH
Confidence            8889999999999999999988888899999999999999999988888899999999999999988754       446


Q ss_pred             CcEEecCCCeeeecCCCCCCCCC
Q 002875          284 LRWVDVSTNNFNGSIPPDICSGG  306 (872)
Q Consensus       284 L~~L~ls~n~l~~~~p~~~~~~~  306 (872)
                      +++++++.|.+.|.+|..++...
T Consensus       224 l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             THHHHHHHHHTGGGBBCTTSCBC
T ss_pred             HHHHHHHHHhCCCcccCcccccC
Confidence            89999999999999998876543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=9e-22  Score=207.45  Aligned_cols=200  Identities=21%  Similarity=0.196  Sum_probs=102.2

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ++.++.+++++|.++.+ |..+.  +++++|+|++|.+.+..+..|..+++|++|++++|.+++..+  ...+++|++|+
T Consensus         9 l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred             cCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence            44555555555555533 33332  455555555555555555555555555555555555553222  14455555555


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      |++|.+. .+|..+..+++|++|++++|.+++..+                        ..+.++++|++|++++|.+.+
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~------------------------~~~~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL------------------------GALRGLGELQELYLKGNELKT  138 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS------------------------STTTTCTTCCEEECTTSCCCC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH------------------------HHHcCCCCCCEEECCCCCCCc
Confidence            5555554 344445555555555555555443333                        333344444444555555544


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      ..+..+..+++|+.|+|++|+++...+..|..+++|++|+|++|+++ .+|..+..+.+|+.+++++|++.
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            44444455555555555555555444444555555555555555555 34444445555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=9.4e-22  Score=207.31  Aligned_cols=177  Identities=21%  Similarity=0.184  Sum_probs=133.6

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      .+.++.|+|++|.|+++.+..|.++++|++|+|++|.|.+..+  ...+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            4689999999999999999999999999999999999987544  389999999999999998 6788899999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      |++|.+++..|..|.++++|++|+|++|.++...+..|..+++|+.|++++|.+....+..+.++++|++|++++|.++ 
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence            9999999888889999999999999999998766666666666666665555554333333344444444444444444 


Q ss_pred             cCCccCcCCCCCCEEEccCCC
Q 002875          177 SIPKELSNLTKLESLFLFRNQ  197 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~  197 (872)
                      .+|..+..+++|+.|++++|.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccChhhcccccCCeEEeCCCC
Confidence            233333333344444444333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=5.5e-22  Score=203.35  Aligned_cols=196  Identities=15%  Similarity=0.169  Sum_probs=136.1

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCcEEECcCCc-CccccCccccCCCCCCEEEccC-CcccccCCcccCCCCCCcEee
Q 002875           43 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS-FSGSVPAEISQLEHLKVLNLAG-SYFSGPIPSQFGSFKSLEFLH  120 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~-l~~~~p~~~~~L~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~  120 (872)
                      +|++|++++|+++++.+..|..+++|++|++++|. ++.+.+..|.++++|++|++++ |.+.+..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            66677777777666666666667777777777765 6655555666677777777776 666665556666777777777


Q ss_pred             CccCcCCccCCccCCCCCCCC---EEEccCc-cCcccCCccccCCCCCc-EEEeecCCCcccCCccCcCCCCCCEEEccC
Q 002875          121 LAGNLLNDQIPAELGMLKTVT---HMEIGYN-FYQGNIPWQLGNMSEVQ-YLDIAGANLSGSIPKELSNLTKLESLFLFR  195 (872)
Q Consensus       121 L~~n~l~~~~p~~l~~L~~L~---~L~l~~n-~~~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~  195 (872)
                      +++|.+++ +|. +..+++|+   .|++++| .+.+..+..+.++++|+ .|++++|.+....+..+.. ++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            77776655 443 66666666   7777777 66655555677778888 8888888887433334444 7888888888


Q ss_pred             CC-CcccCCcccccC-CCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccc
Q 002875          196 NQ-LAGQVPWEFSRV-TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN  244 (872)
Q Consensus       196 n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n  244 (872)
                      |+ ++...+..|..+ ++|+.|++++|+++...+.   .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            84 887777778888 8888888888888754333   5677888888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=5.2e-26  Score=267.18  Aligned_cols=431  Identities=15%  Similarity=0.105  Sum_probs=236.7

Q ss_pred             cccCCCCCCEEECcCCcCcc---cCCc------------cccCCCCCcEEECcCCcCccccCcccc-CCCCCCEEEccCC
Q 002875           37 EIFNLTSLISLDISRNNFSG---HFPG------------GIQSLRNLLVLDAFSNSFSGSVPAEIS-QLEHLKVLNLAGS  100 (872)
Q Consensus        37 ~~~~l~~L~~L~Ls~N~i~~---~~~~------------~~~~l~~L~~LdL~~n~l~~~~p~~~~-~L~~L~~L~L~~n  100 (872)
                      .+..+++|++|+++++....   ..|.            .+..+++|++|++++|.+++..+..+. .+++|++|+|++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            34556677777777664211   1111            123566777777777776665555554 5677777777777


Q ss_pred             -ccccc-CCcccCCCCCCcEeeCccCcCCccCCccC----CCCCCCCEEEccCcc--Ccc-cCCccccCCCCCcEEEeec
Q 002875          101 -YFSGP-IPSQFGSFKSLEFLHLAGNLLNDQIPAEL----GMLKTVTHMEIGYNF--YQG-NIPWQLGNMSEVQYLDIAG  171 (872)
Q Consensus       101 -~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~L~~L~~L~l~~n~--~~~-~~p~~~~~l~~L~~L~ls~  171 (872)
                       .+... ++..+.++++|++|+|++|.+++..+..+    ..+++|+.|++++|.  +.. .++....++++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             33321 33334467777777777777655433333    355677777777664  110 1112223457778888877


Q ss_pred             CCCcccCCccCcCCCCCCEEEccCCC-------CcccCCcccccCCCCCEE-eCcCCCCcCcCCccccCCCCCCEEEccc
Q 002875          172 ANLSGSIPKELSNLTKLESLFLFRNQ-------LAGQVPWEFSRVTTLKSL-DLSDNRLSGPIPESFADLKNLRLLSLMY  243 (872)
Q Consensus       172 n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~  243 (872)
                      |...+.++..+..+++|+.|+++.+.       +.+. +..+.++++|+.| .+.+... ..++..+..+++|+.|++++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence            73323366666677777777754432       2222 2356677777777 4443322 23344445667788888887


Q ss_pred             ccCCCCC-CccccCCCCcceeecccccccc-cCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCC
Q 002875          244 NEMSGTV-PESLVQLPSLEILFIWNNYFSG-SLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGS  321 (872)
Q Consensus       244 n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~  321 (872)
                      |.+.+.. ...+..+++|+.|++++| +.. .++.....+++|+.|+++++.-.|.               ...+.++..
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~---------------~~~~~l~~~  362 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM---------------EPNVALTEQ  362 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCS---------------SCSSCCCHH
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccc---------------ccCCCCCHH
Confidence            7755322 222456778888888776 332 1222222456677777743210000               000111100


Q ss_pred             CCCCC-CCCCCCcEEEcCCCccccccCccCC-CCCCCcEEEcC--C----CcCCCCCC-----chhhhhcccccccccCC
Q 002875          322 LSPSL-SNCSSLVRLRLEDNSFSGEIPLKFS-QLPDINYIDLS--R----NGFTGGIP-----TDINQASKLEYFNVSNN  388 (872)
Q Consensus       322 ~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~~-----~~~~~l~~L~~L~ls~n  388 (872)
                      ....+ .++++|+.|.+..|.+++.....+. .+++|+.|+++  +    |.++....     ..+..+++|+.|+++++
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~  442 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL  442 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc
Confidence            00011 2367777777777777655444443 46777777777  3    44442211     11455677888888662


Q ss_pred             CCCCCcCCcccC-CCcccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCcc-cccccCcEEEccCccceecc
Q 002875          389 PKLGGMIPAQTW-SLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESV-SNCVELERIDLANNKLIGSI  466 (872)
Q Consensus       389 ~~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~  466 (872)
                        +.......+. .+++|+.|++++|.+++.                       ....+ .++++|++|+|++|.+++..
T Consensus       443 --l~~~~~~~l~~~~~~L~~L~L~~~~i~~~-----------------------~~~~l~~~~~~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          443 --LTDKVFEYIGTYAKKMEMLSVAFAGDSDL-----------------------GMHHVLSGCDSLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             --CCHHHHHHHHHHCTTCCEEEEESCCSSHH-----------------------HHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred             --ccHHHHHHHHHhchhccEeeccCCCCcHH-----------------------HHHHHHhcCCCcCEEECcCCCCcHHH
Confidence              2111111222 256777777777654321                       11111 45677888888888875443


Q ss_pred             ch-hccCCCCCCEEECCCCccccccCccc-cCCCCCcEEECcCCee
Q 002875          467 PE-VLARLPVLGVLDLSHNSLSGQIPAKF-GSCSSLTVLNVSFNDI  510 (872)
Q Consensus       467 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N~l  510 (872)
                      .. ....+++|+.|++++|+++......+ ..++.|+...+..+..
T Consensus       498 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          498 LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             HHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             HHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            33 34457788888888888754433334 4567777666665543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.1e-21  Score=201.14  Aligned_cols=196  Identities=15%  Similarity=0.185  Sum_probs=120.8

Q ss_pred             CCcEEECcCCcCccccCccccCCCCCCEEEccCCc-ccccCCcccCCCCCCcEeeCcc-CcCCccCCccCCCCCCCCEEE
Q 002875           67 NLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSY-FSGPIPSQFGSFKSLEFLHLAG-NLLNDQIPAELGMLKTVTHME  144 (872)
Q Consensus        67 ~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~L~~L~~L~  144 (872)
                      +|++|++++|.+++..+..|.++++|++|++++|. +....+..|.++++|++|++++ |.++...+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665555566666666666666665 6555555666666666666666 666655556666666666666


Q ss_pred             ccCccCcccCCccccCCCCCc---EEEeecC-CCcccCCccCcCCCCCC-EEEccCCCCcccCCcccccCCCCCEEeCcC
Q 002875          145 IGYNFYQGNIPWQLGNMSEVQ---YLDIAGA-NLSGSIPKELSNLTKLE-SLFLFRNQLAGQVPWEFSRVTTLKSLDLSD  219 (872)
Q Consensus       145 l~~n~~~~~~p~~~~~l~~L~---~L~ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  219 (872)
                      +++|.+.+ +|. +..+++|+   +|++++| .+.+..+..|..+++|+ +|++++|+++...+..|.. ++|++|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            66666554 443 55555555   6666666 66655555566666666 6666666666444444444 5666666666


Q ss_pred             CC-CcCcCCccccCC-CCCCEEEcccccCCCCCCccccCCCCcceeecccc
Q 002875          220 NR-LSGPIPESFADL-KNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNN  268 (872)
Q Consensus       220 N~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  268 (872)
                      |+ ++...+..|..+ ++|+.|++++|++++..+.   .+++|+.|++.++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            63 665555566666 6666666666666643222   4556666666544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=3.5e-25  Score=260.07  Aligned_cols=395  Identities=15%  Similarity=0.142  Sum_probs=245.2

Q ss_pred             CCCCcEEECCCCCCcc---cCCc------------cccCCCCCCEEECcCCcCcccCCcccc-CCCCCcEEECcCC-cCc
Q 002875           17 FNELVDLNLSHNSFSG---QFPV------------EIFNLTSLISLDISRNNFSGHFPGGIQ-SLRNLLVLDAFSN-SFS   79 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~---~~~~------------~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~LdL~~n-~l~   79 (872)
                      ++.|+.|+|+++....   ..|.            .+..+++|++|+|++|.+.+..+..+. .+++|++|++++| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            7899999999976321   1121            124688999999999998876666664 7899999999998 454


Q ss_pred             cc-cCccccCCCCCCEEEccCCcccccCCccc----CCCCCCcEeeCccCc--CCc-cCCccCCCCCCCCEEEccCccCc
Q 002875           80 GS-VPAEISQLEHLKVLNLAGSYFSGPIPSQF----GSFKSLEFLHLAGNL--LND-QIPAELGMLKTVTHMEIGYNFYQ  151 (872)
Q Consensus        80 ~~-~p~~~~~L~~L~~L~L~~n~~~~~~p~~~----~~l~~L~~L~L~~n~--l~~-~~p~~l~~L~~L~~L~l~~n~~~  151 (872)
                      .. ++..+.++++|++|+|++|.+++..+..+    ..+++|++|++++|.  +.. .++..+..+++|++|++++|...
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            32 34445689999999999999776544433    467799999999986  221 11112345699999999998544


Q ss_pred             ccCCccccCCCCCcEEEeecCC-------CcccCCccCcCCCCCCEE-EccCCCCcccCCcccccCCCCCEEeCcCCCCc
Q 002875          152 GNIPWQLGNMSEVQYLDIAGAN-------LSGSIPKELSNLTKLESL-FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS  223 (872)
Q Consensus       152 ~~~p~~~~~l~~L~~L~ls~n~-------l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  223 (872)
                      +.+|..+.++++|+.|+++.+.       +.+ ++..+.++++|+.| .+..... ..++..+..+++|++|++++|.++
T Consensus       225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~  302 (594)
T 2p1m_B          225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ  302 (594)
T ss_dssp             HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred             HHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence            4477778889999999976553       332 34467888999998 4443322 234444557889999999999876


Q ss_pred             CcC-CccccCCCCCCEEEcccccCCCC-CCccccCCCCcceeeccc---------ccccccCCccC-CCCCCCcEEecCC
Q 002875          224 GPI-PESFADLKNLRLLSLMYNEMSGT-VPESLVQLPSLEILFIWN---------NYFSGSLPENL-GRNSKLRWVDVST  291 (872)
Q Consensus       224 ~~~-~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~---------n~l~~~~p~~~-~~~~~L~~L~ls~  291 (872)
                      ... ...+..+++|+.|++++| +... ++.....+++|+.|++++         +.+++.....+ ..+++|+.|+++.
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~  381 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC  381 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence            432 233568899999999988 3321 222233578999999844         34433211112 2367788888877


Q ss_pred             CeeeecCCCCCC-CCCceeEEEcC--C----CcCCCCCC-----CCCCCCCCCcEEEcCCCccccccCccCCC-CCCCcE
Q 002875          292 NNFNGSIPPDIC-SGGVLFKLILF--S----NNFTGSLS-----PSLSNCSSLVRLRLEDNSFSGEIPLKFSQ-LPDINY  358 (872)
Q Consensus       292 n~l~~~~p~~~~-~~~~l~~l~l~--~----n~~~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~  358 (872)
                      |.+++..+..+. ..++|+.|.+.  +    +.++....     ..+..+++|+.|++++ .+++.....+.. +++|+.
T Consensus       382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~  460 (594)
T 2p1m_B          382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM  460 (594)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred             CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence            777643322221 23456666665  2    23331110     1134566777777765 444433333333 566777


Q ss_pred             EEcCCCcCCCCCCchh-hhhcccccccccCCCCCCCcCCcccCCCccccccccccccc
Q 002875          359 IDLSRNGFTGGIPTDI-NQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNI  415 (872)
Q Consensus       359 L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l  415 (872)
                      |++++|.+++.....+ ..+++|++|++++|+............+++|+.|++++|.+
T Consensus       461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            7777776643322222 34566666666666431111111222345555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=3.8e-23  Score=224.07  Aligned_cols=221  Identities=18%  Similarity=0.225  Sum_probs=130.5

Q ss_pred             CcEEECCCCCCcccCCccccCC--CCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccc-cCccccCCCCCCEEE
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNL--TSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGS-VPAEISQLEHLKVLN   96 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~-~p~~~~~L~~L~~L~   96 (872)
                      ++.+++++|.+.   +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.+. +|..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            667777777665   4555555  7777777777777765554 44677777777777776644 666677777777777


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccC-cCCc-cCCccCCCCCCCCEEEccCc-cCccc-CCccccCCC-CCcEEEeec
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGN-LLND-QIPAELGMLKTVTHMEIGYN-FYQGN-IPWQLGNMS-EVQYLDIAG  171 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~L~~L~~L~l~~n-~~~~~-~p~~~~~l~-~L~~L~ls~  171 (872)
                      |++|.+.+..+..|+.+++|++|++++| .+++ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            7777776666667777777777777777 4543 24444555666666666665 44432 344455555 566666665


Q ss_pred             C--CCc-ccCCccCcCCCCCCEEEccCCC-CcccCCcccccCCCCCEEeCcCCC-CcCcCCccccCCCCCCEEEcccc
Q 002875          172 A--NLS-GSIPKELSNLTKLESLFLFRNQ-LAGQVPWEFSRVTTLKSLDLSDNR-LSGPIPESFADLKNLRLLSLMYN  244 (872)
Q Consensus       172 n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n  244 (872)
                      |  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            5  333 2334444455555555555555 444444445555555555555553 11111113445555555555555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=3.7e-23  Score=226.14  Aligned_cols=256  Identities=20%  Similarity=0.187  Sum_probs=145.3

Q ss_pred             EEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCC----ccccCCC-CCcEEECcCCcCccccCccccCC-----CC
Q 002875           22 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFP----GGIQSLR-NLLVLDAFSNSFSGSVPAEISQL-----EH   91 (872)
Q Consensus        22 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~----~~~~~l~-~L~~LdL~~n~l~~~~p~~~~~L-----~~   91 (872)
                      .++|++|.+++.+|..+...++|++|+|++|.+.+..+    +.|..++ +|++|+|++|.+....+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35788888888777666666668888888888876666    6777787 78888888888887767666654     88


Q ss_pred             CCEEEccCCcccccCCcccC----CC-CCCcEeeCccCcCCccCCccCC----C-CCCCCEEEccCccCcccCCccccCC
Q 002875           92 LKVLNLAGSYFSGPIPSQFG----SF-KSLEFLHLAGNLLNDQIPAELG----M-LKTVTHMEIGYNFYQGNIPWQLGNM  161 (872)
Q Consensus        92 L~~L~L~~n~~~~~~p~~~~----~l-~~L~~L~L~~n~l~~~~p~~l~----~-L~~L~~L~l~~n~~~~~~p~~~~~l  161 (872)
                      |++|+|++|.+.+..+..+.    .+ ++|++|+|++|.+++..+..+.    . .++|++|++++|.+....+.     
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-----  156 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD-----  156 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH-----
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH-----
Confidence            88888888888766555433    33 7888888888887655443322    2 13455555555544321111     


Q ss_pred             CCCcEEEeecCCCcccCCccCcCCC-CCCEEEccCCCCcccCCcccc----cC-CCCCEEeCcCCCCcCc----CCcccc
Q 002875          162 SEVQYLDIAGANLSGSIPKELSNLT-KLESLFLFRNQLAGQVPWEFS----RV-TTLKSLDLSDNRLSGP----IPESFA  231 (872)
Q Consensus       162 ~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~----~~~~~~  231 (872)
                                     .++..+..++ +|++|+|++|++++..+..+.    .+ ++|++|+|++|.++..    ++..+.
T Consensus       157 ---------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          157 ---------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             ---------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             ---------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence                           1111222222 444444444444433332222    22 3455555555554432    122232


Q ss_pred             C-CCCCCEEEcccccCCCCCC----ccccCCCCcceeeccccccccc-------CCccCCCCCCCcEEecCCCeeeec
Q 002875          232 D-LKNLRLLSLMYNEMSGTVP----ESLVQLPSLEILFIWNNYFSGS-------LPENLGRNSKLRWVDVSTNNFNGS  297 (872)
Q Consensus       232 ~-l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~-------~p~~~~~~~~L~~L~ls~n~l~~~  297 (872)
                      . .++|+.|++++|.+.+..+    ..+..+++|+.|++++|.+.+.       ++..+..+++|+.||+++|.+.+.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            2 2355555555555544322    1234445555555555553221       233455666677777777766543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=6.3e-22  Score=211.43  Aligned_cols=226  Identities=19%  Similarity=0.185  Sum_probs=164.8

Q ss_pred             CCCCCEEECcCCcCcccC-Cc--cccCCCCCcEEECcCCcCccccCccc--cCCCCCCEEEccCCcccccCC----cccC
Q 002875           41 LTSLISLDISRNNFSGHF-PG--GIQSLRNLLVLDAFSNSFSGSVPAEI--SQLEHLKVLNLAGSYFSGPIP----SQFG  111 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~~~~-~~--~~~~l~~L~~LdL~~n~l~~~~p~~~--~~L~~L~~L~L~~n~~~~~~p----~~~~  111 (872)
                      ...++.|.+.++.+.... ..  .+..+++|++|++++|.+.+..|..+  ..+++|++|+|++|.+.+..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            345677777776654211 00  12234568888888888887777777  778888888888888776444    3455


Q ss_pred             CCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCccc--C--CccccCCCCCcEEEeecCCCcccCCc----cCc
Q 002875          112 SFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGN--I--PWQLGNMSEVQYLDIAGANLSGSIPK----ELS  183 (872)
Q Consensus       112 ~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~--~--p~~~~~l~~L~~L~ls~n~l~~~~p~----~l~  183 (872)
                      .+++|++|+|++|.+.+..+..++.+++|++|++++|.+.+.  +  +..+..+++|++|++++|.++. ++.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence            678888888888888777777888888888888888876542  1  2334678888888898888863 222    246


Q ss_pred             CCCCCCEEEccCCCCcccCCcccccC---CCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCc
Q 002875          184 NLTKLESLFLFRNQLAGQVPWEFSRV---TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSL  260 (872)
Q Consensus       184 ~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  260 (872)
                      .+++|++|+|++|++.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            77889999999999988777666666   68999999999988 4566654  7899999999998864 33 6778899


Q ss_pred             ceeecccccccc
Q 002875          261 EILFIWNNYFSG  272 (872)
Q Consensus       261 ~~L~l~~n~l~~  272 (872)
                      +.|++++|.++.
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            999999998863

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=9.5e-22  Score=210.05  Aligned_cols=225  Identities=20%  Similarity=0.173  Sum_probs=184.4

Q ss_pred             CCCcEEECCCCCCcccCCc---cccCCCCCCEEECcCCcCcccCCccc--cCCCCCcEEECcCCcCccccC----ccccC
Q 002875           18 NELVDLNLSHNSFSGQFPV---EIFNLTSLISLDISRNNFSGHFPGGI--QSLRNLLVLDAFSNSFSGSVP----AEISQ   88 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~LdL~~n~l~~~~p----~~~~~   88 (872)
                      ..++.|.+.++.+....-.   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4578889988887532111   12345779999999999999999888  899999999999999987555    44567


Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCcc--C--CccCCCCCCCCEEEccCccCcccCCc----cccC
Q 002875           89 LEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQ--I--PAELGMLKTVTHMEIGYNFYQGNIPW----QLGN  160 (872)
Q Consensus        89 L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~l~~L~~L~~L~l~~n~~~~~~p~----~~~~  160 (872)
                      +++|++|+|++|.+.+..|..|+++++|++|+|++|++.+.  +  +..++.+++|++|++++|.+.. ++.    .+.+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            99999999999999988889999999999999999997652  2  2334788999999999998863 222    2568


Q ss_pred             CCCCcEEEeecCCCcccCCccCcCC---CCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCC
Q 002875          161 MSEVQYLDIAGANLSGSIPKELSNL---TKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLR  237 (872)
Q Consensus       161 l~~L~~L~ls~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  237 (872)
                      +++|++||+++|.+.+..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            8999999999999998888887776   69999999999999 4565553  7999999999999964 33 68889999


Q ss_pred             EEEcccccCCC
Q 002875          238 LLSLMYNEMSG  248 (872)
Q Consensus       238 ~L~L~~n~l~~  248 (872)
                      .|++++|+++.
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=7.9e-23  Score=223.55  Aligned_cols=258  Identities=17%  Similarity=0.120  Sum_probs=191.2

Q ss_pred             EEECcCCcCcccCCccccCCCCCcEEECcCCcCccccC----ccccCCC-CCCEEEccCCcccccCCcccCCC-----CC
Q 002875           46 SLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVP----AEISQLE-HLKVLNLAGSYFSGPIPSQFGSF-----KS  115 (872)
Q Consensus        46 ~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p----~~~~~L~-~L~~L~L~~n~~~~~~p~~~~~l-----~~  115 (872)
                      ++++++|.+++.+|..+...++|++|||++|.+....+    ..|..++ +|++|+|++|.+....+..|..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            56788888888888777777779999999998887666    6677888 89999999888887767666665     88


Q ss_pred             CcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCC-CCCcEEEeecCCCcccCCccC----cC-CCCCC
Q 002875          116 LEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNM-SEVQYLDIAGANLSGSIPKEL----SN-LTKLE  189 (872)
Q Consensus       116 L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~L~ls~n~l~~~~p~~l----~~-l~~L~  189 (872)
                      |++|+|++|.+++..+..+.                    ..+..+ ++|++|++++|.+.+..+..+    .. .++|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~--------------------~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELV--------------------KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHH--------------------HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHHHH--------------------HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            88888888887654433221                    123334 677788888887776554443    33 25899


Q ss_pred             EEEccCCCCcccCCc----ccccCC-CCCEEeCcCCCCcCcCCccc----cCC-CCCCEEEcccccCCCC----CCcccc
Q 002875          190 SLFLFRNQLAGQVPW----EFSRVT-TLKSLDLSDNRLSGPIPESF----ADL-KNLRLLSLMYNEMSGT----VPESLV  255 (872)
Q Consensus       190 ~L~L~~n~l~~~~~~----~~~~l~-~L~~L~L~~N~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~p~~l~  255 (872)
                      +|++++|.+.+....    .+..++ +|++|+|++|++++..+..+    ..+ ++|+.|++++|.+.+.    ++..+.
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence            999999998854332    334554 99999999999987766544    445 5999999999999863    344555


Q ss_pred             C-CCCcceeecccccccccCC----ccCCCCCCCcEEecCCCeeee-------cCCCCCCCCCceeEEEcCCCcCCCCCC
Q 002875          256 Q-LPSLEILFIWNNYFSGSLP----ENLGRNSKLRWVDVSTNNFNG-------SIPPDICSGGVLFKLILFSNNFTGSLS  323 (872)
Q Consensus       256 ~-l~~L~~L~l~~n~l~~~~p----~~~~~~~~L~~L~ls~n~l~~-------~~p~~~~~~~~l~~l~l~~n~~~~~~~  323 (872)
                      . .++|++|++++|.+++..+    ..+..+++|+.|++++|.+.+       .++..+.....++.+++++|.+....+
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            5 3599999999999986543    445778899999999998432       234456677889999999999876533

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.4e-20  Score=194.42  Aligned_cols=179  Identities=21%  Similarity=0.245  Sum_probs=129.6

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      ..+.++++++.++. +|..+.  ++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            46788999988874 455555  688899999999888888888888999999999988888777778888888888888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+.+..+..|..+++|++|+|++|.+++..+..+..++                        +|+.|++++|.+.+..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------------------------~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------------------------KLKELRLNTNQLQSIP  147 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------------------------TCCEEECCSSCCCCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC------------------------cccEEECcCCcCCccC
Confidence            8888877777888888888888888888765554455444                        4555555555555444


Q ss_pred             CccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcC
Q 002875          179 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG  224 (872)
Q Consensus       179 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  224 (872)
                      +..+..+++|++|+|++|++.+..+..|..+++|+.|++++|++..
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            4455555666666666666665555556666666666666666553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=4e-23  Score=228.30  Aligned_cols=237  Identities=20%  Similarity=0.270  Sum_probs=113.0

Q ss_pred             CccccCCCCCCEEECcCCcCcccCC----ccccCCCCCcEEECcCC---cCccccCccc-------cCCCCCCEEEccCC
Q 002875           35 PVEIFNLTSLISLDISRNNFSGHFP----GGIQSLRNLLVLDAFSN---SFSGSVPAEI-------SQLEHLKVLNLAGS  100 (872)
Q Consensus        35 ~~~~~~l~~L~~L~Ls~N~i~~~~~----~~~~~l~~L~~LdL~~n---~l~~~~p~~~-------~~L~~L~~L~L~~n  100 (872)
                      +..+..+++|++|+|++|.+....+    ..|..+++|++|+|++|   ++.+.+|..+       ..+++|++|+|++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            4455566667777777666654422    33556666677766664   3333444433       56666666666666


Q ss_pred             cccc----cCCcccCCCCCCcEeeCccCcCCccCCccCC----CC---------CCCCEEEccCccCc-ccCC---cccc
Q 002875          101 YFSG----PIPSQFGSFKSLEFLHLAGNLLNDQIPAELG----ML---------KTVTHMEIGYNFYQ-GNIP---WQLG  159 (872)
Q Consensus       101 ~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~L---------~~L~~L~l~~n~~~-~~~p---~~~~  159 (872)
                      .+..    .+|..+..+++|++|+|++|.++...+..+.    .+         ++|++|++++|.+. +.+|   ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            6655    3455566666666666666666432222221    11         44444444444433 1122   2333


Q ss_pred             CCCCCcEEEeecCCCcc-----cCCccCcCCCCCCEEEccCCCCc----ccCCcccccCCCCCEEeCcCCCCcCc----C
Q 002875          160 NMSEVQYLDIAGANLSG-----SIPKELSNLTKLESLFLFRNQLA----GQVPWEFSRVTTLKSLDLSDNRLSGP----I  226 (872)
Q Consensus       160 ~l~~L~~L~ls~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~----~  226 (872)
                      .+++|++|++++|.+..     ..|..+..+++|+.|+|++|.++    ..+|..+..+++|++|+|++|.+++.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            44445555555554431     12223444444455555544443    22333344444444444444444432    2


Q ss_pred             Ccccc--CCCCCCEEEcccccCCC----CCCccc-cCCCCcceeeccccccc
Q 002875          227 PESFA--DLKNLRLLSLMYNEMSG----TVPESL-VQLPSLEILFIWNNYFS  271 (872)
Q Consensus       227 ~~~~~--~l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~l~~n~l~  271 (872)
                      +..+.  .+++|+.|++++|.+++    .+|..+ ..+++|++|++++|.++
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            23331  24444444444444443    133333 23444444444444443

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.85  E-value=3.6e-22  Score=209.02  Aligned_cols=130  Identities=13%  Similarity=0.095  Sum_probs=108.1

Q ss_pred             chhhhccCCCCCceeeeecCCCcEEEEEEeeccch-------------------hHHHHHHHHHHhhccCCCCceeEEEE
Q 002875          611 TECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT-------------------RIKIVSEFITRIGTVRHKNLIRLLGF  671 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~-------------------~~~~~~~e~~~l~~l~H~niv~l~~~  671 (872)
                      ...+.||+|+||.||+|...+|+.||||.++.+..                   ....+.+|++++++++|   +++.++
T Consensus        93 ~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~---~~v~~~  169 (282)
T 1zar_A           93 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG---LAVPKV  169 (282)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT---SSSCCE
T ss_pred             EecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC---CCcCeE
Confidence            35689999999999999998899999999964321                   34568899999999984   555555


Q ss_pred             EecCCeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          672 CYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       672 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      +.. +..|+||||+++|+|.+ +..    .+...++.|+++||+|||+.   +|+||||||+||+++ ++.+||+|||++
T Consensus       170 ~~~-~~~~lvmE~~~g~~L~~-l~~----~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~vkl~DFG~a  239 (282)
T 1zar_A          170 YAW-EGNAVLMELIDAKELYR-VRV----ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWIIDFPQS  239 (282)
T ss_dssp             EEE-ETTEEEEECCCCEEGGG-CCC----SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTEEEECCCTTC
T ss_pred             Eec-cceEEEEEecCCCcHHH-cch----hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCcEEEEECCCC
Confidence            433 56799999999999998 532    23457999999999999999   999999999999999 999999999998


Q ss_pred             cc
Q 002875          752 YL  753 (872)
Q Consensus       752 ~~  753 (872)
                      +.
T Consensus       240 ~~  241 (282)
T 1zar_A          240 VE  241 (282)
T ss_dssp             EE
T ss_pred             eE
Confidence            64

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.5e-20  Score=192.46  Aligned_cols=180  Identities=25%  Similarity=0.291  Sum_probs=135.8

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCc
Q 002875           43 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLA  122 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  122 (872)
                      ..++++++++.+.. +|..+.  ++|+.|++++|.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            34566666666653 443333  456666666666666555566666666666666666666555566666666666666


Q ss_pred             cCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccC
Q 002875          123 GNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV  202 (872)
Q Consensus       123 ~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  202 (872)
                      +|.+++                        ..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|++++..
T Consensus        92 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           92 NNQLAS------------------------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             TSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcccc------------------------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            666553                        33444566778888888888888777777899999999999999999888


Q ss_pred             CcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCC
Q 002875          203 PWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGT  249 (872)
Q Consensus       203 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (872)
                      +..|..+++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            88899999999999999999988888999999999999999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=7.6e-23  Score=226.04  Aligned_cols=242  Identities=17%  Similarity=0.163  Sum_probs=197.4

Q ss_pred             CCcchhhhcCCCCcEEECCCCCCcccCC----ccccCCCCCCEEECcCCc---CcccCCccc-------cCCCCCcEEEC
Q 002875            8 LPGKPLRIFFNELVDLNLSHNSFSGQFP----VEIFNLTSLISLDISRNN---FSGHFPGGI-------QSLRNLLVLDA   73 (872)
Q Consensus         8 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~---i~~~~~~~~-------~~l~~L~~LdL   73 (872)
                      ++..+.+  .+.|+.|+|++|.|+...+    ..|..+++|++|+|++|.   +.+.+|..+       ..+++|++|+|
T Consensus        24 l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           24 VFAVLLE--DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TSHHHHH--CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHhc--CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            3444445  7889999999999987644    447799999999999964   444556554       78999999999


Q ss_pred             cCCcCcc----ccCccccCCCCCCEEEccCCcccccCCcccC----CC---------CCCcEeeCccCcCC-ccCC---c
Q 002875           74 FSNSFSG----SVPAEISQLEHLKVLNLAGSYFSGPIPSQFG----SF---------KSLEFLHLAGNLLN-DQIP---A  132 (872)
Q Consensus        74 ~~n~l~~----~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~----~l---------~~L~~L~L~~n~l~-~~~p---~  132 (872)
                      ++|.+..    .+|..+..+++|++|+|++|.+....+..+.    .+         ++|++|+|++|.++ ..++   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9999987    4777889999999999999999754444443    34         89999999999997 3444   4


Q ss_pred             cCCCCCCCCEEEccCccCc--c---cCCccccCCCCCcEEEeecCCCc----ccCCccCcCCCCCCEEEccCCCCccc--
Q 002875          133 ELGMLKTVTHMEIGYNFYQ--G---NIPWQLGNMSEVQYLDIAGANLS----GSIPKELSNLTKLESLFLFRNQLAGQ--  201 (872)
Q Consensus       133 ~l~~L~~L~~L~l~~n~~~--~---~~p~~~~~l~~L~~L~ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~--  201 (872)
                      .+..+++|+.|++++|.+.  +   ..|..+..+++|++|++++|.+.    +.+|..+..+++|+.|+|++|.+.+.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            6778899999999999876  2   24447788999999999999996    67788899999999999999999865  


Q ss_pred             --CCcccc--cCCCCCEEeCcCCCCcC----cCCccc-cCCCCCCEEEcccccCCCCCC
Q 002875          202 --VPWEFS--RVTTLKSLDLSDNRLSG----PIPESF-ADLKNLRLLSLMYNEMSGTVP  251 (872)
Q Consensus       202 --~~~~~~--~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~p  251 (872)
                        ++..+.  .+++|++|+|++|.++.    .+|..+ ..+++|+.|++++|++++..+
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence              344553  38999999999999997    467776 668999999999999997653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.2e-22  Score=219.99  Aligned_cols=253  Identities=17%  Similarity=0.228  Sum_probs=193.4

Q ss_pred             CCCCEEECcCCcCcccCCccccCC--CCCcEEECcCCcCccccCccccCCCCCCEEEccCCccccc-CCcccCCCCCCcE
Q 002875           42 TSLISLDISRNNFSGHFPGGIQSL--RNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGP-IPSQFGSFKSLEF  118 (872)
Q Consensus        42 ~~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~  118 (872)
                      ..++.+++++|.+.   +..+..+  ++++.|++++|.+.+..+. +.++++|++|+|++|.+.+. +|..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            45889999999876   4567777  8999999999999876554 66799999999999998765 7788899999999


Q ss_pred             eeCccCcCCccCCccCCCCCCCCEEEccCc-cCcc-cCCccccCCCCCcEEEeecC-CCccc-CCccCcCCC-CCCEEEc
Q 002875          119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYN-FYQG-NIPWQLGNMSEVQYLDIAGA-NLSGS-IPKELSNLT-KLESLFL  193 (872)
Q Consensus       119 L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n-~~~~-~~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~l~~l~-~L~~L~L  193 (872)
                      |+|++|.+++..+..++.+++|++|++++| .+.+ .++..+.++++|++|++++| .+++. ++..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999998888888888999999999998 4554 35666778889999999999 88754 566677888 8999999


Q ss_pred             cCC--CCc-ccCCcccccCCCCCEEeCcCCC-CcCcCCccccCCCCCCEEEccccc-CCCCCCccccCCCCcceeecccc
Q 002875          194 FRN--QLA-GQVPWEFSRVTTLKSLDLSDNR-LSGPIPESFADLKNLRLLSLMYNE-MSGTVPESLVQLPSLEILFIWNN  268 (872)
Q Consensus       194 ~~n--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n  268 (872)
                      ++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            988  444 3445567788899999999888 666667788888899999998885 22221225677888888888887


Q ss_pred             cccccCCccCCCC-CCCcEEecCCCeeeecCCCCC
Q 002875          269 YFSGSLPENLGRN-SKLRWVDVSTNNFNGSIPPDI  302 (872)
Q Consensus       269 ~l~~~~p~~~~~~-~~L~~L~ls~n~l~~~~p~~~  302 (872)
                       +..   ..+..+ ..+..|++++|.+++..|+.+
T Consensus       283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             -cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence             321   122222 235556677777776666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.1e-20  Score=201.32  Aligned_cols=209  Identities=22%  Similarity=0.381  Sum_probs=124.4

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS  100 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n  100 (872)
                      ..+.+..+.+....  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|+|++|
T Consensus        22 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n   95 (308)
T 1h6u_A           22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (308)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence            34455566655432  34567788888888888774 34 57788888888888888875443  788888888888888


Q ss_pred             cccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCc
Q 002875          101 YFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK  180 (872)
Q Consensus       101 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~  180 (872)
                      .+.+.  ..|..+++|++|++++|.+++. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+ 
T Consensus        96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-  168 (308)
T 1h6u_A           96 PLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-  168 (308)
T ss_dssp             CCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             cCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-
Confidence            87753  3577888888888888877653 2 25555555555555555443222  4455555555555555553222 


Q ss_pred             cCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC
Q 002875          181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       181 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                       +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..+++|+.|++++|+++
T Consensus       169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence             4455555555555555543322  444555555555555554322  2444445555555544443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.2e-20  Score=200.93  Aligned_cols=192  Identities=20%  Similarity=0.338  Sum_probs=170.2

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ++.|+.|++++|.+..+ + .+..+++|++|+|++|.+.+..+  +..+++|++|++++|.+.+. + .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence            67899999999999864 4 68999999999999999986544  99999999999999999853 3 799999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      |++|.+.+. + .+..+++|++|++++|.+++..+  ++.+++|++|++++|.+.+..+  +.++++|+.|++++|.+.+
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            999999864 3 39999999999999999987654  8899999999999998876443  8899999999999999986


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG  224 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  224 (872)
                      ..+  +..+++|++|++++|++.+..  .+..+++|+.|++++|++++
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            544  888999999999999999765  38899999999999999975

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=7e-20  Score=199.00  Aligned_cols=240  Identities=16%  Similarity=0.145  Sum_probs=142.0

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccC-ccccCCCCCCE-EEcc
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVP-AEISQLEHLKV-LNLA   98 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p-~~~~~L~~L~~-L~L~   98 (872)
                      ++++-++++++. +|..+.  +++++|+|++|+|+.+.+++|.++++|++|||++|.+.+.+| .+|.++++|++ +.++
T Consensus        12 ~~v~C~~~~Lt~-iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            567788888874 455553  678899999999987777788999999999999998866555 46788888775 5666


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+....|+.|..+++|++|++++|.++...+..+.....+..+++..+                       +.+....
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l~  145 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTIE  145 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEEC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------ccccccc
Confidence            78888888888889999999999998887665555555455555555432                       2222222


Q ss_pred             CccCcCCC-CCCEEEccCCCCcccCCcccccCCCCCEEeCcC-CCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          179 PKELSNLT-KLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD-NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       179 p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      +..+..+. .++.|++++|+++.+.+..| ...+|++|++++ |.++...++.|..+++|+.|++++|+++...+..+..
T Consensus       146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~  224 (350)
T 4ay9_X          146 RNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  224 (350)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred             ccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence            22333332 34445555555544333333 223455555542 3444333344555555555555555555433333333


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCC
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST  291 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~  291 (872)
                      +++|+.+++   .--..+| .+..+++|+.+++++
T Consensus       225 L~~L~~l~~---~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          225 LKKLRARST---YNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             CCEEECTTC---TTCCCCC-CTTTCCSCCEEECSC
T ss_pred             chHhhhccC---CCcCcCC-CchhCcChhhCcCCC
Confidence            333332222   1112333 245555566666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.2e-19  Score=197.25  Aligned_cols=221  Identities=15%  Similarity=0.047  Sum_probs=142.8

Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCC-ccCCCCCCCCE-EEccCccCcccCCccccCCCCCcEEE
Q 002875           91 HLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP-AELGMLKTVTH-MEIGYNFYQGNIPWQLGNMSEVQYLD  168 (872)
Q Consensus        91 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~-L~l~~n~~~~~~p~~~~~l~~L~~L~  168 (872)
                      ++++|+|++|.++.+.+.+|.++++|++|+|++|.+.+.+| ..|.+++++.+ +.++.|.+....|..+..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            44444444444443333344444444444444444433222 23444444433 23333444444556667777888888


Q ss_pred             eecCCCcccCCccCcCCCCCCEEEccC-CCCcccCCcccccCC-CCCEEeCcCCCCcCcCCccccCCCCCCEEEccc-cc
Q 002875          169 IAGANLSGSIPKELSNLTKLESLFLFR-NQLAGQVPWEFSRVT-TLKSLDLSDNRLSGPIPESFADLKNLRLLSLMY-NE  245 (872)
Q Consensus       169 ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~  245 (872)
                      +++|.+....+..+....++..|++.. +.+....+..|..+. .++.|++++|+|+...+..| ...+|+.|+++. |.
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTT
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCc
Confidence            888888766666666677788888865 677777777777765 68899999999986555555 556899999985 66


Q ss_pred             CCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCC
Q 002875          246 MSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSN  316 (872)
Q Consensus       246 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n  316 (872)
                      +....++.|..+++|++|++++|+++...+..+.+   |+.|.+.++.-...+|. +....+|+.+.+.++
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            66555567899999999999999999655555544   55555544433346663 666778888887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.9e-19  Score=180.01  Aligned_cols=181  Identities=17%  Similarity=0.151  Sum_probs=115.8

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS  100 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n  100 (872)
                      +.++.+++.+..+ |..+  .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|
T Consensus        10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            4556666666533 3333  246667777777666655556666677777777777666555555666677777777777


Q ss_pred             cccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCc
Q 002875          101 YFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK  180 (872)
Q Consensus       101 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~  180 (872)
                      .+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence            6665555556667777777777776666555556666777777777766665555556667777777777775543    


Q ss_pred             cCcCCCCCCEEEccCCCCcccCCcccccCCC
Q 002875          181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTT  211 (872)
Q Consensus       181 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  211 (872)
                         .+++|+.|+++.|++++.+|..++.++.
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence               3456677777777777777766665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.7e-19  Score=177.94  Aligned_cols=162  Identities=20%  Similarity=0.183  Sum_probs=97.5

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      +.|+.|+|++|+++++.+..|..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|.++++|++|+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            45666666666666555555666666666666666666555555566666666666666666544445566666666666


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCccc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS  177 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~  177 (872)
                      ++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+       .+++|++|+++.|.++|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence            6666665555556666666666666666665555556666666666666664432       234556666666666666


Q ss_pred             CCccCcCCC
Q 002875          178 IPKELSNLT  186 (872)
Q Consensus       178 ~p~~l~~l~  186 (872)
                      +|..++.++
T Consensus       181 ip~~~~~l~  189 (208)
T 2o6s_A          181 VRNSAGSVA  189 (208)
T ss_dssp             BBCTTSSBC
T ss_pred             eeccCcccc
Confidence            666555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.2e-18  Score=198.95  Aligned_cols=188  Identities=24%  Similarity=0.337  Sum_probs=115.4

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCc
Q 002875           43 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLA  122 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  122 (872)
                      +|++|+|++|.+.+ +|..+  .++|++|+|++|.++ .+|   ..+++|++|+|++|.+++ +|. |.+  +|++|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            55555555555544 33322  244555555555555 333   234555555555555554 343 433  55555555


Q ss_pred             cCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccC
Q 002875          123 GNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV  202 (872)
Q Consensus       123 ~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  202 (872)
                      +|.+++ +|.   .+++|+.|++++|.+.+ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|+|++|.|+. +
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-L  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-C
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-h
Confidence            555544 333   34555555555555554 333   45677777777777775 555 54  778888888888873 3


Q ss_pred             CcccccCCCC-------CEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCC
Q 002875          203 PWEFSRVTTL-------KSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP  258 (872)
Q Consensus       203 ~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  258 (872)
                      |. |..  +|       +.|+|++|+|+ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            44 443  66       99999999998 4677777799999999999999988887766543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=2.2e-18  Score=196.70  Aligned_cols=193  Identities=23%  Similarity=0.372  Sum_probs=159.0

Q ss_pred             cccCCC-----CCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCC
Q 002875           61 GIQSLR-----NLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG  135 (872)
Q Consensus        61 ~~~~l~-----~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  135 (872)
                      .|..++     +|+.|++++|.+++ +|..+.  ++|++|+|++|.++ .+|   ..+++|++|+|++|.+++ +|. +.
T Consensus        49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~  119 (571)
T 3cvr_A           49 AVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP  119 (571)
T ss_dssp             HHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC
T ss_pred             hhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh
Confidence            455554     89999999999986 676663  78999999999998 566   457899999999999987 666 66


Q ss_pred             CCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEE
Q 002875          136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSL  215 (872)
Q Consensus       136 ~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  215 (872)
                      .  +|++|++++|.+.+ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|+|++|++++ +|. |.  ++|+.|
T Consensus       120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L  185 (571)
T 3cvr_A          120 A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL  185 (571)
T ss_dssp             T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE
T ss_pred             c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE
Confidence            5  99999999999887 555   68899999999999986 555   57899999999999987 454 65  899999


Q ss_pred             eCcCCCCcCcCCccccCCCCC-------CEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCC
Q 002875          216 DLSDNRLSGPIPESFADLKNL-------RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN  281 (872)
Q Consensus       216 ~L~~N~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~  281 (872)
                      +|++|+|+ .+|. |..  +|       +.|++++|+++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus       186 ~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          186 DVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             ECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             ECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            99999998 4555 554  77       99999999998 577778889999999999999998888776553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=8.7e-18  Score=169.15  Aligned_cols=152  Identities=19%  Similarity=0.254  Sum_probs=107.3

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS  100 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n  100 (872)
                      +.++++++.++.+ |..+.  ++|++|+|++|.|.++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            5778888888754 54444  67888888888888777777888888888888888888777778888888888888888


Q ss_pred             cccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCc
Q 002875          101 YFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK  180 (872)
Q Consensus       101 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~  180 (872)
                      .++...+..|.++++|++|+|++|.+++..|..|..+++                        |++|++++|.+++..+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~------------------------L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN------------------------LNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------------------CCEEECCSSCCSCCCTT
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC------------------------CCEEECCCCcCCEECHH
Confidence            887666666778888888888888777665555554444                        44455555555544444


Q ss_pred             cCcCCCCCCEEEccCCCCc
Q 002875          181 ELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       181 ~l~~l~~L~~L~L~~n~l~  199 (872)
                      .+..+++|+.|++++|.+.
T Consensus       147 ~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          147 TFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTCTTCCEEECCSSCEE
T ss_pred             HHhCCCCCCEEEeCCCCcC
Confidence            5555566666666666554

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.76  E-value=7.6e-19  Score=181.59  Aligned_cols=135  Identities=14%  Similarity=0.098  Sum_probs=105.8

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcE--EEEEEeeccchh-------------------------HHHHHHHHHHhhccC
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGIT--VSVKKIEWGATR-------------------------IKIVSEFITRIGTVR  661 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~--vavK~~~~~~~~-------------------------~~~~~~e~~~l~~l~  661 (872)
                      +...+.||+|+||.||+|.. .+|+.  ||||+++.....                         ...+.+|+..+++++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            34668899999999999998 78999  999987543111                         135788999999999


Q ss_pred             CCCc--eeEEEEEecCCeeEEEEcccCC-C----ChHHHhhCCCCHHHHHHHHHHHHHHHHHHh-hCCCCCcccCCCCCC
Q 002875          662 HKNL--IRLLGFCYNRHQAYLLYDYLPN-G----NLSEKIRTKRDWAAKYKIVLGVARGLCFLH-HDCYPAIPHGDLKAS  733 (872)
Q Consensus       662 H~ni--v~l~~~~~~~~~~~lv~ey~~~-g----~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH-~~~~~~i~Hrdlk~~  733 (872)
                      |+++  ...+++    +..++||||+.+ |    +|.++... .++.+...++.|++.|++||| +.   +|+||||||+
T Consensus       129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-~~~~~~~~i~~qi~~~l~~lH~~~---givHrDlkp~  200 (258)
T 1zth_A          129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-LKELDVEGIFNDVVENVKRLYQEA---ELVHADLSEY  200 (258)
T ss_dssp             HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-GGGSCHHHHHHHHHHHHHHHHHTS---CEECSSCSTT
T ss_pred             hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHH
Confidence            8864  344433    357899999952 4    67776543 223456789999999999999 88   9999999999


Q ss_pred             CeeeCCCCCeeEccccccccc
Q 002875          734 NIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       734 Nill~~~~~~ki~dfg~~~~~  754 (872)
                      |||++.  .++|+|||++...
T Consensus       201 NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          201 NIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             SEEESS--SEEECCCTTCEET
T ss_pred             HEEEcC--cEEEEECcccccC
Confidence            999998  9999999998653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=3.7e-18  Score=186.17  Aligned_cols=177  Identities=20%  Similarity=0.145  Sum_probs=124.2

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCcccc-CCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQ-SLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      -+.++++++.+.. +|..+.  ..+++|+|++|+|++..+..|. .+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3678888888875 455554  4578888888888887777777 88888888888888887777788888888888888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+....+..|.++++|++|+|++|.++...|..|..+++|++|++++|.+..                        ..
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------l~  152 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR------------------------FP  152 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS------------------------CC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe------------------------eC
Confidence            888887777778888888888888888876666666655555555555554443                        22


Q ss_pred             CccC---cCCCCCCEEEccCCCCcccCCcccccCCC--CCEEeCcCCCCc
Q 002875          179 PKEL---SNLTKLESLFLFRNQLAGQVPWEFSRVTT--LKSLDLSDNRLS  223 (872)
Q Consensus       179 p~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~  223 (872)
                      +..+   ..+++|+.|+|++|+++...+..+..++.  ++.|+|++|.+.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            2222   34566666666666666554445555554  366777777664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.4e-18  Score=198.78  Aligned_cols=189  Identities=23%  Similarity=0.308  Sum_probs=121.7

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .+..++|..+.+..+.+  +..+++|++|++++|.+... + .|..+++|+.|+|++|.+.+..|  +..+++|++|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            45666777777765543  56788899999999888753 3 58888999999999998886544  8888899999999


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                      +|.+.+ +| .|..+++|++|+|++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+..
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            988875 33 688888888888888888652  3355555555555555554432  33444555555555555554433


Q ss_pred             CccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCc
Q 002875          179 PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS  223 (872)
Q Consensus       179 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  223 (872)
                      |  +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++.
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            3  44445555555555554432  13444444555555444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.8e-18  Score=179.10  Aligned_cols=189  Identities=22%  Similarity=0.301  Sum_probs=132.4

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      +..+.+..+.+....  .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+  +.++++|++|+|++
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            334455555555432  234567777777777777643 3 36777777777777777765433  77777777777777


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      |.+.+ +| .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+
T Consensus       100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             SCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            77764 22 377777777777777777653  4566777777777777776654  457778888888888888876544


Q ss_pred             ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcC
Q 002875          180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG  224 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  224 (872)
                        +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus       174 --l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             --hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence              77888888888888888764 3 47888888888888888875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.7e-18  Score=179.15  Aligned_cols=188  Identities=26%  Similarity=0.334  Sum_probs=131.9

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccC
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN  124 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  124 (872)
                      ..+.+..+.+.+..  .+..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+..+  +.++++|++|++++|
T Consensus        27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            33455555555432  245677778888887777643 3 47777788888888887775443  777888888888888


Q ss_pred             cCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCc
Q 002875          125 LLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPW  204 (872)
Q Consensus       125 ~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  204 (872)
                      .+++.  ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ 
T Consensus       101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-  173 (291)
T 1h6t_A          101 KVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  173 (291)
T ss_dssp             CCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence            77652  3377777888888887776653  3566777788888888877754  567777788888888887776544 


Q ss_pred             ccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCC
Q 002875          205 EFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG  248 (872)
Q Consensus       205 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (872)
                       +..+++|++|++++|.++.. + .+..+++|+.|++++|++..
T Consensus       174 -l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence             77777888888888877753 3 37777788888888877764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=167.44  Aligned_cols=153  Identities=16%  Similarity=0.191  Sum_probs=108.3

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCC-ccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFP-GGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      +.+++++|.++. +|..+.  ..+++|+|++|.|++..+ +.|..+++|++|+|++|.+++..+.+|.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            578888888875 455554  356788888888887644 4578888888888888888877777788888888888888


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      |.+.+..+..|.++++|++|+|++|.+++..|..|..+++|+.|                        ++++|.+++..|
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------------------------~L~~N~l~~~~~  146 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL------------------------SLYDNQITTVAP  146 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE------------------------ECTTSCCCCBCT
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE------------------------ECCCCcCCEECH
Confidence            88887777778888888888888888776666555555555544                        455555554445


Q ss_pred             ccCcCCCCCCEEEccCCCCcc
Q 002875          180 KELSNLTKLESLFLFRNQLAG  200 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~  200 (872)
                      ..|..+++|+.|++++|.+..
T Consensus       147 ~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTTTTCTTCCEEECCSCCEEC
T ss_pred             HHhcCCCCCCEEEecCcCCcC
Confidence            555555555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.6e-17  Score=165.61  Aligned_cols=153  Identities=18%  Similarity=0.275  Sum_probs=116.4

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccC
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN  124 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  124 (872)
                      +.+++++|.+.. +|..+.  ++|+.|++++|.+.+..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            467777777663 444332  56777777777777666666777777777777777777666777777777777777777


Q ss_pred             cCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCc
Q 002875          125 LLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPW  204 (872)
Q Consensus       125 ~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  204 (872)
                      .++..                        .+..+.++++|++|++++|.+.+..|..|..+++|+.|+|++|++++..+.
T Consensus        91 ~l~~l------------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           91 KITEL------------------------PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CCCCC------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCcc------------------------CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            66533                        233456677888888888888888888999999999999999999998888


Q ss_pred             ccccCCCCCEEeCcCCCCcC
Q 002875          205 EFSRVTTLKSLDLSDNRLSG  224 (872)
Q Consensus       205 ~~~~l~~L~~L~L~~N~l~~  224 (872)
                      .|..+++|++|++++|.+..
T Consensus       147 ~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          147 TFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTCTTCCEEECCSSCEEC
T ss_pred             HHhCCCCCCEEEeCCCCcCC
Confidence            89999999999999999864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.1e-17  Score=182.46  Aligned_cols=176  Identities=19%  Similarity=0.220  Sum_probs=128.6

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCcccc-CCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEIS-QLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~-~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      +.+++++|.+.. +|..+.  ..++.|+|++|.+++..+..|. ++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            466777776663 444332  3466677777666665555555 666666666666666666566666666666666666


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCC
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP  203 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  203 (872)
                      |.++.                        ..+..+.++++|+.|++++|.+.+..|..|..+++|+.|+|++|+++...+
T Consensus        98 N~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A           98 NHLHT------------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             SCCCE------------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             CcCCc------------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence            66554                        334455667788888888888888888899999999999999999997666


Q ss_pred             ccc---ccCCCCCEEeCcCCCCcCcCCccccCCCC--CCEEEcccccCC
Q 002875          204 WEF---SRVTTLKSLDLSDNRLSGPIPESFADLKN--LRLLSLMYNEMS  247 (872)
Q Consensus       204 ~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~n~l~  247 (872)
                      ..|   ..+++|+.|+|++|+|+...+..+..++.  ++.|++++|++.
T Consensus       154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            556   67999999999999999777778888887  488999999886

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.1e-17  Score=193.28  Aligned_cols=193  Identities=25%  Similarity=0.339  Sum_probs=140.2

Q ss_pred             CCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEee
Q 002875           41 LTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLH  120 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  120 (872)
                      +..+..+.++.+.+....+  +..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+.+..|  |..+++|+.|+
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            3445556777777765443  5778899999999999874 44 68889999999999999987554  88999999999


Q ss_pred             CccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcc
Q 002875          121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAG  200 (872)
Q Consensus       121 L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  200 (872)
                      |++|.+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+
T Consensus        94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           94 LDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             CcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            999998753  3677777788888777776642  3466677777777777777654  456677777777777777766


Q ss_pred             cCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCC
Q 002875          201 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGT  249 (872)
Q Consensus       201 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (872)
                      ..|  +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+.
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            554  66677777777777777653  3466677777777777766643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=3.3e-17  Score=164.95  Aligned_cols=154  Identities=17%  Similarity=0.236  Sum_probs=112.3

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccC-ccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVP-AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p-~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      +++++++|.+.. +|..+.  ..+++|++++|.+++..| ..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            466777776654 344332  234666666666665433 3356666666666666666665555666666666666666


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCC
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP  203 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  203 (872)
                      |.+++                        ..+..+.++++|++|++++|.+.+..|..+..+++|++|+|++|++++..|
T Consensus        91 N~l~~------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           91 NRLEN------------------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             SCCCC------------------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CccCc------------------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            66544                        344456677788888888888888888999999999999999999999999


Q ss_pred             cccccCCCCCEEeCcCCCCcCc
Q 002875          204 WEFSRVTTLKSLDLSDNRLSGP  225 (872)
Q Consensus       204 ~~~~~l~~L~~L~L~~N~l~~~  225 (872)
                      ..|..+++|++|++++|.+...
T Consensus       147 ~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTTTTCTTCCEEECCSCCEECS
T ss_pred             HHhcCCCCCCEEEecCcCCcCC
Confidence            9999999999999999998754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=7.3e-17  Score=163.56  Aligned_cols=154  Identities=21%  Similarity=0.244  Sum_probs=111.2

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      -+.++.+++.+..+ |..+.  ++|++|+|++|.|.+..|..|..+++|++|+|++|.+....+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~~i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASV-PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCcc-CCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45788888888644 44444  7888888888888887788888888888888888888766666678888888888888


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      |.+++..+..|..+++|++|+|++|.++ .+|..                        +..+++|++|++++|.+.+..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~------------------------~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG------------------------IERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT------------------------GGGCTTCSEEECCSSCCCCCCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcc------------------------cccCCCCCEEECCCCcCCccCH
Confidence            8888776777788888888888888775 33433                        4455556666666666665555


Q ss_pred             ccCcCCCCCCEEEccCCCCccc
Q 002875          180 KELSNLTKLESLFLFRNQLAGQ  201 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~  201 (872)
                      ..+..+++|+.|++++|.+...
T Consensus       153 ~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTTCTTCCEEECTTSCBCTT
T ss_pred             HHHhCCCCCCEEEeeCCCccCC
Confidence            5566666777777777766543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.4e-16  Score=161.41  Aligned_cols=153  Identities=24%  Similarity=0.280  Sum_probs=106.0

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccC
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN  124 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  124 (872)
                      +.++.+++.+.. +|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|.+....+..|..+++|++|+|++|
T Consensus        22 ~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            455666655542 333222  55566666666665555555555566666666666555444445555555555555555


Q ss_pred             cCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCc
Q 002875          125 LLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPW  204 (872)
Q Consensus       125 ~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  204 (872)
                      .++                        +..+..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|++.+..+.
T Consensus        99 ~l~------------------------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           99 QLT------------------------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             CCC------------------------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             cCC------------------------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            554                        333444567778888888888888 6788899999999999999999988888


Q ss_pred             ccccCCCCCEEeCcCCCCcCc
Q 002875          205 EFSRVTTLKSLDLSDNRLSGP  225 (872)
Q Consensus       205 ~~~~l~~L~~L~L~~N~l~~~  225 (872)
                      .|..+++|+.|++++|.+...
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTT
T ss_pred             HHhCCCCCCEEEeeCCCccCC
Confidence            899999999999999998754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=3.5e-17  Score=161.88  Aligned_cols=154  Identities=19%  Similarity=0.259  Sum_probs=89.4

Q ss_pred             cCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 002875           39 FNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF  118 (872)
Q Consensus        39 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  118 (872)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..|..|+.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            45667777777777776 334 5667777777777777554  2335666777777777777776656666777777777


Q ss_pred             eeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCC
Q 002875          119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL  198 (872)
Q Consensus       119 L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  198 (872)
                      |++++|.+++..+..++.+++|++|++++|..                       +. .+| .+..+++|++|++++|.+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~-----------------------i~-~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGA-----------------------IT-DIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTB-----------------------CC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCC-----------------------cc-ccH-hhcCCCCCCEEECCCCCC
Confidence            77777766654444454444444444444431                       22 222 344455555555555555


Q ss_pred             cccCCcccccCCCCCEEeCcCCCCc
Q 002875          199 AGQVPWEFSRVTTLKSLDLSDNRLS  223 (872)
Q Consensus       199 ~~~~~~~~~~l~~L~~L~L~~N~l~  223 (872)
                      ++..  .+..+++|++|++++|++.
T Consensus       172 ~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          172 HDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCCT--TGGGCSSCCEEEECBC---
T ss_pred             cChH--HhccCCCCCEEEeeCcccC
Confidence            5422  4555555666666665553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.9e-17  Score=171.59  Aligned_cols=167  Identities=23%  Similarity=0.292  Sum_probs=111.4

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      ..++.+++++|.+..+.  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +.++++|++|+|
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            35677788888887654  57888899999999998875 44 68888899999999998886544  888888999999


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCccc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS  177 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~  177 (872)
                      ++|.+.+. |. +.. ++|++|++++|.+++.  ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+.
T Consensus        93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            99888763 33 333 8888888888888653  2355555555555555554432 2 344455555555555555433


Q ss_pred             CCccCcCCCCCCEEEccCCCCc
Q 002875          178 IPKELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       178 ~p~~l~~l~~L~~L~L~~n~l~  199 (872)
                        ..+..+++|+.|++++|.+.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEE
T ss_pred             --HHhccCCCCCEEeCCCCccc
Confidence              33444444555555444444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=8.7e-17  Score=159.00  Aligned_cols=150  Identities=17%  Similarity=0.235  Sum_probs=116.1

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ++.|+.|++++|.|.. +| .+..+++|++|++++|.+..  +..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            6789999999999984 45 68999999999999997763  35799999999999999999988899999999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCc-CCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCC
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNL-LNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL  174 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l  174 (872)
                      |++|.+.+..|..|+.+++|++|++++|. ++. +| .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            99999998888999999999999999998 653 33 45555555555555554433 11 333444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.1e-19  Score=208.66  Aligned_cols=204  Identities=18%  Similarity=0.171  Sum_probs=131.4

Q ss_pred             cCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCc-------------ccccCCcccCCCCCCcEee-CccCcCCc
Q 002875           63 QSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSY-------------FSGPIPSQFGSFKSLEFLH-LAGNLLND  128 (872)
Q Consensus        63 ~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~-------------~~~~~p~~~~~l~~L~~L~-L~~n~l~~  128 (872)
                      ..+++|+.|+|++|.+. .+|..++++++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            34555556666666554 455556666666666655443             4455667777777777777 5655432 


Q ss_pred             cCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCccccc
Q 002875          129 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSR  208 (872)
Q Consensus       129 ~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  208 (872)
                                .|+.+.++.|.+....+      ..|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..|..
T Consensus       424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                      22333334443332111      246777777777775 454 777777888888888777 55667777


Q ss_pred             CCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCC-CccccCCCCcceeecccccccccCCcc---CCCCCCC
Q 002875          209 VTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTV-PESLVQLPSLEILFIWNNYFSGSLPEN---LGRNSKL  284 (872)
Q Consensus       209 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p~~---~~~~~~L  284 (872)
                      +++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|.+++..|..   +..+++|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence            7888888888887775 45 6777788888888888877665 777777888888888888777654422   1235677


Q ss_pred             cEEec
Q 002875          285 RWVDV  289 (872)
Q Consensus       285 ~~L~l  289 (872)
                      +.|++
T Consensus       563 ~~L~l  567 (567)
T 1dce_A          563 SSILT  567 (567)
T ss_dssp             SEEEC
T ss_pred             CccCC
Confidence            77653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=9.8e-18  Score=173.76  Aligned_cols=171  Identities=18%  Similarity=0.268  Sum_probs=119.7

Q ss_pred             CCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEe
Q 002875           40 NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFL  119 (872)
Q Consensus        40 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  119 (872)
                      ++.+++.+++++|.+.+..  .+..+++|++|++++|.++. +| .+..+++|++|+|++|.+.+..+  |.++++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            4566777788888887543  57888888899998888874 45 68888888888888888886544  8888888888


Q ss_pred             eCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCc
Q 002875          120 HLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       120 ~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  199 (872)
                      ++++|.+++. |. +.                        . .+|++|++++|.+++.  +.+..+++|+.|++++|+++
T Consensus        91 ~L~~N~l~~l-~~-~~------------------------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           91 SVNRNRLKNL-NG-IP------------------------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             ECCSSCCSCC-TT-CC------------------------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccCCc-Cc-cc------------------------c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence            8888887653 21 11                        1 4556666666666542  24666677777777777766


Q ss_pred             ccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCC
Q 002875          200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGT  249 (872)
Q Consensus       200 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  249 (872)
                      +. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++...
T Consensus       142 ~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          142 SI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            54 2 466677777777777777654  5566777777777777776644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=9.8e-18  Score=198.86  Aligned_cols=155  Identities=22%  Similarity=0.312  Sum_probs=65.5

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcc---------cCCccccCCCCCcEEECcCCcCccccCccccC
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG---------HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQ   88 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~---------~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~   88 (872)
                      +.++.|+|.+|.+... +..+     |+.++|+.|.|.+         ..++.|..++.|++|||++|.+. .+|..+.+
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred             CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence            3467777777777653 3222     3333344433322         33555666666666666666665 45555556


Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEE
Q 002875           89 LEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLD  168 (872)
Q Consensus        89 L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  168 (872)
                      +++|++|+|++|.++ .+|..|+++++|++|+|++|.|+ .+|..|+.|++|++|++++|.+. .+|..++++++|++|+
T Consensus       246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence            666666666666665 45666666666666666666665 44555555555555555555443 3444455555555555


Q ss_pred             eecCCCcccCCccC
Q 002875          169 IAGANLSGSIPKEL  182 (872)
Q Consensus       169 ls~n~l~~~~p~~l  182 (872)
                      |++|.+++.+|..+
T Consensus       323 L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          323 VEGNPLEKQFLKIL  336 (727)
T ss_dssp             CTTSCCCSHHHHHH
T ss_pred             CCCCccCCCChHHH
Confidence            55555554444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2.6e-19  Score=205.74  Aligned_cols=189  Identities=20%  Similarity=0.216  Sum_probs=132.1

Q ss_pred             cCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCc-------------CCccCCccCCCCCCCCEEE-ccCccCcc
Q 002875           87 SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNL-------------LNDQIPAELGMLKTVTHME-IGYNFYQG  152 (872)
Q Consensus        87 ~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~L~~L~~L~-l~~n~~~~  152 (872)
                      ..+++|+.|+|++|.+. .+|..++++++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            56778888888888886 578888888888888887664             2333444444444444444 333321  


Q ss_pred             cCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccC
Q 002875          153 NIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFAD  232 (872)
Q Consensus       153 ~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  232 (872)
                               ..|+.+.+++|.+....+      ..|+.|+|++|.+++. |. |..+++|+.|+|++|.++ .+|..++.
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhc
Confidence                     123333344444443221      2477888888888764 54 888888888888888887 56778888


Q ss_pred             CCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccC-CccCCCCCCCcEEecCCCeeeecC
Q 002875          233 LKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSL-PENLGRNSKLRWVDVSTNNFNGSI  298 (872)
Q Consensus       233 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~~~~L~~L~ls~n~l~~~~  298 (872)
                      +++|+.|+|++|++++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+..
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            8888888888888886 55 7888888888888888888766 788888888888888888887543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=3.4e-17  Score=176.24  Aligned_cols=262  Identities=15%  Similarity=0.127  Sum_probs=166.3

Q ss_pred             CCCCcEEECCCCCCcccCCccccC-CCCCCEEECcCCcCc--ccCCccccCCCCCcEEECcCCcCccccCccccC-----
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFN-LTSLISLDISRNNFS--GHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQ-----   88 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~-----   88 (872)
                      ++.++.|.++++- ....-..+.. +++|++|||++|+|.  ...+..+.   .++.+++..|.   +.+.+|.+     
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---ccccccccccc---cCHHHhccccccc
Confidence            4468888887542 1111122333 778888888888887  22222221   13334444442   22344555     


Q ss_pred             ---CCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccC----cccCCccccC-
Q 002875           89 ---LEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFY----QGNIPWQLGN-  160 (872)
Q Consensus        89 ---L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~----~~~~p~~~~~-  160 (872)
                         +++|+.|+|.+ .++.+.+.+|.++++|+.|++.+|.+..+.+..|....++..+..+.+..    ...-...+.+ 
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence               66666666665 55555555666666666666666666555555565555555444433110    0000111212 


Q ss_pred             -------------------------CCCCcEEEeecCCCcccCCccC-cCCCCCCEEEccCCCCcccCCcccccCCCCCE
Q 002875          161 -------------------------MSEVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFSRVTTLKS  214 (872)
Q Consensus       161 -------------------------l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  214 (872)
                                               ..++..+.+.++-... ....+ ..+++|+.++|++|+++.+.+..|.++++|+.
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence                                     2334445444432111 11111 13688999999999999888889999999999


Q ss_pred             EeCcCCCCcCcCCccccCCCCCC-EEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEec
Q 002875          215 LDLSDNRLSGPIPESFADLKNLR-LLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDV  289 (872)
Q Consensus       215 L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~l  289 (872)
                      +++.+| ++.+.+.+|.++.+|+ .+++.. .++...+..|.++++|+.++++.|.+....+..|.++++|+.++.
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999988 7777788899999999 999988 677677788999999999999999998888888999999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=1.2e-15  Score=149.86  Aligned_cols=130  Identities=18%  Similarity=0.252  Sum_probs=110.9

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCc-cccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPG-GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      +.+++++|.+.. +|..+..  +|++|++++|.|.+..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            789999999964 5655553  899999999999877664 488999999999999999988888999999999999999


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCccc
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGN  153 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~  153 (872)
                      |.+++..|..|.++++|++|+|++|.+++..|..+..+++|++|++++|.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999988888899999999999999999888888888888888888887776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=6.1e-17  Score=192.01  Aligned_cols=168  Identities=21%  Similarity=0.243  Sum_probs=122.1

Q ss_pred             CCcEEECCCCCCcc---------cCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCC
Q 002875           19 ELVDLNLSHNSFSG---------QFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQL   89 (872)
Q Consensus        19 ~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L   89 (872)
                      .++.++|++|.|.+         +.+..|..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.+|
T Consensus       192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  269 (727)
T 4b8c_D          192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL  269 (727)
T ss_dssp             ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred             HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence            34555555555543         45788999999999999999998 56667779999999999999999 789999999


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCC-CcEEE
Q 002875           90 EHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSE-VQYLD  168 (872)
Q Consensus        90 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~-L~~L~  168 (872)
                      ++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+.+++|+.|++++|.+.+.+|..+..+.. +..|+
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~  347 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY  347 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence            99999999999999 67999999999999999999996 67888999999999999999999888877654422 23467


Q ss_pred             eecCCCcccCCccCcCCCCCCEEEccCC
Q 002875          169 IAGANLSGSIPKELSNLTKLESLFLFRN  196 (872)
Q Consensus       169 ls~n~l~~~~p~~l~~l~~L~~L~L~~n  196 (872)
                      +++|.+++.+|..+      +.|+++.|
T Consensus       348 l~~N~l~~~~p~~l------~~l~l~~n  369 (727)
T 4b8c_D          348 LRDNRPEIPLPHER------RFIEINTD  369 (727)
T ss_dssp             HHHCCCCCCCCCC---------------
T ss_pred             hccCcccCcCcccc------ceeEeecc
Confidence            88898888777643      45556555

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.63  E-value=5.1e-17  Score=173.44  Aligned_cols=134  Identities=9%  Similarity=0.039  Sum_probs=97.7

Q ss_pred             cchhhhccCCCCCceeeeecCCCcEEEEEEeeccch---------------hHH--------HHHHHHHHhhccCCCCce
Q 002875          610 STECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT---------------RIK--------IVSEFITRIGTVRHKNLI  666 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~---------------~~~--------~~~~e~~~l~~l~H~niv  666 (872)
                      |.....||.|++|.||+|...+|+.||||+++.+..               ...        ...+|...|.++.+..+.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~  176 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP  176 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            558889999999999999999999999998753210               011        123456666666544432


Q ss_pred             eEEEEEecCCeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC----
Q 002875          667 RLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME----  742 (872)
Q Consensus       667 ~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~----  742 (872)
                      ...-+..  ...+|||||+++++|.++...    .....++.|++.|+.|||+.   +||||||||.|||+++++.    
T Consensus       177 vp~p~~~--~~~~LVME~i~G~~L~~l~~~----~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dgd~~d~  247 (397)
T 4gyi_A          177 VPEPIAQ--SRHTIVMSLVDALPMRQVSSV----PDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREEKDAEDP  247 (397)
T ss_dssp             CCCEEEE--ETTEEEEECCSCEEGGGCCCC----SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEECSSCT
T ss_pred             CCeeeec--cCceEEEEecCCccHhhhccc----HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCCCcccc
Confidence            2111111  123799999999988765432    23356789999999999998   9999999999999987763    


Q ss_pred             ------eeEccccccc
Q 002875          743 ------PHLAEFGFKY  752 (872)
Q Consensus       743 ------~ki~dfg~~~  752 (872)
                            +.|+||+-+.
T Consensus       248 ~~~~~~~~iID~~Q~V  263 (397)
T 4gyi_A          248 SSITLTPIIIXFPQMV  263 (397)
T ss_dssp             TSEEEEEEECCCTTCE
T ss_pred             cccccceEEEEeCCcc
Confidence                  8899999653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.3e-15  Score=146.45  Aligned_cols=111  Identities=17%  Similarity=0.172  Sum_probs=76.9

Q ss_pred             CCCCcEEECCCCCCc-ccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           17 FNELVDLNLSHNSFS-GQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      .+.|+.|+|++|.++ +.+|..|..+++|++|++++|.+.+.  ..|..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            456777777777776 45566677777777777777777654  567777777777777777776566666667777777


Q ss_pred             EccCCcccccC-CcccCCCCCCcEeeCccCcCCcc
Q 002875           96 NLAGSYFSGPI-PSQFGSFKSLEFLHLAGNLLNDQ  129 (872)
Q Consensus        96 ~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~  129 (872)
                      +|++|.+.+.. +..|..+++|++|++++|.+++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence            77777776532 25667777777777777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=1e-13  Score=152.18  Aligned_cols=265  Identities=8%  Similarity=0.026  Sum_probs=188.0

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ...++.+.+.. .++.+...+|.+. +|+.+++..| +..+...+|.++ +|+.+++.. .+..+.+.+|.++.+|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            46677777764 4666777888874 7888888766 777777888885 688888875 56667777888888899999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      |++|.+..+...+|. ..+|+.+.|..+ ++.+....|..+++|+.+.+..+ +...-...|.+ .+|+.+++ .+++..
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccE
Confidence            988888877677776 588888888744 66777777888888888888765 33233344555 67888877 345665


Q ss_pred             cCCccCcCCCCCCEEEccCCCCc-----ccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLA-----GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVP  251 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  251 (872)
                      .....|..+++|+.+++..|.+.     .+.+..|..+++|+.+++. +.++.+...+|.++.+|+.+.+..+ +...-.
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            56667777888888888776654     3555677778888888877 3466566677777778888877544 554555


Q ss_pred             ccccCCCCcceeecccccccccCCccCCCCC-CCcEEecCCCee
Q 002875          252 ESLVQLPSLEILFIWNNYFSGSLPENLGRNS-KLRWVDVSTNNF  294 (872)
Q Consensus       252 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~-~L~~L~ls~n~l  294 (872)
                      ..|.++ +|+.+++.+|.+....+..|..++ .++.+.+..+.+
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            667777 777777777766655555555553 556666655543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=6.7e-15  Score=144.56  Aligned_cols=130  Identities=19%  Similarity=0.264  Sum_probs=85.0

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCc-cccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPA-EISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~-~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      +++++++|.+. .+|..+..  +|++|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            57777777775 34544432  677777777777755543 367777777777777777776677777777777777777


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCccc
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQ  201 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  201 (872)
                      |.+++..+..|.                        ++++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus        88 N~l~~~~~~~~~------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFL------------------------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSST------------------------TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhc------------------------CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            777655554444                        455555555555666555566666666666666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.1e-15  Score=143.65  Aligned_cols=127  Identities=17%  Similarity=0.180  Sum_probs=100.8

Q ss_pred             CCCCcEEECCCCCCc-ccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           17 FNELVDLNLSHNSFS-GQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      .+.|+.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..|..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            356889999999987 67777888899999999999988866  678888999999999998887677777788889999


Q ss_pred             EccCCccccc-CCcccCCCCCCcEeeCccCcCCccCC---ccCCCCCCCCEEEc
Q 002875           96 NLAGSYFSGP-IPSQFGSFKSLEFLHLAGNLLNDQIP---AELGMLKTVTHMEI  145 (872)
Q Consensus        96 ~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~L~~L~~L~l  145 (872)
                      ++++|.+.+. .+..++.+++|++|++++|.+++..+   ..++.+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            9999888763 34778888888888888888876544   34555555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.3e-15  Score=143.53  Aligned_cols=134  Identities=18%  Similarity=0.190  Sum_probs=95.0

Q ss_pred             CCCCCCEEECcCCcCc-ccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 002875           40 NLTSLISLDISRNNFS-GHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF  118 (872)
Q Consensus        40 ~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  118 (872)
                      ..++|++|++++|.+. +.+|..|..+++|++|++++|.+++.  ..+..+++|++|+|++|.+.+.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3478999999999987 56777788889999999999988865  67888889999999999888777877778889999


Q ss_pred             eeCccCcCCccCC-ccCCCCCCCCEEEccCccCcccCC---ccccCCCCCcEEEeecCCCc
Q 002875          119 LHLAGNLLNDQIP-AELGMLKTVTHMEIGYNFYQGNIP---WQLGNMSEVQYLDIAGANLS  175 (872)
Q Consensus       119 L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~ls~n~l~  175 (872)
                      |++++|.+++... ..+..+++|++|++++|.+.+..+   ..+..+++|++|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            9999888865322 455555555555555555443332   23444444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=142.31  Aligned_cols=128  Identities=23%  Similarity=0.285  Sum_probs=108.8

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      -+.+++++|.+..+ |..+.  ++|++|+|++|.|. .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        12 ~~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLKVL-PKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCSSC-CSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCCcC-CCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            36889999999754 55554  68999999999998 5678899999999999999999988888899999999999999


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCc
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQ  151 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~  151 (872)
                      |.+++..|..|.++++|++|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            9999888888999999999999999998776667777777887777777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=2e-15  Score=162.31  Aligned_cols=240  Identities=14%  Similarity=0.054  Sum_probs=171.1

Q ss_pred             CCCCcEEECCCCCCc--ccCCccccCCCCCCEEECcCCcCcccCCccccC--------CCCCcEEECcCCcCccccCccc
Q 002875           17 FNELVDLNLSHNSFS--GQFPVEIFNLTSLISLDISRNNFSGHFPGGIQS--------LRNLLVLDAFSNSFSGSVPAEI   86 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~--------l~~L~~LdL~~n~l~~~~p~~~   86 (872)
                      ++.|++|||++|+|.  ...+..+.   .++.+.+..|.   +.+.+|.+        +++|+.|+|.+ .++.+.+.+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEecCcccccc---ccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            678999999999998  33332222   24555555553   33456666        77777777777 6666666677


Q ss_pred             cCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCc----CCccCCccCCCCC------------------------
Q 002875           87 SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNL----LNDQIPAELGMLK------------------------  138 (872)
Q Consensus        87 ~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~----l~~~~p~~l~~L~------------------------  138 (872)
                      .++++|+.|++++|.+..+.+.+|.+..++..+.+..+.    ........|....                        
T Consensus       121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~  200 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ  200 (329)
T ss_dssp             TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred             hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence            777777777777777776777777777777666665421    1112222232222                        


Q ss_pred             --CCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCC-EE
Q 002875          139 --TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLK-SL  215 (872)
Q Consensus       139 --~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L  215 (872)
                        ++..+.+.++............+++|+.|++++|++....+..|.++++|+.|++..| +..+.+.+|.++++|+ .+
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence              3334444332111111111123789999999999999877788999999999999998 8888888999999999 99


Q ss_pred             eCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeec
Q 002875          216 DLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFI  265 (872)
Q Consensus       216 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  265 (872)
                      ++.+ .++.+.+.+|.++++|+.++++.|.+....+..|.++++|+.++.
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9998 787778899999999999999999999888889999999998863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=1.2e-13  Score=151.60  Aligned_cols=243  Identities=9%  Similarity=0.055  Sum_probs=205.9

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      ..|+.++|..+ +..+...+|.+ .+|+.+++.. .+..+.+.+|.++++|+.+++..|.++.+...+|. ..+|+.+.|
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            57999999877 88888899998 4799999985 68878889999999999999999999977666777 689999999


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCc--
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS--  175 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~--  175 (872)
                      ..+ +..+...+|.++++|+.+++..| ++.+....|.. .+|+.+.+..+ +...-+..|.++.+|+.+++.++.+.  
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            854 77788899999999999999975 66677778888 89999999544 44445677889999999999988765  


Q ss_pred             ---ccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCc
Q 002875          176 ---GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE  252 (872)
Q Consensus       176 ---~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  252 (872)
                         ...+..|..+++|+.+++. +.+..+....|.++++|+.+.+..| ++.+...+|.++ +|+.++++.|......+.
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence               4566789999999999998 5588788889999999999999665 776778899999 999999999998877777


Q ss_pred             cccCCC-Ccceeeccccccc
Q 002875          253 SLVQLP-SLEILFIWNNYFS  271 (872)
Q Consensus       253 ~l~~l~-~L~~L~l~~n~l~  271 (872)
                      .|..++ ++..|++..+.+.
T Consensus       364 ~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          364 VWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SCCCSCTTCCEEEECGGGHH
T ss_pred             cccCCCCCccEEEeCHHHHH
Confidence            788885 7888988877654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=2.5e-14  Score=138.67  Aligned_cols=131  Identities=17%  Similarity=0.193  Sum_probs=103.7

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      .+.+++++|++..+ |..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus         9 ~~~l~~~~~~l~~~-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSC-CTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccC-CCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            46788999988754 44443  6889999999999877777788899999999999998877666788889999999999


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCccc
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGN  153 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~  153 (872)
                      |.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            998877777788889999999999888766555566667777777666665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=4.5e-15  Score=139.36  Aligned_cols=110  Identities=19%  Similarity=0.269  Sum_probs=82.4

Q ss_pred             CCCCCEEECcCCcCc-ccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEe
Q 002875           41 LTSLISLDISRNNFS-GHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFL  119 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  119 (872)
                      .++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|+|++|.+.+.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467889999999887 67777888888899999988888765  678888888888888888887677777778888888


Q ss_pred             eCccCcCCcc-CCccCCCCCCCCEEEccCccCcc
Q 002875          120 HLAGNLLNDQ-IPAELGMLKTVTHMEIGYNFYQG  152 (872)
Q Consensus       120 ~L~~n~l~~~-~p~~l~~L~~L~~L~l~~n~~~~  152 (872)
                      ++++|.+++. .+..++.+++|++|++++|.+.+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            8888887653 22445555555555555444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=6.7e-14  Score=137.30  Aligned_cols=127  Identities=26%  Similarity=0.342  Sum_probs=85.1

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccC
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN  124 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  124 (872)
                      +++++++|.+.. +|..+.  ++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            577888888774 454432  57788888888876 56677778888888888888887777777788888888888888


Q ss_pred             cCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCc
Q 002875          125 LLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA  199 (872)
Q Consensus       125 ~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  199 (872)
                      .++...+..|..+++                        |++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKS------------------------LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTT------------------------CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCC------------------------CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            777655555555444                        555555555555444444555666666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1.3e-13  Score=133.61  Aligned_cols=128  Identities=15%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             CCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           44 LISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        44 L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      .+.+++++|.+.. +|..+  .++|++|++++|.+.+..+..|.++++|++|+|++|.+++..+..|+.+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4677888887764 34332  35778888888887766666677778888888888877766666677777888888877


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCC
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL  174 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l  174 (872)
                      |.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            777655554455555555554444444432222233334444444444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=9.3e-14  Score=134.36  Aligned_cols=86  Identities=17%  Similarity=0.050  Sum_probs=41.4

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCc
Q 002875           38 IFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLE  117 (872)
Q Consensus        38 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~  117 (872)
                      +.+..+|++|++++|.+... |......++|++||+++|.+++.  ..|..+++|++|+|++|.+++..+..|+.+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            44445555555555555432 32222222555555555555432  3455555555555555555543333335555555


Q ss_pred             EeeCccCcC
Q 002875          118 FLHLAGNLL  126 (872)
Q Consensus       118 ~L~L~~n~l  126 (872)
                      +|++++|.+
T Consensus        92 ~L~L~~N~i  100 (176)
T 1a9n_A           92 ELILTNNSL  100 (176)
T ss_dssp             EEECCSCCC
T ss_pred             EEECCCCcC
Confidence            555555555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1e-13  Score=134.08  Aligned_cols=126  Identities=17%  Similarity=0.121  Sum_probs=100.5

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCC-CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLT-SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      ...|+.|+|++|.++.+ |. +..+. +|++|++++|.|.+.  ..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            57899999999999865 54 55555 999999999999976  689999999999999999997655566999999999


Q ss_pred             EccCCcccccCCc--ccCCCCCCcEeeCccCcCCccCCcc----CCCCCCCCEEEccCc
Q 002875           96 NLAGSYFSGPIPS--QFGSFKSLEFLHLAGNLLNDQIPAE----LGMLKTVTHMEIGYN  148 (872)
Q Consensus        96 ~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~----l~~L~~L~~L~l~~n  148 (872)
                      +|++|.+.. +|.  .+..+++|++|++++|.+.. .|..    +..+++|+.|+++.|
T Consensus        94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred             ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence            999999964 555  78999999999999999864 3332    444444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=6.1e-13  Score=127.53  Aligned_cols=106  Identities=23%  Similarity=0.236  Sum_probs=90.4

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      .+++++++|.++. +|..+.  ++|++|+|++|.|++..|+.|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            5789999999975 455553  7899999999999988888899999999999999999877777788999999999999


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCc
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLND  128 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~  128 (872)
                      |.+++..+..|.++++|++|+|++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99988777778899999999999998753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1e-12  Score=126.47  Aligned_cols=105  Identities=23%  Similarity=0.226  Sum_probs=88.1

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      -+.+++++|.+.. +|..+.  ++|++|+|++|+|.+..|..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4788999999864 455554  7899999999999888888899999999999999999876666678899999999999


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLN  127 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~  127 (872)
                      |.+.+..+..|..+++|++|+|++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            9998766667888999999999998875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.40  E-value=1.7e-11  Score=135.16  Aligned_cols=316  Identities=12%  Similarity=0.046  Sum_probs=153.4

Q ss_pred             ccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccC
Q 002875           32 GQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFG  111 (872)
Q Consensus        32 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~  111 (872)
                      .+...+|.++++|+.+.|.. .++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +......+|.
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence            34445555555555555542 244444555555555555555433 33334445555555555444432 2223334444


Q ss_pred             CCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEE
Q 002875          112 SFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESL  191 (872)
Q Consensus       112 ~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L  191 (872)
                      +...++.......  .......                        |.++.+|+.+.+.++ +.......|..+++|+.+
T Consensus       138 ~~~~~~~~~~~~~--~~i~~~a------------------------F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i  190 (394)
T 4fs7_A          138 GCDFKEITIPEGV--TVIGDEA------------------------FATCESLEYVSLPDS-METLHNGLFSGCGKLKSI  190 (394)
T ss_dssp             TCCCSEEECCTTC--CEECTTT------------------------TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBC
T ss_pred             cccccccccCccc--cccchhh------------------------hcccCCCcEEecCCc-cceeccccccCCCCceEE
Confidence            4433222222111  1122223                        344445555554432 222333445555556655


Q ss_pred             EccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeeccccccc
Q 002875          192 FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS  271 (872)
Q Consensus       192 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  271 (872)
                      .+..+ +..+....|.++..|+.+.+..+...  +.+.+....+|+.+.+... +.......+..+..|+.+.+..+...
T Consensus       191 ~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~  266 (394)
T 4fs7_A          191 KLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR  266 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE
T ss_pred             EcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce
Confidence            55444 33344455566666666555544322  2222333345555555432 22222334555566666666544322


Q ss_pred             ccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCC
Q 002875          272 GSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFS  351 (872)
Q Consensus       272 ~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  351 (872)
                       .....|..+..++.+....+.+.   ...+.....|..+.+..+ +...-..+|.+|++|+.+++.++ ++.+-...|.
T Consensus       267 -i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  340 (394)
T 4fs7_A          267 -IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR  340 (394)
T ss_dssp             -ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred             -eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence             33444555555555555444321   112333445555554432 33333455667777777777543 5545556677


Q ss_pred             CCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCC
Q 002875          352 QLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNN  388 (872)
Q Consensus       352 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n  388 (872)
                      ++.+|+.+++..| +...-..+|.++.+|+.+++..+
T Consensus       341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            7777777777655 44344456666666776666544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=1.8e-15  Score=149.67  Aligned_cols=130  Identities=15%  Similarity=0.193  Sum_probs=86.4

Q ss_pred             CCCCcEEECCCCCCcccCCc------cccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCC
Q 002875           17 FNELVDLNLSHNSFSGQFPV------EIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLE   90 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~   90 (872)
                      ...++.++++.+.+++..|.      .|..+++|++|+|++|.+.+ +| .+..+++|++|++++|.+. .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            35666666777776666665      77777788888888887775 45 6777777888888777776 4566666667


Q ss_pred             CCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCC-ccCCCCCCCCEEEccCccCc
Q 002875           91 HLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP-AELGMLKTVTHMEIGYNFYQ  151 (872)
Q Consensus        91 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n~~~  151 (872)
                      +|++|+|++|.+.+ +| .+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            77777777777765 34 57777777777777777754322 23444444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=3.6e-15  Score=147.48  Aligned_cols=155  Identities=20%  Similarity=0.282  Sum_probs=101.3

Q ss_pred             ccCCCCCCEEECcCCcCcccCCc------cccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccC
Q 002875           38 IFNLTSLISLDISRNNFSGHFPG------GIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFG  111 (872)
Q Consensus        38 ~~~l~~L~~L~Ls~N~i~~~~~~------~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~  111 (872)
                      +.....++.++++.|.+.+..|.      .|..+++|++|++++|.+.+ +| .+.++++|++|+|++|.+. .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            44556777777777777776665      78888888888888888875 55 7788888888888888887 4676777


Q ss_pred             CCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC-ccCcCCCCCCE
Q 002875          112 SFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP-KELSNLTKLES  190 (872)
Q Consensus       112 ~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~  190 (872)
                      .+++|++|++++|.+++. | .+..                        +++|++|++++|.+.+..+ ..+..+++|++
T Consensus        91 ~~~~L~~L~L~~N~l~~l-~-~~~~------------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T 1ds9_A           91 VADTLEELWISYNQIASL-S-GIEK------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HHHHCSEEEEEEEECCCH-H-HHHH------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             cCCcCCEEECcCCcCCcC-C-cccc------------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence            778888888888877642 2 3444                        4445555555555543221 34555566666


Q ss_pred             EEccCCCCcccCCc----------ccccCCCCCEEeCcCCCCc
Q 002875          191 LFLFRNQLAGQVPW----------EFSRVTTLKSLDLSDNRLS  223 (872)
Q Consensus       191 L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~N~l~  223 (872)
                      |++++|.+.+..|.          .+..+++|+.||  +|.++
T Consensus       145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            66666665544332          256667777665  44443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=4.1e-12  Score=121.72  Aligned_cols=106  Identities=23%  Similarity=0.283  Sum_probs=84.1

Q ss_pred             CCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           44 LISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        44 L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      .+.+++++|.+.. +|..+  .++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4688899888875 55544  37888899999988887788888888899999988888877777788888888888888


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcc
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQG  152 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~  152 (872)
                      |.+++..+..|..+++|++|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            88887666667777777777777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.35  E-value=7.7e-11  Score=129.81  Aligned_cols=323  Identities=10%  Similarity=0.071  Sum_probs=211.1

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ...|+.+.|.. .++.+...+|.++++|+.++|..+ +..+...+|.++..|+.+.+..+ +..+...+|.+...+....
T Consensus        70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~  146 (394)
T 4fs7_A           70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI  146 (394)
T ss_dssp             CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred             CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence            36899999985 488888899999999999999865 67677789999999999887655 5545666787776555444


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      ...  ...+...+|.++++|+.+.+..+ +..+....|....+|+.+.+..+ +...-...+.+...|+.+.+..+... 
T Consensus       147 ~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-  221 (394)
T 4fs7_A          147 PEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-  221 (394)
T ss_dssp             CTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-
T ss_pred             Ccc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-
Confidence            333  33345678999999999999765 34556667888888888877665 22233445666677776666554332 


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                       +.+......+|+.+.+..+ +..+....|..+..|+.+.+..+... .....|..+..++.+....+.+.   ...+..
T Consensus       222 -i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~  295 (394)
T 4fs7_A          222 -LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYG  295 (394)
T ss_dssp             -ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTT
T ss_pred             -eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccc
Confidence             2223333456777776533 33344456777777787777766443 45566777777777766554332   234666


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEE
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLR  336 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~  336 (872)
                      +.+|+.+.+..+ +...-...|..+.+|+.+++..+ +                        ...-..+|.+|++|+.+.
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v------------------------~~I~~~aF~~c~~L~~i~  349 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V------------------------EEIGKRSFRGCTSLSNIN  349 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C------------------------CEECTTTTTTCTTCCEEC
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-c------------------------cEEhHHhccCCCCCCEEE
Confidence            777777777543 44344555666667776666432 2                        112234677788888888


Q ss_pred             cCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhccccc
Q 002875          337 LEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEY  382 (872)
Q Consensus       337 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  382 (872)
                      +..+ ++.+-...|.++++|+.+++..+- . .+..+|.+.++|+.
T Consensus       350 lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          350 FPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             CCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred             ECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence            8766 665666778888888888876542 2 22345555566554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=7.4e-12  Score=120.35  Aligned_cols=105  Identities=19%  Similarity=0.228  Sum_probs=81.7

Q ss_pred             CCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           44 LISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        44 L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      -+.+++++|.+. .+|..+.  ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368888888886 4565553  7888888888888887788888888888888888888876666778888888888888


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCc
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQ  151 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~  151 (872)
                      |.+++..+..|..+++|++|++++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            8887665555777777777776666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=5.5e-11  Score=128.70  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=79.3

Q ss_pred             EEECCCC-CCcccCCccccCCCCCCEEECcC-CcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           22 DLNLSHN-SFSGQFPVEIFNLTSLISLDISR-NNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        22 ~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      .++++++ +++. +|. +..+++|++|+|++ |.|.++.++.|..+++|++|+|++|++++..|..|.+|++|++|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577777 7765 455 88888888888885 888877777788888888888888888877777788888888888888


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLN  127 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~  127 (872)
                      |.+.+..+..|..++ |+.|+|.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            888766666666665 888888877764

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.15  E-value=8.8e-11  Score=121.59  Aligned_cols=137  Identities=17%  Similarity=0.042  Sum_probs=107.5

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccc-hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGA-TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      .....+.|+.+.||+.... |+.+++|...... .....+.+|++.++.+. |..+.++++++.+.+..|+||||++|.+
T Consensus        18 ~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~   96 (263)
T 3tm0_A           18 CVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVL   96 (263)
T ss_dssp             EEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEE
T ss_pred             eEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCee
Confidence            5667777888999998754 7899999986432 22345788899998885 6778889999988889999999999999


Q ss_pred             hHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCC------------------------------------------------
Q 002875          690 LSEKIRTKRDWAAKYKIVLGVARGLCFLHHDC------------------------------------------------  721 (872)
Q Consensus       690 L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~------------------------------------------------  721 (872)
                      +.+.+..   ..+...++.+++++++.||+..                                                
T Consensus        97 l~~~~~~---~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (263)
T 3tm0_A           97 CSEEYED---EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDF  173 (263)
T ss_dssp             HHHHCCT---TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHH
T ss_pred             hhhccCC---cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHH
Confidence            9876422   1234578889999999999810                                                


Q ss_pred             --------CCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          722 --------YPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       722 --------~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                              .+.++|+|++|.||+++++..+.|+||+.+.
T Consensus       174 l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          174 LKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                    1358999999999999876667799999763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=7.5e-13  Score=143.77  Aligned_cols=187  Identities=14%  Similarity=0.125  Sum_probs=99.2

Q ss_pred             CCCCcEEECCCCCCcccCCccccC-----CCCCCEEECcCCcCcccCCccc-cCCCCCcEEECcCCcCccccCccc----
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFN-----LTSLISLDISRNNFSGHFPGGI-QSLRNLLVLDAFSNSFSGSVPAEI----   86 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~LdL~~n~l~~~~p~~~----   86 (872)
                      .+.|+.|+|++|.|+......+..     .++|++|+|++|.+.......+ ..+++|+.|||++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356777777777776443333322     2567777777777653222222 345566777777776654333333    


Q ss_pred             -cCCCCCCEEEccCCccccc----CCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCC
Q 002875           87 -SQLEHLKVLNLAGSYFSGP----IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNM  161 (872)
Q Consensus        87 -~~L~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l  161 (872)
                       ....+|++|+|++|.++..    ++..+..+++|++|+|++|.+.+....                    .++..+...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~  210 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRN  210 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcC
Confidence             2346677777777766431    233345566666666666665431100                    122334455


Q ss_pred             CCCcEEEeecCCCccc----CCccCcCCCCCCEEEccCCCCcccCCcccccC---C--CCCEEe--CcCCCCc
Q 002875          162 SEVQYLDIAGANLSGS----IPKELSNLTKLESLFLFRNQLAGQVPWEFSRV---T--TLKSLD--LSDNRLS  223 (872)
Q Consensus       162 ~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~--~L~~L~--L~~N~l~  223 (872)
                      ++|+.|++++|.+...    ++..+...++|++|+|++|.|+..-...+..+   .  .|+.+.  +..|.++
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            6677777777776542    23334455677778888777764332233222   1  155555  5555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.10  E-value=1.3e-12  Score=141.99  Aligned_cols=111  Identities=18%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             CCCCCEEEccCccCcc----cCCccccCCCCCcEEEeecCCCccc----CCccCcCCCCCCEEEccCCCCcccC----Cc
Q 002875          137 LKTVTHMEIGYNFYQG----NIPWQLGNMSEVQYLDIAGANLSGS----IPKELSNLTKLESLFLFRNQLAGQV----PW  204 (872)
Q Consensus       137 L~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~----~~  204 (872)
                      .++|+.|++++|.+..    .++..+...++|++|||++|.+...    ++..+...++|++|+|++|.++...    +.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            3445555555554432    2334456778899999999988642    3556677889999999999997532    23


Q ss_pred             ccccCCCCCEEeCcCCCCcCcCCccccCCC-----CCCEEE--cccccCC
Q 002875          205 EFSRVTTLKSLDLSDNRLSGPIPESFADLK-----NLRLLS--LMYNEMS  247 (872)
Q Consensus       205 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~--L~~n~l~  247 (872)
                      .+...++|++|+|++|.|+......+..+.     .|+.+.  +..+.+.
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            345678999999999999865444443332     266666  5555554

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.09  E-value=2e-10  Score=118.91  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=98.4

Q ss_pred             cCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCc--eeEEEEEecCCeeEEEEcccCCCChHHHh
Q 002875          617 ARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL--IRLLGFCYNRHQAYLLYDYLPNGNLSEKI  694 (872)
Q Consensus       617 g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~ni--v~l~~~~~~~~~~~lv~ey~~~g~L~~~l  694 (872)
                      +.|..+.||+....+|..++||.....  ....+.+|++.++.+++.++  .++++++..++..++||||++|.++.  .
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--~  104 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSG--ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--S  104 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSC--TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--T
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCcc--cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--c
Confidence            456669999998888899999997643  23457788898888865554  45888888888899999999998884  2


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHhhCC-----------------------------------------------------
Q 002875          695 RTKRDWAAKYKIVLGVARGLCFLHHDC-----------------------------------------------------  721 (872)
Q Consensus       695 ~~~~~~~~~~~i~~~i~~gl~~lH~~~-----------------------------------------------------  721 (872)
                      . ..+   ...++.++++.++.||+..                                                     
T Consensus       105 ~-~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (264)
T 1nd4_A          105 S-HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPD  180 (264)
T ss_dssp             S-CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCS
T ss_pred             C-cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCC
Confidence            2 122   2367788888888888742                                                     


Q ss_pred             --CCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          722 --YPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       722 --~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                        .+.++|+|++|.||+++++..++|.|||.+.
T Consensus       181 ~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          181 GEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             SCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             CCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence              1139999999999999877667799999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=2.9e-10  Score=123.00  Aligned_cols=102  Identities=18%  Similarity=0.131  Sum_probs=80.2

Q ss_pred             EEECcCC-cCcccCCccccCCCCCcEEECcC-CcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCcc
Q 002875           46 SLDISRN-NFSGHFPGGIQSLRNLLVLDAFS-NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        46 ~L~Ls~N-~i~~~~~~~~~~l~~L~~LdL~~-n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  123 (872)
                      .++++++ .+.+ +|. +..+++|++|+|++ |.+.+..|..|.+|++|++|+|++|.+++..|..|+++++|++|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            5688887 7874 666 88888999999986 888887778889999999999999999888888889999999999999


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccC
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFY  150 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~  150 (872)
                      |.|++..+..+..+. |+.|++.+|.+
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCc
Confidence            988766555555444 55555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.09  E-value=1.9e-08  Score=110.58  Aligned_cols=131  Identities=16%  Similarity=0.193  Sum_probs=58.5

Q ss_pred             CCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCC
Q 002875          226 IPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG  305 (872)
Q Consensus       226 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~  305 (872)
                      ...+|.++.+|+.+.+..+... .....|.++++|+.+.+. +.+.......|.++.+|+.+++..+ +           
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v-----------  322 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-I-----------  322 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-C-----------
T ss_pred             ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-c-----------
Confidence            3445555555665555433221 233345555555555553 2333333344555555555555432 1           


Q ss_pred             CceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccc
Q 002875          306 GVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNV  385 (872)
Q Consensus       306 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  385 (872)
                                   +..-..+|.+|++|+.+.+..+ ++.+-...|.++++|+.+++.++....   ..+....+|+.+.+
T Consensus       323 -------------~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          323 -------------TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV  385 (394)
T ss_dssp             -------------CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred             -------------cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence                         1122234555666666666433 443444556666666666665543221   12333344555554


Q ss_pred             cC
Q 002875          386 SN  387 (872)
Q Consensus       386 s~  387 (872)
                      ..
T Consensus       386 ~~  387 (394)
T 4gt6_A          386 AP  387 (394)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.05  E-value=1.6e-08  Score=111.16  Aligned_cols=310  Identities=11%  Similarity=0.102  Sum_probs=201.7

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCc---CcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNN---FSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      .|+.+.+..+ ++.+...+|.++++|+.+.++.|.   ++.+...+|.++.+|+.+.+..+ ++.+...+|..+.+|+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            4888888754 777888889999999999887764   66666778888888888877654 555666678888899998


Q ss_pred             EccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCc
Q 002875           96 NLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS  175 (872)
Q Consensus        96 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~  175 (872)
                      .+..+ +..+....|....+|+.+.+..+ ++.+....|.. ..|+.+.+..+.. ..-...+.+...+...........
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC
T ss_pred             cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceecccccccc
Confidence            88654 44466677888888988888755 44455555654 5677777765422 122334555666666655443322


Q ss_pred             ccCCc-------------cCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcc
Q 002875          176 GSIPK-------------ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM  242 (872)
Q Consensus       176 ~~~p~-------------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  242 (872)
                      ...-.             .+.....+..+.+. +.+..+-..+|..+..|+.+.+.++.. ......|.++.+|+.+.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~  296 (394)
T 4gt6_A          219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS  296 (394)
T ss_dssp             BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred             cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC
Confidence            11000             01112234444443 334445566788999999999976654 3566789999999999996


Q ss_pred             cccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCC
Q 002875          243 YNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSL  322 (872)
Q Consensus       243 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~  322 (872)
                       +.+.......|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ +. .                       .-
T Consensus       297 -~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~-----------------------I~  349 (394)
T 4gt6_A          297 -SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-K-----------------------IP  349 (394)
T ss_dssp             -TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-B-----------------------CC
T ss_pred             -CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-E-----------------------Eh
Confidence             4455555678899999999999754 55455667888888888877543 21 1                       22


Q ss_pred             CCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcC
Q 002875          323 SPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGF  366 (872)
Q Consensus       323 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  366 (872)
                      ..+|.+|++|+.+++.++....   ..|....+|+.+.+..|.+
T Consensus       350 ~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             HhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            3467889999999998876542   3566677788887776654

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.00  E-value=9.3e-10  Score=119.52  Aligned_cols=140  Identities=14%  Similarity=0.206  Sum_probs=106.7

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEee--ccc--hhHHHHHHHHHHhhccC--CCCceeEEEEEecC---CeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIE--WGA--TRIKIVSEFITRIGTVR--HKNLIRLLGFCYNR---HQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~--~~~--~~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~---~~~~lv~  682 (872)
                      ..+.++.|.++.||+....+ ..+++|+..  .+.  .....+.+|+.+++.++  +..+.++++++.+.   +..|+||
T Consensus        42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm  120 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM  120 (359)
T ss_dssp             EEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred             eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence            45668899999999988754 578888876  432  22456778899998887  45678899998876   4589999


Q ss_pred             cccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCC-----------------------------------------
Q 002875          683 DYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDC-----------------------------------------  721 (872)
Q Consensus       683 ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~-----------------------------------------  721 (872)
                      ||++|..+.+......+..++..++.+++++|+.||+..                                         
T Consensus       121 e~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (359)
T 3dxp_A          121 EFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSL  200 (359)
T ss_dssp             ECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             EecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHH
Confidence            999998886544345577888899999999999999731                                         


Q ss_pred             --------------CCCcccCCCCCCCeeeCCCCC--eeEccccccc
Q 002875          722 --------------YPAIPHGDLKASNIVFDENME--PHLAEFGFKY  752 (872)
Q Consensus       722 --------------~~~i~Hrdlk~~Nill~~~~~--~ki~dfg~~~  752 (872)
                                    .+.++|+|+++.||+++.++.  +.|.||+.+.
T Consensus       201 ~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~  247 (359)
T 3dxp_A          201 MDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELST  247 (359)
T ss_dssp             HHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCE
T ss_pred             HHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccc
Confidence                          247999999999999997753  6899999875

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.75  E-value=5.9e-09  Score=110.21  Aligned_cols=186  Identities=13%  Similarity=0.074  Sum_probs=120.6

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccC-CCC--ceeEEEEEecCC---eeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVR-HKN--LIRLLGFCYNRH---QAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~n--iv~l~~~~~~~~---~~~lv~ey~  685 (872)
                      ..+.++.|....||+..    ..+++|+-... .....+.+|.+.++.+. +..  +.+.++++...+   ..|+||||+
T Consensus        24 ~i~~~~~G~~n~v~~v~----~~~vlR~~~~~-~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i   98 (304)
T 3sg8_A           24 TIEISGEGNDCIAYEIN----RDFIFKFPKHS-RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI   98 (304)
T ss_dssp             CCCEEEECSSEEEEEST----TSEEEEEESSH-HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred             eeEecCCCCcceEEEEC----CEEEEEecCCc-chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence            34557889999999864    56889986432 33566788999998874 332  335555544333   458999999


Q ss_pred             CCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhC---------------------------------------------
Q 002875          686 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHD---------------------------------------------  720 (872)
Q Consensus       686 ~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~---------------------------------------------  720 (872)
                      +|.++.+......+..++..++.++++.++.||+.                                             
T Consensus        99 ~G~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  178 (304)
T 3sg8_A           99 KGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYR  178 (304)
T ss_dssp             CCEECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             CCeECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHH
Confidence            99888765555567777888888888888888861                                             


Q ss_pred             ----------CCCCcccCCCCCCCeeeCC--CCCeeEccccccccccccC--CCCcccccccCch---hhhcc-c-----
Q 002875          721 ----------CYPAIPHGDLKASNIVFDE--NMEPHLAEFGFKYLTQLAD--GSFPAKIAWTESG---EFYNA-M-----  777 (872)
Q Consensus       721 ----------~~~~i~Hrdlk~~Nill~~--~~~~ki~dfg~~~~~~~~~--~~~~~~~~~~~~~---e~~~~-~-----  777 (872)
                                ..+.++|+|++|.||++++  ...+.|.||+.+..-....  .........+.++   .+... .     
T Consensus       179 ~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~  258 (304)
T 3sg8_A          179 DILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIP  258 (304)
T ss_dssp             HHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHH
T ss_pred             HHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcH
Confidence                      1145899999999999997  4568899999875421100  0000000000000   01110 0     


Q ss_pred             ----CCcccccchhHHHHHHHHHcCCCCC
Q 002875          778 ----KEEMYMDVYGFGEIILEILTNGRLT  802 (872)
Q Consensus       778 ----~~~~~~Dv~S~Gvil~el~tg~~p~  802 (872)
                          ......+.|++|+++|++.+|..++
T Consensus       259 ~~~~r~~~~~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          259 TVLEKYRMKEKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence                1122258999999999999987654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.74  E-value=1.5e-06  Score=94.79  Aligned_cols=253  Identities=9%  Similarity=0.031  Sum_probs=128.2

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      ..|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++ .|+.+.+..+ +..+...+|... +|+.+.+
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l  120 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF  120 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred             cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence            4577777754 466666777888888888887643 666666777776 5666665433 444444556543 6777777


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCccc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS  177 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~  177 (872)
                      ..+ +..+...+|.+. +|+...+..+ ++......+.....++...+..+..........         ....   ...
T Consensus       121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~---~~~  185 (379)
T 4h09_A          121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV---------LYNK---NKT  185 (379)
T ss_dssp             CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE---------EEET---TSS
T ss_pred             CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce---------eccc---ccc
Confidence            654 333344455443 4555544432 334444455555666655554332110000000         0000   001


Q ss_pred             CCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCC
Q 002875          178 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL  257 (872)
Q Consensus       178 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  257 (872)
                      ....+.....+..+.+.... .......+.....|+.+.+..+ +.......|..+.+|+.+.+..+ ++..-...+..+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~  262 (379)
T 4h09_A          186 ILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC  262 (379)
T ss_dssp             EEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred             eeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee
Confidence            11122223334444433221 2233344555566666666543 33344455666666666666544 333334455666


Q ss_pred             CCcceeecccccccccCCccCCCCCCCcEEecCCCee
Q 002875          258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNF  294 (872)
Q Consensus       258 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l  294 (872)
                      .+|+.+.+..+ +.......|..+.+|+.+.+.++.+
T Consensus       263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i  298 (379)
T 4h09_A          263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAI  298 (379)
T ss_dssp             TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTC
T ss_pred             ehhcccccccc-ceecccccccccccccccccccccc
Confidence            66666666433 3333444566666666666655544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=9.3e-09  Score=110.42  Aligned_cols=63  Identities=21%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             CCCCCEEEccCCCCcccCCccc---ccCCCCCEEeCcCCCCcCc----CCccccCCCCCCEEEcccccCC
Q 002875          185 LTKLESLFLFRNQLAGQVPWEF---SRVTTLKSLDLSDNRLSGP----IPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       185 l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      +++|++|+|.+|.+.+..+..+   ..+++|++|+|+.|.+...    ++..+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4555555555555543211111   1345566666666665542    1222234566666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.60  E-value=5.3e-06  Score=90.44  Aligned_cols=263  Identities=10%  Similarity=0.015  Sum_probs=156.4

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ...|+.++|..+ ++.+...+|.+. +|+.+.+..+ +..+...+|... +|+.+++..+ +..+....|.+. +|+...
T Consensus        68 C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~  141 (379)
T 4h09_A           68 CYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIV  141 (379)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEE
T ss_pred             CCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeee
Confidence            468999999755 777888899887 7888887644 666667788775 7999999765 443455566654 677776


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCcc------------CCccCCCCCCCCEEEccCccCcccCCccccCCCCC
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQ------------IPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV  164 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~------------~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L  164 (872)
                      +..+ +..+....|....+++...+..+.....            ....+.....+....+.... .......+....++
T Consensus       142 ~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l  219 (379)
T 4h09_A          142 IPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNL  219 (379)
T ss_dssp             ECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSC
T ss_pred             ccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeeccccccccc
Confidence            6543 5556677888889998888765543211            11122233333333332221 11122233445556


Q ss_pred             cEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccc
Q 002875          165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN  244 (872)
Q Consensus       165 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n  244 (872)
                      +.+.+..+ +.......+.....|+.+.+..+ ++.+-...|..+.+|+.+.+..+ +.......|.++.+|+.+.+..+
T Consensus       220 ~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~  296 (379)
T 4h09_A          220 KKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS  296 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT
T ss_pred             ceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc
Confidence            66555433 33333445556666666666544 44444556666666776666543 44344456666677777776666


Q ss_pred             cCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCC
Q 002875          245 EMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVST  291 (872)
Q Consensus       245 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~  291 (872)
                      .+...-...|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus       297 ~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          297 AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            665455556666666776666533 4434445566666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.59  E-value=1.1e-08  Score=109.74  Aligned_cols=84  Identities=15%  Similarity=0.248  Sum_probs=56.6

Q ss_pred             CCCCCcEEEeecCCCcccCCccC---cCCCCCCEEEccCCCCccc----CCcccccCCCCCEEeCcCCCCcCcCCccccC
Q 002875          160 NMSEVQYLDIAGANLSGSIPKEL---SNLTKLESLFLFRNQLAGQ----VPWEFSRVTTLKSLDLSDNRLSGPIPESFAD  232 (872)
Q Consensus       160 ~l~~L~~L~ls~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  232 (872)
                      .+++|++|++++|.+....+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            46788888888888764333222   2477899999999988753    2223356788999999999877543333332


Q ss_pred             -CCCCCEEEccccc
Q 002875          233 -LKNLRLLSLMYNE  245 (872)
Q Consensus       233 -l~~L~~L~L~~n~  245 (872)
                       +  ...++++.++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3567888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.29  E-value=1.2e-07  Score=96.42  Aligned_cols=80  Identities=24%  Similarity=0.367  Sum_probs=43.8

Q ss_pred             cCCCCCcEEECcCCcCcc--ccCccccCCCCCCEEEccCCcccccCCcccCCCC--CCcEeeCccCcCCccCCc------
Q 002875           63 QSLRNLLVLDAFSNSFSG--SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFK--SLEFLHLAGNLLNDQIPA------  132 (872)
Q Consensus        63 ~~l~~L~~LdL~~n~l~~--~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~------  132 (872)
                      .++++|+.|+|++|.+++  .+|..+..+++|++|+|++|.+.+.  ..+..++  +|++|+|++|.+.+..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            345566666666666654  2234455566666666666666543  2233333  666666666666554431      


Q ss_pred             -cCCCCCCCCEEE
Q 002875          133 -ELGMLKTVTHME  144 (872)
Q Consensus       133 -~l~~L~~L~~L~  144 (872)
                       .+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             244556666554

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.28  E-value=2.9e-06  Score=89.27  Aligned_cols=137  Identities=13%  Similarity=0.061  Sum_probs=95.9

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCC---CceeEEEEEe-cCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHK---NLIRLLGFCY-NRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~---niv~l~~~~~-~~~~~~lv~ey~~~  687 (872)
                      ..+.++.|....||+.    |..++||+-. .......+..|.+.|+.+.+.   .|.+.+.++. ..+..++||||++|
T Consensus        23 ~v~~l~~G~~n~v~~v----g~~~VlR~~~-~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           23 SVESLGEGFRNYAILV----NGDWVFRFPK-SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             CEEEEEECSSEEEEEE----TTTEEEEEES-SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eeeecCCCcceeEEEE----CCEEEEEecC-CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            3455677888889987    6788899853 223356788899999988753   2456677764 45668899999999


Q ss_pred             CChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhC-----------------------------------------------
Q 002875          688 GNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHD-----------------------------------------------  720 (872)
Q Consensus       688 g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~-----------------------------------------------  720 (872)
                      ..+.+......+..++..++.++++.|+.||+.                                               
T Consensus        98 ~~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  177 (306)
T 3tdw_A           98 QILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQ  177 (306)
T ss_dssp             EECHHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred             eECchhhhhhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence            888764433344455555566666666555542                                               


Q ss_pred             ----------CCCCcccCCCCCCCeeeCC---CCC-eeEcccccccc
Q 002875          721 ----------CYPAIPHGDLKASNIVFDE---NME-PHLAEFGFKYL  753 (872)
Q Consensus       721 ----------~~~~i~Hrdlk~~Nill~~---~~~-~ki~dfg~~~~  753 (872)
                                ..+.++|+|++|.||+++.   ++. +.|.||+.+..
T Consensus       178 ~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          178 SYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                      2235699999999999987   355 58999997643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=1.9e-07  Score=90.38  Aligned_cols=114  Identities=15%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             cccCCCCCCEEECcCC-cCcc----cCCccccCCCCCcEEECcCCcCccc----cCccccCCCCCCEEEccCCccccc--
Q 002875           37 EIFNLTSLISLDISRN-NFSG----HFPGGIQSLRNLLVLDAFSNSFSGS----VPAEISQLEHLKVLNLAGSYFSGP--  105 (872)
Q Consensus        37 ~~~~l~~L~~L~Ls~N-~i~~----~~~~~~~~l~~L~~LdL~~n~l~~~----~p~~~~~L~~L~~L~L~~n~~~~~--  105 (872)
                      .+...+.|++|+|++| .|..    .+...+...++|++|||++|.+...    +...+...++|++|+|++|.+...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3455666666666666 5542    1233455556666666666666532    122344445666677766666532  


Q ss_pred             --CCcccCCCCCCcEeeC--ccCcCCcc----CCccCCCCCCCCEEEccCccC
Q 002875          106 --IPSQFGSFKSLEFLHL--AGNLLNDQ----IPAELGMLKTVTHMEIGYNFY  150 (872)
Q Consensus       106 --~p~~~~~l~~L~~L~L--~~n~l~~~----~p~~l~~L~~L~~L~l~~n~~  150 (872)
                        +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              2345555666777777  66666443    222334446677777766654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.13  E-value=3.7e-07  Score=88.24  Aligned_cols=87  Identities=15%  Similarity=0.072  Sum_probs=35.9

Q ss_pred             CCCCCCEEECcCCcCcc----cCCccccCCCCCcEEECcCCcCccc----cCccccCCCCCCEEEc--cCCccccc----
Q 002875           40 NLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFSNSFSGS----VPAEISQLEHLKVLNL--AGSYFSGP----  105 (872)
Q Consensus        40 ~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~LdL~~n~l~~~----~p~~~~~L~~L~~L~L--~~n~~~~~----  105 (872)
                      ..++|++|+|++|.|..    .+...+...+.|++|||++|.+...    +...+...++|++|+|  ++|.+...    
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            34445555555554432    1122233334455555555544421    1223334444555555  44444321    


Q ss_pred             CCcccCCCCCCcEeeCccCcC
Q 002875          106 IPSQFGSFKSLEFLHLAGNLL  126 (872)
Q Consensus       106 ~p~~~~~l~~L~~L~L~~n~l  126 (872)
                      +...+...++|++|+|++|.+
T Consensus       143 l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeccCCCC
Confidence            112233334455555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=1.6e-06  Score=87.97  Aligned_cols=97  Identities=22%  Similarity=0.274  Sum_probs=71.7

Q ss_pred             EECCCCCCc---ccCCccccCCCCCCEEECcCCcCcc--cCCccccCCCCCcEEECcCCcCccccCccccCCC--CCCEE
Q 002875           23 LNLSHNSFS---GQFPVEIFNLTSLISLDISRNNFSG--HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLE--HLKVL   95 (872)
Q Consensus        23 L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~--~L~~L   95 (872)
                      ++++.|...   ...+....++++|++|+|++|+|.+  .+|+.+..+++|+.|||++|.+.+.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            667777433   2222233568899999999999987  4456778899999999999999864  3344444  89999


Q ss_pred             EccCCcccccCCc-------ccCCCCCCcEeeC
Q 002875           96 NLAGSYFSGPIPS-------QFGSFKSLEFLHL  121 (872)
Q Consensus        96 ~L~~n~~~~~~p~-------~~~~l~~L~~L~L  121 (872)
                      +|++|.+.+..|+       .+..+++|+.||=
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            9999999876653       3678899998873

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.09  E-value=1.3e-05  Score=82.82  Aligned_cols=134  Identities=19%  Similarity=0.116  Sum_probs=93.0

Q ss_pred             hccCCCCC-ceeeeecC-CCcEEEEEEeeccchhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          615 EAARPQSA-AGCKAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       615 ~~g~g~~~-~v~~~~~~-~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      .+..|..+ .||+.... +|..+.||+-..+  ....+.+|...|+.+. +--|-++++++.+.+..++||||++|.++.
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~--~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~  108 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS--VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAF  108 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETH--HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHH
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCC--CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcccc
Confidence            34556666 58987654 4567899986533  3456778888887774 223557888999889999999999998877


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHhhCC--------------------------------------------------
Q 002875          692 EKIRTKRDWAAKYKIVLGVARGLCFLHHDC--------------------------------------------------  721 (872)
Q Consensus       692 ~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~--------------------------------------------------  721 (872)
                      +.....  ...+..++.++++.++-||+..                                                  
T Consensus       109 ~~~~~~--~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  186 (272)
T 4gkh_A          109 QVLEEY--PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKL  186 (272)
T ss_dssp             HHHHHC--GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTT
T ss_pred             ccccCC--HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhc
Confidence            654321  1223345555555555555321                                                  


Q ss_pred             -----CCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          722 -----YPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       722 -----~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                           .+.++|+|+.+.||+++.++.+-|.||+.+.
T Consensus       187 ~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          187 LPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             CCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                 1247899999999999987777899999764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.89  E-value=9.9e-06  Score=87.46  Aligned_cols=79  Identities=9%  Similarity=-0.034  Sum_probs=55.2

Q ss_pred             hhhc-cCCCCCceeeeecC-------CCcEEEEEEeeccc---h-hHHHHHHHHHHhhccCC---CCceeEEEEEecC--
Q 002875          613 CEEA-ARPQSAAGCKAVLP-------TGITVSVKKIEWGA---T-RIKIVSEFITRIGTVRH---KNLIRLLGFCYNR--  675 (872)
Q Consensus       613 ~~~~-g~g~~~~v~~~~~~-------~g~~vavK~~~~~~---~-~~~~~~~e~~~l~~l~H---~niv~l~~~~~~~--  675 (872)
                      .+.+ +.|....+|+....       +|..+++|.-....   . ....+.+|+..++.+..   -.+.++++++.+.  
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~  104 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV  104 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence            3456 77888899988764       36789999865432   1 12456778888877743   2466788888665  


Q ss_pred             -CeeEEEEcccCCCChH
Q 002875          676 -HQAYLLYDYLPNGNLS  691 (872)
Q Consensus       676 -~~~~lv~ey~~~g~L~  691 (872)
                       +..|+||||++|..+.
T Consensus       105 ~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A          105 LGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             TSSCEEEEECCCCBCCC
T ss_pred             cCCceEEEEecCCCChh
Confidence             4578999999986654

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.66  E-value=0.00018  Score=75.27  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=90.8

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccC---CCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.++.|....+|+... ++..++||.-...  ....+..|.+.|+.+.   ...+.+.++++...+..++||||+++.
T Consensus        40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~--~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~  116 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS--YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS  116 (312)
T ss_dssp             EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG--GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred             eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc--cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence            445678899999999876 4678889987533  3566788888888774   356778899988888899999999987


Q ss_pred             ChHH-----------HhhC--C----------------------CCHHHHH---HHHH----------------HHHHHH
Q 002875          689 NLSE-----------KIRT--K----------------------RDWAAKY---KIVL----------------GVARGL  714 (872)
Q Consensus       689 ~L~~-----------~l~~--~----------------------~~~~~~~---~i~~----------------~i~~gl  714 (872)
                      .+..           .++.  .                      .+|.+..   ++..                .+.+.+
T Consensus       117 ~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l  196 (312)
T 3jr1_A          117 KNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIV  196 (312)
T ss_dssp             CCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            6521           1111  0                      1454321   1111                111111


Q ss_pred             -HHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEcccc
Q 002875          715 -CFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFG  749 (872)
Q Consensus       715 -~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg  749 (872)
                       +.|.. ...|.++|+|+.+.|++++.++ +.|.|+.
T Consensus       197 ~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          197 ADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence             23321 2356899999999999999887 8899975

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.62  E-value=8e-05  Score=81.57  Aligned_cols=75  Identities=12%  Similarity=0.002  Sum_probs=49.0

Q ss_pred             hhhhccCCCCCceeeeecC-CCcEEEEEEeeccc--------hhHHHHHHHHHHhhccCC--CCce-eEEEEEecCCeeE
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGITVSVKKIEWGA--------TRIKIVSEFITRIGTVRH--KNLI-RLLGFCYNRHQAY  679 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~~vavK~~~~~~--------~~~~~~~~e~~~l~~l~H--~niv-~l~~~~~~~~~~~  679 (872)
                      ..+.+|.|.++.||++... +|+.|+||......        ...+.+..|.+.++.+..  |..| +++.+  +.+..+
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~  111 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAV  111 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTE
T ss_pred             EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccE
Confidence            3567899999999999864 57889999864321        123345667888876642  3444 55544  344568


Q ss_pred             EEEcccCCC
Q 002875          680 LLYDYLPNG  688 (872)
Q Consensus       680 lv~ey~~~g  688 (872)
                      +||||+++.
T Consensus       112 lvmE~l~g~  120 (397)
T 2olc_A          112 TVMEDLSHL  120 (397)
T ss_dssp             EEECCCTTS
T ss_pred             EEEEeCCCc
Confidence            999999864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.61  E-value=1.5e-05  Score=74.71  Aligned_cols=85  Identities=11%  Similarity=0.111  Sum_probs=44.1

Q ss_pred             CCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCc-CccccCccccCC----CCCCEEEccCCc-ccccCCcccCCCC
Q 002875           41 LTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS-FSGSVPAEISQL----EHLKVLNLAGSY-FSGPIPSQFGSFK  114 (872)
Q Consensus        41 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~-l~~~~p~~~~~L----~~L~~L~L~~n~-~~~~~p~~~~~l~  114 (872)
                      -.+|++||++++.|+..--..+..+++|+.|+|++|. ++...-..+..+    ++|++|+|++|. ++..--..+.+++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3456666666666554333445566666666666663 443222334433    246666666653 4322222345556


Q ss_pred             CCcEeeCccCc
Q 002875          115 SLEFLHLAGNL  125 (872)
Q Consensus       115 ~L~~L~L~~n~  125 (872)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.56  E-value=2.4e-05  Score=73.38  Aligned_cols=93  Identities=13%  Similarity=0.164  Sum_probs=70.3

Q ss_pred             cCCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCc-CcccCCccccCC----CCCcEEECcCCc-Ccc
Q 002875            7 ALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNN-FSGHFPGGIQSL----RNLLVLDAFSNS-FSG   80 (872)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l----~~L~~LdL~~n~-l~~   80 (872)
                      .+|.....  -..|+.|||+++.|+..--..+..+++|++|+|++|. |+..--..+..+    ++|++|||++|. ++.
T Consensus        52 ~LP~~~~~--~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           52 HLPTGPLD--KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GSCCCSTT--CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cCCcccCC--CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            45554322  2369999999999987666678899999999999995 654322334544    369999999985 775


Q ss_pred             ccCccccCCCCCCEEEccCCc
Q 002875           81 SVPAEISQLEHLKVLNLAGSY  101 (872)
Q Consensus        81 ~~p~~~~~L~~L~~L~L~~n~  101 (872)
                      .--..+.++++|++|+|+++.
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHHhcCCCCCEEECCCCC
Confidence            555567889999999999985

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.50  E-value=0.00026  Score=75.64  Aligned_cols=135  Identities=17%  Similarity=0.201  Sum_probs=77.3

Q ss_pred             hhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccC-----CCCceeEE-E--EEecCCeeEEEEccc
Q 002875          614 EEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVR-----HKNLIRLL-G--FCYNRHQAYLLYDYL  685 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-----H~niv~l~-~--~~~~~~~~~lv~ey~  685 (872)
                      +.++.|..+.||+....+| .+++|+.....   +....|...++.+.     .|.++... |  +....+..++||||+
T Consensus        38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i  113 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRPE---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWI  113 (346)
T ss_dssp             EECC----CEEEEEEETTE-EEEEEEECSCH---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECC
T ss_pred             eeccccccCcEEEEEeCCC-CEEEEecCCCH---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEee
Confidence            3455567889999887655 48999987532   22333444444332     34444311 1  112356789999999


Q ss_pred             CCCChH-----H---------HhhC---C-------------CCHHHHH-------------------------------
Q 002875          686 PNGNLS-----E---------KIRT---K-------------RDWAAKY-------------------------------  704 (872)
Q Consensus       686 ~~g~L~-----~---------~l~~---~-------------~~~~~~~-------------------------------  704 (872)
                      +|..+.     +         .++.   .             ..|....                               
T Consensus       114 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (346)
T 2q83_A          114 EGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEID  193 (346)
T ss_dssp             CCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             cCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence            986542     0         1111   0             1332210                               


Q ss_pred             HHHHHHHHHHHHHhh----------CCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          705 KIVLGVARGLCFLHH----------DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       705 ~i~~~i~~gl~~lH~----------~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      .+..++.+++++++.          ...+.++|+|+++.||+++.++.+.|.||+.+.
T Consensus       194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          194 GFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            011123445666653          123489999999999999878889999999763

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.24  E-value=0.00072  Score=74.45  Aligned_cols=73  Identities=14%  Similarity=0.058  Sum_probs=45.1

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeec-------c-c--hhHHHHHHHHHHhh-ccCCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEW-------G-A--TRIKIVSEFITRIG-TVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~-------~-~--~~~~~~~~e~~~l~-~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.+|.|..+.||+... +++.++||....       . .  .....+..|+..+. ...+..+.+++++.  ++..++
T Consensus        38 ~i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~l  114 (420)
T 2pyw_A           38 VIKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALI  114 (420)
T ss_dssp             EEEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEE
T ss_pred             EEEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEE
Confidence            355688899999999865 567899994321       1 1  02223333333222 22234566777665  466799


Q ss_pred             EEccc-CC
Q 002875          681 LYDYL-PN  687 (872)
Q Consensus       681 v~ey~-~~  687 (872)
                      ||||+ ++
T Consensus       115 v~e~l~~g  122 (420)
T 2pyw_A          115 GMRYLEPP  122 (420)
T ss_dssp             EECCCCTT
T ss_pred             EEeecCCc
Confidence            99999 76

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.18  E-value=0.00047  Score=71.59  Aligned_cols=75  Identities=11%  Similarity=0.069  Sum_probs=54.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch-hHHHHHHHHHHhhccCC---CCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT-RIKIVSEFITRIGTVRH---KNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~-~~~~~~~e~~~l~~l~H---~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.+|.|..+.||+.++.+|+.|.||+-..... ....+..|.+.|+.+.-   --+.+.+++.    ..++||||.++
T Consensus        19 ~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l~~   94 (288)
T 3f7w_A           19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE   94 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred             EEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEeecc
Confidence            4567889999999999999999999998653322 24567888888877642   1234555542    34799999987


Q ss_pred             CCh
Q 002875          688 GNL  690 (872)
Q Consensus       688 g~L  690 (872)
                      +..
T Consensus        95 ~~~   97 (288)
T 3f7w_A           95 RPP   97 (288)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.86  E-value=0.0011  Score=70.10  Aligned_cols=74  Identities=5%  Similarity=-0.116  Sum_probs=48.7

Q ss_pred             hccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCC--ceeEEEE-----EecCCeeEEEEcccCC
Q 002875          615 EAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKN--LIRLLGF-----CYNRHQAYLLYDYLPN  687 (872)
Q Consensus       615 ~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~n--iv~l~~~-----~~~~~~~~lv~ey~~~  687 (872)
                      .++ |....||+....+|+.+++|....+....+.+..|...++.+....  +.+++..     ....+..++||||++|
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~G  111 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGG  111 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCC
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecCC
Confidence            455 7778899988888888999998744334455666777776664222  3334432     1224566889999987


Q ss_pred             CC
Q 002875          688 GN  689 (872)
Q Consensus       688 g~  689 (872)
                      ..
T Consensus       112 ~~  113 (328)
T 1zyl_A          112 RQ  113 (328)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.86  E-value=0.0045  Score=65.64  Aligned_cols=135  Identities=13%  Similarity=0.049  Sum_probs=69.4

Q ss_pred             hhccCCCCCc-eeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCC--CCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          614 EEAARPQSAA-GCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRH--KNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       614 ~~~g~g~~~~-v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H--~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      +.++.|+... +|+....+|..+++|......  .+.+..|+..++.+..  -.+.+++.+..+.+  ++|||++.+..+
T Consensus        24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~--~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~l   99 (333)
T 3csv_A           24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE--GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDALF   99 (333)
T ss_dssp             CC--------CCEEEECTTCCEEEEEECCTTT--TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCBH
T ss_pred             eECCCCCCCceEEEEEcCCCCeEEEEECCCCC--CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcch
Confidence            3444454444 567665557778787654322  1233445565555532  23456666654443  789999977666


Q ss_pred             HHHhhCC-------------------------C-CHHH--HH-------H-HH------------HHHHHHHHHHh---h
Q 002875          691 SEKIRTK-------------------------R-DWAA--KY-------K-IV------------LGVARGLCFLH---H  719 (872)
Q Consensus       691 ~~~l~~~-------------------------~-~~~~--~~-------~-i~------------~~i~~gl~~lH---~  719 (872)
                      .+++...                         . .|..  ..       . +.            ..+.+.++.+.   .
T Consensus       100 ~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~  179 (333)
T 3csv_A          100 TEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQL  179 (333)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            5433210                         0 0100  00       0 00            01111122221   1


Q ss_pred             CCCCCcccCCCCCCCeeeCCC----CCeeEccccccc
Q 002875          720 DCYPAIPHGDLKASNIVFDEN----MEPHLAEFGFKY  752 (872)
Q Consensus       720 ~~~~~i~Hrdlk~~Nill~~~----~~~ki~dfg~~~  752 (872)
                      ...+.++|+|+.+.||+++.+    ..+.|.||+.+.
T Consensus       180 ~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~  216 (333)
T 3csv_A          180 EGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAK  216 (333)
T ss_dssp             CSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCE
T ss_pred             cCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcC
Confidence            123479999999999999874    678999999764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.66  E-value=0.0013  Score=58.68  Aligned_cols=68  Identities=16%  Similarity=0.128  Sum_probs=49.2

Q ss_pred             cEEEccCccce-eccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCCeeeecCCCCccccc
Q 002875          453 ERIDLANNKLI-GSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRL  522 (872)
Q Consensus       453 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~  522 (872)
                      ..++.+++.++ ..+|..+  -++|+.|+|++|+|+.+.+..|..+++|++|+|++|++.....-.++..+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~w   79 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW   79 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHH
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHH
Confidence            36777777776 2344322  13588999999999988888899999999999999988765554344343

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.54  E-value=0.00068  Score=64.78  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             cCCCCCCEEECcCC-cCcc----cCCccccCCCCCcEEECcCCcCccccC----ccccCCCCCCEEEccCCccccc----
Q 002875           39 FNLTSLISLDISRN-NFSG----HFPGGIQSLRNLLVLDAFSNSFSGSVP----AEISQLEHLKVLNLAGSYFSGP----  105 (872)
Q Consensus        39 ~~l~~L~~L~Ls~N-~i~~----~~~~~~~~l~~L~~LdL~~n~l~~~~p----~~~~~L~~L~~L~L~~n~~~~~----  105 (872)
                      .+-+.|++|+|++| .|..    .+.+++..-+.|+.|+|++|.+....-    ..+..=+.|++|+|++|.|...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34556666666664 5431    223345556667777777666653221    2233345677777777766432    


Q ss_pred             CCcccCCCCCCcEeeCccCc---CCcc----CCccCCCCCCCCEEEccCcc
Q 002875          106 IPSQFGSFKSLEFLHLAGNL---LNDQ----IPAELGMLKTVTHMEIGYNF  149 (872)
Q Consensus       106 ~p~~~~~l~~L~~L~L~~n~---l~~~----~p~~l~~L~~L~~L~l~~n~  149 (872)
                      +-+++..-+.|++|+|++|.   +...    +...+..-+.|+.|++++|.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            22345555567777776542   2211    22233444567777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.47  E-value=0.0049  Score=54.93  Aligned_cols=55  Identities=16%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             EEECCCCCCc-ccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcC
Q 002875           22 DLNLSHNSFS-GQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSF   78 (872)
Q Consensus        22 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l   78 (872)
                      +++-+++.++ ..+|..+.  ++|++|+|++|+|+.+.++.|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666664 13343332  3466666666666655555566666666666666654

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.38  E-value=0.0075  Score=64.64  Aligned_cols=136  Identities=13%  Similarity=0.131  Sum_probs=79.0

Q ss_pred             hhhccCCCCCceeeeecC--------CCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCc-eeEEEEEecCCeeEEEEc
Q 002875          613 CEEAARPQSAAGCKAVLP--------TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL-IRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~--------~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e  683 (872)
                      .+.+..|....+|+...+        +++.|.+|+-.........+.+|.++++.+.-..+ .++++++.+    .+|||
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e  130 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ  130 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence            344566778888998865        35789999864322234556678888877653333 456766643    29999


Q ss_pred             ccCCCChHHH-----------------hhC-------CCC--HHHHHHHHHHHHH-------------------HHHHHh
Q 002875          684 YLPNGNLSEK-----------------IRT-------KRD--WAAKYKIVLGVAR-------------------GLCFLH  718 (872)
Q Consensus       684 y~~~g~L~~~-----------------l~~-------~~~--~~~~~~i~~~i~~-------------------gl~~lH  718 (872)
                      |++|..+...                 ++.       ...  |.+..++..++..                   .++++.
T Consensus       131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  210 (379)
T 3feg_A          131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR  210 (379)
T ss_dssp             CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred             EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence            9998554310                 111       112  3333344433321                   223332


Q ss_pred             ----hC-CCCCcccCCCCCCCeeeCCC----CCeeEccccccc
Q 002875          719 ----HD-CYPAIPHGDLKASNIVFDEN----MEPHLAEFGFKY  752 (872)
Q Consensus       719 ----~~-~~~~i~Hrdlk~~Nill~~~----~~~ki~dfg~~~  752 (872)
                          .. ....++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence                21 22368999999999999876    689999998764

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.36  E-value=0.0024  Score=67.44  Aligned_cols=138  Identities=14%  Similarity=0.101  Sum_probs=76.6

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCC--ceeEEEE------EecCCeeEEEEcc
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKN--LIRLLGF------CYNRHQAYLLYDY  684 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~n--iv~l~~~------~~~~~~~~lv~ey  684 (872)
                      .+.++.|....+|+....+| .+++|..... ...+.+..|+..++.+....  +.+++..      ....+..++||||
T Consensus        27 ~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~-~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~  104 (322)
T 2ppq_A           27 YKGIAEGVENSNFLLHTTKD-PLILTLYEKR-VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISF  104 (322)
T ss_dssp             EEEECC---EEEEEEEESSC-CEEEEEECC----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEEC
T ss_pred             eeccCCCcccceEEEEeCCc-cEEEEEeCCC-CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEe
Confidence            34466777788999887666 6889988642 12234455666666554222  2222211      1123567899999


Q ss_pred             cCCCChHH--------------HhhC-------C----C---CHHHHHH------------HHHHHHHHHHHHhhC----
Q 002875          685 LPNGNLSE--------------KIRT-------K----R---DWAAKYK------------IVLGVARGLCFLHHD----  720 (872)
Q Consensus       685 ~~~g~L~~--------------~l~~-------~----~---~~~~~~~------------i~~~i~~gl~~lH~~----  720 (872)
                      ++|..+..              .++.       .    .   .|.....            +...+.+.+++++..    
T Consensus       105 l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~  184 (322)
T 2ppq_A          105 LEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKD  184 (322)
T ss_dssp             CCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCS
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCccc
Confidence            99855321              0111       0    0   1322110            011234445555532    


Q ss_pred             CCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          721 CYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       721 ~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      ..++++|+|+.+.||+++.+..+.|.||+.+.
T Consensus       185 ~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          185 LPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             SCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             CCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            12479999999999999877666899999763

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.33  E-value=0.0019  Score=67.35  Aligned_cols=71  Identities=7%  Similarity=-0.029  Sum_probs=42.1

Q ss_pred             hhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCce-eEEEEEecCCeeEEEEccc-CCCCh
Q 002875          613 CEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLI-RLLGFCYNRHQAYLLYDYL-PNGNL  690 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv-~l~~~~~~~~~~~lv~ey~-~~g~L  690 (872)
                      .+.++.|....+|+.     ..+++|+-..+.........|...++.+....+. ++++++  ++.-++|+||+ ++-++
T Consensus        23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~l   95 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQTM   95 (301)
T ss_dssp             CEEEESCSSEEEEEE-----TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEEC
T ss_pred             eeEcCCcccccccee-----eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCccC
Confidence            566778888999988     5688888754322111224566666655432333 455543  33457999999 55444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.19  E-value=0.0014  Score=62.64  Aligned_cols=85  Identities=13%  Similarity=0.153  Sum_probs=35.7

Q ss_pred             cCCCCCcEEECcCC-cCccc----cCccccCCCCCCEEEccCCcccccC----CcccCCCCCCcEeeCccCcCCcc----
Q 002875           63 QSLRNLLVLDAFSN-SFSGS----VPAEISQLEHLKVLNLAGSYFSGPI----PSQFGSFKSLEFLHLAGNLLNDQ----  129 (872)
Q Consensus        63 ~~l~~L~~LdL~~n-~l~~~----~p~~~~~L~~L~~L~L~~n~~~~~~----p~~~~~l~~L~~L~L~~n~l~~~----  129 (872)
                      .+-+.|+.|+|++| .+...    +-+++..-+.|+.|+|++|.+...-    .+.+..-+.|++|+|++|.|...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            33445555555543 43311    1122333445555555555553211    12222334555555555555321    


Q ss_pred             CCccCCCCCCCCEEEccC
Q 002875          130 IPAELGMLKTVTHMEIGY  147 (872)
Q Consensus       130 ~p~~l~~L~~L~~L~l~~  147 (872)
                      +-..+..-+.|++|++++
T Consensus       118 la~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCceeEEECCC
Confidence            112233334455555543

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.07  E-value=0.0071  Score=66.37  Aligned_cols=73  Identities=14%  Similarity=0.029  Sum_probs=47.8

Q ss_pred             hhhccCCCCCceeeeecCC--------CcEEEEEEeeccchhHHHHHHHHHHhhccCCCCc-eeEEEEEecCCeeEEEEc
Q 002875          613 CEEAARPQSAAGCKAVLPT--------GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL-IRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~--------g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e  683 (872)
                      .+.++.|....+|+...++        +..|.+|+.... ...+.+..|..+++.+...++ .++++.+.+    .+|||
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e  152 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEE  152 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEEC
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEE
Confidence            4456778888999988653        578999987431 111344568888877754444 467776542    38999


Q ss_pred             ccCCCCh
Q 002875          684 YLPNGNL  690 (872)
Q Consensus       684 y~~~g~L  690 (872)
                      |++|.++
T Consensus       153 ~l~G~~l  159 (429)
T 1nw1_A          153 YIPSRPL  159 (429)
T ss_dssp             CCCEEEC
T ss_pred             EeCCccc
Confidence            9986343

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=95.89  E-value=0.0098  Score=64.02  Aligned_cols=74  Identities=9%  Similarity=-0.021  Sum_probs=43.0

Q ss_pred             hhhccCCCCCceeeeecCC---------CcEEEEEEeeccchhHHHHHHHHHHhhccCCCCc-eeEEEEEecCCeeEEEE
Q 002875          613 CEEAARPQSAAGCKAVLPT---------GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL-IRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~---------g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lv~  682 (872)
                      ...++.|....+|+....+         +..+++|+-..+.........|.+.++.+....+ .++++..  .  -++||
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~  113 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE  113 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence            3456677788899887654         2678888875432222123567777776653343 3666554  2  36899


Q ss_pred             cccCCCCh
Q 002875          683 DYLPNGNL  690 (872)
Q Consensus       683 ey~~~g~L  690 (872)
                      ||++|..+
T Consensus       114 e~i~G~~l  121 (369)
T 3c5i_A          114 EWLYGDPL  121 (369)
T ss_dssp             ECCCSEEC
T ss_pred             EEecCCcC
Confidence            99987543

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=95.62  E-value=0.015  Score=64.11  Aligned_cols=74  Identities=8%  Similarity=-0.079  Sum_probs=46.6

Q ss_pred             hhhccCCCCCceeeeecCC-CcEEEEEEeeccchhHHHHHHHHHHhhccCCCCc-eeEEEEEecCCeeEEEEcccCCCCh
Q 002875          613 CEEAARPQSAAGCKAVLPT-GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL-IRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~-g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      .+.++.|....+|+....+ +..+++|+...+....-....|..+++.+...++ .++++++.  +  .+||||++|-++
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~l  188 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYAL  188 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEEC
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCccC
Confidence            4557778888999988765 5788899874332111112567788877765555 46777763  2  359999987443

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=95.15  E-value=0.067  Score=56.57  Aligned_cols=30  Identities=13%  Similarity=0.244  Sum_probs=26.6

Q ss_pred             CCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          723 PAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       723 ~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      +.++|+|+.+.||+++.++.+.|.||+.+.
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~  235 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPM  235 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCe
Confidence            479999999999999987889999998654

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=92.43  E-value=0.16  Score=55.12  Aligned_cols=74  Identities=3%  Similarity=-0.085  Sum_probs=45.6

Q ss_pred             hhhccCCCCCceeeeecCC--------CcEEEEEEeeccchhHHHHHHHHHHhhccCCCCc-eeEEEEEecCCeeEEEEc
Q 002875          613 CEEAARPQSAAGCKAVLPT--------GITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL-IRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~--------g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e  683 (872)
                      .+.+..|....+|+...++        ++.|++|+-..+....-...+|.++++.+.-..+ .++++.+.    -+.|||
T Consensus        75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~e  150 (424)
T 3mes_A           75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIEE  150 (424)
T ss_dssp             EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEEE
T ss_pred             EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEEE
Confidence            3445667788889887653        6789999865433222223466777766643333 35555432    378999


Q ss_pred             ccCCCCh
Q 002875          684 YLPNGNL  690 (872)
Q Consensus       684 y~~~g~L  690 (872)
                      |++|..+
T Consensus       151 fI~G~~l  157 (424)
T 3mes_A          151 FIDGEPL  157 (424)
T ss_dssp             CCCSEEC
T ss_pred             EeCCccC
Confidence            9998553

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=85.74  E-value=4.8  Score=38.57  Aligned_cols=100  Identities=16%  Similarity=0.074  Sum_probs=58.9

Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccc
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI  765 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~  765 (872)
                      ||.+.|+.   ..+..+.+.++.|.+++|.-+-....+  ..+=+-|..|++..+|.+...+ +.+.   ..      ..
T Consensus        34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~V~f~~-~~s~---~~------~~  101 (229)
T 2yle_A           34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGAVTLAP-AADD---AG------EP  101 (229)
T ss_dssp             EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSCEEECC-C----------------
T ss_pred             cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCceeccc-cccc---cc------cc
Confidence            67787754   568899999999999988665221011  1222336888999998887764 2110   00      01


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCC
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLT  802 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~  802 (872)
                      . ..+|+... ...+.+.=|||+|+++|..+--+.|.
T Consensus       102 ~-~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e  136 (229)
T 2yle_A          102 P-PVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKE  136 (229)
T ss_dssp             ------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred             C-CCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCc
Confidence            1 22333321 23345668999999999988755443

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=81.78  E-value=2.4  Score=40.52  Aligned_cols=84  Identities=14%  Similarity=0.086  Sum_probs=64.5

Q ss_pred             CCCCceeEEEEEecCCeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC
Q 002875          661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN  740 (872)
Q Consensus       661 ~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~  740 (872)
                      .||+.++. ..-.+.+.+.+.|+--+.+-=...++ ..+...+++++.+++...++++..     +|--+.|+|++++.+
T Consensus        43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik-~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~f~~~  115 (215)
T 4ann_A           43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIK-SFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELFFTRD  115 (215)
T ss_dssp             CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGG-GSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEEECTT
T ss_pred             cCCcccce-EEEEcccEEEEEEEcCcccCCHHHHH-hcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEEEcCC
Confidence            68999976 56667777777777554322223333 457889999999999988777766     788899999999999


Q ss_pred             CCeeEcccccc
Q 002875          741 MEPHLAEFGFK  751 (872)
Q Consensus       741 ~~~ki~dfg~~  751 (872)
                      +.+++.=.|+.
T Consensus       116 ~~p~i~~RGik  126 (215)
T 4ann_A          116 GLPIAKTRGLQ  126 (215)
T ss_dssp             SCEEESCCEET
T ss_pred             CCEEEEEccCc
Confidence            99999988874

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=80.41  E-value=3.7  Score=39.39  Aligned_cols=83  Identities=11%  Similarity=0.103  Sum_probs=63.3

Q ss_pred             CCCCceeEEEEEecCCeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHH-HHhhCCCCCcccCCCCCCCeeeCC
Q 002875          661 RHKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLC-FLHHDCYPAIPHGDLKASNIVFDE  739 (872)
Q Consensus       661 ~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~-~lH~~~~~~i~Hrdlk~~Nill~~  739 (872)
                      .||+.  -...-.+++.+.+.|+--+++-=...++ ..+..++++++.+++.-.. +++..     +|--+.|+|+++|.
T Consensus        48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~-~~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~NL~f~~  119 (219)
T 4ano_A           48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR-KTTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPENLMFNR  119 (219)
T ss_dssp             SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH-TSCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGGEEECT
T ss_pred             cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH-hcCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCceEEEeC
Confidence            58888  3444467778777777654444444553 5688899999999988777 66654     78889999999999


Q ss_pred             CCCeeEcccccc
Q 002875          740 NMEPHLAEFGFK  751 (872)
Q Consensus       740 ~~~~ki~dfg~~  751 (872)
                      ++.+++.=.|+-
T Consensus       120 ~~~p~i~hRGi~  131 (219)
T 4ano_A          120 ALEPFFLHVGVK  131 (219)
T ss_dssp             TCCEEESCCEET
T ss_pred             CCcEEEEEcCCc
Confidence            999999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	872
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-34
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	7e-33
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	9e-33
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-32
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-32
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-30
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-29
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-29
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-28
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-28
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	9e-28
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-27
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-27
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-27
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	5e-27
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	6e-27
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-26
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	8e-26
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	9e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-25
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-25
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	7e-25
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-25
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-24
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	6e-24
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-23
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-23
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-11
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-23
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-23
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-23
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-23
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	7e-23
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-23
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-22
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-22
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-22
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-22
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	7e-22
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	9e-21
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-19
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	8e-19
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-18
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-18
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-18
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-18
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-17
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-17
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-16
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-16
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-15
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-15
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-14
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-14
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-14
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	7e-14
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-13
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-13
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-09
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	5e-13
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-12
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-12
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	9e-11
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-08
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	3e-07
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-04

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (324), Expect = 7e-34
 Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 20/246 (8%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCY-NRHQAYLLYDYLPNGN 689
            G  V+VK I+  AT    ++E  + +  +RH NL++LLG     +   Y++ +Y+  G+
Sbjct: 29  RGNKVAVKCIKNDATAQAFLAE-ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGS 87

Query: 690 LSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           L + +R++           K  L V   + +L  +      H DL A N++  E+    +
Sbjct: 88  LVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKV 144

Query: 746 AEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAG 805
           ++FG          +    + WT + E     K     DV+ FG ++ EI + GR+    
Sbjct: 145 SDFGLTKEASSTQDTGKLPVKWT-APEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 203

Query: 806 SSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSMEEALKLL 864
             L+         ++    E G      D     V +V   C     + RPS  +  + L
Sbjct: 204 IPLK---------DVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQL 254

Query: 865 SGLKPH 870
             +K H
Sbjct: 255 EHIKTH 260

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 7e-33
 Identities = 49/249 (19%), Positives = 97/249 (38%), Gaps = 23/249 (9%)

Query: 634 TVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL 690
            V+VK +   A   + +  F   +      RH N++  +G+     Q  ++  +    +L
Sbjct: 32  DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSL 90

Query: 691 SEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE 747
              +       +      I    A+G+ +LH      I H DLK++NI   E++   + +
Sbjct: 91  YHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGD 147

Query: 748 FGFKYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNG 799
           FG   +     GS   +     I W  + E      +  Y    DVY FG ++ E++T G
Sbjct: 148 FGLATVKSRWSGSHQFEQLSGSILWM-APEVIRMQDKNPYSFQSDVYAFGIVLYELMT-G 205

Query: 800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           +L  +  + +++ I  +     + +     S+    +K    +   C +    +RP   +
Sbjct: 206 QLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMK---RLMAECLKKKRDERPLFPQ 262

Query: 860 ALKLLSGLK 868
            L  +  L 
Sbjct: 263 ILASIELLA 271

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 9e-33
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 35/278 (12%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH----QAYL 680
            +     G  V+VK       R       I +   +RH+N++  +      +    Q +L
Sbjct: 20  WRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78

Query: 681 LYDYLPNGNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCY-----PAIPHGDLKASN 734
           + DY  +G+L + + R         K+ L  A GL  LH +       PAI H DLK+ N
Sbjct: 79  VSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKN 138

Query: 735 IVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNA---MKEEMYM-------- 783
           I+  +N    +A+ G       A  +           + Y A   + + + M        
Sbjct: 139 ILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKR 198

Query: 784 -DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNEN------------EVGSSS 830
            D+Y  G +  EI     +       Q    D +  +   E              + +  
Sbjct: 199 ADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRW 258

Query: 831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK 868
              + ++++  +   C  +  + R +     K LS L 
Sbjct: 259 QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 296

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 1e-32
 Identities = 46/252 (18%), Positives = 95/252 (37%), Gaps = 17/252 (6%)

Query: 626 KAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
                    V++K I  GA   +   E    +  + H  L++L G C  +    L+++++
Sbjct: 23  LGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 82

Query: 686 PNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
            +G LS+ +RT+           + L V  G   + +     + H DL A N +  EN  
Sbjct: 83  EHGCLSDYLRTQRGLFAAETLLGMCLDVCEG---MAYLEEACVIHRDLAARNCLVGENQV 139

Query: 743 PHLAEFGFKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
             +++FG          +      +     S E ++  +     DV+ FG ++ E+ + G
Sbjct: 140 IKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEG 199

Query: 800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           ++     S        ++ ++     +         +     +   C +  P DRP+   
Sbjct: 200 KIPYENRSNSE-----VVEDISTGFRLYKPRLASTHVY---QIMNHCWKERPEDRPAFSR 251

Query: 860 ALKLLSGLKPHG 871
            L+ L+ +   G
Sbjct: 252 LLRQLAEIAESG 263

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 5e-32
 Identities = 48/250 (19%), Positives = 101/250 (40%), Gaps = 25/250 (10%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY 684
                     V+VK ++ G+            +  ++H+ L+RL          Y++ +Y
Sbjct: 30  WMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI-YIITEY 88

Query: 685 LPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           + NG+L + ++T             +   +A G+ F+         H DL+A+NI+  + 
Sbjct: 89  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDT 145

Query: 741 MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM------DVYGFGEIILE 794
           +   +A+FG   L +L + +        +    + A +   Y       DV+ FG ++ E
Sbjct: 146 LSCKIADFG---LARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTE 202

Query: 795 ILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDR 854
           I+T+GR+   G +        ++  +     +    +  +E+     +  LC +  P DR
Sbjct: 203 IVTHGRIPYPGMTNPE-----VIQNLERGYRMVRPDNCPEELY---QLMRLCWKERPEDR 254

Query: 855 PSMEEALKLL 864
           P+ +    +L
Sbjct: 255 PTFDYLRSVL 264

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 4e-30
 Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 21/247 (8%)

Query: 626 KAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
                    V++K ++ G    +   +    +  +RH+ L++L          Y++ +Y+
Sbjct: 35  MGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI-YIVTEYM 93

Query: 686 PNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM 741
             G+L + ++ +            +   +A G+ ++         H DL+A+NI+  EN+
Sbjct: 94  SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENL 150

Query: 742 EPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTN 798
              +A+FG   L +  + +      +        A     +    DV+ FG ++ E+ T 
Sbjct: 151 VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTK 210

Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSM 857
           GR+   G   +         E+ ++ E G       E  + + D+   C R  P +RP+ 
Sbjct: 211 GRVPYPGMVNR---------EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTF 261

Query: 858 EEALKLL 864
           E     L
Sbjct: 262 EYLQAFL 268

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 1e-29
 Identities = 37/246 (15%), Positives = 84/246 (34%), Gaps = 17/246 (6%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY 684
                     V++K I+ G+       E    +  + H+ L++L G C  +   +++ +Y
Sbjct: 21  KYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 80

Query: 685 LPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM 741
           + NG L   +R  R         ++   V   + +L         H DL A N + ++  
Sbjct: 81  MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQG 137

Query: 742 EPHLAEFGFKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEILTN 798
              +++FG        + +      +       E     K     D++ FG ++ EI + 
Sbjct: 138 VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSL 197

Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           G++     +            +     +       +++     +   C      +RP+ +
Sbjct: 198 GKMPYERFTNSE-----TAEHIAQGLRLYRPHLASEKVY---TIMYSCWHEKADERPTFK 249

Query: 859 EALKLL 864
             L  +
Sbjct: 250 ILLSNI 255

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (293), Expect = 2e-29
 Identities = 43/253 (16%), Positives = 98/253 (38%), Gaps = 25/253 (9%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
             I V++K ++ G T  K   +F++     G   H N+I L G         ++ +++ N
Sbjct: 53  REIFVAIKTLKSGYTE-KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMEN 111

Query: 688 GNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G+L   +R             ++ G+A G+ +L         H DL A NI+ + N+   
Sbjct: 112 GSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCK 168

Query: 745 LAEFGF-KYLTQLADGSFPAKIAWTESGEFYNA---MKEEMYM---DVYGFGEIILEILT 797
           +++FG  ++L               +    + A   ++   +    DV+ +G ++ E+++
Sbjct: 169 VSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 228

Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM 857
            G       + Q+     ++  +  +  +         +     + L C +   + RP  
Sbjct: 229 YGERPYWDMTNQD-----VINAIEQDYRLPPPMDCPSALH---QLMLDCWQKDRNHRPKF 280

Query: 858 EEALKLLSGLKPH 870
            + +  L  +  +
Sbjct: 281 GQIVNTLDKMIRN 293

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 1e-28
 Identities = 51/251 (20%), Positives = 96/251 (38%), Gaps = 21/251 (8%)

Query: 626 KAVLP-TGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY 684
           + V     +TV+VK ++     ++   +    +  ++H NL++LLG C      Y++ ++
Sbjct: 35  EGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 94

Query: 685 LPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           +  GNL + +R              +   ++  + +L         H DL A N +  EN
Sbjct: 95  MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGEN 151

Query: 741 MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILT 797
               +A+FG   L      +  A   +        ++    +    DV+ FG ++ EI T
Sbjct: 152 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 211

Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPS 856
            G     G  L          ++Y   E        +   + V ++   C +  PSDRPS
Sbjct: 212 YGMSPYPGIDLS---------QVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPS 262

Query: 857 MEEALKLLSGL 867
             E  +    +
Sbjct: 263 FAEIHQAFETM 273

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 3e-28
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 26/246 (10%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
             I V++K ++ G  +     E +        + +  ++RL+G C       L+ +    
Sbjct: 35  KQIDVAIKVLKQGTEK-ADTEEMMREAQIMHQLDNPYIVRLIGVCQAEAL-MLVMEMAGG 92

Query: 688 GNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G L + +  KR     +   +++  V+ G+ +L         H DL A N++        
Sbjct: 93  GPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAK 149

Query: 745 LAEFGFKYLTQLADGSFPAKIAWTESGEFY--NAMKEEMYM---DVYGFGEIILEILTNG 799
           +++FG        D  + A+ A     ++Y    +    +    DV+ +G  + E L+ G
Sbjct: 150 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG 209

Query: 800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
           +                  E+    E G       E    +  +   C      DRP   
Sbjct: 210 QKPYKKMKGP---------EVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFL 260

Query: 859 EALKLL 864
              + +
Sbjct: 261 TVEQRM 266

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 9e-28
 Identities = 47/265 (17%), Positives = 86/265 (32%), Gaps = 37/265 (13%)

Query: 630 PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
              +TV+VK ++  A    R  ++SE         H N++ LLG C       ++ +Y  
Sbjct: 51  DAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCC 110

Query: 687 NGNLSEKIRTKR--------------------DWAAKYKIVLGVARGLCFLHHDCYPAIP 726
            G+L   +R KR                    D          VA+G+ FL         
Sbjct: 111 YGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CI 167

Query: 727 HGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMD-- 784
           H DL A NI+        + +FG     +          A                    
Sbjct: 168 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE 227

Query: 785 --VYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
             V+ +G  + E+ + G     G  + +K    +       +   + + +        D+
Sbjct: 228 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMY-------DI 280

Query: 843 ALLCTRSTPSDRPSMEEALKLLSGL 867
              C  + P  RP+ ++ ++L+   
Sbjct: 281 MKTCWDADPLKRPTFKQIVQLIEKQ 305

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-27
 Identities = 55/252 (21%), Positives = 91/252 (36%), Gaps = 29/252 (11%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCY-NRHQAYLLYDYLP 686
             I  +VK +    T I  VS+F+T         H N++ LLG C  +     ++  Y+ 
Sbjct: 54  KKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK 112

Query: 687 NGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           +G+L   IR +             L VA+G+            H DL A N + DE    
Sbjct: 113 HGDLRNFIRNETHNPTVKDLIGFGLQVAKGM---KFLASKKFVHRDLAARNCMLDEKFTV 169

Query: 744 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM--------DVYGFGEIILEI 795
            +A+FG      + D  F +    T +      M  E           DV+ FG ++ E+
Sbjct: 170 KVADFGLA--RDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 227

Query: 796 LTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP 855
           +T G       +  +     +   +     +       D +    +V L C       RP
Sbjct: 228 MTRGAPPYPDVNTFD-----ITVYLLQGRRLLQPEYCPDPLY---EVMLKCWHPKAEMRP 279

Query: 856 SMEEALKLLSGL 867
           S  E +  +S +
Sbjct: 280 SFSELVSRISAI 291

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (276), Expect = 3e-27
 Identities = 53/273 (19%), Positives = 104/273 (38%), Gaps = 51/273 (18%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
               V+VK ++  A+   + ++F           + N+++LLG C       LL++Y+  
Sbjct: 42  PFTMVAVKMLKEEASA-DMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAY 100

Query: 688 GNLSEKIRTKR--------------------------DWAAKYKIVLGVARGLCFLHHDC 721
           G+L+E +R+                              A +  I   VA G+ +L    
Sbjct: 101 GDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK 160

Query: 722 YPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEM 781
                H DL   N +  ENM   +A+FG   L++    +   K    ++        E +
Sbjct: 161 ---FVHRDLATRNCLVGENMVVKIADFG---LSRNIYSADYYKADGNDAIPIRWMPPESI 214

Query: 782 YM-------DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD 834
           +        DV+ +G ++ EI + G     G + +      ++  + + N +    +   
Sbjct: 215 FYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE-----VIYYVRDGNILACPENCPL 269

Query: 835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
           E+    ++  LC    P+DRPS     ++L  +
Sbjct: 270 ELY---NLMRLCWSKLPADRPSFCSIHRILQRM 299

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (276), Expect = 4e-27
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 22/243 (9%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDY 684
           +     V++KK+ +   +     + I +    +  +RH N I+  G     H A+L+ +Y
Sbjct: 37  VRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY 96

Query: 685 LPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
                       K+         +  G  +GL +LH      + H D+KA NI+  E   
Sbjct: 97  CLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGL 153

Query: 743 PHLAEFGFKYLTQLAD---GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
             L +FG   +   A+   G+ P  +A  E     +  + +  +DV+  G   +E+    
Sbjct: 154 VKLGDFGSASIMAPANSFVGT-PYWMAP-EVILAMDEGQYDGKVDVWSLGITCIELAE-R 210

Query: 800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           +      +     +  L     NE+    S    +  +   +    C +  P DRP+ E 
Sbjct: 211 KPPLFNMN----AMSALYHIAQNESPALQSGHWSEYFR---NFVDSCLQKIPQDRPTSEV 263

Query: 860 ALK 862
            LK
Sbjct: 264 LLK 266

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 5e-27
 Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 24/245 (9%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
              TV+VK ++  A    +  E +        + +  ++R++G C       L+ +    
Sbjct: 33  VVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESW-MLVMEMAEL 91

Query: 688 GNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           G L++ ++  R        ++V  V+ G+ +L         H DL A N++        +
Sbjct: 92  GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKI 148

Query: 746 AEFGF------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           ++FG             A       + W  + E  N  K     DV+ FG ++ E  + G
Sbjct: 149 SDFGLSKALRADENYYKAQTHGKWPVKWY-APECINYYKFSSKSDVWSFGVLMWEAFSYG 207

Query: 800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           +    G          +   +     +G  +    E+    D+  LC      +RP    
Sbjct: 208 QKPYRGMKGSE-----VTAMLEKGERMGCPAGCPREMY---DLMNLCWTYDVENRPGFAA 259

Query: 860 ALKLL 864
               L
Sbjct: 260 VELRL 264

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 6e-27
 Identities = 47/266 (17%), Positives = 87/266 (32%), Gaps = 42/266 (15%)

Query: 631 TGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
             I V+VK ++  A    R  ++SE         H+N++ LLG C      YL+++Y   
Sbjct: 66  VSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCY 125

Query: 688 GNLSEKIRTKR-------------------------DWAAKYKIVLGVARGLCFLHHDCY 722
           G+L   +R+KR                          +         VA+G+ FL     
Sbjct: 126 GDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF--- 182

Query: 723 PAIPHGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWT---ESGEFYNAMK 778
            +  H DL A N++        + +FG  + +   ++              + E      
Sbjct: 183 KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGI 242

Query: 779 EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL 838
             +  DV+ +G ++ EI + G     G  +       +      +    ++  +      
Sbjct: 243 YTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIY----- 297

Query: 839 VLDVALLCTRSTPSDRPSMEEALKLL 864
              +   C       RPS       L
Sbjct: 298 --IIMQSCWAFDSRKRPSFPNLTSFL 321

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 2e-26
 Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 22/246 (8%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
             + V++K  +   T   +  +F+          H ++++L+G        +++ +    
Sbjct: 34  PALAVAIKTCK-NCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTL 91

Query: 688 GNLSE---KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G L       +   D A+       ++  L +L         H D+ A N++   N    
Sbjct: 92  GELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVK 148

Query: 745 LAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM---DVYGFGEIILEILTNGRL 801
           L +FG     + +     +K           ++    +    DV+ FG  + EIL +G  
Sbjct: 149 LGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVK 208

Query: 802 TNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEAL 861
              G    +     ++G + N   +    +    +     +   C    PS RP   E  
Sbjct: 209 PFQGVKNND-----VIGRIENGERLPMPPNCPPTLY---SLMTKCWAYDPSRRPRFTELK 260

Query: 862 KLLSGL 867
             LS +
Sbjct: 261 AQLSTI 266

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 8e-26
 Identities = 52/262 (19%), Positives = 101/262 (38%), Gaps = 28/262 (10%)

Query: 625 CKAVLPTG-----ITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRH 676
            K +L T      + V++K ++ G T   R+  + E    +G   H N+IRL G      
Sbjct: 24  YKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGE-AGIMGQFSHHNIIRLEGVISKYK 82

Query: 677 QAYLLYDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 733
              ++ +Y+ NG L + +R K           ++ G+A G+    +       H DL A 
Sbjct: 83  PMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGM---KYLANMNYVHRDLAAR 139

Query: 734 NIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTESG----EFYNAMKEEMYMDVYGF 788
           NI+ + N+   +++FG  + L    + ++              E  +  K     DV+ F
Sbjct: 140 NILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSF 199

Query: 789 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTR 848
           G ++ E++T G       S         + +  N+     +    D    +  + + C +
Sbjct: 200 GIVMWEVMTYGERPYWELSNHE------VMKAINDGFRLPTPM--DCPSAIYQLMMQCWQ 251

Query: 849 STPSDRPSMEEALKLLSGLKPH 870
              + RP   + + +L  L   
Sbjct: 252 QERARRPKFADIVSILDKLIRA 273

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 9e-26
 Identities = 59/264 (22%), Positives = 100/264 (37%), Gaps = 37/264 (14%)

Query: 633 ITVSVKKIEWGATRIKIVSEFITRIGTV----RHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
           +  ++K+++  A++     +F   +  +     H N+I LLG C +R   YL  +Y P+G
Sbjct: 38  MDAAIKRMKEYASK-DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHG 96

Query: 689 NLSEKIRTKR------------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL 730
           NL + +R  R                             VARG+ +L         H DL
Sbjct: 97  NLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDL 153

Query: 731 KASNIVFDENMEPHLAEFGF--KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGF 788
            A NI+  EN    +A+FG        +        + W    E  N        DV+ +
Sbjct: 154 AARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAI-ESLNYSVYTTNSDVWSY 212

Query: 789 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTR 848
           G ++ EI++ G     G +        L  ++     +    +  DE+    D+   C R
Sbjct: 213 GVLLWEIVSLGGTPYCGMTCAE-----LYEKLPQGYRLEKPLNCDDEVY---DLMRQCWR 264

Query: 849 STPSDRPSMEEALKLLSGLKPHGK 872
             P +RPS  + L  L+ +    K
Sbjct: 265 EKPYERPSFAQILVSLNRMLEERK 288

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-25
 Identities = 43/274 (15%), Positives = 89/274 (32%), Gaps = 44/274 (16%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
            P+G+ ++ K I     +  I ++ I  +          ++   G  Y+  +  +  +++
Sbjct: 28  KPSGLVMARKLIH-LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHM 86

Query: 686 PNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
             G+L + ++           K+ + V +GL +L       I H D+K SNI+ +   E 
Sbjct: 87  DGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEI 144

Query: 744 HLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLT 802
            L +FG    L      SF    ++  S E        +  D++  G  ++E+       
Sbjct: 145 KLCDFGVSGQLIDSMANSFVGTRSYM-SPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 203

Query: 803 NAGSSLQ--------------------NKPIDGLLGEMYNENEVGSSSSLQDEI------ 836
               + +                      P   L     +     +   L D I      
Sbjct: 204 PPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPP 263

Query: 837 --------KLVLDVALLCTRSTPSDRPSMEEALK 862
                       D    C    P++R  +++ + 
Sbjct: 264 KLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 297

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 4e-25
 Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 44/271 (16%)

Query: 626 KAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTV----RHKNLIRLLGFCYNRHQAYLL 681
           K        V+VK ++  AT  K +S+ I+ +  +    +HKN+I LLG C      Y++
Sbjct: 39  KDKPNRVTKVAVKMLKSDATE-KDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVI 97

Query: 682 YDYLPNGNLSEKIRTKR------------------DWAAKYKIVLGVARGLCFLHHDCYP 723
            +Y   GNL E ++ +R                             VARG+ +L      
Sbjct: 98  VEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---K 154

Query: 724 AIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM 783
              H DL A N++  E+    +A+F    L +        K              E ++ 
Sbjct: 155 KCIHRDLAARNVLVTEDNVMKIADF---GLARDIHHIDYYKKTTNGRLPVKWMAPEALFD 211

Query: 784 -------DVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI 836
                  DV+ FG ++ EI T G     G      P++ L   +   + +   S+  +E+
Sbjct: 212 RIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-----PVEELFKLLKEGHRMDKPSNCTNEL 266

Query: 837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL 867
                +   C  + PS RP+ ++ ++ L  +
Sbjct: 267 Y---MMMRDCWHAVPSQRPTFKQLVEDLDRI 294

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 7e-25
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 28/251 (11%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQA--YLLYD 683
              G  +  K++++G+         ++ +     ++H N++R      +R     Y++ +
Sbjct: 26  KSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVME 85

Query: 684 YLPNGNLSEKIRTKR------DWAAKYKIVLGVARGLCFLH--HDCYPAIPHGDLKASNI 735
           Y   G+L+  I          D     +++  +   L   H   D    + H DLK +N+
Sbjct: 86  YCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANV 145

Query: 736 VFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEI 791
             D      L +FG  + L    D SF      T    S E  N M      D++  G +
Sbjct: 146 FLDGKQNVKLGDFGLARILNH--DTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 203

Query: 792 ILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTP 851
           + E+           S +      L G++             DE+    ++         
Sbjct: 204 LYELCA-LMPPFTAFSQKE-----LAGKIREGKFRRIPYRYSDELN---EIITRMLNLKD 254

Query: 852 SDRPSMEEALK 862
             RPS+EE L+
Sbjct: 255 YHRPSVEEILE 265

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  105 bits (262), Expect = 8e-25
 Identities = 70/392 (17%), Positives = 132/392 (33%), Gaps = 49/392 (12%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
             E +   L   + +    V   +L  + +L   R         G++ L NL  ++  +N
Sbjct: 21  LAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             +   P  +  L  L  + +  +  +   P                  L         +
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLAN---------LTNLTGLTLFNNQITDI 125

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
                   +       N    +  +S +  L         +  K L+NLT LE L +  N
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           +         +++T L+SL  ++N++S   P       NL  LSL  N++      +L  
Sbjct: 186 K--VSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLAS 239

Query: 257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGV--------- 307
           L +L  L + NN  S   P  L   +KL  + +  N  +   P    +            
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 308 -----------LFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDI 356
                      L  L L+ NN +      +S+ + L RL   +N  S       + L +I
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 357 NYIDLSRNGFTGGIPTDINQASKLEYFNVSNN 388
           N++    N  +   P  +   +++    +++ 
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  102 bits (254), Expect = 7e-24
 Identities = 62/385 (16%), Positives = 146/385 (37%), Gaps = 57/385 (14%)

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
            ++E     +   N++ ++ +  ++L ++ +L   R  +  +       +  L  ++ S+
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE--------------------------- 252
           N+L+   P    +L  L  + +  N+++   P                            
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 253 ---------SLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDIC 303
                    ++  + +L  L        G+   +L   + L  ++    + N      + 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 304 SGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSR 363
           +     + ++ +NN    ++P     ++L  L L  N          + L ++  +DL+ 
Sbjct: 194 AKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 364 NGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFK 423
           N  +   P  ++  +KL    +  N ++  + P    +  +    +    N   ++ P  
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELN---ENQLEDISPIS 304

Query: 424 SCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSH 483
           + K+++ +  + NN+S   P  VS+  +L+R+  ANNK+  S    LA L  +  L   H
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGH 360

Query: 484 NSLSGQIPAKFGSCSSLTVLNVSFN 508
           N +S   P    + + +T L ++  
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.0 bits (227), Expect = 2e-20
 Identities = 68/349 (19%), Positives = 122/349 (34%), Gaps = 29/349 (8%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
           + N L  +N S+N  +   P  + NLT L+ + ++ N  +   P    +    L L    
Sbjct: 64  YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
            +    +    +        N      +    +          +     L N        
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT----- 176

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
                    +  +  + +    L  ++ ++ L      +S   P     LT L+ L L  
Sbjct: 177 ------LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNG 228

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
           NQL        + +T L  LDL++N++S   P   + L  L  L L  N++S   P  L 
Sbjct: 229 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 282

Query: 256 QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFS 315
            L +L  L +  N      P +      L ++ +  NN +   P    +   L +L   +
Sbjct: 283 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVSSLTK--LQRLFFAN 338

Query: 316 NNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRN 364
           N  +     SL+N +++  L    N  S   PL  + L  I  + L+  
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 4e-19
 Identities = 60/340 (17%), Positives = 116/340 (34%), Gaps = 31/340 (9%)

Query: 158 LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDL 217
           +  ++ +  ++ +   L+   P  L NLTKL  + +  NQ+A   P       T  +L  
Sbjct: 62  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 218 SDNRLSGPIPE------------SFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFI 265
           +      P+              + +D+  L  L+ +     G     L  L +L  L  
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 266 WNNYFSGSLPENLGRNSKLRWV-DVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSP 324
            +   +     ++            + N  +   P  I +   L +L L  N        
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKDI--G 235

Query: 325 SLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFN 384
           +L++ ++L  L L +N  S   P   S L  +  + L  N  +   P        L    
Sbjct: 236 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-----GLTALT 288

Query: 385 VSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPE 444
                +      +   +L +L   +    NI+  + P  S   +  +    N +S     
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNKVSD--VS 345

Query: 445 SVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHN 484
           S++N   +  +   +N++    P  LA L  +  L L+  
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 7e-10
 Identities = 55/330 (16%), Positives = 107/330 (32%), Gaps = 41/330 (12%)

Query: 225 PIPESFAD--LKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNS 282
           PI + F D  L       L    ++ TV ++   L  +  L         S+ + +   +
Sbjct: 11  PINQIFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLN 66

Query: 283 KLRWVDVSTNNFNGSIP----------PDICSGGVLFKLILFSNNFTGSLSPSLSNCSSL 332
            L  ++ S N      P              +       +    N TG    +       
Sbjct: 67  NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 333 VRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLG 392
               L + +         S +  ++ +   +    G   TD+   + L      +     
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 393 GMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVEL 452
               +    L +L++  A+   I+  + P     ++  +  + N L      ++++   L
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQLKD--IGTLASLTNL 243

Query: 453 ERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIP--------------------A 492
             +DLANN++    P  L+ L  L  L L  N +S   P                    +
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 493 KFGSCSSLTVLNVSFNDISGSIPSGKVLRL 522
              +  +LT L + FN+IS   P   + +L
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPVSSLTKL 331

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-24
 Identities = 47/246 (19%), Positives = 97/246 (39%), Gaps = 23/246 (9%)

Query: 631 TGITVSVKKIEWG-ATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
             ++V+VK ++    ++ + + +FI  +    ++ H+NLIRL G         ++ +  P
Sbjct: 35  KTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPM-KMVTELAP 93

Query: 687 NGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
            G+L +++R  +         +  + VA G+ +L         H DL A N++       
Sbjct: 94  LGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLV 150

Query: 744 HLAEFGFKYLTQLADGSFPAK--IAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTN 798
            + +FG        D  +  +       +     ++K   +    D + FG  + E+ T 
Sbjct: 151 KIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 210

Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           G+    G +        +L ++  E E       +D  + + +V + C    P DRP+  
Sbjct: 211 GQEPWIGLNGSQ-----ILHKIDKEGE--RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFV 263

Query: 859 EALKLL 864
                L
Sbjct: 264 ALRDFL 269

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 6e-24
 Identities = 46/258 (17%), Positives = 92/258 (35%), Gaps = 31/258 (12%)

Query: 630 PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
                V++K +   A+   RI+ ++E  + +      +++RLLG         ++ + + 
Sbjct: 48  EPETRVAIKTVNEAASMRERIEFLNE-ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMT 106

Query: 687 NGNLSEKIRTKR------------DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 734
            G+L   +R+ R              +   ++   +A G+ +L+ +      H DL A N
Sbjct: 107 RGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARN 163

Query: 735 IVFDENMEPHLAEFGFKYLTQLADGSFPAKIA----WTESGEFYNAMKEEMYMDVYGFGE 790
            +  E+    + +FG        D               S E         Y DV+ FG 
Sbjct: 164 CMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGV 223

Query: 791 IILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRST 850
           ++ EI T       G S +      +L  +     +    +  D +    ++  +C +  
Sbjct: 224 VLWEIATLAEQPYQGLSNEQ-----VLRFVMEGGLLDKPDNCPDMLF---ELMRMCWQYN 275

Query: 851 PSDRPSMEEALKLLSGLK 868
           P  RPS  E +  +    
Sbjct: 276 PKMRPSFLEIISSIKEEM 293

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  100 bits (251), Expect = 1e-23
 Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 22/244 (9%)

Query: 629 LPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
             TG   + K +     + +  +  E I  +  +RH  L+ L     + ++  ++Y+++ 
Sbjct: 48  RATGNNFAAKFVMTPHESDKETVRKE-IQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMS 106

Query: 687 NGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF--DENM 741
            G L EK+  +          + +  V +GLC +H +      H DLK  NI+F    + 
Sbjct: 107 GGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSN 163

Query: 742 EPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
           E  L +FG   +L            A   + E         Y D++  G +   +L+ G 
Sbjct: 164 ELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLS-GL 222

Query: 801 LTNAGSSLQN--KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
               G +     + +      M +    G S   +D I+ +L          P+ R ++ 
Sbjct: 223 SPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLA-------DPNTRMTIH 275

Query: 859 EALK 862
           +AL+
Sbjct: 276 QALE 279

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 99.8 bits (247), Expect = 2e-23
 Identities = 64/269 (23%), Positives = 100/269 (37%), Gaps = 4/269 (1%)

Query: 277 NLGRNSKLRWVDVSTNNFNG--SIPPDICSGGVLFKLILFSN-NFTGSLSPSLSNCSSLV 333
              +  ++  +D+S  N      IP  + +   L  L +    N  G + P+++  + L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 334 RLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGG 393
            L +   + SG IP   SQ+  +  +D S N  +G +P  I+    L       N  + G
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISG 163

Query: 394 MIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELE 453
            IP    S   L      + N      P               N+       +    +  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 454 RIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGS 513
           +        +      +     L  LDL +N + G +P        L  LNVSFN++ G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 514 IPSGKVLRLMGSSAYAGNPKLCGAPLQPC 542
           IP G  L+    SAYA N  LCG+PL  C
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.0 bits (198), Expect = 5e-17
 Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 5/259 (1%)

Query: 20  LVDLNLSHNSFSGQFPV--EIFNLTSLISLDISRN-NFSGHFPGGIQSLRNLLVLDAFSN 76
           + +L+LS  +    +P+   + NL  L  L I    N  G  P  I  L  L  L     
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
           + SG++P  +SQ++ L  L+ + +  SG +P    S  +L  +   GN ++  IP   G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
              +                       + ++D++           L    K         
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAK 230

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
                   +      L  LDL +NR+ G +P+    LK L  L++ +N + G +P+    
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN 289

Query: 257 LPSLEILFIWNNYFSGSLP 275
           L   ++    NN      P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 60/266 (22%), Positives = 103/266 (38%), Gaps = 7/266 (2%)

Query: 87  SQLEHLKVLNLAGSYFSG--PIPSQFGSFKSLEFLHLAGNL-LNDQIPAELGMLKTVTHM 143
           +Q   +  L+L+G       PIPS   +   L FL++ G   L   IP  +  L  + ++
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 144 EIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP 203
            I +    G IP  L  +  +  LD +   LSG++P  +S+L  L  +    N+++G +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 204 WEFSRVTTLKS-LDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEI 262
             +   + L + + +S NRL+G IP +FA+L    +                        
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL--FGSDKNTQ 224

Query: 263 LFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSL 322
                          +G +  L  +D+  N   G++P  +     L  L +  NN  G +
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 323 SPSLSNCSSLVRLRLEDNSFSGEIPL 348
            P   N          +N      PL
Sbjct: 285 -PQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 59/289 (20%), Positives = 106/289 (36%), Gaps = 47/289 (16%)

Query: 40  NLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG 99
               + +LD+S  N    +P                      +P+ ++ L +L  L + G
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFLYIGG 85

Query: 100 SY-FSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQL 158
                GPIP        L +L++    ++  IP  L  +KT+  ++  YN   G +P  +
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 159 GNMSEVQYLDIAGANLSGSIPKELSNLTKLES-LFLFRNQLAGQVPWEFSRVTTLKSLDL 217
            ++  +  +   G  +SG+IP    + +KL + + + RN+L G++P  F+ +        
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 218 SD----------------------NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLV 255
            +                                    KNL  L L  N + GT+P+ L 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 256 QLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICS 304
           QL  L  L +  N   G +P+  G   +      + N      P   C+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.1 bits (149), Expect = 7e-11
 Identities = 51/264 (19%), Positives = 91/264 (34%), Gaps = 5/264 (1%)

Query: 183 SNLTKLESLFLFRNQLAG--QVPWEFSRVTTLKSLDLSDN-RLSGPIPESFADLKNLRLL 239
           +   ++ +L L    L     +P   + +  L  L +     L GPIP + A L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 240 SLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIP 299
            + +  +SG +P+ L Q+ +L  L    N  SG+LP ++     L  +    N  +G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 300 PDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYI 359
               S   LF  +  S N         +  +  +       +                  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTG-KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 360 DLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNL 419
                         +  +  L   ++ NN ++ G +P     L  L + + S  N+ G +
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 420 PPFKSCKSISVIESHMNNLSGTIP 443
           P   + +   V     N      P
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSP 308

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 3e-23
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 27/247 (10%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
             T   V+VK ++     +         I     + H+N+++  G     +  YL  +Y 
Sbjct: 27  RVTEEAVAVKIVDM-KRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYC 85

Query: 686 PNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
             G L ++I            +    +  G+ +LH      I H D+K  N++ DE    
Sbjct: 86  SGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNL 142

Query: 744 HLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNA----MKEEMY---MDVYGFGEIILEI 795
            +++FG               K+  T     Y A     + E +   +DV+  G ++  +
Sbjct: 143 KISDFGLATVFRYNNRERLLNKMCGT---LPYVAPELLKRREFHAEPVDVWSCGIVLTAM 199

Query: 796 LTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP 855
           L      +  S    +  D    + Y        S+    +  +L          PS R 
Sbjct: 200 LAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVE-------NPSARI 252

Query: 856 SMEEALK 862
           ++ +  K
Sbjct: 253 TIPDIKK 259

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 4e-23
 Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 31/250 (12%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
             T +  + K I+      + + +++  I    +  H N+++LL   Y  +  ++L ++ 
Sbjct: 34  KETSVLAAAKVID--TKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC 91

Query: 686 PNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
             G +   +         +    +       L +LH      I H DLKA NI+F  + +
Sbjct: 92  AGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGD 148

Query: 743 PHLAEFGF-KYLTQLAD--GSFPAKIAWTESGEFYNAMKEEMYM----DVYGFGEIILEI 795
             LA+FG     T+      SF     W           ++       DV+  G  ++E+
Sbjct: 149 IKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 208

Query: 796 LTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL---VLDVALLCTRSTPS 852
                  +   +            +  +       +L    +      D    C      
Sbjct: 209 AE-IEPPHHELNPM---------RVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVD 258

Query: 853 DRPSMEEALK 862
            R +  + L+
Sbjct: 259 ARWTTSQLLQ 268

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 4e-23
 Identities = 49/250 (19%), Positives = 88/250 (35%), Gaps = 27/250 (10%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
             I V++K++   AT  K   E +       +V + ++ RLLG C       L+   +P 
Sbjct: 37  VKIPVAIKELR-EATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTV-QLITQLMPF 94

Query: 688 GNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           G L + +R  +            + +A+G+ +L       + H DL A N++        
Sbjct: 95  GCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVK 151

Query: 745 LAEFGFKYLTQLADGSFPAK-----IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           + +FG   L    +  + A+     I W  + E           DV+ +G  + E++T G
Sbjct: 152 ITDFGLAKLLGAEEKEYHAEGGKVPIKW-MALESILHRIYTHQSDVWSYGVTVWELMTFG 210

Query: 800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPSDRPSME 858
                G             E+ +  E G            V  + + C       RP   
Sbjct: 211 SKPYDGIPAS---------EISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFR 261

Query: 859 EALKLLSGLK 868
           E +   S + 
Sbjct: 262 ELIIEFSKMA 271

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.6 bits (245), Expect = 5e-23
 Identities = 38/240 (15%), Positives = 85/240 (35%), Gaps = 15/240 (6%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
             +  T   K ++   T   +V + I+ +   RH+N++ L     +  +  ++++++   
Sbjct: 27  TSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGL 86

Query: 689 NLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
           ++ E+I T     +       V  V   L FLH      I H D++  NI++       +
Sbjct: 87  DIFERINTSAFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTI 143

Query: 746 AEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRLT 802
               F    QL  G     +            + ++     D++  G ++  +L+ G   
Sbjct: 144 KIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLS-GINP 202

Query: 803 NAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
               + Q      ++  + N        + ++     +D            R +  EAL+
Sbjct: 203 FLAETNQQ-----IIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (241), Expect = 7e-23
 Identities = 41/238 (17%), Positives = 89/238 (37%), Gaps = 19/238 (7%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
           +   +++K +         V   + R       +RH N++RL G+ ++  + YL+ +Y P
Sbjct: 30  SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAP 89

Query: 687 NGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
            G +  +++     D       +  +A  L + H      + H D+K  N++     E  
Sbjct: 90  LGTVYRELQKLSKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELK 146

Query: 745 LAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
           +A+FG+      +  +           E       +  +D++  G +  E L  G+    
Sbjct: 147 IADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV-GKPPFE 205

Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
            ++ Q         +  +  E      + +  +   D+     +  PS RP + E L+
Sbjct: 206 ANTYQE------TYKRISRVEFTFPDFVTEGAR---DLISRLLKHNPSQRPMLREVLE 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.8 bits (242), Expect = 8e-23
 Identities = 50/280 (17%), Positives = 96/280 (34%), Gaps = 13/280 (4%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 269
                LDL +N+++      F +LKNL  L L+ N++S   P +   L  LE L++  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 270 FSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNC 329
               LPE + +  +   V  +          +  +  ++ +L       +G  + +    
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
             L  +R+ D + +    +     P +  + L  N  T      +   + L    +S N 
Sbjct: 150 KKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 390 KLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSG------TIP 443
                  +   + P L+    +   +          K I V+  H NN+S         P
Sbjct: 207 ISAVDNGSLANT-PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 444 ESVSNCVELERIDLANNKL--IGSIPEVLARLPVLGVLDL 481
              +       + L +N +      P     + V   + L
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.6 bits (213), Expect = 5e-19
 Identities = 50/281 (17%), Positives = 100/281 (35%), Gaps = 17/281 (6%)

Query: 129 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL 188
           ++P +L        +++  N           N+  +  L +    +S   P   + L KL
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 189 ESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL--MYNEM 246
           E L+L +NQL          +  L+     +N ++      F  L  + ++ L     + 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 247 SGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGG 306
           SG    +   +  L  + I +   + ++P+ L  +  L  + +  N         +    
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLN 195

Query: 307 VLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGF 366
            L KL L  N+ +   + SL+N   L  L L +N    ++P   +    I  + L  N  
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 254

Query: 367 TG------GIPTDINQASKLEYFNVSNNPKLGGMIPAQTWS 401
           +         P    + +     ++ +NP     I   T+ 
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.9 bits (206), Expect = 4e-18
 Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 11/259 (4%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
              +   L+L +N  +     +  NL +L +L +  N  S   PG    L  L  L    
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           N            L+ L+V     +     + +       +E L       +        
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQ 147

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
            +K ++++ I        IP   G    +  L + G  ++      L  L  L  L L  
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 196 NQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG------T 249
           N ++       +    L+ L L++N+L   +P   AD K ++++ L  N +S        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 250 VPESLVQLPSLEILFIWNN 268
            P    +  S   + +++N
Sbjct: 264 PPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 6e-15
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 4/214 (1%)

Query: 330 SSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
                L L++N  +      F  L +++ + L  N  +   P       KLE   +S N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN- 89

Query: 390 KLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNC 449
           +L  +      +L  L+        +  ++    +   +  + ++    SG    +    
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 450 VELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFND 509
            +L  I +A+  +  +IP+ L   P L  L L  N ++    A     ++L  L +SFN 
Sbjct: 150 KKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 510 ISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCH 543
           IS                +  N KL   P     
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
               L +L+L  N  +      +  L +L  L +S N+ S    G + +  +L  L   +
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH-LN 227

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQF------GSFKSLEFLHLAGNLLN 127
           N+    VP  ++  ++++V+ L  +  S    + F          S   + L  N + 
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 4e-06
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 441 TIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSL 500
            +P+ +    +   +DL NNK+          L  L  L L +N +S   P  F     L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 501 TVLNVSFNDISGSIPSG 517
             L +S N +   +P  
Sbjct: 82  ERLYLSKNQLK-ELPEK 97

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.9 bits (240), Expect = 1e-22
 Identities = 58/265 (21%), Positives = 95/265 (35%), Gaps = 36/265 (13%)

Query: 629 LPTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCY-NRHQAYLLYDY 684
             T  TV+VK ++ GAT      ++SE    I    H N++ LLG C        ++ ++
Sbjct: 40  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 99

Query: 685 LPNGNLSEKIRTKR------------------DWAAKYKIVLGVARGLCFLHHDCYPAIP 726
              GNLS  +R+KR                             VA+G+ FL         
Sbjct: 100 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCI 156

Query: 727 HGDLKASNIVFDENMEPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMKEEMY--- 782
           H DL A NI+  E     + +FG  + + +  D                  + + +Y   
Sbjct: 157 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQ 216

Query: 783 MDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV 842
            DV+ FG ++ EI + G     G  +     +     +     + +      E+      
Sbjct: 217 SDVWSFGVLLWEIFSLGASPYPGVKID----EEFCRRLKEGTRMRAPDYTTPEMY---QT 269

Query: 843 ALLCTRSTPSDRPSMEEALKLLSGL 867
            L C    PS RP+  E ++ L  L
Sbjct: 270 MLDCWHGEPSQRPTFSELVEHLGNL 294

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 2e-22
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 33/249 (13%)

Query: 631 TGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCY----NRHQAYLLYD 683
           T + V+  +++           F         ++H N++R           +    L+ +
Sbjct: 33  TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE 92

Query: 684 YLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI-VFDEN 740
            + +G L   ++  +             + +GL FLH    P I H DLK  NI +    
Sbjct: 93  LMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPP-IIHRDLKCDNIFITGPT 151

Query: 741 MEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM-------DVYGFGEIIL 793
               + + G   L  L   SF   +  T        M  EMY        DVY FG  +L
Sbjct: 152 GSVKIGDLG---LATLKRASFAKAVIGT-----PEFMAPEMYEEKYDESVDVYAFGMCML 203

Query: 794 EILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSD 853
           E+ T      +      +    +   +   +    +     E+K   ++   C R    +
Sbjct: 204 EMAT-SEYPYSECQNAAQIYRRVTSGVKPASFDKVAI---PEVK---EIIEGCIRQNKDE 256

Query: 854 RPSMEEALK 862
           R S+++ L 
Sbjct: 257 RYSIKDLLN 265

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 94.8 bits (235), Expect = 5e-22
 Identities = 53/254 (20%), Positives = 88/254 (34%), Gaps = 29/254 (11%)

Query: 629 LPTGITVSVKKIEWGATRI-------KIVSEFITRIGTVR----HKNLIRLLGFCYNRHQ 677
            PT    +VK I+             ++    +  +  +R    H N+I+L         
Sbjct: 25  KPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTF 84

Query: 678 AYLLYDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
            +L++D +  G L + +  K         KI+  +   +C LH      I H DLK  NI
Sbjct: 85  FFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENI 141

Query: 736 VFDENMEPHLAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGF 788
           + D++M   L +FGF       + L ++            E     N       +D++  
Sbjct: 142 LLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWST 201

Query: 789 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTR 848
           G I+  +L  G                +L  + + N    S    D    V D+      
Sbjct: 202 GVIMYTLLA-GSPPFWHRKQML-----MLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLV 255

Query: 849 STPSDRPSMEEALK 862
             P  R + EEAL 
Sbjct: 256 VQPQKRYTAEEALA 269

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 7e-22
 Identities = 42/239 (17%), Positives = 94/239 (39%), Gaps = 16/239 (6%)

Query: 629 LPTGITVSVKKIEWG-ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN 687
           + TG  V+++++      + +++   I  +   ++ N++  L       + +++ +YL  
Sbjct: 42  VATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAG 101

Query: 688 GNLSEKI-RTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLA 746
           G+L++ +  T  D      +     + L FLH +    + H D+K+ NI+   +    L 
Sbjct: 102 GSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLT 158

Query: 747 EFGF--KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
           +FGF  +   + +  S      +  + E          +D++  G + +E++  G     
Sbjct: 159 DFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE-GEPPYL 217

Query: 805 GSSLQNKPIDGLLGEMYNEN-EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
             +    P+  L     N   E+ +   L    +   D    C       R S +E L+
Sbjct: 218 NEN----PLRALYLIATNGTPELQNPEKLSAIFR---DFLNRCLDMDVEKRGSAKELLQ 269

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 95.9 bits (238), Expect = 7e-22
 Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 22/244 (9%)

Query: 629 LPTGITVSVKKI--EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP 686
             TG     K I   +   +  + +E I+ +  + H  LI L     ++++  L+ ++L 
Sbjct: 51  KATGRVFVAKFINTPYPLDKYTVKNE-ISIMNQLHHPKLINLHDAFEDKYEMVLILEFLS 109

Query: 687 NGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
            G L ++I  +      A     +     GL  +H     +I H D+K  NI+ +     
Sbjct: 110 GGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKAS 166

Query: 744 HLAEFGFKYLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEIILEILTNGR 800
            +    F   T+L           T    + E  +      Y D++  G +   +L+ G 
Sbjct: 167 SVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLS-GL 225

Query: 801 LTNAGSSLQN--KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
              AG       + +     E   +     S   +D IK +L          P  R ++ 
Sbjct: 226 SPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQK-------EPRKRLTVH 278

Query: 859 EALK 862
           +AL+
Sbjct: 279 DALE 282

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (226), Expect = 9e-21
 Identities = 46/252 (18%), Positives = 81/252 (32%), Gaps = 24/252 (9%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDY 684
           L T    ++K +E      +    ++TR    +  + H   ++L     +  + Y    Y
Sbjct: 30  LATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSY 89

Query: 685 LPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
             NG L + IR     D          +   L +LH      I H DLK  NI+ +E+M 
Sbjct: 90  AKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMH 146

Query: 743 PHLAEFGFKYLTQLADGSFPAKIAWTESG----EFYNAMKEEMYMDVYGFGEIILEILTN 798
             + +FG   +         A      +     E           D++  G II +++  
Sbjct: 147 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA- 205

Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSME 858
           G       +        L+ +   + E         + +   D+         + R   E
Sbjct: 206 GLPPFRAGNEY------LIFQKIIKLEYDFPEKFFPKAR---DLVEKLLVLDATKRLGCE 256

Query: 859 EALKLLSGLKPH 870
           E       LK H
Sbjct: 257 EMEG-YGPLKAH 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (221), Expect = 3e-20
 Identities = 58/265 (21%), Positives = 96/265 (36%), Gaps = 7/265 (2%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
           +VP  I      + + L G+  S    + F + ++L  L L  N+L     A    L  +
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 141 THMEIGYNFYQGNI-PWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLA 199
             +++  N    ++ P     +  +  L +    L    P     L  L+ L+L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 200 GQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPS 259
                 F  +  L  L L  NR+S     +F  L +L  L L  N ++   P +   L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 260 LEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFT 319
           L  L+++ N  S    E L     L+++ ++ N +             L K    S+   
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW-AWLQKFRGSSSEVP 261

Query: 320 GSLSPSLSNCSSLVRLRLEDNSFSG 344
            SL   L+        RL  N   G
Sbjct: 262 CSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 1e-16
 Identities = 59/280 (21%), Positives = 104/280 (37%), Gaps = 8/280 (2%)

Query: 18  NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS 77
              V  +          PV I    +   + +  N  S       ++ RNL +L   SN 
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 78  FSGSVPAEISQLEHLKVLNLAGSYFSGPI-PSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
            +    A  + L  L+ L+L+ +     + P+ F     L  LHL    L +  P     
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L  + ++ +  N  Q        ++  + +L + G  +S    +    L  L+ L L +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
           ++A   P  F  +  L +L L  N LS    E+ A L+ L+ L L  N        +   
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPL 246

Query: 257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG 296
              L+     ++    SLP+ L   +      ++ N+  G
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 3e-16
 Identities = 46/304 (15%), Positives = 83/304 (27%), Gaps = 53/304 (17%)

Query: 210 TTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNY 269
              + + L  NR+S     SF   +NL +L L  N ++     +   L  LE L + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 270 FSGSL-PENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSN 328
              S+ P       +L  + +         P        L  L L  N        +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 329 CSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNN 388
             +L  L L  N  S      F  L  ++ + L +N      P       +L    +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 389 PKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSN 448
                   A                                                 + 
Sbjct: 212 NLSALPTEAL------------------------------------------------AP 223

Query: 449 CVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFN 508
              L+ + L +N  +            L     S + +   +P +    +   +  ++ N
Sbjct: 224 LRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAAN 279

Query: 509 DISG 512
           D+ G
Sbjct: 280 DLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 1e-15
 Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 28/267 (10%)

Query: 106 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ 165
           +P    +  + + + L GN ++    A     + +T + +  N            ++ ++
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 166 YLDIAGANLSGSI-PKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 224
            LD++      S+ P     L +L +L L R  L    P  F  +  L+ L L DN L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 225 PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKL 284
              ++F DL NL  L L  N +S     +   L SL+ L +  N  +   P       +L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 285 RWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSG 344
             + +  NN +      +                            +L  LRL DN +  
Sbjct: 204 MTLYLFANNLSALPTEALA------------------------PLRALQYLRLNDNPWVC 239

Query: 345 EIPLKFSQLPDINYIDLSRNGFTGGIP 371
           +   +      +     S +     +P
Sbjct: 240 DCRAR-PLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 2e-10
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 6/246 (2%)

Query: 273 SLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSL 332
           ++P  +      + + +  N  +        +   L  L L SN      + + +  + L
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 333 VRLRLEDNSFSGEI-PLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKL 391
            +L L DN+    + P  F  L  ++ + L R G     P      + L+Y  + +N  L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-AL 141

Query: 392 GGMIPAQTWSLPSLQNFSASACNITGNLPP-FKSCKSISVIESHMNNLSGTIPESVSNCV 450
             +       L +L +       I+      F+   S+  +  H N ++   P +  +  
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 451 ELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDI 510
            L  + L  N L     E LA L  L  L L+ N       A+    + L     S +++
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEV 260

Query: 511 SGSIPS 516
             S+P 
Sbjct: 261 PCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 39/241 (16%), Positives = 72/241 (29%), Gaps = 5/241 (2%)

Query: 303 CSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLS 362
           C                 ++   +   ++  R+ L  N  S      F    ++  + L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 363 RNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG-NLPP 421
            N             + LE  ++S+N +L  + PA    L  L       C +       
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 422 FKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDL 481
           F+   ++  +    N L     ++  +   L  + L  N++          L  L  L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 482 SHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAY-AGNPKLCGAPLQ 540
             N ++   P  F     L  L +  N++S                    NP +C    +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 541 P 541
           P
Sbjct: 245 P 245

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 4/161 (2%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
               L  L L  N+          +L +L  L +  N  S       + L +L  L    
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           N  +   P     L  L  L L  +  S          ++L++L L  N       A   
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RP 245

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG 176
           +   +       +    ++P +L          +A  +L G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.0 bits (220), Expect = 2e-19
 Identities = 33/249 (13%), Positives = 80/249 (32%), Gaps = 25/249 (10%)

Query: 629 LPTGITVSVKKI-------EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL 681
             TG   ++K +       + G T        ++ + T     ++ +    +   +   +
Sbjct: 26  ADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFI 85

Query: 682 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
            D +  G+L   +        A        +  GL  +H+     + + DLK +NI+ DE
Sbjct: 86  LDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDE 142

Query: 740 NMEPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTN 798
           +    +++ G     ++    +      +         +  +   D +  G ++ ++L  
Sbjct: 143 HGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 202

Query: 799 GRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM- 857
                   +     ID +   M  E     S  L+  ++ +L           + R    
Sbjct: 203 HSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQR-------DVNRRLGCL 255

Query: 858 ----EEALK 862
               +E  +
Sbjct: 256 GRGAQEVKE 264

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 85.7 bits (211), Expect = 8e-19
 Identities = 46/266 (17%), Positives = 96/266 (36%), Gaps = 32/266 (12%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLL 681
            KA    G T ++KKI        I S  I  I     ++H N+++L    + + +  L+
Sbjct: 19  YKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLV 78

Query: 682 YDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           +++L           +   +       +L +  G+ + H      + H DLK  N++ + 
Sbjct: 79  FEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINR 135

Query: 740 NMEPHLAEFGFKYLTQLADGSFPAKIAWT---ESGEFYNAMKEEMYMDVYGFGEIILEIL 796
             E  +A+FG      +    +  +I             + K    +D++  G I  E++
Sbjct: 136 EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV 195

Query: 797 TNGRLTNAGSSLQN--KPIDGLLGEMYNENEVGSSSSLQDEIKL---------------- 838
             G     G S  +    I  +LG   ++N    +   + +                   
Sbjct: 196 N-GTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLD 254

Query: 839 --VLDVALLCTRSTPSDRPSMEEALK 862
              +D+     +  P+ R + ++AL+
Sbjct: 255 ESGIDLLSKMLKLDPNQRITAKQALE 280

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (210), Expect = 2e-18
 Identities = 44/243 (18%), Positives = 81/243 (33%), Gaps = 22/243 (9%)

Query: 629 LPTGITVSVKKIEWGATRIK-----IVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD 683
             T    ++K ++     +       + E         H  L  +      +   + + +
Sbjct: 24  KKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVME 83

Query: 684 YLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM 741
           YL  G+L   I++    D +        +  GL FLH      I + DLK  NI+ D++ 
Sbjct: 84  YLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDG 140

Query: 742 EPHLAEFGFKYLTQLADGSFPAKI--AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
              +A+FG      L D             + E     K    +D + FG ++ E+L  G
Sbjct: 141 HIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI-G 199

Query: 800 RLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEE 859
           +    G   +       L      +       L+ E K   D+ +      P  R  +  
Sbjct: 200 QSPFHGQDEEE------LFHSIRMDNPFYPRWLEKEAK---DLLVKLFVREPEKRLGVRG 250

Query: 860 ALK 862
            ++
Sbjct: 251 DIR 253

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 2e-18
 Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 27/260 (10%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
             T   V++K++        + S  +  I     ++HKN++RL    ++  +  L++++ 
Sbjct: 24  RETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFC 83

Query: 686 PNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHL 745
                        D   +  +   + + L  L       + H DLK  N++ + N E  L
Sbjct: 84  DQDLKKYFDSCNGDLDPE-IVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKL 142

Query: 746 AEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGRLT 802
           A FG      +    + A++              ++Y   +D++  G I  E+   GR  
Sbjct: 143 ANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL 202

Query: 803 NAGSSLQN----------KPIDGLLGEMYNENEVGSSSSLQDEIKLV----------LDV 842
             G+ + +           P +     M    +            LV           D+
Sbjct: 203 FPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDL 262

Query: 843 ALLCTRSTPSDRPSMEEALK 862
                +  P  R S EEAL+
Sbjct: 263 LQNLLKCNPVQRISAEEALQ 282

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 3e-18
 Identities = 48/249 (19%), Positives = 97/249 (38%), Gaps = 25/249 (10%)

Query: 629 LPTGITVSVKKI--------EWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL 680
             TG+  + K I          G +R  I  E ++ +  ++H N+I L     N+    L
Sbjct: 32  KSTGLQYAAKFIKKRRTKSSRRGVSREDIERE-VSILKEIQHPNVITLHEVYENKTDVIL 90

Query: 681 LYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           + + +  G L + +  K     +      + + L  +++     I H DLK  NI+  + 
Sbjct: 91  ILELVAGGELFDFLAEKESLTEEEATEF-LKQILNGVYYLHSLQIAHFDLKPENIMLLDR 149

Query: 741 --MEPHLAEFGFKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEI 795
              +P +    F    ++  G+    I  T    + E  N     +  D++  G I   +
Sbjct: 150 NVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL 209

Query: 796 LTNGRLTNAGSSLQN--KPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSD 853
           L+ G     G + Q     +  +  E  +E    +S+  +D I+ +L          P  
Sbjct: 210 LS-GASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK-------DPKK 261

Query: 854 RPSMEEALK 862
           R +++++L+
Sbjct: 262 RMTIQDSLQ 270

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 4e-18
 Identities = 35/247 (14%), Positives = 86/247 (34%), Gaps = 22/247 (8%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQA----YLLYDY 684
             T    ++K ++      K   E        +  +++R++    N +       ++ + 
Sbjct: 34  KRTQEKFALKMLQ---DCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMEC 90

Query: 685 LPNGNLSEKIRTKR----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN 740
           L  G L  +I+ +           +I+  +   + +LH      I H D+K  N+++   
Sbjct: 91  LDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSK 147

Query: 741 MEPHLAEFG-FKYLTQLADGSFPAKIAWTE---SGEFYNAMKEEMYMDVYGFGEIILEIL 796
               + +   F +  +    +      +T    + E     K +   D++  G I+  +L
Sbjct: 148 RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILL 207

Query: 797 TNGRLTNAGSSLQNKP-IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRP 855
                  +   L   P +   +     E      S + +E+K    +     ++ P+ R 
Sbjct: 208 CGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVK---MLIRNLLKTEPTQRM 264

Query: 856 SMEEALK 862
           ++ E + 
Sbjct: 265 TITEFMN 271

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.1 bits (202), Expect = 2e-17
 Identities = 43/238 (18%), Positives = 85/238 (35%), Gaps = 11/238 (4%)

Query: 629 LPTGITVSVKKIE-WGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDY 684
              G   ++K ++     R+K V            V H  +IR+ G   +  Q +++ DY
Sbjct: 26  RHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDY 85

Query: 685 LPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
           +  G L   +R  + +          A     L +     I + DLK  NI+ D+N    
Sbjct: 86  IEGGELFSLLRKSQRFPNPVAKFY-AAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIK 144

Query: 745 LAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNA 804
           + +FGF         +      +  + E  +       +D + FG +I E+L  G     
Sbjct: 145 ITDFGFAKYVPDVTYTLCGTPDYI-APEVVSTKPYNKSIDWWSFGILIYEMLA-GYTPFY 202

Query: 805 GSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
            S+        L  E+        +  ++D +  ++   L  ++   + +   E+   
Sbjct: 203 DSNTMKTYEKILNAELRFPPFF--NEDVKDLLSRLITRDL--SQRLGNLQNGTEDVKN 256

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.0 bits (202), Expect = 2e-17
 Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 17/242 (7%)

Query: 629 LPTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
             T   V++K I   A       + +E I  +  ++H N++ L     +    YL+   +
Sbjct: 31  KRTQKLVAIKCIAKKALEGKEGSMENE-IAVLHKIKHPNIVALDDIYESGGHLYLIMQLV 89

Query: 686 PNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
             G L ++I  K         +++  V   + +LH                   DE+ + 
Sbjct: 90  SGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKI 149

Query: 744 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY---MDVYGFGEIILEILTNGR 800
            +++FG         GS  +    T        + ++ Y   +D +  G I   +L  G 
Sbjct: 150 MISDFGL--SKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLC-GY 206

Query: 801 LTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEA 860
                 +        L  ++        S    D      D         P  R + E+A
Sbjct: 207 PPFYDENDAK-----LFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQA 261

Query: 861 LK 862
           L+
Sbjct: 262 LQ 263

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 78.2 bits (192), Expect = 2e-16
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 24/249 (9%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQA----YL 680
           L     V+VK +     R         R       + H  ++ +         A    Y+
Sbjct: 29  LRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYI 88

Query: 681 LYDYLPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD 738
           + +Y+    L + + T+         +++    + L F H +    I H D+K +NI+  
Sbjct: 89  VMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMIS 145

Query: 739 ENMEPHLAEFGF-----KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIIL 793
                 + +FG           +   +     A   S E       +   DVY  G ++ 
Sbjct: 146 ATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLY 205

Query: 794 EILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSD 853
           E+LT G     G S  +     +  +   E+ +  S+  +     +  V L      P +
Sbjct: 206 EVLT-GEPPFTGDSPVS-----VAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPEN 259

Query: 854 RPSMEEALK 862
           R      ++
Sbjct: 260 RYQTAAEMR 268

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 3e-16
 Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 44/276 (15%)

Query: 625 CKAV-LPTGITVSVKKI---EWGATRIKIVSEFITRIGTVRHKNLIRLLGFC----YNRH 676
           C A      + V++KKI   E      + + E I  +   RH+N+I +          + 
Sbjct: 25  CSAYDNVNKVRVAIKKISPFEHQTYCQRTLRE-IKILLRFRHENIIGINDIIRAPTIEQM 83

Query: 677 QAYLLYDYLPNGNLSEKIRTKR-DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
           +   L  +L   +L + ++T+          +  + RGL ++H      + H DLK SN+
Sbjct: 84  KDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNL 140

Query: 736 VFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM--------DVYG 787
           + +   +  + +FG                        +    E M          D++ 
Sbjct: 141 LLNTTCDLKICDFGLA--RVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 198

Query: 788 FGEIILEILTNGRLTNAGS---------------------SLQNKPIDGLLGEMYNENEV 826
            G I+ E+L+N  +                           + N      L  + ++N+V
Sbjct: 199 VGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKV 258

Query: 827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
             +    +     LD+        P  R  +E+AL 
Sbjct: 259 PWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 294

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 4e-16
 Identities = 52/261 (19%), Positives = 92/261 (35%), Gaps = 32/261 (12%)

Query: 631 TGITVSVKKIEWG---ATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDY 684
           T   V++KKI+ G     +  I    +  I     + H N+I LL    ++    L++D+
Sbjct: 22  TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF 81

Query: 685 LPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
           +                 +     +L   +GL +LH      I H DLK +N++ DEN  
Sbjct: 82  METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGV 138

Query: 743 PHLAEFGF--KYLTQLADGSFPAKIAWTESGEFYNAMKEEMY-MDVYGFGEIILEILTNG 799
             LA+FG    + +     +      W  + E     +     +D++  G I+ E+L   
Sbjct: 139 LKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV 198

Query: 800 RLTNAGSSLQ---------NKPIDGLLGEMYNENEVGSSSSLQDEI---------KLVLD 841
                 S L            P +    +M +  +  +  S                +LD
Sbjct: 199 PFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLD 258

Query: 842 VALLCTRSTPSDRPSMEEALK 862
           +        P  R +  +ALK
Sbjct: 259 LIQGLFLFNPCARITATQALK 279

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 1e-15
 Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 35/270 (12%)

Query: 625 CKAVLPTGITVSVKKIEWGATRIKIVSEFIT------RIGTVRHKNLIRLLGFCYNRHQA 678
            + +   G  V++K++        +    I        + T  H N++RL   C      
Sbjct: 26  ARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD 85

Query: 679 -----YLLYDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL 730
                 L+++++     +   +             ++  + RGL FLH      + H DL
Sbjct: 86  RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDL 142

Query: 731 KASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI-AWTESGEFYNAMKEEMYMDVYGFG 789
           K  NI+   + +  LA+FG   +           +  W  + E          +D++  G
Sbjct: 143 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 202

Query: 790 EIILEILTNGRLTNAGSSLQ-----------------NKPIDGLLGEMYNENEVGSSSSL 832
            I  E+     L    S +                   + +       ++++       +
Sbjct: 203 CIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFV 262

Query: 833 QDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
            D  +L  D+ L C    P+ R S   AL 
Sbjct: 263 TDIDELGKDLLLKCLTFNPAKRISAYSALS 292

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.1 bits (181), Expect = 6e-15
 Identities = 27/252 (10%), Positives = 64/252 (25%), Gaps = 23/252 (9%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
           +  G  V++K         ++  E       ++    I  + +C       ++   L   
Sbjct: 29  IAAGEEVAIKLECVKTKHPQLHIE-SKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGP 87

Query: 689 NLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF-DENMEPH 744
           +L +                +   +   + ++H        H D+K  N +         
Sbjct: 88  SLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNL 144

Query: 745 LAEFGFKYLTQLADGSFPAKIAWTESG-----------EFYNAMKEEMYMDVYGFGEIIL 793
           +    F    +  D      I + E+              +  +++    D+   G +++
Sbjct: 145 VYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLM 204

Query: 794 EILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCTRSTPS 852
                G L      L+          +  +        L              C      
Sbjct: 205 YFNL-GSLPW--QGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFD 261

Query: 853 DRPSMEEALKLL 864
           D+P      +L 
Sbjct: 262 DKPDYSYLRQLF 273

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 1e-14
 Identities = 47/277 (16%), Positives = 96/277 (34%), Gaps = 47/277 (16%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCY--------NRHQ 677
             TG  V++KK+     +       +  I     ++H+N++ L+  C          +  
Sbjct: 32  RKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGS 91

Query: 678 AYLLYDYLPNGNLSE--KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNI 735
            YL++D+  +        +  K   +   +++  +  GL ++H +    I H D+KA+N+
Sbjct: 92  IYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANV 148

Query: 736 VFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMY--------MDVYG 787
           +   +    LA+FG      LA  S P           +    E +         +D++G
Sbjct: 149 LITRDGVLKLADFGLARAFSLAKNSQP-NRYTNRVVTLWYRPPELLLGERDYGPPIDLWG 207

Query: 788 FGEIILEILTNGRLTNAGSSLQ--NKPIDGLLGEMYNENEVGSSSSLQDEIKLV------ 839
            G I+ E+ T   +    +                        +  L ++++LV      
Sbjct: 208 AGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRK 267

Query: 840 --------------LDVALLCTRSTPSDRPSMEEALK 862
                         LD+        P+ R   ++AL 
Sbjct: 268 VKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 304

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 1e-14
 Identities = 47/271 (17%), Positives = 89/271 (32%), Gaps = 47/271 (17%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQA------ 678
             +G  V++KK+            F  R    +  + H N++RL  F Y+  +       
Sbjct: 42  CDSGELVAIKKV-------LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 94

Query: 679 YLLYDYLPNGNLSEKIRTKR-----DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKAS 733
            L+ DY+P           R             +  + R L ++H      I H D+K  
Sbjct: 95  NLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQ 151

Query: 734 NIVFDENMEPH-LAEFGF--KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGE 790
           N++ D +     L +FG   + +    + S+     +      + A      +DV+  G 
Sbjct: 152 NLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGC 211

Query: 791 IILEILTNGRLTNAGSSL-QNKPIDGLLGEMYNENEVGSSSSLQDEI------------- 836
           ++ E+L    +    S + Q   I  +LG    E     + +  +               
Sbjct: 212 VLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVF 271

Query: 837 -----KLVLDVALLCTRSTPSDRPSMEEALK 862
                   + +       TP+ R +  EA  
Sbjct: 272 RPRTPPEAIALCSRLLEYTPTARLTPLEACA 302

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 3e-14
 Identities = 47/262 (17%), Positives = 86/262 (32%), Gaps = 31/262 (11%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDYL 685
             TG  V++KKI        + S  I  I     + H N+++LL   +  ++ YL++++L
Sbjct: 24  KLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFL 83

Query: 686 PNGNLS---EKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
                        T          +  + +GL F H      + H DLK  N++ +    
Sbjct: 84  HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGA 140

Query: 743 PHLAEFGF--KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM-DVYGFGEIILEILTNG 799
             LA+FG    +   +   +      W  + E     K      D++  G I  E++T  
Sbjct: 141 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

Query: 800 RLTNAGSSLQ---------NKPIDGLLGEMYNENEVGSSSSLQDEIKL----------VL 840
            L    S +            P + +   + +  +   S                     
Sbjct: 201 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGR 260

Query: 841 DVALLCTRSTPSDRPSMEEALK 862
            +        P+ R S + AL 
Sbjct: 261 SLLSQMLHYDPNKRISAKAALA 282

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 4e-14
 Identities = 47/269 (17%), Positives = 86/269 (31%), Gaps = 34/269 (12%)

Query: 625 CKAV-LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQA-- 678
           C AV   TG  V++KK+                +     +RH+N+I LL           
Sbjct: 35  CSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD 94

Query: 679 ----YLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASN 734
               YL+  ++           K        +V  + +GL ++H        H DLK  N
Sbjct: 95  FTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGII---HRDLKPGN 151

Query: 735 IVFDENMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILE 794
           +  +E+ E  + +FG           +     +       N M+    +D++  G I+ E
Sbjct: 152 LAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAE 211

Query: 795 ILTNGRLTNAGS---------------------SLQNKPIDGLLGEMYNENEVGSSSSLQ 833
           ++T   L                           LQ+      +  +    +   +S L 
Sbjct: 212 MITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILT 271

Query: 834 DEIKLVLDVALLCTRSTPSDRPSMEEALK 862
           +   L +++           R +  EAL 
Sbjct: 272 NASPLAVNLLEKMLVLDAEQRVTAGEALA 300

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 7e-14
 Identities = 47/265 (17%), Positives = 93/265 (35%), Gaps = 35/265 (13%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQA-----YL 680
             TG+ V+VKK+      I         +     ++H+N+I LL                
Sbjct: 40  TKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 99

Query: 681 LYDYLPNGNLSEKIRTKR-DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           L  +L   +L+  ++ ++        ++  + RGL ++H        H DLK SN+  +E
Sbjct: 100 LVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADI---IHRDLKPSNLAVNE 156

Query: 740 NMEPHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNG 799
           + E  + +FG    T      + A   +       N M     +D++  G I+ E+LT G
Sbjct: 157 DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLT-G 215

Query: 800 RLTNAGSS----------------------LQNKPIDGLLGEMYNENEVGSSSSLQDEIK 837
           R    G+                       + ++     +  +    ++  ++       
Sbjct: 216 RTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANP 275

Query: 838 LVLDVALLCTRSTPSDRPSMEEALK 862
           L +D+           R +  +AL 
Sbjct: 276 LAVDLLEKMLVLDSDKRITAAQALA 300

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 1e-13
 Identities = 36/248 (14%), Positives = 71/248 (28%), Gaps = 33/248 (13%)

Query: 629 LPTGITVSVKKIE----WGATRIKIVSEFITRIGTVR-----HKNLIRLLGFCYNRHQAY 679
           +   + V++K +E         +   +     +  ++        +IRLL +        
Sbjct: 26  VSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFV 85

Query: 680 LLYDYLPNGNLSEKIRTKR---DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIV 736
           L+ +            T+R              V   +   H+     + H D+K  NI+
Sbjct: 86  LILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENIL 142

Query: 737 FDEN-MEPHLAEFGF-KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILE 794
            D N  E  L +FG    L       F     ++                V+  G ++ +
Sbjct: 143 IDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYD 202

Query: 795 ILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDR 854
           ++           +    +                  +  E +    +   C    PSDR
Sbjct: 203 MVCGDIPFEHDEEIIRGQVF-------------FRQRVSSECQ---HLIRWCLALRPSDR 246

Query: 855 PSMEEALK 862
           P+ EE   
Sbjct: 247 PTFEEIQN 254

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 42/289 (14%), Positives = 106/289 (36%), Gaps = 26/289 (8%)

Query: 165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSG 224
           Q LD+ G NL   +   L +   + +    R+ +   +   FS    ++ +DLS++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEV 60

Query: 225 -PIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIW--NNYFSGSLPENLGRN 281
             +    +    L+ LSL    +S  +  +L +  +L  L +   + +   +L   L   
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 282 SKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNS 341
           S+L  +++S           +            ++        +LS            N 
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVA----------VAHVSETITQLNLSGY--------RKNL 162

Query: 342 FSGEIPLKFSQLPDINYIDLSRN-GFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTW 400
              ++     + P++ ++DLS +         +  Q + L++ ++S    +      +  
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222

Query: 401 SLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNC 449
            +P+L+          G L   K  +++  ++ + ++ +     ++ N 
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 45/268 (16%), Positives = 93/268 (34%), Gaps = 16/268 (5%)

Query: 46  SLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSG- 104
           +LD++  N      G + S + ++      +     +    S    ++ ++L+ S     
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVS 61

Query: 105 PIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQ------- 157
            +         L+ L L G  L+D I   L     +  + +           Q       
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 158 -LGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLD 216
            L  ++     D    ++  ++      +T+L      +N     +     R   L  LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 217 LSDNRL-SGPIPESFADLKNLRLLSLMY-NEMSGTVPESLVQLPSLEILFIWNNYFSGSL 274
           LSD+ +      + F  L  L+ LSL    ++       L ++P+L+ L ++     G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 275 PENLGRNSKLRWVDVSTNNFNGSIPPDI 302
                    L  + ++ ++F     P I
Sbjct: 242 QLLK---EALPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 40/316 (12%), Positives = 96/316 (30%), Gaps = 44/316 (13%)

Query: 190 SLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG- 248
           +L L    L   V         + +     + +  P+ E F+  + ++ + L  + +   
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 249 TVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVL 308
           T+   L Q   L+ L +     S  +   L +NS L  +++S  +               
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-------------- 107

Query: 309 FKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG 368
                F+     S    L   +        +      +      +  +N     +N    
Sbjct: 108 --FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 165

Query: 369 GIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSI 428
            + T + +   L + ++S++  L      + + L  LQ+ S S C               
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-------------- 211

Query: 429 SVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSG 488
                   ++       +     L+ + +      G++  +   LP    L ++ +  + 
Sbjct: 212 --------DIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTT 260

Query: 489 QIPAKFGSCSSLTVLN 504
                 G+  +  +  
Sbjct: 261 IARPTIGNKKNQEIWG 276

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 5e-09
 Identities = 34/250 (13%), Positives = 71/250 (28%), Gaps = 18/250 (7%)

Query: 287 VDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGE- 345
           +D++  N +  +   + S GV+        +F         +   +  + L ++      
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRC--PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 346 IPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSL 405
           +    SQ   +  + L     +  I   + + S L   N+S              S  S 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 406 QNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERI---------D 456
            +    +          +   +         NLSG       + +               
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 457 LANNKLIGSIPEVLARLPVLGVLDLSH-NSLSGQIPAKFGSCSSLTVLNVSFNDISGSIP 515
             +  L     +   +L  L  L LS    +  +   + G   +L  L      + G +P
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL-----QVFGIVP 237

Query: 516 SGKVLRLMGS 525
            G +  L  +
Sbjct: 238 DGTLQLLKEA 247

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 9e-09
 Identities = 35/251 (13%), Positives = 84/251 (33%), Gaps = 16/251 (6%)

Query: 4   LSGALPGKPLRIFFN--ELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSGHFPG 60
              +   +PL   F+   +  ++LS++         I    + L +L +     S     
Sbjct: 30  CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 89

Query: 61  GIQSLRNLLVLDAF--SNSFSGSVPAEISQLEHLKVLNLAGSYFSG------PIPSQFGS 112
            +    NL+ L+    S     ++   +S    L  LNL+  +          +     +
Sbjct: 90  TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 149

Query: 113 FKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGN-IPWQLGNMSEVQYLDIAG 171
              L       NL    +   +     + H+++  +    N    +   ++ +Q+L ++ 
Sbjct: 150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 209

Query: 172 AN-LSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESF 230
              +      EL  +  L++L +F     G +         L  L ++ +  +     + 
Sbjct: 210 CYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA---LPHLQINCSHFTTIARPTI 266

Query: 231 ADLKNLRLLSL 241
            + KN  +  +
Sbjct: 267 GNKKNQEIWGI 277

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 68.7 bits (167), Expect = 5e-13
 Identities = 43/273 (15%), Positives = 86/273 (31%), Gaps = 50/273 (18%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR--HQAYLLYDYLP 686
           +     V VK ++    + KI  E           N+I L     +       L+++++ 
Sbjct: 57  ITNNEKVVVKILK-PVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVN 115

Query: 687 NGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHL 745
           N +  +  +T  D+  +   +  + + L + H      I H D+K  N++ D E+ +  L
Sbjct: 116 NTDFKQLYQTLTDYDIR-FYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRL 171

Query: 746 AEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM--------DVYGFGEIILEILT 797
            ++G      LA+   P +         Y    E +          D++  G ++  ++ 
Sbjct: 172 IDWG------LAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF 225

Query: 798 NGRLTNAGSS--LQNKPIDGLLGEMYNENEVGSSSSLQDEI------------------- 836
                  G     Q   I  +LG     + +   +   D                     
Sbjct: 226 RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHS 285

Query: 837 -------KLVLDVALLCTRSTPSDRPSMEEALK 862
                     LD      R     R +  EA++
Sbjct: 286 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 318

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.9 bits (165), Expect = 1e-12
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 15/240 (6%)

Query: 629 LPTGITVSVKKIE-WGATRIKIVSEFITRI---GTVRHKNLIRLLGFCYNRHQAYLLYDY 684
             +G   ++K ++     ++K +   +        V    L++L     +    Y++ +Y
Sbjct: 63  KESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEY 122

Query: 685 LPNGNLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME 742
           +  G +   +R                +     +LH      + + DLK  N++ D+   
Sbjct: 123 VAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGY 179

Query: 743 PHLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLT 802
             + +FGF    +    +           E   +      +D +  G +I E+   G   
Sbjct: 180 IQVTDFGFAKRVKGRTWTLCGTPEALAP-EIILSKGYNKAVDWWALGVLIYEMAA-GYPP 237

Query: 803 NAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALK 862
                        + G++   +    SS L+D ++ +L V L  T+   + +  + +   
Sbjct: 238 FFADQPIQIYEKIVSGKVRFPSHF--SSDLKDLLRNLLQVDL--TKRFGNLKNGVNDIKN 293

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 1e-12
 Identities = 42/253 (16%), Positives = 80/253 (31%), Gaps = 31/253 (12%)

Query: 630 PTGITVSVKKI--EWGATRIKIVSEFITRIGTVR----HKNLIRLLGFCYNRHQAYLLYD 683
            TG   ++K +       + K      T    +        L+ L        + +L+ D
Sbjct: 50  DTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILD 109

Query: 684 YLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP 743
           Y+  G L   +  +R+   ++++ + V   +  L H     I + D+K  NI+ D N   
Sbjct: 110 YINGGELFTHLS-QRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHV 168

Query: 744 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYM---------DVYGFGEIILE 794
            L +FG          +   + A+   G       + +           D +  G ++ E
Sbjct: 169 VLTDFGLSKEFV----ADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYE 224

Query: 795 ILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDR 854
           +LT G         +N        E+            Q+   L  D+        P  R
Sbjct: 225 LLT-GASPFTVDGEKN-----SQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKR 278

Query: 855 PSM-----EEALK 862
                   +E  +
Sbjct: 279 LGCGPRDADEIKE 291

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 9/210 (4%)

Query: 181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLS 240
           E+S +     +   +  L   +P +         L LS+N L      +      L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 241 LMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
           L   E++    +    LP L  L + +N           +      V   + N   S+P 
Sbjct: 62  LDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTSLPL 117

Query: 301 DICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLED-NSFSGEIPLKFSQLPDINYI 359
               G    + +    N   +L P L   +  +       N+ +       + L +++ +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 360 DLSRNGFTGGIPTDINQASKLEYFNVSNNP 389
            L  N     IP     +  L +  +  NP
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 5e-10
 Identities = 34/205 (16%), Positives = 61/205 (29%), Gaps = 25/205 (12%)

Query: 325 SLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFN 384
            +S  +S + +  +  + +  +P       D   + LS N         +   ++L   N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 385 VSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLP---------------------PFK 423
           +         +      L +L        ++                            +
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 424 SCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSH 483
               +  +    N L    P  ++   +LE++ LANN L      +L  L  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 484 NSLSGQIPAKFGSCSSLTVLNVSFN 508
           NSL   IP  F     L    +  N
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 7e-10
 Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 7/206 (3%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
               +++N    + +   P ++        L +S N         +     L  L+   +
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL--D 63

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
               +       L  L  L+L+ +                        L +  +   L  
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-ALRG 122

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L  +  + +  N  +   P  L    +++ L +A  NL+      L+ L  L++L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRL 222
            L   +P  F     L    L  N  
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 11/210 (5%)

Query: 279 GRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLE 338
            + +    V+    N   ++PPD+        L L  N        +L   + L +L L+
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 339 DNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQ 398
               +         +     +  ++      +   +   + L+             +P  
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-----SLPLG 118

Query: 399 TWSLPSLQNFSASACNITGNLPP--FKSCKSISVIESHMNNLSGTIPESVSNCVELERID 456
                          N    LPP        +  +    NNL+      ++    L+ + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 457 LANNKLIGSIPEVLARLPVLGVLDLSHNSL 486
           L  N L  +IP+      +L    L  N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 36/183 (19%), Positives = 60/183 (32%), Gaps = 4/183 (2%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
              +   L+LS N         +   T L  L++ R   +     G      +L     S
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLS 85

Query: 76  NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELG 135
           ++   S+P     L  L VL+++ +  +            L+ L+L GN L    P  L 
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 136 MLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFR 195
               +  + +  N         L  +  +  L +   N   +IPK       L   FL  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204

Query: 196 NQL 198
           N  
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 6/189 (3%)

Query: 154 IPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLK 213
           +P  L    +   L ++   L       L   T+L  L L R +       +      + 
Sbjct: 25  LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPVL 79

Query: 214 SLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGS 273
                 +     +P     L  L +L + +N ++     +L  L  L+ L++  N     
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 274 LPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLV 333
            P  L    KL  + ++ NN        +     L  L+L  N+   ++         L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 334 RLRLEDNSF 342
              L  N +
Sbjct: 199 FAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 38/259 (14%), Positives = 69/259 (26%), Gaps = 55/259 (21%)

Query: 205 EFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILF 264
           E S+V +   ++     L+  +P      K+  +L L  N +      +L+    L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 265 IWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSP 324
           +     +      +     +      ++N   S+P    +   L  L +  N  T     
Sbjct: 62  LDRAELT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 325 SLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFN 384
           +L     L  L L+ N      P   +  P +  + L+ N  T      +N    L+   
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 385 VSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPE 444
           +  N                                                    TIP+
Sbjct: 179 LQENS-------------------------------------------------LYTIPK 189

Query: 445 SVSNCVELERIDLANNKLI 463
                  L    L  N  +
Sbjct: 190 GFFGSHLLPFAFLHGNPWL 208

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 65.6 bits (159), Expect = 5e-12
 Identities = 30/260 (11%), Positives = 64/260 (24%), Gaps = 31/260 (11%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG 688
           L     V++K     +   ++  E+ T         +  +  F        L+ D L   
Sbjct: 27  LLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPS 86

Query: 689 NLSEKIRTKR--DWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH-- 744
                    R             +   +  +H      + + D+K  N +       +  
Sbjct: 87  LEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNAN 143

Query: 745 ---LAEFGFKYLTQLADGSFPAKIAWTESGEF-----YNAMKEEMYM--------DVYGF 788
              + +FG   +    D      I + E         Y ++    ++        D+   
Sbjct: 144 MIYVVDFG--MVKFYRDPVTKQHIPYREKKNLSGTARYMSI--NTHLGREQSRRDDLEAL 199

Query: 789 GEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI-KLVLDVALLCT 847
           G + +  L  G L   G              +  + +      L     +          
Sbjct: 200 GHVFMYFLR-GSLPWQGLKAAT--NKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYAR 256

Query: 848 RSTPSDRPSMEEALKLLSGL 867
                  P  +    L S +
Sbjct: 257 NLAFDATPDYDYLQGLFSKV 276

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 6e-12
 Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 32/250 (12%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITR----IGTVRHKNLIRLLGFCYNRHQAYLLYDY 684
             TG   ++K +       K            +   RH  L  L        +   + +Y
Sbjct: 27  KATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEY 86

Query: 685 LPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPH 744
              G L   +  +     + +     A  +  L +     + + D+K  N++ D++    
Sbjct: 87  ANGGELFFHLS-RERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIK 145

Query: 745 LAEFGF-------KYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           + +FG            +   G+             Y        +D +G G ++ E++ 
Sbjct: 146 ITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRA-----VDWWGLGVVMYEMMC 200

Query: 798 NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSM 857
            GRL       +       L E+    E+    +L  E K    +     +  P  R   
Sbjct: 201 -GRLPFYNQDHER------LFELILMEEIRFPRTLSPEAK---SLLAGLLKKDPKQRLGG 250

Query: 858 -----EEALK 862
                +E ++
Sbjct: 251 GPSDAKEVME 260

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 9e-11
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 14/179 (7%)

Query: 629 LPTGITVSVKKIEWGATRIKIVSEFITRI---GTVRHKNLIRLLGFC------YNRHQAY 679
                 V++KK+                +     V HKN+I LL               Y
Sbjct: 39  AVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVY 98

Query: 680 LLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE 739
           L+ + +      + I+ + D      ++  +  G+  LH        H DLK SNIV   
Sbjct: 99  LVMELMDANLC-QVIQMELDHERMSYLLYQMLCGIKHLHSAGII---HRDLKPSNIVVKS 154

Query: 740 NMEPHLAEFGFKYLTQLAD-GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT 797
           +    + +FG       +   +      +  + E    M  +  +D++  G I+ E++ 
Sbjct: 155 DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVR 213

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 18/225 (8%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
               + +    ++ +    V   +L  + +L       +     G+Q L NL+ L+   N
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             +   P +         L+         I                 ++      + L +
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L    +     +   G    Q  ++   Q           S    L+NL+KL +L    N
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQV----------SDLTPLANLSKLTTLKADDN 183

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSL 241
           +++   P   + +  L  + L +N++S   P   A+  NL +++L
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 7e-08
 Identities = 26/217 (11%), Positives = 62/217 (28%), Gaps = 46/217 (21%)

Query: 328 NCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSN 387
             ++ +++    ++ +  +    + L  I  +     G T      +   + L    + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 388 NPKLGGMIPAQTWS--------------------------------------LPSLQNFS 409
           N                                                   L  L N  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 410 ASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEV 469
               ++             ++    + N   +    ++N  +L  +   +NK+    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 470 LARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVS 506
           LA LP L  + L +N +S   P    + S+L ++ ++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 22/218 (10%)

Query: 64  SLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG 123
           +L N + + A  ++ + +V    + L+ +  L+  G+  +           +L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELS 183
           N + D  P +     T   +          I       +              +    L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 184 NLTKLESLFLFRNQLAGQVPWE--------------FSRVTTLKSLDLSDNRLSGPIPES 229
            L    +     + LAG    +               + ++ L +L   DN++S   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 230 FADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWN 267
            A L NL  + L  N++S   P  L    +L I+ + N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 20/237 (8%)

Query: 225 PIPESFAD--LKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNS 282
            I   F D  L N   ++   + ++ TV ++   L  +  L  +    +    E +   +
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLN 63

Query: 283 KLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSF 342
            L  +++  N      P    +     +L         +++   S  +  +      +  
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 343 SGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSL 402
                     L        + +   G                VS+   L  +        
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI---GNAQVSDLTPLANL-------- 172

Query: 403 PSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLAN 459
             L    A    I+  + P  S  ++  +    N +S   P  ++N   L  + L N
Sbjct: 173 SKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 26/217 (11%), Positives = 63/217 (29%), Gaps = 22/217 (10%)

Query: 160 NMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSD 219
            ++    +    +N++ ++    ++L  + +L  F   +          +  L  L+L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 220 NRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWN------------ 267
           N+++   P           LS    +    +                             
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 268 --NYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPS 325
                   +              +S  N   S    + +   L  L    N  +      
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SP 190

Query: 326 LSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLS 362
           L++  +L+ + L++N  S   PL  +   ++  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 29/216 (13%), Positives = 68/216 (31%), Gaps = 22/216 (10%)

Query: 282 SKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNS 341
           +    +    +N   ++      G  +  L  F    T ++   +   ++L+ L L+DN 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQ 74

Query: 342 FSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWS 401
            +   PLK         +  +       I    +  +         +      +      
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 402 LPSLQNFSA--------------SACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVS 447
              L   +                      +L P  +   ++ +++  N +S   P  ++
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 448 NCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSH 483
           +   L  + L NN++    P  LA    L ++ L++
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 142 HMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQ 201
                 N     I         ++ L+++   L   +P     L +L       N L  +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHL-AE 318

Query: 202 VPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRL 238
           VP        LK L +  N L    P+    +++LR+
Sbjct: 319 VPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 51/316 (16%), Positives = 99/316 (31%), Gaps = 25/316 (7%)

Query: 212 LKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL--PSLEILFIWN-N 268
              L+L++  LS  +PE      +L  L    N ++  +PE    L    ++   +   +
Sbjct: 40  AHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 269 YFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSN 328
                L      N++L  +    N+    I     +       +  S  F  + +  L  
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 329 CSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNN 388
              L  L      ++    LK      ++   +           ++     L      NN
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 389 PKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSIS--------VIESHMNNLSG 440
                     +    ++++   +          F                   ++N  S 
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 441 TIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSL 500
            I         LE ++++NNKLI  +P +  R   L  L  S N L+ ++P       +L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP---ELPQNL 326

Query: 501 TVLNVSFNDISGSIPS 516
             L+V +N +    P 
Sbjct: 327 KQLHVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 192 FLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVP 251
             + N  + ++        +L+ L++S+N+L   +P        L  L   +N ++  VP
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVP 320

Query: 252 ESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLR 285
           E      +L+ L +  N      P+       LR
Sbjct: 321 EL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 4e-05
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 20  LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFS 79
           L +LN+S+N    + P     L     L  S N+ +   P   Q+L+    L    N   
Sbjct: 286 LEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQNLK---QLHVEYNPLR 337

Query: 80  GSVPAEISQLEHLKVLN 96
              P     +E L++ +
Sbjct: 338 -EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 24  NLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVP 83
               N+ S +         SL  L++S N      P     L     L A  N  +  VP
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVP 320

Query: 84  AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF 118
                L+    L++  +      P    S + L  
Sbjct: 321 ELPQNLKQ---LHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 444 ESVSNCVE--LERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLT 501
             + +C++     ++L N  L  S+PE+    P L  L  S NSL+ ++P       SL 
Sbjct: 30  SRLRDCLDRQAHELELNNLGL-SSLPELP---PHLESLVASCNSLT-ELPE---LPQSLK 81

Query: 502 VLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCH 543
            L V  N++        +L  +G S                 
Sbjct: 82  SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLK 123

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 53.3 bits (126), Expect = 6e-08
 Identities = 41/320 (12%), Positives = 84/320 (26%), Gaps = 34/320 (10%)

Query: 234 KNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSG----SLPENLGRNSKLRWVDV 289
           K+L+L ++   +   +V   L++  S++ + +  N         L EN+     L   + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 290 STNNFNGSIPPDICSGGVLFKLILFSN----NFTGSLSPSLSNCSSLVRLRLEDNSFSGE 345
           S + F G +  +I     L    L           S +         +   L  ++    
Sbjct: 67  S-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 346 IPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP---KLGGMIPAQTWSL 402
           + L  + L       ++R      +      A  L       N               S 
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 403 PSLQNFSASACNITGNLPPFKSCKSIS----------VIESHMNNLSGTIPESVSNCVEL 452
             L         I          + ++             +  +  S  +  ++ +   L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 453 ERIDLANNKLIGSIPEVLAR------LPVLGVLDLSHNSLSGQIP-----AKFGSCSSLT 501
             + L +  L       +           L  L L +N +                  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 502 VLNVSFNDISGSIPSGKVLR 521
            L ++ N  S        +R
Sbjct: 306 FLELNGNRFSEEDDVVDEIR 325

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 42/330 (12%), Positives = 87/330 (26%), Gaps = 35/330 (10%)

Query: 167 LDIAGANLSGSIPKELSNLTKLESLFLFRNQL----AGQVPWEFSRVTTLKSLDLSDNRL 222
           LD        S+   L     ++ + L  N +    A  +    +    L+  + SD   
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-- 69

Query: 223 SGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNS 282
                           +     E    + ++L++ P L  + + +N F  +  E L    
Sbjct: 70  ------------FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 117

Query: 283 KLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSF 342
                       N  + P   +        L  N    +  P  S      RL       
Sbjct: 118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177

Query: 343 SGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSL 402
             +       L  +  +                 A   E   +         + +   ++
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 403 PSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL 462
                 +     +   L   +   ++    S + N+             L+ + L  N++
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG------------LQTLRLQYNEI 285

Query: 463 IGSIPEVLA-----RLPVLGVLDLSHNSLS 487
                  L      ++P L  L+L+ N  S
Sbjct: 286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 37/339 (10%), Positives = 82/339 (24%), Gaps = 45/339 (13%)

Query: 22  DLNLSHNSFSG--QFPVEIFNLTSLISLDISRNNFS-------GHFPGGIQSLRNLLVLD 72
            L L   +          +    S+  + +S N                 + L      D
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 73  AFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPA 132
            F+      +P  +  L    +             +   + +      L+ +   + +  
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 133 ELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLF 192
               L      +I     +  +  +  N   ++ +      L     KE +   +   L 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 193 LFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPE 252
                +   +  E      L+ L          + ++              +  S  +  
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-----------FTHLGSSALAI 237

Query: 253 SLVQLPSLEILFIWNNYFSGSLPENLGR------NSKLRWVDVSTNNFNGSIPPDICSGG 306
           +L   P+L  L + +   S      +        N  L+ + +  N         + +  
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV- 296

Query: 307 VLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGE 345
                                    L+ L L  N FS E
Sbjct: 297 ------------------IDEKMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 4/94 (4%)

Query: 454 RIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQ----IPAKFGSCSSLTVLNVSFND 509
           ++D    +   S+  VL     +  + LS N++  +    +     S   L +   S   
Sbjct: 11  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70

Query: 510 ISGSIPSGKVLRLMGSSAYAGNPKLCGAPLQPCH 543
                        +   A    PKL    L    
Sbjct: 71  TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 9e-08
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 17/243 (6%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 82
                +  + + P ++    + I L            G      +L  ++   N     +
Sbjct: 13  FLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 83  PAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLN----DQIPAELGMLK 138
            A++                +    +           +L  +         +     + K
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 139 TVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL 198
            +  ++   N +       +G   E   L +    +        +     E      N L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 199 AGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLP 258
                  F   +    LD+S  R+         +LK LR  S            +L +LP
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST----------YNLKKLP 239

Query: 259 SLE 261
           +LE
Sbjct: 240 TLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 24/236 (10%), Positives = 51/236 (21%), Gaps = 10/236 (4%)

Query: 285 RWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSG 344
           R      +     IP D+       +L             + S    L ++ +  N    
Sbjct: 11  RVFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 345 EIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPS 404
            I           +                   +      +  +      +P        
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 405 LQNFSASACNITGNLPPFKSCKSISVIESHMN----NLSGTIPESVSNCVELERIDLANN 460
            +       NI  +     S   +S     +      +      + +     E     NN
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 461 KLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPS 516
            L     +V        +LD+S   +         +   L   +         +P+
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 20/219 (9%), Positives = 48/219 (21%), Gaps = 30/219 (13%)

Query: 201 QVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSL 260
           ++P +         L     +L      +F+   +L  + +  N++   +   +      
Sbjct: 22  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 261 EILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN------------------------- 295
                     +          +      +  +N                           
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 296 ---GSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQ 352
                    +        L L  N      + + +          ++N+        F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 353 LPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKL 391
                 +D+SR          +    KL   +  N  KL
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 29/224 (12%), Positives = 55/224 (24%), Gaps = 9/224 (4%)

Query: 81  SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV 140
            +P+++    +   L    +         F  F  LE + ++ N + + I A++      
Sbjct: 22  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 141 THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS----GSIPKELSNLTKLESLFLFRN 196
            H                   +      +  +N        + K  S    L  +    N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ 256
               +             L L+ N +      +F   +   L     N +     +    
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPP 300
                IL I            L    KLR            +P 
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARS---TYNLKKLPT 240

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 9e-08
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 23  LNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV 82
           L+L+H   +      +  L  +  LD+S N      P  + +LR L VL A  N+     
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL--EN 57

Query: 83  PAEISQLEHLKVLNLAGSYF-SGPIPSQFGSFKSLEFLHLAGNLL 126
              ++ L  L+ L L  +            S   L  L+L GN L
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 27/125 (21%)

Query: 165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVP--------------------- 203
           + L +A  +L+  +   L  L  +  L L  N+L    P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 204 WEFSRVTTLKSLDLSDNRL-SGPIPESFADLKNLRLLSLMYNEMSG--TVPESLVQ-LPS 259
              + +  L+ L L +NRL      +       L LL+L  N +     + E L + LPS
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 260 LEILF 264
           +  + 
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 93  KVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG 152
           +VL+LA    +  +         +  L L+ N L    P  L  L+ +  ++   N  + 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 153 NIPWQLGNMSEVQYLDIAGANL-SGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTT 211
                  N+  +Q L +    L   +  + L +  +L  L L  N L  +   +      
Sbjct: 58  VDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 212 LKSL 215
           L S+
Sbjct: 116 LPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 7/125 (5%)

Query: 358 YIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITG 417
            + L+    T  +   + Q   + + ++S+N +L  + PA   +L  L+   AS   +  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHN-RLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 418 NLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLI---GSIPEVLARLP 474
                   +   ++  +         + + +C  L  ++L  N L    G    +   LP
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 475 VLGVL 479
            +  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 191 LFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTV 250
           L L    L   V     ++  +  LDLS NRL    P + A L+ L +L    +     V
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ-ASDNALENV 58

Query: 251 PESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG 296
                     E+L   N     +  + L    +L  +++  N+   
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 26/100 (26%)

Query: 436 NNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVL------------------- 476
            +L  T+   +   + +  +DL++N+L    P  LA L  L                   
Sbjct: 8   KDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVANL 64

Query: 477 ---GVLDLSHNSL-SGQIPAKFGSCSSLTVLNVSFNDISG 512
                L L +N L          SC  L +LN+  N +  
Sbjct: 65  PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 28/132 (21%)

Query: 237 RLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNG 296
           R+L L + ++  TV   L QL  +  L + +N      P  L     L  +  S N    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALE- 56

Query: 297 SIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDI 356
                + +   L +L+L +N                                     P +
Sbjct: 57  -NVDGVANLPRLQELLLCNNRLQ-----------------------QSAAIQPLVSCPRL 92

Query: 357 NYIDLSRNGFTG 368
             ++L  N    
Sbjct: 93  VLLNLQGNSLCQ 104

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 24/139 (17%)

Query: 626 KAVLPTGITVSVKKIEWGATRIKIV-----------SEFITRIGTVRHKNLIRLLGFCYN 674
                      VK  + G T  K V           S    R      + L +L G    
Sbjct: 18  NCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVP 77

Query: 675 RHQAYLLYDYLPNGNLSE----KIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL 730
           +      Y +  N  L E    K   +       +++  +   +   +H     I HGDL
Sbjct: 78  KV-----YAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDL 129

Query: 731 KASNIVFDENMEPHLAEFG 749
              N++  E     + +F 
Sbjct: 130 SQYNVLVSE-EGIWIIDFP 147

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 2e-07
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 450 VELERIDLANNKLIGS-IPEVLARLPVLGVLDLSHNSLSGQ----IPAKFGSCSSLTVLN 504
           ++++ +D+   +L  +   E+L  L    V+ L    L+      I +      +L  LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 505 VSFNDISGSIPS 516
           +  N++      
Sbjct: 62  LRSNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 203 PWEFSRVTTLKSLDLSDNRLSG----PIPESFADLKNLRLLSLMYNEMSGTVPESLVQ-- 256
                  + L+ L L+D  +S      +  +     +LR L L  N +       LV+  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 257 ---LPSLEILFIWNNYFSGSLPENLG----RNSKLR 285
                 LE L +++ Y+S  + + L         LR
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 13/95 (13%)

Query: 182 LSNLTKLESLFLFRNQL----AGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFAD----- 232
               + L  L+L    +       +        +L+ LDLS+N L         +     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 233 LKNLRLLSLMYNEMSGTVPESLVQL----PSLEIL 263
              L  L L     S  + + L  L    PSL ++
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 9/79 (11%)

Query: 447 SNCVELERIDLANNKL----IGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGS-----C 497
                L  + LA+  +      S+   L     L  LDLS+N L      +         
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 498 SSLTVLNVSFNDISGSIPS 516
             L  L +     S  +  
Sbjct: 426 CLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 163 EVQYLDIAGANLSGSIPKEL-SNLTKLESLFLFRNQLAGQVPWEFSRV----TTLKSLDL 217
           ++Q LDI    LS +   EL   L + + + L    L      + S        L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 218 SDNRLSGPIPESFADL-----KNLRLLSLMYNEM 246
             N L                  ++ LSL    +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 9e-06
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 21/95 (22%)

Query: 212 LKSLDLSDNRLS-GPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYF 270
           ++SLD+    LS     E    L+  +++ L    ++    + +                
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI---------------- 47

Query: 271 SGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSG 305
                  L  N  L  +++ +N         +  G
Sbjct: 48  ----SSALRVNPALAELNLRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 53/470 (11%), Positives = 113/470 (24%), Gaps = 38/470 (8%)

Query: 19  ELVDLNLSHNSFSGQFPVEIF-NLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDA 73
           ++  L++     S     E+   L     + +     +          ++    L  L+ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 74  FSNSFSGSVPAEISQL-----EHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND 128
            SN         + Q        ++ L+L     +G       S           +L ++
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 129 QIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKL 188
            +      L     ++      +  + +   + +  + L              +SN    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 189 ESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG 248
           E+      Q     P +   +        SDN        +         L        G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 249 TVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVL 308
                   L     L     +  G   +  G   ++     S    + +       G  L
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 309 FKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTG 368
               L             S   +        +  +    L   Q+ +    D    G   
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED---AGVRE 359

Query: 369 GIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSI 428
                    S L    +++                   + S S+C+         +  S+
Sbjct: 360 LCQGLGQPGSVLRVLWLADC------------------DVSDSSCSSLAAT--LLANHSL 399

Query: 429 SVIESHMNNLSGTIPESVSNCVE-----LERIDLANNKLIGSIPEVLARL 473
             ++   N L       +   V      LE++ L +      + + L  L
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 10/81 (12%)

Query: 436 NNLSGT-IPESVSNCVELERIDLANNKL----IGSIPEVLARLPVLGVLDLSHNSLSGQI 490
             LS     E +    + + + L +  L       I   L   P L  L+L  N L    
Sbjct: 12  EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG 71

Query: 491 PAKFGS-----CSSLTVLNVS 506
                         +  L++ 
Sbjct: 72  VHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 13/92 (14%)

Query: 17  FNELVDLNLSHNSFSGQ----FPVEIFNLTSLISLDISRNNFSGHFPGGI-----QSLRN 67
            + L  L L+    S          +    SL  LD+S N         +     Q    
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 68  LLVLDAFSNSFSGSVPAEISQLE----HLKVL 95
           L  L  +   +S  +   +  LE     L+V+
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 421 PFKSCKSISVIESHMNNLSGT----IPESVSNCVELERIDLANNKLIGSIPEVLAR---- 472
             +    + V+     ++S +    +  ++     L  +DL+NN L  +    L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 473 -LPVLGVLDLSHNSLSGQIPAKFG----SCSSLTVL 503
              +L  L L     S ++  +         SL V+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 40  NLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQ-----LE 90
             + L  L ++  + S          + +  +L  LD  +N    +   ++ +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 91  HLKVLNLAGSYFSGPIPSQFGSFK 114
            L+ L L   Y+S  +  +  + +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 25/217 (11%)

Query: 629 LPTGITVSVKKI-------EWGATRIKIVSEF----ITRIGTVRHKNLIRLLGFCYNRHQ 677
           +     V++K +       E     IK++        T+  ++   ++++LL    ++  
Sbjct: 35  MVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP 94

Query: 678 AYLLYDYLPNGN-------LSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDL 730
             +    +           + +            +I   +  GL ++H  C   I H D+
Sbjct: 95  NGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG--IIHTDI 152

Query: 731 KASNIVFD-ENMEPHLAEFGFKYLTQLADGSFPAKIAWTE----SGEFYNAMKEEMYMDV 785
           K  N++ +  +   +L +     L            +       S E           D+
Sbjct: 153 KPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADI 212

Query: 786 YGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYN 822
           +    +I E++T   L            D  + ++  
Sbjct: 213 WSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIE 249

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 2/123 (1%)

Query: 420 PPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIP-EVLARLPVLGV 478
           P        S +    +         +     L  + + N + +  +    L  L  L  
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 479 LDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLRLMGSSAYAGNPKLCGAP 538
           L +  + L    P  F     L+ LN+SFN +            +     +GNP  C   
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 539 LQP 541
           L+ 
Sbjct: 121 LRW 123

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 1/104 (0%)

Query: 359 IDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGN 418
           +  +R+G        +  A  L    + N   L  +       L  L+N +     +   
Sbjct: 13  LRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 419 LPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL 462
            P            +   N   ++       + L+ + L+ N L
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 11/150 (7%)

Query: 188 LESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIP-ESFADLKNLRLLSLMYNEM 246
              L   R+               L  L + + +    +       L  LR L+++ + +
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 247 SGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGG 306
               P++    P L  L +  N    SL     +   L+ + +S N  +       CS  
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH-------CSCA 120

Query: 307 VLFKLILFSNNFTGSLSPSLSNCSSLVRLR 336
            L  L  +     G +      C     L 
Sbjct: 121 -LRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 16/199 (8%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
             E +   L   + +    V   +L  + +L   R         G++ L NL  ++  +N
Sbjct: 17  LAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 72

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             +   P +        ++N        P+ +         F +   ++   +    L  
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
           L+  ++     +   G    Q  N S  Q  D+          K L+NLT LE L +  N
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDL----------KPLANLTTLERLDISSN 182

Query: 197 QLAGQVPWEFSRVTTLKSL 215
           +++       +++T L+SL
Sbjct: 183 KVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 24/193 (12%)

Query: 327 SNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVS 386
           +  +  ++  L   + +  +    + L  +  +   R G        +   + L   N S
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 70

Query: 387 NNPKLGGM----------------IPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISV 430
           NN                        A    L +L N +                   ++
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 431 IESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQI 490
               +++ + +   ++S    L++++ ++N++    P  LA L  L  LD+S N +S  I
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD-I 187

Query: 491 PAKFGSCSSLTVL 503
                  ++L  L
Sbjct: 188 SV-LAKLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 40/226 (17%), Positives = 69/226 (30%), Gaps = 40/226 (17%)

Query: 17  FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSN 76
           F E +  NL   S +    V    L S+  +  + ++       GIQ L N+  L    N
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGN 78

Query: 77  SFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGM 136
             +      I  L +LK L       +                    +     I   + +
Sbjct: 79  KLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 137 LKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRN 196
            +  +            +  +L  +  +   D   +++       L+ LTKL++L     
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNL----- 183

Query: 197 QLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM 242
                               LS N +S     + A LKNL +L L 
Sbjct: 184 -------------------YLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 30/197 (15%), Positives = 74/197 (37%), Gaps = 16/197 (8%)

Query: 310 KLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGG 369
           K  L   + T +++   +  +S+ ++   ++       +++  LP++  + L+ N  T  
Sbjct: 28  KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFLNGNKLTDI 83

Query: 370 IPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSIS 429
            P    +     + + +    L  +   +     SL++          ++        + 
Sbjct: 84  KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN------GISDINGLVHLPQLE 137

Query: 430 VIESHMNNLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQ 489
            +    N ++     S    ++   ++  +N++   +P  LA L  L  L LS N +S  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLE--DNQISDIVP--LAGLTKLQNLYLSKNHISD- 192

Query: 490 IPAKFGSCSSLTVLNVS 506
           + A      +L VL + 
Sbjct: 193 LRA-LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 16/204 (7%)

Query: 64  SLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAG 123
           +    +  +    S + +V    ++L  +  +    S        Q+    ++  L L G
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFLNG 77

Query: 124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELS 183
           N L D  P  L  LK +  + +  N  +     +     +   L+    +   S    L 
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE----HNGISDINGLV 131

Query: 184 NLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMY 243
           +L +LESL+L  N++               SL+  DN++S  +P   A L  L+ L L  
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLE--DNQISDIVP--LAGLTKLQNLYLSK 187

Query: 244 NEMSGTVPESLVQLPSLEILFIWN 267
           N +S     +L  L +L++L +++
Sbjct: 188 NHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 19/205 (9%)

Query: 325 SLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFN 384
           S    +  ++  L+  S +  +    ++L  I+ I  + +         I     +    
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 385 VSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPE 444
           ++ N KL  +       L +L+N      +               +    + +   +   
Sbjct: 75  LNGN-KLTDI-----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 445 SVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLN 504
            + +  +LE + L NNK+         RL  L  L L  N +S  +P      + L  L 
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184

Query: 505 VSFNDIS-----GSIPSGKVLRLMG 524
           +S N IS       + +  VL L  
Sbjct: 185 LSKNHISDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 33/260 (12%), Positives = 74/260 (28%), Gaps = 66/260 (25%)

Query: 225 PIPESFAD--LKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNS 282
           PI + F+D         +L    ++  V ++  +L S++ +   N+              
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG------- 63

Query: 283 KLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSF 342
                                                      +    ++ +L L  N  
Sbjct: 64  -------------------------------------------IQYLPNVTKLFLNGNKL 80

Query: 343 SGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSL 402
           +   P   + L ++ ++ L  N           +  K      +    + G++       
Sbjct: 81  TDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL-- 136

Query: 403 PSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL 462
                      N   ++        +  +    N +S  +P  ++   +L+ + L+ N +
Sbjct: 137 ----ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 463 IGSIPEVLARLPVLGVLDLS 482
             S    LA L  L VL+L 
Sbjct: 191 --SDLRALAGLKNLDVLELF 208

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 7/136 (5%)

Query: 204 WEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEIL 263
            +++     + LDL   ++   I    A L     +    NE+          L  L+ L
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 264 FIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLS 323
            + NN               L  + ++ N+       D  +       +    N   +  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 324 P----SLSNCSSLVRL 335
                 +     +  L
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 445 SVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLN 504
             +N V    +DL   K I  I  + A L     +D S N +  +    F     L  L 
Sbjct: 13  QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 505 VSFNDISGSIP 515
           V+ N I     
Sbjct: 70  VNNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 37  EIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN 96
           +  N      LD+              +L     +D FS++    +      L  LK L 
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAID-FSDNEIRKLDG-FPLLRRLKTLL 69

Query: 97  LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND----QIPAELGMLKTVTHMEIGYNFYQG 152
           +  +           +   L  L L  N L +       A L  L  +  +       + 
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 153 NIPWQLGNMSEVQYLD 168
              + +  + +V+ LD
Sbjct: 130 YRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 7/140 (5%)

Query: 84  AEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHM 143
           A+ +     + L+L G      I +   +    + +  + N +         +L+ +  +
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 144 EIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG-SIPKELSNLTKLESLFLF---RNQLA 199
            +  N            + ++  L +   +L        L++L  L  L +         
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 200 GQVPWEFSRVTTLKSLDLSD 219
               +   +V  ++ LD   
Sbjct: 129 HYRLYVIYKVPQVRVLDFQK 148

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 418 NLPPFKSCKSISVIESHMNNLSGTIPESVSNCVELERIDLANNKL--IGSIPEVLARLPV 475
              P    ++I V+ +  ++++ T+     N  EL  ++L+NN+L  +  +  ++ + P 
Sbjct: 33  RSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPN 92

Query: 476 LGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFNDISGSIPSGKVLR 521
           L +L+LS N L  +          L  L +  N +S +        
Sbjct: 93  LKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 16  FFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFS 75
           +      L+L       +   ++      + L+   ++ +       +++  LL L+  +
Sbjct: 20  YDGSQQALDLKGL----RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSN 74

Query: 76  NSFSG--SVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAE 133
           N       + + + +  +LK+LNL+G+               LE L L GN L+D    +
Sbjct: 75  NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134

Query: 134 LGMLKTVTHM 143
              +  +   
Sbjct: 135 STYISAIRER 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 9/121 (7%)

Query: 273 SLPENLGR--NSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCS 330
            L   + +  +   + +D+          PD+ +  +   L    ++   +L     N  
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRS----DPDLVAQNIDVVLNR-RSSMAATLRIIEENIP 65

Query: 331 SLVRLRLEDNSFSGEIPLK--FSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNN 388
            L+ L L +N       +     + P++  ++LS N        D  +  KLE   +  N
Sbjct: 66  ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125

Query: 389 P 389
            
Sbjct: 126 S 126

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 12/143 (8%)

Query: 106 IPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQ 165
           +              L  +L   +   +L        +    +     +     N+ E+ 
Sbjct: 12  LKLIMSKRYDGSQQAL--DLKGLRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELL 68

Query: 166 YLDIAGANLSG--SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS 223
            L+++   L     +   +     L+ L L  N+L  +   +  +   L+ L L  N LS
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 224 GPIPES-------FADLKNLRLL 239
               +              L  L
Sbjct: 129 DTFRDQSTYISAIRERFPKLLRL 151

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 16/170 (9%)

Query: 205 EFSRVTTLKSLDLSDNRLSGPIP------ESFADLKNLRLLSLMYNEMSGTVPESLVQLP 258
            F    ++ + +     L G IP       + + LK  + L+L  N +      SL  + 
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGME 70

Query: 259 SLEILFIWNNYFSGSL----PENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILF 314
           +L IL +  N            +      + +  +++ +    +           K+  +
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130

Query: 315 SNNFTGSLSPSLSNCS----SLVRLRLEDNSFSGEIPLKFSQLPDINYID 360
                 +    L +       L     E+N+ S        +LP++  +D
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	872
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.93
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.72
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.2
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.79
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.15
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	94.83
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	91.4

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-49  Score=411.81  Aligned_cols=248  Identities=20%  Similarity=0.286  Sum_probs=197.3

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|...+++.||||+++......+.+.+|++++++++|||||+++|+|.+++..++|||||++|+|.
T Consensus         9 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~   88 (263)
T d1sm2a_           9 FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLS   88 (263)
T ss_dssp             EEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHH
T ss_pred             EEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHH
Confidence            77899999999999999989999999999877767788999999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---cccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PAKI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~~~  765 (872)
                      +++..   ..++..+..|+.|+|+||+|+|+.   +|+||||||+||++|+++.+||+|||+++.........   ..++
T Consensus        89 ~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt  165 (263)
T d1sm2a_          89 DYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP  165 (263)
T ss_dssp             HHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC------------------C
T ss_pred             HHhhccccCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccCCCceeecceecC
Confidence            99865   347899999999999999999999   99999999999999999999999999997654332211   2244


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALL  845 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  845 (872)
                      ..|++||++....++.++|||||||++|||+|++.|++.......     ....+........+.   ....++.+++.+
T Consensus       166 ~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~-----~~~~i~~~~~~~~p~---~~~~~l~~li~~  237 (263)
T d1sm2a_         166 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE-----VVEDISTGFRLYKPR---LASTHVYQIMNH  237 (263)
T ss_dssp             TTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHH-----HHHHHHHTCCCCCCT---TSCHHHHHHHHH
T ss_pred             cccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHH-----HHHHHHhcCCCCCcc---ccCHHHHHHHHH
Confidence            567888998888899999999999999999998777765432211     111111111111111   123467789999


Q ss_pred             cccCCCCCCCCHHHHHHHHcccCCC
Q 002875          846 CTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       846 cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      ||+.||++||||+|++++|+++++.
T Consensus       238 cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         238 CWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HccCCHhHCcCHHHHHHHHHHHHhC
Confidence            9999999999999999999988654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.8e-49  Score=409.56  Aligned_cols=248  Identities=22%  Similarity=0.290  Sum_probs=203.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L  690 (872)
                      ..+.||+|+||.||+|+. .+|+.||||+++......+.+.+|+++|++++|||||+++|+|.+++..|+|||||++|+|
T Consensus        21 ~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l  100 (287)
T d1opja_          21 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL  100 (287)
T ss_dssp             EEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBH
T ss_pred             EeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcch
Confidence            778999999999999986 5689999999987766778899999999999999999999999999999999999999999


Q ss_pred             HHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC---cc
Q 002875          691 SEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF---PA  763 (872)
Q Consensus       691 ~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~---~~  763 (872)
                      .+++..    ..++..+..|+.|||+||+|||+.   +|+||||||+|||+++++.+||+|||+++.........   ..
T Consensus       101 ~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~  177 (287)
T d1opja_         101 LDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK  177 (287)
T ss_dssp             HHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEE
T ss_pred             HHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccceeecCCCCceeecccc
Confidence            999864    458889999999999999999999   99999999999999999999999999998654332221   12


Q ss_pred             cccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHH
Q 002875          764 KIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVA  843 (872)
Q Consensus       764 ~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  843 (872)
                      ++..|++||+.....++.++|||||||++|||+||+.|++.+.....  ....+.....   ...++   ....++.+++
T Consensus       178 g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~--~~~~i~~~~~---~~~~~---~~~~~l~~li  249 (287)
T d1opja_         178 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKDYR---MERPE---GCPEKVYELM  249 (287)
T ss_dssp             ECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--HHHHHHTTCC---CCCCT---TCCHHHHHHH
T ss_pred             ccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHH--HHHHHhcCCC---CCCCc---cchHHHHHHH
Confidence            44557788988888899999999999999999999888775543211  0011111111   11111   2234678899


Q ss_pred             HHcccCCCCCCCCHHHHHHHHcccCCC
Q 002875          844 LLCTRSTPSDRPSMEEALKLLSGLKPH  870 (872)
Q Consensus       844 ~~cl~~dp~~Rpt~~~v~~~L~~~~~~  870 (872)
                      .+||+.||++||||+|+++.|+.+...
T Consensus       250 ~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         250 RACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             HHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            999999999999999999999887654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=404.57  Aligned_cols=244  Identities=20%  Similarity=0.310  Sum_probs=199.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|+..+++.||||+++......+.+.+|++++++++|||||+++|+|.+ +..|+|||||++|+|.
T Consensus        17 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g~L~   95 (272)
T d1qpca_          17 LVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLV   95 (272)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHH
T ss_pred             EeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEEEeCCCCcHH
Confidence            778899999999999999889999999998776677889999999999999999999998865 5679999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC---CCCccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD---GSFPAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~---~~~~~~  764 (872)
                      +++..    ..+|.++..|+.||++||+|||+.   +|+||||||+|||+++++.+||+|||+++......   .....+
T Consensus        96 ~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~g  172 (272)
T d1qpca_          96 DFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF  172 (272)
T ss_dssp             HHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCC
T ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEEccCCccccccccCC
Confidence            98765    468999999999999999999998   99999999999999999999999999998654322   112234


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|++||+.....++.++|||||||++|||+||+.|++.......     ....+........++   ...+++.+++.
T Consensus       173 t~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~-----~~~~i~~~~~~~~p~---~~~~~l~~li~  244 (272)
T d1qpca_         173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE-----VIQNLERGYRMVRPD---NCPEELYQLMR  244 (272)
T ss_dssp             CTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-----HHHHHHTTCCCCCCT---TCCHHHHHHHH
T ss_pred             cccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHH-----HHHHHHhcCCCCCcc---cChHHHHHHHH
Confidence            4567888988888899999999999999999998888765432211     111111111111111   22346778999


Q ss_pred             HcccCCCCCCCCHHHHHHHHccc
Q 002875          845 LCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +||+.||++||||+||++.|+.+
T Consensus       245 ~cl~~~P~~Rpt~~ei~~~L~~~  267 (272)
T d1qpca_         245 LCWKERPEDRPTFDYLRSVLEDF  267 (272)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHHHhhhh
Confidence            99999999999999999998764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-47  Score=393.73  Aligned_cols=244  Identities=16%  Similarity=0.192  Sum_probs=200.7

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|+..+++.||||+++.+....+.+.+|+.++++++|||||+++|+|.+++..++||||+++|+|.
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~   87 (258)
T d1k2pa_           8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLL   87 (258)
T ss_dssp             CCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHH
T ss_pred             EeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHH
Confidence            77899999999999999988999999999887777788999999999999999999999999999999999999999999


Q ss_pred             HHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---Ccccc
Q 002875          692 EKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---FPAKI  765 (872)
Q Consensus       692 ~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---~~~~~  765 (872)
                      +++..   ..++..+.+++.|+|+||+|||+.   +|+||||||+||++++++.+||+|||+++........   ...++
T Consensus        88 ~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t  164 (258)
T d1k2pa_          88 NYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP  164 (258)
T ss_dssp             HHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCC
T ss_pred             HhhhccccCCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCC
Confidence            99754   457889999999999999999999   9999999999999999999999999999765433221   12245


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      .+|+|||+.....++.++|||||||++|||+| |+.||..... ..  ...   .+........+..   ..+++.+++.
T Consensus       165 ~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~-~~--~~~---~i~~~~~~~~p~~---~~~~l~~li~  235 (258)
T d1k2pa_         165 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN-SE--TAE---HIAQGLRLYRPHL---ASEKVYTIMY  235 (258)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCH-HH--HHH---HHHTTCCCCCCTT---CCHHHHHHHH
T ss_pred             CCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCH-HH--HHH---HHHhCCCCCCccc---ccHHHHHHHH
Confidence            66788999888889999999999999999999 5666653321 11  111   1111111111221   2246779999


Q ss_pred             HcccCCCCCCCCHHHHHHHHccc
Q 002875          845 LCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      +||+.||++||||+|++++|.++
T Consensus       236 ~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         236 SCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             HTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             HHccCCHhHCcCHHHHHHHhhCC
Confidence            99999999999999999999764

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-48  Score=396.78  Aligned_cols=239  Identities=16%  Similarity=0.214  Sum_probs=197.8

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|+. .+|+.||||++....    ...+.+.+|++++++++|||||++++++.+++..|+|||||+
T Consensus        10 i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~   89 (263)
T d2j4za1          10 IGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAP   89 (263)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecC
Confidence            788999999999999986 579999999997532    235678899999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      +|+|.+++..  ..++.+...++.||++||+|||+.   +|+||||||+|||++.++.+||+|||+++...........+
T Consensus        90 ~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~G  166 (263)
T d2j4za1          90 LGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCG  166 (263)
T ss_dssp             TCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETTE
T ss_pred             CCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecCCCcccccCC
Confidence            9999999865  568889999999999999999999   99999999999999999999999999997654443333446


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|++||+..+..++.++||||+||++|||+||+.||.+.....      ....+.... ...++   ...+++.+++.
T Consensus       167 t~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~~li~  236 (263)
T d2j4za1         167 TLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE------TYKRISRVE-FTFPD---FVTEGARDLIS  236 (263)
T ss_dssp             EGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHTTC-CCCCT---TSCHHHHHHHH
T ss_pred             CCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHH------HHHHHHcCC-CCCCc---cCCHHHHHHHH
Confidence            777899999988889999999999999999999999986433111      111111111 11111   12346778999


Q ss_pred             HcccCCCCCCCCHHHHHHH
Q 002875          845 LCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +||+.||++|||++|++++
T Consensus       237 ~~L~~dp~~R~t~~eil~h  255 (263)
T d2j4za1         237 RLLKHNPSQRPMLREVLEH  255 (263)
T ss_dssp             HHTCSSGGGSCCHHHHHTC
T ss_pred             HHccCCHhHCcCHHHHHcC
Confidence            9999999999999999864

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-48  Score=400.14  Aligned_cols=247  Identities=17%  Similarity=0.214  Sum_probs=190.5

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeecc---chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWG---ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~---~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|+..  ..||||+++..   ....+.|.+|+++|++++|||||+++|++.+ +..++|||||++|
T Consensus        12 ~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~Ey~~~g   88 (276)
T d1uwha_          12 VGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGS   88 (276)
T ss_dssp             CCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCCEE
T ss_pred             EEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEecCCCC
Confidence            7789999999999999864  36999999653   3346788999999999999999999999865 5689999999999


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----CC
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----SF  761 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----~~  761 (872)
                      +|.+++..   ..++.++..|+.|||+||+|||+.   +||||||||+|||++.++.+||+|||+++.......    ..
T Consensus        89 ~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~  165 (276)
T d1uwha_          89 SLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ  165 (276)
T ss_dssp             EHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC------------
T ss_pred             CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccc
Confidence            99999964   368999999999999999999999   999999999999999999999999999976543221    12


Q ss_pred             cccccccCchhhhcc---cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          762 PAKIAWTESGEFYNA---MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~---~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      ..++..|++||++..   ..++.++|||||||++|||+||+.||.+...... ...........+......   .+..++
T Consensus       166 ~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~-~~~~~~~~~~~p~~~~~~---~~~~~~  241 (276)
T d1uwha_         166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ-IIFMVGRGYLSPDLSKVR---SNCPKA  241 (276)
T ss_dssp             CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-HHHHHHHTSCCCCGGGSC---TTCCHH
T ss_pred             cccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHH-HHHHHhcCCCCCcchhcc---ccchHH
Confidence            235556778888753   3478899999999999999999999875432111 000000111111100111   123356


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.||++||||+|++++|+.++
T Consensus       242 l~~li~~cl~~dp~~RPt~~~il~~Le~l~  271 (276)
T d1uwha_         242 MKRLMAECLKKKRDERPLFPQILASIELLA  271 (276)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            778999999999999999999999998774

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-47  Score=398.98  Aligned_cols=245  Identities=16%  Similarity=0.229  Sum_probs=199.5

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      .|.  ..+.||+|+||+||+|.. .+|+.||||+++... ...+.+.+|++++++++|||||++++++.+++..|+||||
T Consensus        21 ~Y~--~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          21 KYT--RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             TBC--SCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             ccE--EEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEe
Confidence            455  889999999999999985 689999999997543 3466789999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCC
Q 002875          685 LPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSF  761 (872)
Q Consensus       685 ~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~  761 (872)
                      |++|+|.+++.+ ..+..+...|+.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......  ...
T Consensus        99 ~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~  175 (293)
T d1yhwa1          99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST  175 (293)
T ss_dssp             CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCC
T ss_pred             cCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeeccccccccc
Confidence            999999998865 468888999999999999999999   99999999999999999999999999997654322  222


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|++||++.+..++.++||||+||++|||+||+.||.+......      ........ ....+........+.+
T Consensus       176 ~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~------~~~~~~~~-~~~~~~~~~~s~~~~~  248 (293)
T d1yhwa1         176 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA------LYLIATNG-TPELQNPEKLSAIFRD  248 (293)
T ss_dssp             CCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHHC-SCCCSSGGGSCHHHHH
T ss_pred             cccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHH------HHHHHhCC-CCCCCCcccCCHHHHH
Confidence            3467778899999888899999999999999999999999975432110      00111000 0001111223456788


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+||+.||++|||++|++++
T Consensus       249 li~~~L~~dP~~R~s~~eil~H  270 (293)
T d1yhwa1         249 FLNRCLDMDVEKRGSAKELLQH  270 (293)
T ss_dssp             HHHHHTCSSTTTSCCHHHHTTC
T ss_pred             HHHHHccCChhHCcCHHHHhcC
Confidence            9999999999999999999864

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-47  Score=392.61  Aligned_cols=242  Identities=16%  Similarity=0.173  Sum_probs=192.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||+||+|+. .+|+.||||+++....  ..+.+.+|++++++++|||||++++++.+++..|+|||||++|
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg   88 (271)
T d1nvra_           9 LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGG   88 (271)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTE
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCC
Confidence            789999999999999985 6799999999975432  3456889999999999999999999999999999999999999


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC----CCCc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD----GSFP  762 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~----~~~~  762 (872)
                      +|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+|||+++++.+||+|||+|+......    ....
T Consensus        89 ~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~  165 (271)
T d1nvra_          89 ELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKM  165 (271)
T ss_dssp             EGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCC
T ss_pred             cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccce
Confidence            99999975  357888899999999999999999   99999999999999999999999999998653221    1223


Q ss_pred             ccccccCchhhhcccCC-cccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKE-EMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~-~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      .++..|++||++.+..+ +.++||||+||++|||+||+.||......... ..    ......  ...........++.+
T Consensus       166 ~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~-~~----~~~~~~--~~~~~~~~~s~~~~~  238 (271)
T d1nvra_         166 CGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-YS----DWKEKK--TYLNPWKKIDSAPLA  238 (271)
T ss_dssp             CSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHH-HH----HHHTTC--TTSTTGGGSCHHHHH
T ss_pred             eeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHH-HH----HHhcCC--CCCCccccCCHHHHH
Confidence            36677888998876654 67799999999999999999999754322110 00    000110  001111223356778


Q ss_pred             HHHHcccCCCCCCCCHHHHHHH
Q 002875          842 VALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++.+||+.||++|||++|++++
T Consensus       239 li~~~L~~dP~~R~t~~eil~h  260 (271)
T d1nvra_         239 LLHKILVENPSARITIPDIKKD  260 (271)
T ss_dssp             HHHHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHHHcCCChhHCcCHHHHhcC
Confidence            9999999999999999999875

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.4e-47  Score=396.98  Aligned_cols=244  Identities=18%  Similarity=0.261  Sum_probs=186.1

Q ss_pred             hhhhccCCCCCceeeeecC-CC---cEEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TG---ITVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g---~~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|... +|   ..||||++...  ....+.|.+|+++|++++|||||+++|+|.+++..|+|||||
T Consensus        30 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~  109 (299)
T d1jpaa_          30 IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFM  109 (299)
T ss_dssp             EEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             EeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEec
Confidence            5678999999999999863 33   36899998653  234567899999999999999999999999999999999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC-
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF-  761 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~-  761 (872)
                      ++|+|.+++..   ..+|.++..|+.|||+||+|||+.   +|+||||||+|||++.++.+||+|||+++......... 
T Consensus       110 ~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~  186 (299)
T d1jpaa_         110 ENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPT  186 (299)
T ss_dssp             TTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------------
T ss_pred             CCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccceEEECCCCcEEECCcccceEccCCCCcce
Confidence            99999998876   358999999999999999999998   99999999999999999999999999997654322110 


Q ss_pred             ------cccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          762 ------PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       762 ------~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                            ..++..|++||......++.++|||||||++|||+| |+.||.+.....      ....+......+.+.   +
T Consensus       187 ~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~------~~~~i~~~~~~~~~~---~  257 (299)
T d1jpaa_         187 YTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQD------VINAIEQDYRLPPPM---D  257 (299)
T ss_dssp             ---------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHHHHHTTCCCCCCT---T
T ss_pred             eeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHH------HHHHHHcCCCCCCCc---c
Confidence                  113445778888888889999999999999999999 677776432111      111111111111111   2


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ...++.+++.+||+.||++||||+||++.|+.+
T Consensus       258 ~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~  290 (299)
T d1jpaa_         258 CPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKM  290 (299)
T ss_dssp             CCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            334677899999999999999999999999875

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-47  Score=402.86  Aligned_cols=247  Identities=16%  Similarity=0.169  Sum_probs=197.0

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||+||+|.. .+|+.||||+++...  ...+.+.+|+.+|++++|||||+++++|.++++.|+|||||++|
T Consensus        10 ~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg   89 (322)
T d1s9ja_          10 KISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGG   89 (322)
T ss_dssp             EEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTE
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCC
Confidence            789999999999999995 689999999997542  33567889999999999999999999999999999999999999


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCcccc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKI  765 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~  765 (872)
                      +|.+++.+  ..++.....++.|+++||+|||+ +   +|+||||||+|||+++++.+||+|||+|+...........++
T Consensus        90 ~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT  166 (322)
T d1s9ja_          90 SLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT  166 (322)
T ss_dssp             EHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---CCS
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhC---CEEccccCHHHeeECCCCCEEEeeCCCccccCCCccccccCC
Confidence            99999965  56888899999999999999996 5   899999999999999999999999999986554444444577


Q ss_pred             cccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-----cccc---------------c------
Q 002875          766 AWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-----GLLG---------------E------  819 (872)
Q Consensus       766 ~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-----~~~~---------------~------  819 (872)
                      .+|++||+..+..++.++||||+||++|||+||+.||.+..........     +...               .      
T Consensus       167 ~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (322)
T d1s9ja_         167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRP  246 (322)
T ss_dssp             SCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------C
T ss_pred             ccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCccccccccccccccccccc
Confidence            8899999999889999999999999999999999999754422110000     0000               0      


Q ss_pred             ----------cccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          820 ----------MYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       820 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                .....+...+.  .....++.+++.+||+.||++|||++|+++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~dli~~~L~~dP~~R~ta~e~L~H  298 (322)
T d1s9ja_         247 PMAIFELLDYIVNEPPPKLPS--GVFSLEFQDFVNKCLIKNPAERADLKQLMVH  298 (322)
T ss_dssp             CCCHHHHHHHHHTSCCCCCCB--TTBCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             chhHHHHHhhhhccCCccCcc--ccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence                      00000000000  0113467899999999999999999999875

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-46  Score=390.94  Aligned_cols=245  Identities=18%  Similarity=0.245  Sum_probs=197.0

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCChH
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGNLS  691 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~L~  691 (872)
                      ..+.||+|+||.||+|+..+++.||||+++......+.|.+|+.++++++|||||+++|+|.+ +..++|||||++|+|.
T Consensus        21 i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~~~lv~Ey~~~g~l~   99 (285)
T d1fmka3          21 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLL   99 (285)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHH
T ss_pred             EeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEec-CCeEEEEEecCCCchh
Confidence            888999999999999999888899999998776667889999999999999999999999955 5689999999999999


Q ss_pred             HHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC---Cccc
Q 002875          692 EKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS---FPAK  764 (872)
Q Consensus       692 ~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~---~~~~  764 (872)
                      +++..    ..+|.++..|+.|||+||+|||+.   +|+||||||+|||+|+++.+||+|||+++........   ...+
T Consensus       100 ~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~g  176 (285)
T d1fmka3         100 DFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF  176 (285)
T ss_dssp             HHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC--------------C
T ss_pred             hhhhhcccccchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccc
Confidence            98864    479999999999999999999999   9999999999999999999999999999765432221   1224


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|.+||+.....++.++|||||||++|||+||+.|+.........     +..+......+.++   ...+++.+++.
T Consensus       177 t~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~-----~~~i~~~~~~~~~~---~~~~~l~~li~  248 (285)
T d1fmka3         177 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-----LDQVERGYRMPCPP---ECPESLHDLMC  248 (285)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH-----HHHHHTTCCCCCCT---TSCHHHHHHHH
T ss_pred             cccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHH-----HHHHHhcCCCCCCc---ccCHHHHHHHH
Confidence            55678889888888999999999999999999998887754432111     11111111111122   22346778999


Q ss_pred             HcccCCCCCCCCHHHHHHHHcccC
Q 002875          845 LCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       845 ~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +||+.||++||||++|++.|+..-
T Consensus       249 ~cl~~dP~~Rps~~~i~~~L~~~~  272 (285)
T d1fmka3         249 QCWRKEPEERPTFEYLQAFLEDYF  272 (285)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred             HHcccCHhHCcCHHHHHHHHhhhh
Confidence            999999999999999999998654

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-47  Score=389.97  Aligned_cols=243  Identities=19%  Similarity=0.212  Sum_probs=189.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec----CCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN----RHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~----~~~~~lv~e  683 (872)
                      ..++||+|+||+||+|+. .+|+.||||++....   ...+.+.+|+++|++++|||||+++++|++    ++.+|+|||
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE   92 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE   92 (270)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEe
Confidence            456799999999999985 578999999997542   235678899999999999999999999875    356899999


Q ss_pred             ccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC-CCCCeeEccccccccccccCCC
Q 002875          684 YLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD-ENMEPHLAEFGFKYLTQLADGS  760 (872)
Q Consensus       684 y~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~-~~~~~ki~dfg~~~~~~~~~~~  760 (872)
                      ||++|+|.+++.+  ..++.+...++.||++||+|||++ .++|+||||||+|||++ +++.+||+|||+++........
T Consensus        93 ~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~  171 (270)
T d1t4ha_          93 LMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK  171 (270)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBE
T ss_pred             CCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccC
Confidence            9999999999975  468888899999999999999987 12399999999999996 5789999999999765433333


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...+++.|++||++.+ +++.++||||+||++|||+||+.||.+......     ....+......  ........+++.
T Consensus       172 ~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~-----~~~~i~~~~~~--~~~~~~~~~~~~  243 (270)
T d1t4ha_         172 AVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-----IYRRVTSGVKP--ASFDKVAIPEVK  243 (270)
T ss_dssp             ESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH-----HHHHHTTTCCC--GGGGGCCCHHHH
T ss_pred             CcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHH-----HHHHHHcCCCC--cccCccCCHHHH
Confidence            3346667888898765 589999999999999999999999975432111     01111111000  001111234577


Q ss_pred             HHHHHcccCCCCCCCCHHHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +++.+||+.||++|||++|++++
T Consensus       244 ~li~~~l~~dp~~R~s~~ell~H  266 (270)
T d1t4ha_         244 EIIEGCIRQNKDERYSIKDLLNH  266 (270)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHccCCHhHCcCHHHHhCC
Confidence            89999999999999999999864

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-47  Score=391.34  Aligned_cols=243  Identities=17%  Similarity=0.197  Sum_probs=184.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec--CCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN--RHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~--~~~~~lv~ey~  685 (872)
                      ..+.||+|+||+||+|+. .+|+.||||.+....   ...+.+.+|++++++++|||||++++++.+  .+..|+|||||
T Consensus         8 ~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~   87 (269)
T d2java1           8 VLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYC   87 (269)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECC
T ss_pred             EeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecC
Confidence            889999999999999985 689999999997543   235678899999999999999999999965  45689999999


Q ss_pred             CCCChHHHhhC------CCCHHHHHHHHHHHHHHHHHHhhCC--CCCcccCCCCCCCeeeCCCCCeeEcccccccccccc
Q 002875          686 PNGNLSEKIRT------KRDWAAKYKIVLGVARGLCFLHHDC--YPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLA  757 (872)
Q Consensus       686 ~~g~L~~~l~~------~~~~~~~~~i~~~i~~gl~~lH~~~--~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~  757 (872)
                      ++|+|.+++.+      ..++.+.+.++.|++.||+|||+..  ..+|+||||||+|||++.++.+||+|||+++.....
T Consensus        88 ~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~  167 (269)
T d2java1          88 EGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHD  167 (269)
T ss_dssp             TTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC---
T ss_pred             CCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccC
Confidence            99999999853      4688999999999999999999862  125999999999999999999999999999865432


Q ss_pred             CC--CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          758 DG--SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       758 ~~--~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      ..  ....++++|++||++....++.++|||||||++|||+||+.||.+.....      ....+........+.   ..
T Consensus       168 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~------~~~~i~~~~~~~~~~---~~  238 (269)
T d2java1         168 TSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE------LAGKIREGKFRRIPY---RY  238 (269)
T ss_dssp             --------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHTCCCCCCT---TS
T ss_pred             CCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHH------HHHHHHcCCCCCCCc---cc
Confidence            22  22335677889999988889999999999999999999999987432111      111111111111111   12


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+++.+||+.||++|||++|++++
T Consensus       239 s~~l~~li~~~L~~dp~~Rps~~ell~h  266 (269)
T d2java1         239 SDELNEIITRMLNLKDYHRPSVEEILEN  266 (269)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence            3467788999999999999999999864

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-46  Score=389.81  Aligned_cols=242  Identities=15%  Similarity=0.178  Sum_probs=190.2

Q ss_pred             hhh-hccCCCCCceeeeec---CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECE-EAARPQSAAGCKAVL---PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~-~~g~g~~~~v~~~~~---~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+ +||+|+||.||+|+.   .++..||||+++...  ...+.|.+|+++|++++|||||+++|+|.+ +..|+|||||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lvmE~~   90 (285)
T d1u59a_          12 IADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMA   90 (285)
T ss_dssp             EEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             ECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEEEEeC
Confidence            344 499999999999975   346689999997543  345778999999999999999999999976 4579999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      ++|+|.+++..   ..++.++..++.|+|+||+|||+.   +|+||||||+||+++.++.+||+|||+++.......   
T Consensus        91 ~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~  167 (285)
T d1u59a_          91 GGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYT  167 (285)
T ss_dssp             TTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEEC
T ss_pred             CCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhhcccccccccc
Confidence            99999999754   458899999999999999999999   999999999999999999999999999976543221   


Q ss_pred             --CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          760 --SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       760 --~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                        ....++..|++||+.....++.++|||||||++|||+| |+.||.+.....   .   ...+........++   ..+
T Consensus       168 ~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~---~---~~~i~~~~~~~~p~---~~~  238 (285)
T d1u59a_         168 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE---V---MAFIEQGKRMECPP---ECP  238 (285)
T ss_dssp             CCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH---H---HHHHHTTCCCCCCT---TCC
T ss_pred             cccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHH---H---HHHHHcCCCCCCCC---cCC
Confidence              11224455678888887889999999999999999998 788876433211   1   11111111111112   223


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .++.+++.+||+.||++||||.+|.+.|+.
T Consensus       239 ~~l~~li~~cl~~~p~~RPs~~~i~~~L~~  268 (285)
T d1u59a_         239 PELYALMSDCWIYKWEDRPDFLTVEQRMRA  268 (285)
T ss_dssp             HHHHHHHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence            467789999999999999999999998864

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-46  Score=396.58  Aligned_cols=250  Identities=18%  Similarity=0.180  Sum_probs=187.7

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch--hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT--RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      ++.+.|.  ..+.||+|+||+||+|.. .+|+.||||++.....  ..+.+.+|+.+|++++|||||++++++.+++..|
T Consensus         6 di~d~Y~--~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~   83 (307)
T d1a06a_           6 DIRDIYD--FRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLY   83 (307)
T ss_dssp             CGGGTEE--EEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCccceE--EEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            3444566  889999999999999985 5799999999975432  3456788999999999999999999999999999


Q ss_pred             EEEcccCCCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC---CCCCeeEccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD---ENMEPHLAEFGFKYLT  754 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~---~~~~~ki~dfg~~~~~  754 (872)
                      +|||||++|+|.+++...  .++.+...++.|++.||+|||+.   +|+||||||+||++.   +++.+||+|||+++..
T Consensus        84 lvmE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~  160 (307)
T d1a06a_          84 LIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKME  160 (307)
T ss_dssp             EEECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC------
T ss_pred             EEEeccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEeccceeEEc
Confidence            999999999999999763  58888999999999999999999   999999999999994   5789999999999765


Q ss_pred             cccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          755 QLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       755 ~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                      ..... ....++..|++||++.+..++.++||||+||++|||+||+.||.+.....      ....+.........+...
T Consensus       161 ~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~~  234 (307)
T d1a06a_         161 DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAK------LFEQILKAEYEFDSPYWD  234 (307)
T ss_dssp             ------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHTTCCCCCTTTTT
T ss_pred             cCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHH------HHHHHhccCCCCCCcccc
Confidence            43322 22336677889999988889999999999999999999999997543211      011111111111111122


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...+++.+++.+||+.||++|||++|++++
T Consensus       235 ~~s~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         235 DISDSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             CCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            334567899999999999999999999985

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-47  Score=394.77  Aligned_cols=242  Identities=17%  Similarity=0.164  Sum_probs=193.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeecc-chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWG-ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~-~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g~  689 (872)
                      ..+.||+|+||.||+|.. .+|+.||||+++.. ....+.+.+|+++|++++|||||++++++.+++..|+|||||++|+
T Consensus        16 i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~   95 (288)
T d2jfla1          16 IIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGA   95 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             EeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCc
Confidence            778999999999999985 67999999999754 3445678899999999999999999999999999999999999999


Q ss_pred             hHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC--CCCccc
Q 002875          690 LSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD--GSFPAK  764 (872)
Q Consensus       690 L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~--~~~~~~  764 (872)
                      |.+++.+   ..++.+...++.|+++||+|||++   +|+||||||+|||++.++.+||+|||+++......  .....+
T Consensus        96 L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~G  172 (288)
T d2jfla1          96 VDAVMLELERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIG  172 (288)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCS
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccCCCccccccccc
Confidence            9998753   368889999999999999999999   99999999999999999999999999986543211  112335


Q ss_pred             ccccCchhhhc-----ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          765 IAWTESGEFYN-----AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       765 ~~~~~~~e~~~-----~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      +..|++||+..     ...++.++||||+||++|||+||+.||.+.....      .+..+.... .+..........++
T Consensus       173 t~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~------~~~~i~~~~-~~~~~~~~~~s~~~  245 (288)
T d2jfla1         173 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMR------VLLKIAKSE-PPTLAQPSRWSSNF  245 (288)
T ss_dssp             CCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGG------HHHHHHHSC-CCCCSSGGGSCHHH
T ss_pred             ccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHH------HHHHHHcCC-CCCCCccccCCHHH
Confidence            56678888763     4457889999999999999999999987543221      111111111 01111122334567


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+++.+||+.||++|||++|++++
T Consensus       246 ~~li~~~L~~dp~~R~t~~ell~h  269 (288)
T d2jfla1         246 KDFLKKCLEKNVDARWTTSQLLQH  269 (288)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             HHHHHHHccCChhHCcCHHHHhcC
Confidence            889999999999999999999874

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-46  Score=389.30  Aligned_cols=245  Identities=19%  Similarity=0.262  Sum_probs=191.8

Q ss_pred             hhhhccCCCCCceeeeecCCC-----cEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVLPTG-----ITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g-----~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..++||+|+||.||+|...+.     ..||||++....  ...+.|.+|++++++++|||||+++|+|.+.+..++||||
T Consensus        11 ~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~   90 (283)
T d1mqba_          11 RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEY   90 (283)
T ss_dssp             EEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             eeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEe
Confidence            778899999999999986432     479999997543  3355788999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC-
Q 002875          685 LPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS-  760 (872)
Q Consensus       685 ~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~-  760 (872)
                      |.+|++.+++..   ..+|.++..++.|++.|++|||+.   +|+||||||+|||++.++.+||+|||+++........ 
T Consensus        91 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~  167 (283)
T d1mqba_          91 MENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT  167 (283)
T ss_dssp             CTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----------
T ss_pred             cccCcchhhhhcccccccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccchhhcccCCCccc
Confidence            999999998764   458999999999999999999999   9999999999999999999999999999865432211 


Q ss_pred             ----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 ----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 ----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                          ...++..|++||+.....++.++|||||||++|||+||+.|+........     ....+.+....+.+.   +..
T Consensus       168 ~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~---~~~  239 (283)
T d1mqba_         168 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE-----VMKAINDGFRLPTPM---DCP  239 (283)
T ss_dssp             ------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-----HHHHHHTTCCCCCCT---TCB
T ss_pred             eEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHH-----HHHHHhccCCCCCch---hhH
Confidence                12245567888998888999999999999999999998888765432211     111111111111111   233


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .++.+++.+||+.||++||||+||++.|+.+
T Consensus       240 ~~l~~li~~cl~~~p~~RPt~~eil~~L~~l  270 (283)
T d1mqba_         240 SAIYQLMMQCWQQERARRPKFADIVSILDKL  270 (283)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCCHhHCcCHHHHHHHHHHH
Confidence            4677899999999999999999999999765

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-46  Score=391.23  Aligned_cols=240  Identities=16%  Similarity=0.199  Sum_probs=187.6

Q ss_pred             hhccCCCCCceeeeec---CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          614 EEAARPQSAAGCKAVL---PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       614 ~~~g~g~~~~v~~~~~---~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ++||+|+||.||+|..   .+++.||||+++...   ...+.+.+|+++|++++|||||+++|+|.++ ..|+|||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CEEEEEEcCCC
Confidence            5699999999999975   345789999996532   2356789999999999999999999999764 57899999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-----C
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-----S  760 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-----~  760 (872)
                      |+|.++++.  ..++.++..|+.|||+||+|||+.   +|+||||||+|||++.++.+||+|||+++.......     .
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~  168 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT  168 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC--
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhcccccccccccc
Confidence            999999975  468999999999999999999999   999999999999999999999999999976433221     1


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                      ...++..|++||......++.++|||||||++|||+| |+.||.+....+   ...   .+........+.   ..+.++
T Consensus       169 ~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~---~~~---~i~~~~~~~~p~---~~~~~~  239 (277)
T d1xbba_         169 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---VTA---MLEKGERMGCPA---GCPREM  239 (277)
T ss_dssp             --CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HHH---HHHTTCCCCCCT---TCCHHH
T ss_pred             ccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHH---HHH---HHHcCCCCCCCc---ccCHHH
Confidence            1224455778888888888999999999999999998 677776432111   111   111111111122   223467


Q ss_pred             HHHHHHcccCCCCCCCCHHHHHHHHcc
Q 002875          840 LDVALLCTRSTPSDRPSMEEALKLLSG  866 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rpt~~~v~~~L~~  866 (872)
                      .+++.+||+.||++||||+||.+.|+.
T Consensus       240 ~~li~~cl~~dp~~RPs~~~i~~~L~~  266 (277)
T d1xbba_         240 YDLMNLCWTYDVENRPGFAAVELRLRN  266 (277)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHhHCcCHHHHHHHhhC
Confidence            789999999999999999999988864

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-46  Score=384.71  Aligned_cols=244  Identities=20%  Similarity=0.268  Sum_probs=188.1

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEec-CCeeEEEEcccCCCCh
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYN-RHQAYLLYDYLPNGNL  690 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lv~ey~~~g~L  690 (872)
                      ..+.||+|+||.||+|.. +|+.||||+++.. ...+.+.+|++++++++|||||+++|+|.+ ++..|+||||+++|+|
T Consensus        11 ~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L   88 (262)
T d1byga_          11 LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND-ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSL   88 (262)
T ss_dssp             EEEEEEECSSCEEEEEEE-TTEEEEEEECCCC-C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEH
T ss_pred             EeEEEecCCCeEEEEEEE-CCeEEEEEEECcH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCH
Confidence            678899999999999998 6889999999754 345678899999999999999999999965 4678999999999999


Q ss_pred             HHHhhC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccccc
Q 002875          691 SEKIRT----KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAKIA  766 (872)
Q Consensus       691 ~~~l~~----~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~~~  766 (872)
                      .+++..    ..+|..+.+|+.||+.||+|||+.   +|+||||||+||+++.++.+|++|||+++........ ..++.
T Consensus        89 ~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~-~~~~~  164 (262)
T d1byga_          89 VDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT-GKLPV  164 (262)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-------------CCT
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceecCCCCcc-ccccc
Confidence            999965    268999999999999999999999   9999999999999999999999999999865433222 22344


Q ss_pred             ccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHHHc
Q 002875          767 WTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLC  846 (872)
Q Consensus       767 ~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  846 (872)
                      .|.+||+.....++.++|||||||++|||+|++.|++.......  ....+.....+   ..++   ....++.+++.+|
T Consensus       165 ~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~--~~~~i~~~~~~---~~~~---~~~~~~~~li~~c  236 (262)
T d1byga_         165 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGYKM---DAPD---GCPPAVYEVMKNC  236 (262)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG--HHHHHTTTCCC---CCCT---TCCHHHHHHHHHH
T ss_pred             cCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHcCCCC---CCCc---cCCHHHHHHHHHH
Confidence            57788888888899999999999999999996555543332221  11111111111   1111   2234677899999


Q ss_pred             ccCCCCCCCCHHHHHHHHcccCC
Q 002875          847 TRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       847 l~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      |+.||++||||.|++++|+.++.
T Consensus       237 l~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         237 WHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccCHhHCcCHHHHHHHHHHHHh
Confidence            99999999999999999998864

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-46  Score=395.99  Aligned_cols=243  Identities=17%  Similarity=0.198  Sum_probs=191.5

Q ss_pred             hhhhccCCCCCceeeeecCC------CcEEEEEEeecc--chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLPT------GITVSVKKIEWG--ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~------g~~vavK~~~~~--~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||+||+|+...      +..||||++...  ......+.+|+.+|.++ +|||||+++|+|.+++..|+||
T Consensus        41 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~  120 (325)
T d1rjba_          41 FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIF  120 (325)
T ss_dssp             EEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEE
Confidence            77899999999999998532      247999998653  23355788899999998 8999999999999999999999


Q ss_pred             cccCCCChHHHhhCC-------------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee
Q 002875          683 DYLPNGNLSEKIRTK-------------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF  737 (872)
Q Consensus       683 ey~~~g~L~~~l~~~-------------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill  737 (872)
                      |||++|+|.++++..                         .++.+++.|+.||++||+|||+.   +||||||||+||++
T Consensus       121 Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHRDlKp~Nill  197 (325)
T d1rjba_         121 EYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNVLV  197 (325)
T ss_dssp             ECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGEEE
T ss_pred             EcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCchhcccc
Confidence            999999999999653                         46788899999999999999999   99999999999999


Q ss_pred             CCCCCeeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCcc
Q 002875          738 DENMEPHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKP  812 (872)
Q Consensus       738 ~~~~~~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~  812 (872)
                      +.++.+||+|||+|+........    ...++..|++||+.....++.++|||||||++|||+| |+.||.+.....  .
T Consensus       198 ~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~--~  275 (325)
T d1rjba_         198 THGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA--N  275 (325)
T ss_dssp             ETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH--H
T ss_pred             ccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHH--H
Confidence            99999999999999865443322    1224556788898888889999999999999999998 677776433211  1


Q ss_pred             ccccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHc
Q 002875          813 IDGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLS  865 (872)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~  865 (872)
                      ....+.....   ...+.   ....++.+++.+||+.||++||||+|++++|.
T Consensus       276 ~~~~~~~~~~---~~~p~---~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         276 FYKLIQNGFK---MDQPF---YATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             HHHHHHTTCC---CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHhcCCC---CCCCC---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            1111111111   11111   22346788999999999999999999999985

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.9e-46  Score=390.83  Aligned_cols=247  Identities=21%  Similarity=0.256  Sum_probs=199.0

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|+.      .+++.||||+++...  ...+.+.+|++++++++|||||+++++|.+.+..++|||
T Consensus        17 ~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e   96 (301)
T d1lufa_          17 YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFE   96 (301)
T ss_dssp             EEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEE
Confidence            888999999999999974      457899999997543  235678999999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC--------------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeee
Q 002875          684 YLPNGNLSEKIRT--------------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVF  737 (872)
Q Consensus       684 y~~~g~L~~~l~~--------------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill  737 (872)
                      |+++|+|.++++.                          ..++.++..|+.|+|.||+|||+.   +||||||||+|||+
T Consensus        97 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~ivHrDlKp~NILl  173 (301)
T d1lufa_          97 YMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLV  173 (301)
T ss_dssp             CCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             ecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC---CeEeeEEcccceEE
Confidence            9999999999853                          246788999999999999999999   99999999999999


Q ss_pred             CCCCCeeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc
Q 002875          738 DENMEPHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI  813 (872)
Q Consensus       738 ~~~~~~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~  813 (872)
                      |.++.+||+|||+++........    ...++..|++||++....++.++|||||||++|||+||+.|++.+.....   
T Consensus       174 d~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e---  250 (301)
T d1lufa_         174 GENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE---  250 (301)
T ss_dssp             CGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---
T ss_pred             CCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHH---
Confidence            99999999999999755332211    22345668899999988999999999999999999999865543332211   


Q ss_pred             cccccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          814 DGLLGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                        ....+.+......++   ..+.++.+++.+||+.||++||||.||++.|++|..
T Consensus       251 --~~~~v~~~~~~~~p~---~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~~  301 (301)
T d1lufa_         251 --VIYYVRDGNILACPE---NCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE  301 (301)
T ss_dssp             --HHHHHHTTCCCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             --HHHHHHcCCCCCCCc---cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence              111111111111111   223467899999999999999999999999998863

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-46  Score=389.26  Aligned_cols=247  Identities=17%  Similarity=0.178  Sum_probs=198.0

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-------hhHHHHHHHHHHhhccCCCCceeEEEEEecCCe
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-------TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQ  677 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-------~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~  677 (872)
                      +.|.  ..+.||+|+||+||+|.. .+|+.||||+++...       ...+.+.+|+.+|++++|||||+++++|.+++.
T Consensus        10 d~Y~--~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (293)
T d1jksa_          10 DYYD--TGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD   87 (293)
T ss_dssp             GTEE--EEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cCEE--EeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            4455  889999999999999986 689999999997532       125678999999999999999999999999999


Q ss_pred             eEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC----CeeEcccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM----EPHLAEFGFK  751 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~----~~ki~dfg~~  751 (872)
                      .|+|||||++|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||+++.++    .+|++|||++
T Consensus        88 ~~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a  164 (293)
T d1jksa_          88 VILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLA  164 (293)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCCTTC
T ss_pred             EEEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecchhhh
Confidence            9999999999999999965  468888999999999999999999   999999999999998776    4999999999


Q ss_pred             ccccccC-CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCC
Q 002875          752 YLTQLAD-GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSS  830 (872)
Q Consensus       752 ~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (872)
                      +...... .....++..|++||++.+..++.++||||+||++|||+||+.||.+.....      .+..+.........+
T Consensus       165 ~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~------~~~~i~~~~~~~~~~  238 (293)
T d1jksa_         165 HKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE------TLANVSAVNYEFEDE  238 (293)
T ss_dssp             EECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHTTCCCCCHH
T ss_pred             hhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHH------HHHHHHhcCCCCCch
Confidence            7654332 222335667888999988889999999999999999999999987543211      111111111000001


Q ss_pred             chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          831 SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       831 ~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........+.+++.+||+.||++|||++|++++
T Consensus       239 ~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  271 (293)
T d1jksa_         239 YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  271 (293)
T ss_dssp             HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             hcCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            112234567899999999999999999999874

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=7.6e-46  Score=397.22  Aligned_cols=251  Identities=19%  Similarity=0.238  Sum_probs=202.1

Q ss_pred             hhHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeE
Q 002875          602 NDVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAY  679 (872)
Q Consensus       602 ~~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~  679 (872)
                      ..+.+.|.  ..+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|+.+|++++|||||++++++.+++..|
T Consensus        22 ~~il~~Y~--i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   99 (350)
T d1koaa2          22 DHVLDHYD--IHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMV   99 (350)
T ss_dssp             SCGGGTEE--EEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEE
T ss_pred             CCCccCeE--EEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            34556666  889999999999999985 689999999997543 34667889999999999999999999999999999


Q ss_pred             EEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC--CCCCeeEccccccccc
Q 002875          680 LLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD--ENMEPHLAEFGFKYLT  754 (872)
Q Consensus       680 lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~--~~~~~ki~dfg~~~~~  754 (872)
                      +|||||++|+|.+++..   ..++.+...|+.||+.||+|||+.   +||||||||+|||++  .++.+||+|||+++..
T Consensus       100 ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~  176 (350)
T d1koaa2         100 MIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL  176 (350)
T ss_dssp             EEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEEC
T ss_pred             EEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheec
Confidence            99999999999999954   358889999999999999999999   999999999999996  4578999999999765


Q ss_pred             cccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          755 QLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       755 ~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                      ...... ...++.+|++||+..+..++.++||||+||++|||+||+.||.+.....      .+..+.............
T Consensus       177 ~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~~  250 (350)
T d1koaa2         177 DPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE------TLRNVKSCDWNMDDSAFS  250 (350)
T ss_dssp             CTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHTCCCSCCGGGG
T ss_pred             ccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCCCCCccccc
Confidence            433222 2336677899999988889999999999999999999999987443211      111111111111111122


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...+++.+++.+||+.||++|||++|++++
T Consensus       251 ~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         251 GISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             GCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            334567899999999999999999999986

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-46  Score=387.65  Aligned_cols=237  Identities=18%  Similarity=0.162  Sum_probs=193.5

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||+||+|.. .+|+.||||++....    ...+.+.+|++++++++|||||++++++.+++..|+|||||+
T Consensus        12 i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~   91 (288)
T d1uu3a_          12 FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAK   91 (288)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCT
T ss_pred             EEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccC
Confidence            889999999999999985 689999999997532    235678999999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC----C
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG----S  760 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~----~  760 (872)
                      +|+|.+++..  ..++.+...++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+|+.......    .
T Consensus        92 gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~  168 (288)
T d1uu3a_          92 NGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARAN  168 (288)
T ss_dssp             TEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC---------
T ss_pred             CCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccceecccCCcccccc
Confidence            9999998875  568888999999999999999999   999999999999999999999999999986542211    1


Q ss_pred             CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          761 FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ...++..|++||++.+..++.++||||+||++|||+||+.||.+.....      ....+.... ...++   ....++.
T Consensus       169 ~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~  238 (288)
T d1uu3a_         169 SFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYL------IFQKIIKLE-YDFPE---KFFPKAR  238 (288)
T ss_dssp             -CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHTTC-CCCCT---TCCHHHH
T ss_pred             cccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHH------HHHHHHcCC-CCCCc---cCCHHHH
Confidence            2236677899999988889999999999999999999999997543211      111111111 11111   1234677


Q ss_pred             HHHHHcccCCCCCCCCHHHHH
Q 002875          841 DVALLCTRSTPSDRPSMEEAL  861 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt~~~v~  861 (872)
                      +++.+||+.||++|||++|++
T Consensus       239 ~li~~~L~~dP~~R~t~~e~~  259 (288)
T d1uu3a_         239 DLVEKLLVLDATKRLGCEEME  259 (288)
T ss_dssp             HHHHTTSCSSGGGSTTSGGGT
T ss_pred             HHHHHHccCCHhHCcCHHHHc
Confidence            899999999999999999864

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.2e-46  Score=391.11  Aligned_cols=242  Identities=20%  Similarity=0.221  Sum_probs=193.3

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      +.|+  ..+.||+|+||.||+|+. .+|+.||||++.....    ..+.+.+|+++|++++|||||+++++|.+++..|+
T Consensus        15 ~~y~--~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~i   92 (309)
T d1u5ra_          15 KLFS--DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL   92 (309)
T ss_dssp             HHEE--EEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             HhcE--eeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEE
Confidence            3455  788999999999999984 6899999999975432    24568899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC
Q 002875          681 LYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD  758 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~  758 (872)
                      |||||++|++..++..  ..++.+...++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++..... 
T Consensus        93 v~E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~-  168 (309)
T d1u5ra_          93 VMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-  168 (309)
T ss_dssp             EEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-
T ss_pred             EEEecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCCC-
Confidence            9999999999876643  468999999999999999999999   9999999999999999999999999999764332 


Q ss_pred             CCCcccccccCchhhhcc---cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc-CCCCchHH
Q 002875          759 GSFPAKIAWTESGEFYNA---MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV-GSSSSLQD  834 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~~~---~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  834 (872)
                       ....++..|++||++.+   ..++.++|||||||++|||+||+.||.+.....      .+..+...... ....   .
T Consensus       169 -~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~------~~~~i~~~~~~~~~~~---~  238 (309)
T d1u5ra_         169 -NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS------ALYHIAQNESPALQSG---H  238 (309)
T ss_dssp             -CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHHSCCCCCSCT---T
T ss_pred             -CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHH------HHHHHHhCCCCCCCCC---C
Confidence             22346667888888753   357889999999999999999999987543211      01111111100 0111   1


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+.+.+++.+||+.||++|||++|++++
T Consensus       239 ~s~~~~~li~~~L~~dP~~Rpt~~ell~H  267 (309)
T d1u5ra_         239 WSEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (309)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             CCHHHHHHHHHHCcCChhHCcCHHHHHhC
Confidence            23467789999999999999999999864

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.2e-45  Score=395.89  Aligned_cols=250  Identities=18%  Similarity=0.192  Sum_probs=200.7

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc-hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEE
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA-TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~l  680 (872)
                      .+.+.|.  ..+.||+|+||.||+|.. .+|+.||||+++... ...+.+.+|+++|++++|||||++++++.+++..|+
T Consensus        26 ~~~d~Y~--i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~i  103 (352)
T d1koba_          26 SVYDYYD--ILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVL  103 (352)
T ss_dssp             CGGGTEE--EEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEE
T ss_pred             CcccceE--EEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            3445555  889999999999999985 689999999997643 345678899999999999999999999999999999


Q ss_pred             EEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC--CCCCeeEcccccccccc
Q 002875          681 LYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD--ENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~--~~~~~ki~dfg~~~~~~  755 (872)
                      |||||++|+|.+++..   ..++.+...|+.||+.||+|||+.   +|+||||||+|||++  .++.+||+|||+|+...
T Consensus       104 vmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~  180 (352)
T d1koba_         104 ILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLN  180 (352)
T ss_dssp             EEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred             EEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeecccceecC
Confidence            9999999999998765   357888999999999999999999   999999999999998  57899999999998654


Q ss_pred             ccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          756 LADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       756 ~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                      ..... ...++.+|++||+..+..++.++||||+||++|||+||+.||.+.....      .+..+..............
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~~~  254 (352)
T d1koba_         181 PDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE------TLQNVKRCDWEFDEDAFSS  254 (352)
T ss_dssp             TTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH------HHHHHHHCCCCCCSSTTTT
T ss_pred             CCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCCCCCcccccC
Confidence            43222 2235667888999988889999999999999999999999997543211      1111111110101111122


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ...++.+++.+||+.||++|||++|++++
T Consensus       255 ~s~~~~~li~~~L~~dp~~R~s~~eil~H  283 (352)
T d1koba_         255 VSPEAKDFIKNLLQKEPRKRLTVHDALEH  283 (352)
T ss_dssp             SCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            34567899999999999999999999875

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-45  Score=384.63  Aligned_cols=255  Identities=20%  Similarity=0.225  Sum_probs=192.5

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCC----eeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH----QAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lv~ey~~~  687 (872)
                      ..+.||+|+||.||+|+. +|+.||||+++...........|+..+++++|||||+++|+|.+++    .+|+|||||++
T Consensus         7 l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~   85 (303)
T d1vjya_           7 LQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEH   85 (303)
T ss_dssp             EEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred             EEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccC
Confidence            567899999999999986 7999999999765444444455666777899999999999998653    68999999999


Q ss_pred             CChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhC-----CCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--
Q 002875          688 GNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHD-----CYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--  759 (872)
Q Consensus       688 g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~-----~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--  759 (872)
                      |+|.+++++ ..+|.++..++.|+|.||+|+|+.     ++++|+||||||+|||+++++.+||+|||+++.......  
T Consensus        86 g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~  165 (303)
T d1vjya_          86 GSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTI  165 (303)
T ss_dssp             CBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEE
T ss_pred             CCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcce
Confidence            999999986 568999999999999999999973     235999999999999999999999999999876543221  


Q ss_pred             ----CCcccccccCchhhhccc------CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc---------cccc-c
Q 002875          760 ----SFPAKIAWTESGEFYNAM------KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID---------GLLG-E  819 (872)
Q Consensus       760 ----~~~~~~~~~~~~e~~~~~------~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~---------~~~~-~  819 (872)
                          ....++..|++||+....      .++.++|||||||++|||+||..|+........ +..         .... .
T Consensus       166 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  244 (303)
T d1vjya_         166 DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL-PYYDLVPSDPSVEEMRKV  244 (303)
T ss_dssp             CC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCC-TTTTTSCSSCCHHHHHHH
T ss_pred             eccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCccccccc-chhhcccccchHHHHHHH
Confidence                122356678888887543      356789999999999999999877653221110 000         0000 0


Q ss_pred             cccccccC-CCC--chHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          820 MYNENEVG-SSS--SLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       820 ~~~~~~~~-~~~--~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .......+ .+.  ...+....+.+++.+||+.||++||||.||+++|+.+.
T Consensus       245 ~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~  296 (303)
T d1vjya_         245 VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS  296 (303)
T ss_dssp             HTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence            11111000 011  12345567889999999999999999999999998764

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=391.33  Aligned_cols=250  Identities=17%  Similarity=0.199  Sum_probs=199.7

Q ss_pred             hHHhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          603 DVLRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       603 ~~~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      |+.+.|.  ..+.||+|+||+||+|.. .+|+.||||.++........+.+|+++|++++|||||++++++++++..|+|
T Consensus         2 ~~~~rY~--i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lv   79 (321)
T d1tkia_           2 ELYEKYM--IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             CCTTTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCccceE--EEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence            3445555  889999999999999985 5799999999987766667788999999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCC--CCeeEccccccccccc
Q 002875          682 YDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDEN--MEPHLAEFGFKYLTQL  756 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~--~~~ki~dfg~~~~~~~  756 (872)
                      ||||++|+|.+++..   ..++.+...|+.||+.||+|||+.   +|+||||||+|||++.+  ..+||+|||+++....
T Consensus        80 mE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~  156 (321)
T d1tkia_          80 FEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP  156 (321)
T ss_dssp             ECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred             EecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhcccc
Confidence            999999999999975   347888899999999999999999   99999999999999854  5799999999876543


Q ss_pred             cCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          757 ADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       757 ~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      ... ....++++|.+||...+..++.++||||+||++|||+||..||.......      .+..+.........+.....
T Consensus       157 ~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~  230 (321)
T d1tkia_         157 GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ------IIENIMNAEYTFDEEAFKEI  230 (321)
T ss_dssp             TCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHTCCCCCHHHHTTS
T ss_pred             CCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHH------HHHHHHhCCCCCChhhccCC
Confidence            221 12234566778888888888999999999999999999999987543211      11111111111001111123


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..++.+++.+||+.||++|||++|++++
T Consensus       231 s~~~~~li~~~L~~dp~~R~s~~eil~h  258 (321)
T d1tkia_         231 SIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            4567899999999999999999999874

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-45  Score=383.44  Aligned_cols=245  Identities=20%  Similarity=0.236  Sum_probs=192.6

Q ss_pred             hhhccCCCCCceeeeecCC----CcEEEEEEeec--cchhHHHHHHHHHHhhccCCCCceeEEEEEec-CCeeEEEEccc
Q 002875          613 CEEAARPQSAAGCKAVLPT----GITVSVKKIEW--GATRIKIVSEFITRIGTVRHKNLIRLLGFCYN-RHQAYLLYDYL  685 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~----g~~vavK~~~~--~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-~~~~~lv~ey~  685 (872)
                      .++||+|+||+||+|+..+    +..||||+++.  .....+.+.+|+++|++++|||||+++|+|.+ ++..++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            5689999999999998633    23699999974  33345779999999999999999999999875 56899999999


Q ss_pred             CCCChHHHhhCC---CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          686 PNGNLSEKIRTK---RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       686 ~~g~L~~~l~~~---~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      ++|+|.+++...   .++..+..++.|+|+||.|+|+.   +|+||||||+|||+++++.+||+|||+++........  
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~  188 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  188 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhccccccccc
Confidence            999999998763   46788899999999999999999   9999999999999999999999999999764332211  


Q ss_pred             ----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHH
Q 002875          761 ----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEI  836 (872)
Q Consensus       761 ----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (872)
                          ...++..|.+||......++.++|||||||++|||+||+.||..........     ..+........++.   ..
T Consensus       189 ~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~-----~~i~~g~~~~~p~~---~~  260 (311)
T d1r0pa_         189 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT-----VYLLQGRRLLQPEY---CP  260 (311)
T ss_dssp             TCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CH-----HHHHTTCCCCCCTT---CC
T ss_pred             eecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHH-----HHHHcCCCCCCccc---Cc
Confidence                1224555778888888889999999999999999999999887554322211     11111111111221   22


Q ss_pred             HHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          837 KLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       837 ~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      .++.+++.+||+.||++||||+||+++|+.+.
T Consensus       261 ~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~  292 (311)
T d1r0pa_         261 DPLYEVMLKCWHPKAEMRPSFSELVSRISAIF  292 (311)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            45778999999999999999999999998764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-45  Score=385.82  Aligned_cols=246  Identities=23%  Similarity=0.301  Sum_probs=193.5

Q ss_pred             hhhhccCCCCCceeeeecC-CCc--EEEEEEeecc--chhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP-TGI--TVSVKKIEWG--ATRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~-~g~--~vavK~~~~~--~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|+.. +|.  .||||+++..  ....+.+.+|+++|+++ +|||||+++|+|.+.+..|+|||||
T Consensus        14 ~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~   93 (309)
T d1fvra_          14 FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA   93 (309)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             EEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEec
Confidence            6788999999999999864 454  5788988643  22456789999999998 7999999999999999999999999


Q ss_pred             CCCChHHHhhC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcc
Q 002875          686 PNGNLSEKIRT------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAE  747 (872)
Q Consensus       686 ~~g~L~~~l~~------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~d  747 (872)
                      ++|+|.++++.                  ..++.++..++.|||+||.|+|+.   +|+||||||+|||++.++.+||+|
T Consensus        94 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~~~~kl~D  170 (309)
T d1fvra_          94 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIAD  170 (309)
T ss_dssp             TTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECC
T ss_pred             CCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEcCCCceEEcc
Confidence            99999999964                  358889999999999999999999   999999999999999999999999


Q ss_pred             ccccccccccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccccccccccc
Q 002875          748 FGFKYLTQLADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEV  826 (872)
Q Consensus       748 fg~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~  826 (872)
                      ||+++........ ...++..|.+||......++.++|||||||++|||+||+.|++.+.....     ....+......
T Consensus       171 fG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~-----~~~~i~~~~~~  245 (309)
T d1fvra_         171 FGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE-----LYEKLPQGYRL  245 (309)
T ss_dssp             TTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-----HHHHGGGTCCC
T ss_pred             ccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHH-----HHHHHHhcCCC
Confidence            9999765433322 22345557778888888899999999999999999998876554432211     11111111111


Q ss_pred             CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          827 GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       827 ~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      ..+.   ....++.+++.+||+.||++||||+||+++|+++.
T Consensus       246 ~~~~---~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~  284 (309)
T d1fvra_         246 EKPL---NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  284 (309)
T ss_dssp             CCCT---TBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCc---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            1111   22346778999999999999999999999998764

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-44  Score=376.22  Aligned_cols=244  Identities=16%  Similarity=0.188  Sum_probs=185.0

Q ss_pred             hhhhccCCCCCceeeeecC----CCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVLP----TGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~----~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||.||+|+..    .+..||||.++...  ...+.+.+|++++++++|||||+++|+|. ++..|+|||||
T Consensus        11 l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~iv~E~~   89 (273)
T d1mp8a_          11 LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELC   89 (273)
T ss_dssp             EEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             EEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEEEEEec
Confidence            7789999999999999853    34579999986532  33567899999999999999999999996 46789999999


Q ss_pred             CCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC---
Q 002875          686 PNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       686 ~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      ++|+|.+++..   ..++.++..++.||++||+|||+.   +|+||||||+||++++++.+||+|||+++.......   
T Consensus        90 ~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~  166 (273)
T d1mp8a_          90 TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA  166 (273)
T ss_dssp             TTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC---------------
T ss_pred             cCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhheeccCCcceec
Confidence            99999998754   358899999999999999999999   999999999999999999999999999976543221   


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKL  838 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (872)
                      ....++.+|++||......++.++|||||||++|||+| |..||.+... ..     ....+......+.++   ....+
T Consensus       167 ~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~-~~-----~~~~i~~~~~~~~~~---~~~~~  237 (273)
T d1mp8a_         167 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN-ND-----VIGRIENGERLPMPP---NCPPT  237 (273)
T ss_dssp             ----CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG-GG-----HHHHHHTTCCCCCCT---TCCHH
T ss_pred             cceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCH-HH-----HHHHHHcCCCCCCCC---CCCHH
Confidence            12235567888999888889999999999999999998 5555543321 11     111111111111122   22346


Q ss_pred             HHHHHHHcccCCCCCCCCHHHHHHHHcccC
Q 002875          839 VLDVALLCTRSTPSDRPSMEEALKLLSGLK  868 (872)
Q Consensus       839 ~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~  868 (872)
                      +.+++.+||+.||++||||+|++++|+.+.
T Consensus       238 ~~~li~~cl~~dp~~Rps~~ei~~~L~~i~  267 (273)
T d1mp8a_         238 LYSLMTKCWAYDPSRRPRFTELKAQLSTIL  267 (273)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            778999999999999999999999998764

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-44  Score=380.72  Aligned_cols=246  Identities=22%  Similarity=0.238  Sum_probs=184.0

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecC-CeeEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNR-HQAYLL  681 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~-~~~~lv  681 (872)
                      ..+.||+|+||.||+|+.      .+++.||||+++...  ...+.+.+|+..+.++ +|||||++++++.++ +..++|
T Consensus        17 ~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv   96 (299)
T d1ywna1          17 LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVI   96 (299)
T ss_dssp             EEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEE
T ss_pred             EeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEE
Confidence            788999999999999974      356789999997533  3355667777777776 689999999998764 568999


Q ss_pred             EcccCCCChHHHhhC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCe
Q 002875          682 YDYLPNGNLSEKIRT------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEP  743 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~  743 (872)
                      ||||++|+|.++++.                  ..++.++..++.||++||+|||+.   +|+||||||+|||+++++.+
T Consensus        97 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NILl~~~~~~  173 (299)
T d1ywna1          97 VEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVV  173 (299)
T ss_dssp             EECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCE
T ss_pred             EEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCCcCCccceeECCCCcE
Confidence            999999999999863                  246888999999999999999999   99999999999999999999


Q ss_pred             eEccccccccccccCC----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccc
Q 002875          744 HLAEFGFKYLTQLADG----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGE  819 (872)
Q Consensus       744 ki~dfg~~~~~~~~~~----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~  819 (872)
                      ||+|||+|+.......    ....++..|++||...+..++.++|||||||++|||+||+.|++.+....... ...+..
T Consensus       174 Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~-~~~~~~  252 (299)
T d1ywna1         174 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF-CRRLKE  252 (299)
T ss_dssp             EECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHH-HHHHHH
T ss_pred             EEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHH-HHHHhc
Confidence            9999999976433221    12235667888999888889999999999999999999876554333221111 111111


Q ss_pred             cccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          820 MYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ...   ...++   ...+++.+++.+||+.||++||||+|++++|+.+
T Consensus       253 ~~~---~~~~~---~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~i  294 (299)
T d1ywna1         253 GTR---MRAPD---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  294 (299)
T ss_dssp             TCC---CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCC---CCCCc---cCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence            111   11111   1234678899999999999999999999999876

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.7e-44  Score=374.18  Aligned_cols=244  Identities=21%  Similarity=0.224  Sum_probs=193.5

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----------hHHHHHHHHHHhhccC-CCCceeEEEEEecCCee
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----------RIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQA  678 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----------~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~  678 (872)
                      +..+.||+|+||+||+|+. .+|+.||||+++....          ..+.+.+|+.++++++ |||||++++++.+++..
T Consensus         6 ~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~   85 (277)
T d1phka_           6 EPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNTFF   85 (277)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             EEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCcce
Confidence            3889999999999999985 6899999999975321          1345788999999997 99999999999999999


Q ss_pred             EEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccc
Q 002875          679 YLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       679 ~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~  756 (872)
                      |||||||++|||.++++.  ..++.+...++.||++||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        86 ~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  162 (277)
T d1phka_          86 FLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP  162 (277)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             EEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEEccchheeEccC
Confidence            999999999999999964  568899999999999999999999   999999999999999999999999999976543


Q ss_pred             cCC-CCcccccccCchhhhcc------cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCC
Q 002875          757 ADG-SFPAKIAWTESGEFYNA------MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       757 ~~~-~~~~~~~~~~~~e~~~~------~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      ... ....++..+.+||+...      ..++.++||||+||++|||+||+.||.+.....      ....+.........
T Consensus       163 ~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~------~~~~i~~~~~~~~~  236 (277)
T d1phka_         163 GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML------MLRMIMSGNYQFGS  236 (277)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHTCCCCCT
T ss_pred             CCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHH------HHHHHHhCCCCCCC
Confidence            222 22234555777777642      346788999999999999999999997543211      01111111111111


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      +......+++.+++.+||+.||++|||++|++++
T Consensus       237 ~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         237 PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             cccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            2222344578899999999999999999999875

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-44  Score=382.03  Aligned_cols=239  Identities=12%  Similarity=0.067  Sum_probs=195.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||.||+|+. .+|+.||||+++...    ...+.+.+|+.+|++++|||||++++++++++..|+|||||+
T Consensus         9 ~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~   88 (337)
T d1o6la_           9 YLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYAN   88 (337)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             EEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccC
Confidence            889999999999999985 789999999997532    235678889999999999999999999999999999999999


Q ss_pred             CCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCc
Q 002875          687 NGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFP  762 (872)
Q Consensus       687 ~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~  762 (872)
                      +|+|.+++..  ..+....+.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.......  ...
T Consensus        89 gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~  165 (337)
T d1o6la_          89 GGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF  165 (337)
T ss_dssp             TCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCC
T ss_pred             CCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeecccccccccCCcccccc
Confidence            9999999976  456777888999999999999999   999999999999999999999999999976433222  223


Q ss_pred             ccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHH
Q 002875          763 AKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDV  842 (872)
Q Consensus       763 ~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  842 (872)
                      .++++|++||+..+..++.++||||+||++|||+||+.||.+.....      ....+.... ...+.   ....++.++
T Consensus       166 ~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~dl  235 (337)
T d1o6la_         166 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER------LFELILMEE-IRFPR---TLSPEAKSL  235 (337)
T ss_dssp             EECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TSCHHHHHH
T ss_pred             eeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHH------HHHHHhcCC-CCCCc---cCCHHHHHH
Confidence            46778999999998899999999999999999999999987543211      111111111 11111   123457789


Q ss_pred             HHHcccCCCCCCCC-----HHHHHHH
Q 002875          843 ALLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       843 ~~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      +.+||+.||++||+     ++|+++|
T Consensus       236 i~~~L~~dP~~R~~~~~~~~~eil~H  261 (337)
T d1o6la_         236 LAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             HHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             HHhhccCCchhhcccccccHHHHHcC
Confidence            99999999999995     8888764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-44  Score=383.53  Aligned_cols=249  Identities=15%  Similarity=0.192  Sum_probs=193.0

Q ss_pred             HHhhcCcchhh-hccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhcc-CCCCceeEEEEEec----CC
Q 002875          604 VLRSFNSTECE-EAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTV-RHKNLIRLLGFCYN----RH  676 (872)
Q Consensus       604 ~~~~~~~~~~~-~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~----~~  676 (872)
                      +.+.|.  ... .||+|+||.||+|.. .+|+.||||+++..    +.+.+|++++.++ +|||||+++++|++    ..
T Consensus         9 i~~~y~--i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~   82 (335)
T d2ozaa1           9 IIDDYK--VTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHIVRIVDVYENLYAGRK   82 (335)
T ss_dssp             GGGTEE--EEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             cccCEE--EeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCC
Confidence            445554  554 599999999999985 78999999999743    4567788887654 89999999999875    46


Q ss_pred             eeEEEEcccCCCChHHHhhCC----CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC---CCCeeEcccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRTK----RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE---NMEPHLAEFG  749 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~~----~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~---~~~~ki~dfg  749 (872)
                      ..|+|||||+||+|.+++...    .++.+...|+.|++.||+|||+.   +|+||||||+|||+++   ++.+||+|||
T Consensus        83 ~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~DFG  159 (335)
T d2ozaa1          83 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFG  159 (335)
T ss_dssp             EEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECCCT
T ss_pred             EEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc---CCccccccccccccccccccccccccccc
Confidence            789999999999999999763    47888999999999999999999   9999999999999985   4579999999


Q ss_pred             ccccccccCC-CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCC
Q 002875          750 FKYLTQLADG-SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       750 ~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      +++....... ....++++|++||+..+..++.++||||+||++|||+||+.||.+........  .....+........
T Consensus       160 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~--~~~~~i~~~~~~~~  237 (335)
T d2ozaa1         160 FAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP--GMKTRIRMGQYEFP  237 (335)
T ss_dssp             TCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC----------CCCSCSSSCC
T ss_pred             eeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHH--HHHHHHhcCCCCCC
Confidence            9976543322 23346778889999988889999999999999999999999997543221110  01111111111111


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .+......+++.+++.+||+.||++|||++|++++
T Consensus       238 ~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         238 NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             TTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            22234455678899999999999999999999875

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=375.43  Aligned_cols=244  Identities=19%  Similarity=0.239  Sum_probs=183.7

Q ss_pred             hhhhccCCCCCceeeeec--CCC--cEEEEEEeecc----chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL--PTG--ITVSVKKIEWG----ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--~~g--~~vavK~~~~~----~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|+.  .++  ..||||+++..    ....+.+.+|+.+|++++|||||+++|+|.+ +..++|||
T Consensus        12 ~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~lv~e   90 (273)
T d1u46a_          12 LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMKMVTE   90 (273)
T ss_dssp             EEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             EEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchheeee
Confidence            788999999999999985  333  47999998753    2235678999999999999999999999976 46789999


Q ss_pred             ccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC-
Q 002875          684 YLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG-  759 (872)
Q Consensus       684 y~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~-  759 (872)
                      ||++|++.+++..   ..++..+..++.|+|+||+|||++   +|+||||||+||+++.++.+||+|||+++....... 
T Consensus        91 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~  167 (273)
T d1u46a_          91 LAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH  167 (273)
T ss_dssp             CCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE
T ss_pred             eecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccchhhhhcccCCCc
Confidence            9999999988753   468999999999999999999998   999999999999999999999999999986533221 


Q ss_pred             ----CCcccccccCchhhhcccCCcccccchhHHHHHHHHHc-CCCCCCCCCCCCCccccccccccccccccCCCCchHH
Q 002875          760 ----SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILT-NGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQD  834 (872)
Q Consensus       760 ----~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (872)
                          ....+..++.+||......++.++|||||||++|||+| |+.||.+.....      ....+......  .+....
T Consensus       168 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~------~~~~i~~~~~~--~~~~~~  239 (273)
T d1u46a_         168 YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ------ILHKIDKEGER--LPRPED  239 (273)
T ss_dssp             EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH------HHHHHHTSCCC--CCCCTT
T ss_pred             ceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHH------HHHHHHhCCCC--CCCccc
Confidence                11224455778898888889999999999999999999 677775432111      11111111101  011112


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          835 EIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       835 ~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+..+.+++.+||+.||++||||+||.+.|++.
T Consensus       240 ~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         240 CPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            234577899999999999999999999998764

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.7e-44  Score=385.18  Aligned_cols=242  Identities=11%  Similarity=0.050  Sum_probs=190.9

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch----hHHHHH---HHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT----RIKIVS---EFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~----~~~~~~---~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|+. .+|+.||||++.....    ....+.   +|+++++.++|||||++++++.+++..|+|||
T Consensus         8 i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE   87 (364)
T d1omwa3           8 VHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILD   87 (364)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             eeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEEE
Confidence            788999999999999985 6799999999964321    122333   34677778899999999999999999999999


Q ss_pred             ccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCC
Q 002875          684 YLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSF  761 (872)
Q Consensus       684 y~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~  761 (872)
                      ||++|+|.+++.+  ..++.+...++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.........
T Consensus        88 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~~  164 (364)
T d1omwa3          88 LMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHA  164 (364)
T ss_dssp             CCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCEECSSSCCCS
T ss_pred             ecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeeceeeecCCCcccc
Confidence            9999999999965  457788899999999999999999   99999999999999999999999999998665444444


Q ss_pred             cccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHH
Q 002875          762 PAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVL  840 (872)
Q Consensus       762 ~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (872)
                      ..++..|++||++. +..++.++||||+||++|||+||+.||..........   ......... ...++   ...+++.
T Consensus       165 ~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~---~~~~~~~~~-~~~~~---~~s~~~~  237 (364)
T d1omwa3         165 SVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE---IDRMTLTMA-VELPD---SFSPELR  237 (364)
T ss_dssp             CCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHH---HHHHSSSCC-CCCCS---SSCHHHH
T ss_pred             cccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHH---HHHhcccCC-CCCCC---CCCHHHH
Confidence            45677788888875 4568999999999999999999999997543221100   011111111 11111   1234577


Q ss_pred             HHHHHcccCCCCCCCC-----HHHHHHH
Q 002875          841 DVALLCTRSTPSDRPS-----MEEALKL  863 (872)
Q Consensus       841 ~l~~~cl~~dp~~Rpt-----~~~v~~~  863 (872)
                      +++.+||+.||++|||     ++|+++|
T Consensus       238 ~li~~~L~~dP~~R~t~~~~~a~eil~H  265 (364)
T d1omwa3         238 SLLEGLLQRDVNRRLGCLGRGAQEVKES  265 (364)
T ss_dssp             HHHHHHTCSSTTTSTTTSSSTHHHHHTS
T ss_pred             HHHHHHcccCHHHhCCCcccCHHHHHcC
Confidence            8999999999999999     6888754

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-44  Score=378.21  Aligned_cols=238  Identities=17%  Similarity=0.154  Sum_probs=195.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLP  686 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~  686 (872)
                      ..+.||+|+||+||+|+. .+|+.||||+++...    ...+.+.+|+.++++++|||||++++++.+++..|+|||||+
T Consensus         8 i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~   87 (316)
T d1fota_           8 ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIE   87 (316)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             EEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecC
Confidence            889999999999999995 679999999997532    235678899999999999999999999999999999999999


Q ss_pred             CCChHHHhhCC--CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCCCccc
Q 002875          687 NGNLSEKIRTK--RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGSFPAK  764 (872)
Q Consensus       687 ~g~L~~~l~~~--~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~~~~~  764 (872)
                      ||+|.+++...  .+......++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+....... ...+
T Consensus        88 gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~-~~~G  163 (316)
T d1fota_          88 GGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY-TLCG  163 (316)
T ss_dssp             SCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBC-CCCS
T ss_pred             CccccccccccccccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccceEeccccc-cccC
Confidence            99999998753  46777788999999999999999   999999999999999999999999999987654332 2346


Q ss_pred             ccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHHHHH
Q 002875          765 IAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLDVAL  844 (872)
Q Consensus       765 ~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  844 (872)
                      +..|++||++.+..++.++||||+||++|||+||+.||.+.....      ....+.... ...++   ....++.+++.
T Consensus       164 t~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~~li~  233 (316)
T d1fota_         164 TPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK------TYEKILNAE-LRFPP---FFNEDVKDLLS  233 (316)
T ss_dssp             CTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH------HHHHHHHCC-CCCCT---TSCHHHHHHHH
T ss_pred             cccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHH------HHHHHHcCC-CCCCC---CCCHHHHHHHH
Confidence            667889999988889999999999999999999999997543211      111111111 11111   12245778899


Q ss_pred             HcccCCCCCCC-----CHHHHHHH
Q 002875          845 LCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       845 ~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +||+.||++||     |++|+++|
T Consensus       234 ~~L~~dp~~R~~~~r~t~~~il~H  257 (316)
T d1fota_         234 RLITRDLSQRLGNLQNGTEDVKNH  257 (316)
T ss_dssp             HHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             HHhhhCHHhccccchhhHHHHHcC
Confidence            99999999996     89999865

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-43  Score=375.04  Aligned_cols=247  Identities=17%  Similarity=0.229  Sum_probs=196.5

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEc
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~e  683 (872)
                      ..+.||+|+||.||+|+.      .+++.||||+++...  .....+.+|++++++++|||||+++|+|..++..++|||
T Consensus        24 l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e  103 (308)
T d1p4oa_          24 MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIME  103 (308)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             EeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEe
Confidence            778899999999999975      346789999997533  334568899999999999999999999999999999999


Q ss_pred             ccCCCChHHHhhC------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          684 YLPNGNLSEKIRT------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       684 y~~~g~L~~~l~~------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                      ||++|+|.+++..            ..++.++..++.|+|+||+|||+.   +|+||||||+|||+|+++.+||+|||++
T Consensus       104 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~~~~~Kl~DFGla  180 (308)
T d1p4oa_         104 LMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMT  180 (308)
T ss_dssp             CCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECCTTCC
T ss_pred             ecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeecCCceEEEeecccc
Confidence            9999999998863            247888999999999999999999   9999999999999999999999999999


Q ss_pred             ccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccC
Q 002875          752 YLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVG  827 (872)
Q Consensus       752 ~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (872)
                      +........    ...++..|.+||......++.++|||||||++|||+||+.|++.+.....     ....+.+.....
T Consensus       181 ~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~-----~~~~i~~~~~~~  255 (308)
T d1p4oa_         181 RDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ-----VLRFVMEGGLLD  255 (308)
T ss_dssp             CGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH-----HHHHHHTTCCCC
T ss_pred             eeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHH-----HHHHHHhCCCCC
Confidence            765432221    11244557778888888889999999999999999999766554332211     111122222111


Q ss_pred             CCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHcccCC
Q 002875          828 SSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGLKP  869 (872)
Q Consensus       828 ~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~~~  869 (872)
                      .++   .....+.+++.+||+.||++||||+||+++|+....
T Consensus       256 ~p~---~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         256 KPD---NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             CCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             Ccc---cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            122   223468889999999999999999999999987643

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-44  Score=377.47  Aligned_cols=253  Identities=16%  Similarity=0.137  Sum_probs=195.7

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCC----
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH----  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----  676 (872)
                      +.|.  ..+.||+|+||.||+|+. .+|+.||||+++...    ...+.+.+|++++++++|||||++++++...+    
T Consensus         7 drY~--i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~   84 (277)
T d1o6ya_           7 DRYE--LGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP   84 (277)
T ss_dssp             TTEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSE
T ss_pred             ceeE--EeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCc
Confidence            4455  889999999999999985 689999999997532    23456889999999999999999999997643    


Q ss_pred             eeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          677 QAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       677 ~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ..|+|||||++|+|.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++.++..+++|||.++..
T Consensus        85 ~~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~  161 (277)
T d1o6ya_          85 LPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI  161 (277)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTCEEC
T ss_pred             eEEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhhhhhhh
Confidence            48999999999999998865  568899999999999999999999   9999999999999999999999999987654


Q ss_pred             cccC-----CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCC
Q 002875          755 QLAD-----GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSS  829 (872)
Q Consensus       755 ~~~~-----~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (872)
                      ....     .....++..|++||.+.+..++.++||||+||++|||+||+.||.+.....      .........+....
T Consensus       162 ~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~------~~~~~~~~~~~~~~  235 (277)
T d1o6ya_         162 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS------VAYQHVREDPIPPS  235 (277)
T ss_dssp             C----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHCCCCCGG
T ss_pred             ccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHH------HHHHHHhcCCCCCc
Confidence            3221     112235677889999888889999999999999999999999987543211      11111111111000


Q ss_pred             CchHHHHHHHHHHHHHcccCCCCCCC-CHHHHHHHHcccCC
Q 002875          830 SSLQDEIKLVLDVALLCTRSTPSDRP-SMEEALKLLSGLKP  869 (872)
Q Consensus       830 ~~~~~~~~~~~~l~~~cl~~dp~~Rp-t~~~v~~~L~~~~~  869 (872)
                      ......+.++.+++.+||+.||++|| |++++.+.|.+++.
T Consensus       236 ~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~n  276 (277)
T d1o6ya_         236 ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  276 (277)
T ss_dssp             GTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHC
T ss_pred             hhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHhC
Confidence            11112335677899999999999999 89999999887653

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-44  Score=380.44  Aligned_cols=246  Identities=17%  Similarity=0.231  Sum_probs=189.3

Q ss_pred             cchhhhccCCCCCceeeeec-CCCc----EEEEEEeecc--chhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEE
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGI----TVSVKKIEWG--ATRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~----~vavK~~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      |...+.||+|+||.||+|.. .+|+    .||||+++..  ....+.+.+|++++++++|||||+++|+|.++ ..++||
T Consensus        11 y~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~v~   89 (317)
T d1xkka_          11 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLIT   89 (317)
T ss_dssp             EEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEEEE
T ss_pred             CEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeEEE
Confidence            34889999999999999985 4554    5888988643  23467889999999999999999999999875 567889


Q ss_pred             cccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          683 DYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       683 ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      ||+.+|+|.+++..   ..++..+..|+.|||+||+|||++   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        90 e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~  166 (317)
T d1xkka_          90 QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK  166 (317)
T ss_dssp             ECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC
T ss_pred             EeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeeccccceecccccc
Confidence            99999999998764   458889999999999999999999   999999999999999999999999999986543222


Q ss_pred             CC----cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          760 SF----PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       760 ~~----~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      ..    ..++..|++||...+..++.++|||||||++|||+|++.|++.+.....  ...   .+......+.++   ..
T Consensus       167 ~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~--~~~---~i~~~~~~~~p~---~~  238 (317)
T d1xkka_         167 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISS---ILEKGERLPQPP---IC  238 (317)
T ss_dssp             --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGG--HHH---HHHHTCCCCCCT---TB
T ss_pred             cccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHH--HHH---HHHcCCCCCCCc---cc
Confidence            11    1245567888988888899999999999999999995555443332211  111   111111111122   22


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..++.+++.+||+.||++||||+|++++|..+
T Consensus       239 ~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~  270 (317)
T d1xkka_         239 TIDVYMIMVKCWMIDADSRPKFRELIIEFSKM  270 (317)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCChhhCcCHHHHHHHHHHH
Confidence            34677899999999999999999999998765

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-44  Score=377.23  Aligned_cols=246  Identities=20%  Similarity=0.245  Sum_probs=196.6

Q ss_pred             hhhhccCCCCCceeeeec------CCCcEEEEEEeeccc--hhHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEEEE
Q 002875          612 ECEEAARPQSAAGCKAVL------PTGITVSVKKIEWGA--TRIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYLLY  682 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~------~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~lv~  682 (872)
                      ..+.||+|+||.||+|+.      .+++.||||+++...  .....+.+|+.+++++ +|||||+++|+|.+++..++||
T Consensus        27 l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvm  106 (311)
T d1t46a_          27 FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT  106 (311)
T ss_dssp             EEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             EeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEE
Confidence            678999999999999974      567899999997643  3455788999999998 6999999999999999999999


Q ss_pred             cccCCCChHHHhhC--------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          683 DYLPNGNLSEKIRT--------------------KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       683 ey~~~g~L~~~l~~--------------------~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      |||++|+|.++++.                    ..++..+..++.||++||+|||++   +||||||||+||+++.++.
T Consensus       107 E~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl~~~~~~  183 (311)
T d1t46a_         107 EYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRI  183 (311)
T ss_dssp             ECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETTTE
T ss_pred             EcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccccccccccccCc
Confidence            99999999999864                    246788899999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccc
Q 002875          743 PHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG  818 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~  818 (872)
                      +|++|||+++........    ...++..|.+||......++.++|||||||++|||+|++.|+.........     +.
T Consensus       184 ~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~-----~~  258 (311)
T d1t46a_         184 TKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK-----FY  258 (311)
T ss_dssp             EEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH-----HH
T ss_pred             ccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHH-----HH
Confidence            999999999865433221    223455677888888888999999999999999999977776654432211     11


Q ss_pred             ccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          819 EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .++........+  ......+.+++.+||+.||++||||+|++++|+++
T Consensus       259 ~~i~~~~~~~~~--~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~  305 (311)
T d1t46a_         259 KMIKEGFRMLSP--EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ  305 (311)
T ss_dssp             HHHHHTCCCCCC--TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHhcCCCCCCc--ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence            111111111011  11234678999999999999999999999999864

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-43  Score=372.63  Aligned_cols=245  Identities=22%  Similarity=0.263  Sum_probs=188.6

Q ss_pred             hhhhccCCCCCceeeeec--------CCCcEEEEEEeeccch--hHHHHHHHHHHhhcc-CCCCceeEEEEEecCCeeEE
Q 002875          612 ECEEAARPQSAAGCKAVL--------PTGITVSVKKIEWGAT--RIKIVSEFITRIGTV-RHKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~--------~~g~~vavK~~~~~~~--~~~~~~~e~~~l~~l-~H~niv~l~~~~~~~~~~~l  680 (872)
                      ..+.||+|+||.||+|+.        .++..||||+++....  ....+.+|+..+.++ +|||||+++|+|.+++..++
T Consensus        17 l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~   96 (299)
T d1fgka_          17 LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYV   96 (299)
T ss_dssp             EEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             EeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEE
Confidence            778999999999999974        2345899999976433  456778888888887 79999999999999999999


Q ss_pred             EEcccCCCChHHHhhCC------------------CCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCC
Q 002875          681 LYDYLPNGNLSEKIRTK------------------RDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENME  742 (872)
Q Consensus       681 v~ey~~~g~L~~~l~~~------------------~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~  742 (872)
                      |||||++|+|.++++..                  .++.+++.++.|++.||+|||+.   +||||||||+|||++.++.
T Consensus        97 v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp~NiLl~~~~~  173 (299)
T d1fgka_          97 IVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNV  173 (299)
T ss_dssp             EECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCC
T ss_pred             EEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeecccceeecCCCC
Confidence            99999999999999642                  57889999999999999999999   9999999999999999999


Q ss_pred             eeEccccccccccccCCC----CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccccccc
Q 002875          743 PHLAEFGFKYLTQLADGS----FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLG  818 (872)
Q Consensus       743 ~ki~dfg~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~  818 (872)
                      +||+|||+++........    ...++..|++||......++.++|||||||++|||+|++.|++.+.....     ...
T Consensus       174 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~-----~~~  248 (299)
T d1fgka_         174 MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-----LFK  248 (299)
T ss_dssp             EEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-----HHH
T ss_pred             eEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHH-----HHH
Confidence            999999999765443221    12345557788888888899999999999999999996554443322111     111


Q ss_pred             ccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          819 EMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      .+........+.   ....++.+++.+||+.||++||||+||++.|+++
T Consensus       249 ~i~~~~~~~~p~---~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i  294 (299)
T d1fgka_         249 LLKEGHRMDKPS---NCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  294 (299)
T ss_dssp             HHHTTCCCCCCS---SCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCc---cchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence            111111111111   1234577899999999999999999999999876

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-43  Score=374.86  Aligned_cols=249  Identities=22%  Similarity=0.207  Sum_probs=187.4

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccchh------HHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATR------IKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~------~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey  684 (872)
                      ..++||+|+||+||+|.. .+|+.||||+++.....      .+.+.+|+.++++++|||||++++++.+++..|+||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            457899999999999996 57999999999754321      34678999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--
Q 002875          685 LPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--  760 (872)
Q Consensus       685 ~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--  760 (872)
                      |++|++......  ..++.+...++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++........  
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~  158 (299)
T d1ua2a_          82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYT  158 (299)
T ss_dssp             CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCC
T ss_pred             hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCccccccCCCccccc
Confidence            999888777654  356778889999999999999999   9999999999999999999999999999765433222  


Q ss_pred             CcccccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC---------------Ccccccccccccccc
Q 002875          761 FPAKIAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ---------------NKPIDGLLGEMYNEN  824 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~---------------~~~~~~~~~~~~~~~  824 (872)
                      ...++.+|++||+.. ...++.++||||+||++|||+||..||.+.....               .+.............
T Consensus       159 ~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  238 (299)
T d1ua2a_         159 HQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFK  238 (299)
T ss_dssp             CSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCC
T ss_pred             ceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhc
Confidence            223566788888775 4467899999999999999999998886432110               000000000000000


Q ss_pred             ccCCCCc---hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSSS---LQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~~---~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+..+.   .....+++.+++.+||+.||++|||++|+++|
T Consensus       239 ~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~H  280 (299)
T d1ua2a_         239 SFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  280 (299)
T ss_dssp             CCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             cCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCC
Confidence            0000000   01223568899999999999999999999975

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-43  Score=376.61  Aligned_cols=241  Identities=13%  Similarity=0.105  Sum_probs=197.6

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLL  681 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv  681 (872)
                      .|.  ..+.||+|+||.||+|.. .+|+.||||++....    ...+.+.+|+.+|++++|||||++++++.+.+..++|
T Consensus        42 ~y~--i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          42 QFD--RIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GEE--EEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CeE--EEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccccc
Confidence            455  889999999999999985 689999999997532    2356788999999999999999999999999999999


Q ss_pred             EcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC
Q 002875          682 YDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG  759 (872)
Q Consensus       682 ~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~  759 (872)
                      |||+++|+|.+++..  ..++.+...|+.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++.......
T Consensus       120 ~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~  196 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW  196 (350)
T ss_dssp             EECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC
T ss_pred             cccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeecccccc
Confidence            999999999999865  568888899999999999999999   999999999999999999999999999987654332


Q ss_pred             CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHH
Q 002875          760 SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLV  839 (872)
Q Consensus       760 ~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (872)
                       ...++.+|++||++.+..++.++||||+||++|||+||+.||.+.....      ....+.... ...+.   ....++
T Consensus       197 -~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~  265 (350)
T d1rdqe_         197 -TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ------IYEKIVSGK-VRFPS---HFSSDL  265 (350)
T ss_dssp             -CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TCCHHH
T ss_pred             -cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHH------HHHHHhcCC-CCCCc---cCCHHH
Confidence             2346677899999988889999999999999999999999997543111      111111111 11111   223467


Q ss_pred             HHHHHHcccCCCCCCC-----CHHHHHHH
Q 002875          840 LDVALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       840 ~~l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      .+++.+||+.||++|+     |++|+++|
T Consensus       266 ~~li~~~L~~dP~kR~~~~r~t~~ell~H  294 (350)
T d1rdqe_         266 KDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             HHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             HHHHHHHhhhCHHhccccccccHHHHHcC
Confidence            7899999999999994     89999864

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-42  Score=364.81  Aligned_cols=254  Identities=18%  Similarity=0.195  Sum_probs=189.6

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.||+|+||+||+|+. .+|+.||||+++....   ..+.+.+|+++|++++|||||++++++.+++..|+|||||.+
T Consensus         6 ~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~   85 (298)
T d1gz8a_           6 KVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQ   85 (298)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred             eccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCC
Confidence            889999999999999985 7899999999965332   256788999999999999999999999999999999999986


Q ss_pred             CChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCc
Q 002875          688 GNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFP  762 (872)
Q Consensus       688 g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~  762 (872)
                      +.+......   ..++.+...++.|++.||+|||+.   +||||||||+|||++.++.+||+|||+++.......  ...
T Consensus        86 ~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~  162 (298)
T d1gz8a_          86 DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHE  162 (298)
T ss_dssp             EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCC
T ss_pred             chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceeccCCcccceee
Confidence            544433322   468899999999999999999999   999999999999999999999999999976543221  122


Q ss_pred             ccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCC---------------Ccccccccccccccccc
Q 002875          763 AKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ---------------NKPIDGLLGEMYNENEV  826 (872)
Q Consensus       763 ~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~---------------~~~~~~~~~~~~~~~~~  826 (872)
                      .++..|.+||.... ..++.++||||+||++|||+||+.||.+.....               .+.............+.
T Consensus       163 ~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (298)
T d1gz8a_         163 VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPK  242 (298)
T ss_dssp             BCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCC
T ss_pred             cccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhcccccccccccccccc
Confidence            35566777776554 446788999999999999999999987432110               00000000000000000


Q ss_pred             CCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH--HcccC
Q 002875          827 GSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGLK  868 (872)
Q Consensus       827 ~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~~  868 (872)
                      ......    ....+++.+++.+||+.||++|||++|++++  ++.+.
T Consensus       243 ~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~  290 (298)
T d1gz8a_         243 WARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVT  290 (298)
T ss_dssp             CCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCC
T ss_pred             ccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCC
Confidence            001111    1223567899999999999999999999987  66553

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-43  Score=373.20  Aligned_cols=238  Identities=18%  Similarity=0.172  Sum_probs=189.7

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc----hhHHHHHHHHHHhh-ccCCCCceeEEEEEecCCeeEEEEccc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA----TRIKIVSEFITRIG-TVRHKNLIRLLGFCYNRHQAYLLYDYL  685 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~----~~~~~~~~e~~~l~-~l~H~niv~l~~~~~~~~~~~lv~ey~  685 (872)
                      ..+.||+|+||+||+|+. .+|+.||||+++...    ...+.+..|+.++. .++|||||++++++.+++..|+|||||
T Consensus         6 i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~   85 (320)
T d1xjda_           6 LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYL   85 (320)
T ss_dssp             EEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             EeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeec
Confidence            789999999999999986 579999999997532    22344555666554 689999999999999999999999999


Q ss_pred             CCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CC
Q 002875          686 PNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SF  761 (872)
Q Consensus       686 ~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~  761 (872)
                      ++|+|.+++..  ..+..+...++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.......  ..
T Consensus        86 ~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~  162 (320)
T d1xjda_          86 NGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNT  162 (320)
T ss_dssp             TTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCC
T ss_pred             CCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhcccccccccc
Confidence            99999999975  457788899999999999999999   999999999999999999999999999975433222  22


Q ss_pred             cccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHHHHHHHH
Q 002875          762 PAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDEIKLVLD  841 (872)
Q Consensus       762 ~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (872)
                      ..++..|++||+..+..++.++||||+||++|||+||+.||.+.....      ....+.... ...+.   ....++.+
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~------~~~~i~~~~-~~~p~---~~s~~~~d  232 (320)
T d1xjda_         163 FCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE------LFHSIRMDN-PFYPR---WLEKEAKD  232 (320)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHCC-CCCCT---TSCHHHHH
T ss_pred             cCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHH------HHHHHHcCC-CCCCc---cCCHHHHH
Confidence            336677889999988899999999999999999999999997543211      111111111 11111   12345779


Q ss_pred             HHHHcccCCCCCCCCHH-HHHH
Q 002875          842 VALLCTRSTPSDRPSME-EALK  862 (872)
Q Consensus       842 l~~~cl~~dp~~Rpt~~-~v~~  862 (872)
                      ++.+||+.||++|||+. |+++
T Consensus       233 li~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         233 LLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             HHHHHSCSSGGGSBTTBSCGGG
T ss_pred             HHHHhcccCCCCCcCHHHHHHh
Confidence            99999999999999985 6653

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-43  Score=365.15  Aligned_cols=234  Identities=16%  Similarity=0.132  Sum_probs=187.7

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccch-------hHHHHHHHHHHhhccC--CCCceeEEEEEecCCeeEE
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGAT-------RIKIVSEFITRIGTVR--HKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~-------~~~~~~~e~~~l~~l~--H~niv~l~~~~~~~~~~~l  680 (872)
                      ...+.||+|+||.||+|+. .+|+.||||+++....       ....+.+|+.++++++  |||||++++++.+++..|+
T Consensus         7 ~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~l   86 (273)
T d1xwsa_           7 QVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVL   86 (273)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEE
T ss_pred             EEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEE
Confidence            3788999999999999985 6899999999975321       1234668999999987  8999999999999999999


Q ss_pred             EEcccCC-CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-CCCeeEccccccccccc
Q 002875          681 LYDYLPN-GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-NMEPHLAEFGFKYLTQL  756 (872)
Q Consensus       681 v~ey~~~-g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-~~~~ki~dfg~~~~~~~  756 (872)
                      ||||+.+ +++.+++..  ..++.+...++.|+++||+|||+.   +|+||||||+||+++. ++.+||+|||+++....
T Consensus        87 v~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~  163 (273)
T d1xwsa_          87 ILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKD  163 (273)
T ss_dssp             EEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred             EEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEECccccceeccc
Confidence            9999976 688888764  568888999999999999999999   9999999999999985 47899999999976544


Q ss_pred             cCCCCcccccccCchhhhcccC-CcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchHHH
Q 002875          757 ADGSFPAKIAWTESGEFYNAMK-EEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQDE  835 (872)
Q Consensus       757 ~~~~~~~~~~~~~~~e~~~~~~-~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (872)
                      .......++..|++||+..+.. ++.++||||+||++|||+||+.||......            .... ....+.   .
T Consensus       164 ~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~i------------~~~~-~~~~~~---~  227 (273)
T d1xwsa_         164 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI------------IRGQ-VFFRQR---V  227 (273)
T ss_dssp             SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH------------HHCC-CCCSSC---C
T ss_pred             ccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchHH------------hhcc-cCCCCC---C
Confidence            4333344677788999887655 467789999999999999999998643210            0000 000111   1


Q ss_pred             HHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          836 IKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       836 ~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..++.+++.+||+.||++|||++|++++
T Consensus       228 s~~~~~li~~~L~~dp~~R~s~~eil~h  255 (273)
T d1xwsa_         228 SSECQHLIRWCLALRPSDRPTFEEIQNH  255 (273)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            2457789999999999999999999875

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.9e-42  Score=361.93  Aligned_cols=249  Identities=18%  Similarity=0.205  Sum_probs=188.2

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch---hHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCCC
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT---RIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~---~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ..+.||+|+||.||+|+..+|+.||||+++....   ..+.+.+|+.+|++++|||||++++++.+++..++||||+.++
T Consensus         6 ~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~   85 (286)
T d1ob3a_           6 GLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQD   85 (286)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEE
T ss_pred             eccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhh
Confidence            7889999999999999999999999999965432   2567889999999999999999999999999999999999987


Q ss_pred             ChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCCC--Cccc
Q 002875          689 NLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADGS--FPAK  764 (872)
Q Consensus       689 ~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~~--~~~~  764 (872)
                      .+..+.+.  ..+..+...++.||+.||+|||+.   +|+||||||+|||++.++.+|++|||.+.........  ...+
T Consensus        86 ~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~  162 (286)
T d1ob3a_          86 LKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIV  162 (286)
T ss_dssp             HHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------C
T ss_pred             hHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceecccCccccceecc
Confidence            77777654  358888999999999999999998   9999999999999999999999999998764432211  1123


Q ss_pred             ccccCchhhhc-ccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC---------------Ccccccccccc---cccc-
Q 002875          765 IAWTESGEFYN-AMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ---------------NKPIDGLLGEM---YNEN-  824 (872)
Q Consensus       765 ~~~~~~~e~~~-~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~---------------~~~~~~~~~~~---~~~~-  824 (872)
                      .+.|.+||... ...++.++||||+||++|||+||+.||.+.....               .+.........   .... 
T Consensus       163 ~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (286)
T d1ob3a_         163 TLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYE  242 (286)
T ss_dssp             CCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCC
T ss_pred             cchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhccccccccc
Confidence            44456666654 4567899999999999999999999986432110               00000000000   0000 


Q ss_pred             ccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          825 EVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       825 ~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ..+...........+.+++.+||+.||++|||++|++++
T Consensus       243 ~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~H  281 (286)
T d1ob3a_         243 PLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (286)
T ss_dssp             CCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000000011223467899999999999999999999864

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-41  Score=360.41  Aligned_cols=258  Identities=19%  Similarity=0.230  Sum_probs=189.9

Q ss_pred             chhhhccCCCCCceeeeec-CC-CcEEEEEEeeccch---hHHHHHHHHHHhhcc---CCCCceeEEEEEec-----CCe
Q 002875          611 TECEEAARPQSAAGCKAVL-PT-GITVSVKKIEWGAT---RIKIVSEFITRIGTV---RHKNLIRLLGFCYN-----RHQ  677 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~-g~~vavK~~~~~~~---~~~~~~~e~~~l~~l---~H~niv~l~~~~~~-----~~~  677 (872)
                      +..+.||+|+||+||+|.. .+ ++.||||+++....   ....+.+|+.+++.+   +|||||+++++|..     ...
T Consensus        10 ~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~   89 (305)
T d1blxa_          10 ECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETK   89 (305)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEE
T ss_pred             EEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCce
Confidence            3889999999999999985 44 67899999965322   233455677776655   79999999999863     347


Q ss_pred             eEEEEcccCCCChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          678 AYLLYDYLPNGNLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       678 ~~lv~ey~~~g~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      .++|||||++|++......   ..++.....++.|++.||+|||++   +|+||||||+|||+++++.+||+|||+++..
T Consensus        90 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~  166 (305)
T d1blxa_          90 LTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIY  166 (305)
T ss_dssp             EEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCCSCCCC
T ss_pred             EEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeeecchhhhhhh
Confidence            8999999998877655433   357888889999999999999999   9999999999999999999999999998764


Q ss_pred             cccC-CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCC---------------Cccccccc-
Q 002875          755 QLAD-GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQ---------------NKPIDGLL-  817 (872)
Q Consensus       755 ~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~---------------~~~~~~~~-  817 (872)
                      .... .....++..|++||+..+..++.++||||+||++|||+||+.||.+.....               .+...... 
T Consensus       167 ~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  246 (305)
T d1blxa_         167 SFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALP  246 (305)
T ss_dssp             CGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSC
T ss_pred             cccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccch
Confidence            3322 223346677899999988889999999999999999999999997543110               00000000 


Q ss_pred             cccc-cccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH--HcccCCCC
Q 002875          818 GEMY-NENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGLKPHG  871 (872)
Q Consensus       818 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~~~~~  871 (872)
                      .... ...............+.+.+++.+||+.||++|||++|++++  ++++...+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~~~k  303 (305)
T d1blxa_         247 RQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERCK  303 (305)
T ss_dssp             GGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCCC
T ss_pred             hhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCchhhC
Confidence            0000 000000000011223457789999999999999999999987  66765543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=349.60  Aligned_cols=249  Identities=19%  Similarity=0.190  Sum_probs=193.2

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCCeeEEEEcccCC
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRHQAYLLYDYLPN  687 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~~~~lv~ey~~~  687 (872)
                      ..+.||+|+||+||+|+. .+|+.||||+++...   ...+.+.+|+.++++++|||||+++++|.+++..++||||+.+
T Consensus         6 ~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~   85 (292)
T d1unla_           6 KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ   85 (292)
T ss_dssp             EEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSE
T ss_pred             eeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeeccc
Confidence            889999999999999995 688999999996532   3356788999999999999999999999999999999999999


Q ss_pred             CChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccCC--CCcc
Q 002875          688 GNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLADG--SFPA  763 (872)
Q Consensus       688 g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~~--~~~~  763 (872)
                      +++..++..  ..++.+...++.|+++||+|||+.   +|+||||||+|||++.++.+|++|||.++.......  ....
T Consensus        86 ~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~  162 (292)
T d1unla_          86 DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEV  162 (292)
T ss_dssp             EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCC
T ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhcccCCCccceeec
Confidence            999888765  347788899999999999999999   999999999999999999999999999976543322  2223


Q ss_pred             cccccCchhhhccc-CCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc----------------ccccccccccc---
Q 002875          764 KIAWTESGEFYNAM-KEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP----------------IDGLLGEMYNE---  823 (872)
Q Consensus       764 ~~~~~~~~e~~~~~-~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~----------------~~~~~~~~~~~---  823 (872)
                      +..++++||..... .++.++||||+||++|||+||+.||..+.......                ......+....   
T Consensus       163 ~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (292)
T d1unla_         163 VTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMY  242 (292)
T ss_dssp             SCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCC
T ss_pred             cccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccc
Confidence            45667788876654 46889999999999999999999986544321100                00000000000   


Q ss_pred             -cccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          824 -NEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       824 -~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                       ...............+.+++.+|++.||++|||++|++++
T Consensus       243 ~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~H  283 (292)
T d1unla_         243 PATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             CTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             cccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             0000001112233567889999999999999999999875

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-41  Score=361.10  Aligned_cols=256  Identities=21%  Similarity=0.279  Sum_probs=187.4

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecCC-----
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH-----  676 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~-----  676 (872)
                      +.|.  ..+.||+|+||+||+|.. .+|+.||||+++...   ...+.+.+|+++|++++|||||+++++|...+     
T Consensus        18 ~~Y~--~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          18 AVYR--DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             SSEE--EEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             CcEE--EEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            3455  889999999999999985 679999999997532   23567889999999999999999999998654     


Q ss_pred             -eeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          677 -QAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       677 -~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                       +.|+||||| +++|..+.+. ..++.....++.|++.||+|||+.   +|+||||||+|||++.++.+|++|||+++..
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~  171 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQA  171 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             ceEEEEEecc-cccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccceecc
Confidence             579999999 5688887754 578899999999999999999999   9999999999999999999999999999876


Q ss_pred             cccCCCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc----c-----c--------
Q 002875          755 QLADGSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID----G-----L--------  816 (872)
Q Consensus       755 ~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~----~-----~--------  816 (872)
                      ...... ..++.+|++||...+ ..++.++||||+||++|||+||+.||.+..........    .     .        
T Consensus       172 ~~~~~~-~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (346)
T d1cm8a_         172 DSEMTG-YVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDE  250 (346)
T ss_dssp             CSSCCS-SCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHH
T ss_pred             CCcccc-ccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchh
Confidence            543332 334556777776654 56788999999999999999999998754321100000    0     0        


Q ss_pred             ----ccccccccccCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH--HcccC
Q 002875          817 ----LGEMYNENEVGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGLK  868 (872)
Q Consensus       817 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~~  868 (872)
                          ......................+.+++.+||+.||++|||++|++++  ++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         251 AKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             HHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             hhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence                00000000000000011223467799999999999999999999987  55554

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-40  Score=356.03  Aligned_cols=254  Identities=18%  Similarity=0.182  Sum_probs=182.0

Q ss_pred             CcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeEEEEEecC------CeeEEE
Q 002875          609 NSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRLLGFCYNR------HQAYLL  681 (872)
Q Consensus       609 ~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~------~~~~lv  681 (872)
                      +|...++||+|+||+||+|+. .+|+.||||++.....   ...+|+++|++++|||||+++++|...      .+.|+|
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~---~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv   97 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV   97 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS---SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch---HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEE
Confidence            344888999999999999996 6799999999975432   234689999999999999999998643      357899


Q ss_pred             EcccCCCChHHHh---hC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEcccccccccc
Q 002875          682 YDYLPNGNLSEKI---RT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQ  755 (872)
Q Consensus       682 ~ey~~~g~L~~~l---~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~  755 (872)
                      ||||++|.+....   ..  ..++.+...++.|+++||+|||++   +|+||||||+|||++.++ .+||+|||+++...
T Consensus        98 ~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~  174 (350)
T d1q5ka_          98 LDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLV  174 (350)
T ss_dssp             EECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCEECC
T ss_pred             EeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchhhcc
Confidence            9999876443332   22  468889999999999999999998   999999999999999775 89999999987654


Q ss_pred             ccCCC-CcccccccCchh-hhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-------------cc---ccc
Q 002875          756 LADGS-FPAKIAWTESGE-FYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-------------ID---GLL  817 (872)
Q Consensus       756 ~~~~~-~~~~~~~~~~~e-~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-------------~~---~~~  817 (872)
                      ..... ...++..|.+|| +.....++.++||||+||++|||+||+.||..........             ..   ...
T Consensus       175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~  254 (350)
T d1q5ka_         175 RGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNY  254 (350)
T ss_dssp             TTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC--
T ss_pred             CCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccch
Confidence            32222 222334444555 4455678999999999999999999999987543211000             00   000


Q ss_pred             cccccccccCC---CCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH--HcccC
Q 002875          818 GEMYNENEVGS---SSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL--LSGLK  868 (872)
Q Consensus       818 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~--L~~~~  868 (872)
                      ....-+.....   .........++.+++.+||+.||++|||++|++++  ++.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         255 TEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             -CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             hhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence            00000000000   00011223467889999999999999999999975  45443

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-40  Score=357.41  Aligned_cols=249  Identities=18%  Similarity=0.206  Sum_probs=184.1

Q ss_pred             hhhhccCCCCCceeeeec-CCCcEEEEEEeeccc--hhHHHHHHHHHHhhccCCCCceeEEEEEecCC----eeEEEEcc
Q 002875          612 ECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA--TRIKIVSEFITRIGTVRHKNLIRLLGFCYNRH----QAYLLYDY  684 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~--~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~~----~~~lv~ey  684 (872)
                      ..+.||+|+||.||+|+. .+|+.||||+++...  ...+.+.+|+++|++++|||||++++++..+.    ..++++||
T Consensus        12 ~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~   91 (345)
T d1pmea_          12 NLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTH   91 (345)
T ss_dssp             EEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEE
T ss_pred             EEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEe
Confidence            889999999999999984 789999999997532  33567889999999999999999999997653    23455566


Q ss_pred             cCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccccccC-----
Q 002875          685 LPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQLAD-----  758 (872)
Q Consensus       685 ~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~~~~-----  758 (872)
                      +.+|+|.+++.. ..++.....++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++......     
T Consensus        92 ~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~  168 (345)
T d1pmea_          92 LMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGF  168 (345)
T ss_dssp             CCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCT
T ss_pred             ecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCceeeccCCCcccee
Confidence            779999999864 568899999999999999999999   99999999999999999999999999987543321     


Q ss_pred             CCCcccccccCchhhh-cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-cc----------------cccc
Q 002875          759 GSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GL----------------LGEM  820 (872)
Q Consensus       759 ~~~~~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~----------------~~~~  820 (872)
                      .....++..|.+||.. ....++.++||||+||++|||+||+.||............ ..                ....
T Consensus       169 ~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T d1pmea_         169 LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNY  248 (345)
T ss_dssp             TCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHH
T ss_pred             eccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcc
Confidence            1122355567778876 4556788999999999999999999998754321000000 00                0000


Q ss_pred             ccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          821 YNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       821 ~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ....+.......    .....++.+++.+||+.||++|||++|++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         249 LLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000000000011    1122467899999999999999999999976

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-40  Score=352.52  Aligned_cols=247  Identities=15%  Similarity=0.117  Sum_probs=187.1

Q ss_pred             hhcCcchhhhccCCCCCceeeeec----CCCcEEEEEEeeccc-----hhHHHHHHHHHHhhccCC-CCceeEEEEEecC
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL----PTGITVSVKKIEWGA-----TRIKIVSEFITRIGTVRH-KNLIRLLGFCYNR  675 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~----~~g~~vavK~~~~~~-----~~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~  675 (872)
                      +.|.  ..+.||+|+||+||+|..    .+|+.||||.++...     ...+.+.+|++++++++| ||||++++++.+.
T Consensus        24 ~~y~--~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~  101 (322)
T d1vzoa_          24 ENFE--LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE  101 (322)
T ss_dssp             GGEE--EEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET
T ss_pred             hceE--EEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccC
Confidence            3355  889999999999999974    368999999986432     235667889999999977 8999999999999


Q ss_pred             CeeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccc
Q 002875          676 HQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYL  753 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~  753 (872)
                      +..++|||||.+|+|.+++..  .........++.|++.|++|+|+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       102 ~~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         102 TKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             TEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred             CceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccchhh
Confidence            999999999999999999875  346677788999999999999999   999999999999999999999999999976


Q ss_pred             ccccCCC---CcccccccCchhhhcc--cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCC
Q 002875          754 TQLADGS---FPAKIAWTESGEFYNA--MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGS  828 (872)
Q Consensus       754 ~~~~~~~---~~~~~~~~~~~e~~~~--~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (872)
                      .......   ...+...+.+||....  ..++.++||||+||++|||+||+.||.........  ........... ...
T Consensus       179 ~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~--~~i~~~~~~~~-~~~  255 (322)
T d1vzoa_         179 FVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQ--AEISRRILKSE-PPY  255 (322)
T ss_dssp             CCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCH--HHHHHHHHHCC-CCC
T ss_pred             hcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHhcccCC-CCC
Confidence            4332211   1223344555555533  34677899999999999999999998754322211  11111111111 111


Q ss_pred             CCchHHHHHHHHHHHHHcccCCCCCCC-----CHHHHHHH
Q 002875          829 SSSLQDEIKLVLDVALLCTRSTPSDRP-----SMEEALKL  863 (872)
Q Consensus       829 ~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----t~~~v~~~  863 (872)
                      +   .....++.+++.+||+.||++||     |++|+++|
T Consensus       256 ~---~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~H  292 (322)
T d1vzoa_         256 P---QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  292 (322)
T ss_dssp             C---TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             c---ccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcC
Confidence            1   12345678899999999999999     58898864

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-40  Score=348.97  Aligned_cols=252  Identities=19%  Similarity=0.264  Sum_probs=184.9

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec-------
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN-------  674 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~-------  674 (872)
                      .+|.  ..+.||+|+||+||+|+. .+|+.||||++....   ...+.+.+|+.+|++++||||+++++++..       
T Consensus        10 ~rY~--i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~   87 (318)
T d3blha1          10 SKYE--KLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   87 (318)
T ss_dssp             GGEE--EEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             CCEE--EEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccc
Confidence            4455  889999999999999995 689999999986432   234567889999999999999999999865       


Q ss_pred             -CCeeEEEEcccCCCChHHHhhC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccc
Q 002875          675 -RHQAYLLYDYLPNGNLSEKIRT--KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFK  751 (872)
Q Consensus       675 -~~~~~lv~ey~~~g~L~~~l~~--~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~  751 (872)
                       ++..|+|||||+++.+......  .....+.+.++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus        88 ~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg~~  164 (318)
T d3blha1          88 CKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLA  164 (318)
T ss_dssp             ---CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             cCceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeeccee
Confidence             3468999999998777665543  346778889999999999999999   9999999999999999999999999998


Q ss_pred             ccccccC------CCCcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc---------c
Q 002875          752 YLTQLAD------GSFPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID---------G  815 (872)
Q Consensus       752 ~~~~~~~------~~~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~---------~  815 (872)
                      +......      .....++.+|.+||.... ..++.++||||+||++|||+||+.||.+..........         .
T Consensus       165 ~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~  244 (318)
T d3blha1         165 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPE  244 (318)
T ss_dssp             EECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTT
T ss_pred             eecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChh
Confidence            6543211      112235667888887654 46889999999999999999999998643211100000         0


Q ss_pred             c--------ccccccccccCCCCchHH------HHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          816 L--------LGEMYNENEVGSSSSLQD------EIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       816 ~--------~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      .        ........ ........+      ....+++++.+||+.||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         245 VWPNVDNYELYEKLELV-KGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             TSTTCCCC-------CC-SSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hccccchhhhhhhhccc-ccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence            0        00000000 000111111      12356789999999999999999999976

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.3e-39  Score=346.87  Aligned_cols=249  Identities=14%  Similarity=0.165  Sum_probs=188.6

Q ss_pred             hcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-CCCceeEEEEEec--CCeeEEEE
Q 002875          607 SFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-HKNLIRLLGFCYN--RHQAYLLY  682 (872)
Q Consensus       607 ~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~--~~~~~lv~  682 (872)
                      .|.  ..+.||+|+||.||+|+. .+|+.||||+++..  ..+.+.+|+++|++++ |||||++++++..  ....++||
T Consensus        36 ~y~--i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~--~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          36 DYQ--LVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GEE--EEEEEEECSSEEEEEEEETTTTEEEEEEEECSS--CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             CeE--EEEEEecCcCeEEEEEEECCCCCEEEEEEECHH--HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            355  889999999999999986 68999999999753  3456788999999996 9999999999974  35689999


Q ss_pred             cccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCC-CeeEccccccccccccC-CC
Q 002875          683 DYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENM-EPHLAEFGFKYLTQLAD-GS  760 (872)
Q Consensus       683 ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~-~~ki~dfg~~~~~~~~~-~~  760 (872)
                      |||++|+|.+.. +..+..+...++.||+.||+|||++   +|+||||||+|||++.++ .+|++|||+++...... ..
T Consensus       112 e~~~~~~L~~~~-~~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~  187 (328)
T d3bqca1         112 EHVNNTDFKQLY-QTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYN  187 (328)
T ss_dssp             ECCCSCBGGGTT-TSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCC
T ss_pred             eecCCCcHHHHh-cCCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccCCCccc
Confidence            999999998765 4578888899999999999999999   999999999999998655 59999999997654332 22


Q ss_pred             CcccccccCchhhhcc-cCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccc----------------------cccc
Q 002875          761 FPAKIAWTESGEFYNA-MKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPI----------------------DGLL  817 (872)
Q Consensus       761 ~~~~~~~~~~~e~~~~-~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~----------------------~~~~  817 (872)
                      ...++.++.+||.... ..++.++||||+||++|||++|+.||...........                      ....
T Consensus       188 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~  267 (328)
T d3bqca1         188 VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRF  267 (328)
T ss_dssp             SCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGG
T ss_pred             ccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCccc
Confidence            2334555677777654 4578999999999999999999999875543211000                      0000


Q ss_pred             cccccccc------cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          818 GEMYNENE------VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       818 ~~~~~~~~------~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ........      ...........+++.+++.+||+.||++|||++|++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~H  319 (328)
T d3bqca1         268 NDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  319 (328)
T ss_dssp             GGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             chhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            00000000      00011112234568899999999999999999999874

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-39  Score=348.79  Aligned_cols=252  Identities=19%  Similarity=0.225  Sum_probs=186.8

Q ss_pred             hhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEec------C
Q 002875          606 RSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYN------R  675 (872)
Q Consensus       606 ~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~------~  675 (872)
                      +.|.  ..+.||+|+||+||+|.. .+|+.||||++....   ...+.+.+|+.++++++|||||+++++|..      .
T Consensus        17 ~~Y~--i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          17 KRYQ--NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             TTEE--EEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             CCeE--EEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence            4455  889999999999999985 579999999997532   335568899999999999999999999964      3


Q ss_pred             CeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEcccccccccc
Q 002875          676 HQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLTQ  755 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~~  755 (872)
                      ...|+|||||.+ ++.+.+....++.+...++.|++.||+|||+.   +|+||||||+|||++.++.+|++|||+++...
T Consensus        95 ~~~~iv~Ey~~~-~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~  170 (355)
T d2b1pa1          95 QDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_dssp             CEEEEEEECCSE-EHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             ceeEEEEeccch-HHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhhhhccc
Confidence            678999999965 56667777889999999999999999999999   99999999999999999999999999987654


Q ss_pred             ccCCC-CcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcc-------------c---ccccc
Q 002875          756 LADGS-FPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKP-------------I---DGLLG  818 (872)
Q Consensus       756 ~~~~~-~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~-------------~---~~~~~  818 (872)
                      ..... ...++..|.+||...+..++.++||||+||++|||++|+.||.+........             .   .....
T Consensus       171 ~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  250 (355)
T d2b1pa1         171 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVR  250 (355)
T ss_dssp             ----------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHH
T ss_pred             cccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHH
Confidence            32222 2235566888899888889999999999999999999999986443110000             0   00000


Q ss_pred             ---------------ccccccc-cCCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          819 ---------------EMYNENE-VGSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       819 ---------------~~~~~~~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                                     ....... ............++.+++.+|++.||++|||++|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         251 NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             HHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                           0000000 00011123456678999999999999999999999865

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-39  Score=352.86  Aligned_cols=253  Identities=20%  Similarity=0.250  Sum_probs=185.4

Q ss_pred             HhhcCcchhhhccCCCCCceeeeec-CCCcEEEEEEeeccc---hhHHHHHHHHHHhhccCCCCceeEEEEEecC-----
Q 002875          605 LRSFNSTECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGA---TRIKIVSEFITRIGTVRHKNLIRLLGFCYNR-----  675 (872)
Q Consensus       605 ~~~~~~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~---~~~~~~~~e~~~l~~l~H~niv~l~~~~~~~-----  675 (872)
                      .+.|.  ..+.||+|+||+||+|.. .+|+.||||+++...   ...+.+.+|++++++++|||||++++++...     
T Consensus        17 ~~rY~--i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~   94 (348)
T d2gfsa1          17 PERYQ--NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE   94 (348)
T ss_dssp             ETTEE--EEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTT
T ss_pred             CCCeE--EEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeecccccc
Confidence            34455  889999999999999984 789999999997543   2345678999999999999999999998643     


Q ss_pred             CeeEEEEcccCCCChHHHhhC-CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccccc
Q 002875          676 HQAYLLYDYLPNGNLSEKIRT-KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKYLT  754 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~~~  754 (872)
                      ...++||||+.+|+|.++++. ..+..+...++.||+.||+|||+.   +|+||||||+|||++.++.+|++|||++...
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~a~~~  171 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHT  171 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC----CC
T ss_pred             CceEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccchhccc
Confidence            345677788889999999965 568888999999999999999999   9999999999999999999999999998765


Q ss_pred             cccCCCCcccccccCchhhh-cccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-cc----------------
Q 002875          755 QLADGSFPAKIAWTESGEFY-NAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-GL----------------  816 (872)
Q Consensus       755 ~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-~~----------------  816 (872)
                      ........ +..++.+||.. ....++.++||||+||++|||+||+.||.+.......... ..                
T Consensus       172 ~~~~~~~~-g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  250 (348)
T d2gfsa1         172 DDEMTGYV-ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSES  250 (348)
T ss_dssp             TGGGSSSC-HHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHH
T ss_pred             Cccccccc-ccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchh
Confidence            44333333 44446666654 4455788999999999999999999998754321100000 00                


Q ss_pred             ccccccccccCCCCch----HHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 LGEMYNENEVGSSSSL----QDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ................    .....++.+++.+||+.||++|||++|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~H  301 (348)
T d2gfsa1         251 ARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  301 (348)
T ss_dssp             HHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcC
Confidence            0000000000000000    1123467899999999999999999999975

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.9e-39  Score=339.52  Aligned_cols=250  Identities=10%  Similarity=-0.008  Sum_probs=184.6

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCceeE-EEEEecCCeeEEEEcccCCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLIRL-LGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv~l-~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ...+.||+|+||.||+|+. .+|+.||||.+..... .+.+..|++++++++|+|+|.. .+++.+.+..++||||+. |
T Consensus        10 ~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~   87 (299)
T d1ckia_          10 RLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-P   87 (299)
T ss_dssp             EEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT-SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-C
T ss_pred             EEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc-CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-C
Confidence            3788999999999999985 6799999999875433 3456788999999987776554 555567788999999995 5


Q ss_pred             ChHHHhh---CCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeC---CCCCeeEccccccccccccCC---
Q 002875          689 NLSEKIR---TKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFD---ENMEPHLAEFGFKYLTQLADG---  759 (872)
Q Consensus       689 ~L~~~l~---~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~---~~~~~ki~dfg~~~~~~~~~~---  759 (872)
                      ++.+.+.   ...++.+...++.|++.||+|||+.   +|+||||||+||+++   .+..+|++|||+|+.......   
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~  164 (299)
T d1ckia_          88 SLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH  164 (299)
T ss_dssp             BHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCB
T ss_pred             chhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCcceeccccccccc
Confidence            6666654   2468899999999999999999999   999999999999875   455799999999986543221   


Q ss_pred             ------CCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCchH
Q 002875          760 ------SFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSSLQ  833 (872)
Q Consensus       760 ------~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (872)
                            ....++..|++||...+..++.++|||||||++|||+||+.||......................  +......
T Consensus       165 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  242 (299)
T d1ckia_         165 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST--PIEVLCK  242 (299)
T ss_dssp             CCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHS--CHHHHTT
T ss_pred             eeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCC--ChhHhcc
Confidence                  12235667889999888889999999999999999999999997543322111110000000000  0000011


Q ss_pred             HHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          834 DEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       834 ~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ..+.++.+++..||+.||++||+++++.+.|+.+
T Consensus       243 ~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~  276 (299)
T d1ckia_         243 GYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL  276 (299)
T ss_dssp             TSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence            2235678899999999999999999988877643

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=5.7e-39  Score=336.75  Aligned_cols=250  Identities=10%  Similarity=0.010  Sum_probs=191.3

Q ss_pred             chhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccCC-CCceeEEEEEecCCeeEEEEcccCCC
Q 002875          611 TECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVRH-KNLIRLLGFCYNRHQAYLLYDYLPNG  688 (872)
Q Consensus       611 ~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H-~niv~l~~~~~~~~~~~lv~ey~~~g  688 (872)
                      ...+.||+|+||+||+|+. .+|+.||||++.... ..+.+.+|+++++.++| +|++.+++++.+....++||||+ +|
T Consensus         8 ~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~   85 (293)
T d1csna_           8 KVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GP   85 (293)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CC
T ss_pred             EEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc-CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CC
Confidence            3788999999999999995 679999999986533 23456778888888876 89999999999999999999999 68


Q ss_pred             ChHHHhhC---CCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCC-----CCCeeEccccccccccccC--
Q 002875          689 NLSEKIRT---KRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDE-----NMEPHLAEFGFKYLTQLAD--  758 (872)
Q Consensus       689 ~L~~~l~~---~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~-----~~~~ki~dfg~~~~~~~~~--  758 (872)
                      +|.++++.   ..++.+...++.|++.||+|||+.   +|+||||||+||+++.     ++.+||+|||+|+......  
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (293)
T d1csna_          86 SLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK  162 (293)
T ss_dssp             BHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC
T ss_pred             CHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccceeEEcccCccc
Confidence            99998864   457888899999999999999999   9999999999999974     5679999999997654321  


Q ss_pred             -------CCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCccccccccccccccccCCCCc
Q 002875          759 -------GSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPIDGLLGEMYNENEVGSSSS  831 (872)
Q Consensus       759 -------~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  831 (872)
                             .....+++.|++||...+..++.++|||||||++|||+||+.||..............+.+.....+.  ...
T Consensus       163 ~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~--~~l  240 (293)
T d1csna_         163 QHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL--REL  240 (293)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH--HHH
T ss_pred             cceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCCh--HHh
Confidence                   11223667788999998888999999999999999999999999754332211111111000000000  000


Q ss_pred             hHHHHHHHHHHHHHcccCCCCCCCCHHHHHHHHccc
Q 002875          832 LQDEIKLVLDVALLCTRSTPSDRPSMEEALKLLSGL  867 (872)
Q Consensus       832 ~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~L~~~  867 (872)
                      ....++++.+++..|+..+|++||+++.+.+.|+++
T Consensus       241 ~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~  276 (293)
T d1csna_         241 CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV  276 (293)
T ss_dssp             TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence            011234677888899999999999998888877654

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-34  Score=310.42  Aligned_cols=250  Identities=15%  Similarity=0.115  Sum_probs=182.1

Q ss_pred             cchhhhccCCCCCceeeeec-CCCcEEEEEEeeccchhHHHHHHHHHHhhccC-----------CCCceeEEEEEec--C
Q 002875          610 STECEEAARPQSAAGCKAVL-PTGITVSVKKIEWGATRIKIVSEFITRIGTVR-----------HKNLIRLLGFCYN--R  675 (872)
Q Consensus       610 ~~~~~~~g~g~~~~v~~~~~-~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~-----------H~niv~l~~~~~~--~  675 (872)
                      |...++||+|+||.||+|+. .+|+.||||+++......+.+.+|+.++++++           |+|||++++++..  .
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~   94 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP   94 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccc
Confidence            44899999999999999985 68999999999876555677788898888775           5789999998864  3


Q ss_pred             CeeEEEEcccCCCChHHHhh-----CCCCHHHHHHHHHHHHHHHHHHhh-CCCCCcccCCCCCCCeeeCCCC------Ce
Q 002875          676 HQAYLLYDYLPNGNLSEKIR-----TKRDWAAKYKIVLGVARGLCFLHH-DCYPAIPHGDLKASNIVFDENM------EP  743 (872)
Q Consensus       676 ~~~~lv~ey~~~g~L~~~l~-----~~~~~~~~~~i~~~i~~gl~~lH~-~~~~~i~Hrdlk~~Nill~~~~------~~  743 (872)
                      ...++||+++..+.......     ...+......++.|++.|++|||+ .   +|+||||||+|||++.++      .+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~---~IvHrDlKp~NIll~~~~~~~~~~~~  171 (362)
T d1q8ya_          95 NGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC---GIIHTDIKPENVLMEIVDSPENLIQI  171 (362)
T ss_dssp             TEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             cceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhc---CcccccCChhHeeeeccCccccccee
Confidence            56677777776655333221     244678888999999999999998 5   899999999999998655      39


Q ss_pred             eEccccccccccccCCCCcccccccCchhhhcccCCcccccchhHHHHHHHHHcCCCCCCCCCCCCCcccc-------cc
Q 002875          744 HLAEFGFKYLTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGEIILEILTNGRLTNAGSSLQNKPID-------GL  816 (872)
Q Consensus       744 ki~dfg~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gvil~el~tg~~p~~~~~~~~~~~~~-------~~  816 (872)
                      |++|||.+....... ....++.+|.+||......++.++||||+||+++||+||+.||............       ..
T Consensus       172 kl~dfg~s~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~  250 (362)
T d1q8ya_         172 KIADLGNACWYDEHY-TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIEL  250 (362)
T ss_dssp             EECCCTTCEETTBCC-CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHH
T ss_pred             eEeeccccccccccc-ccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHH
Confidence            999999987544332 2333556678889888888899999999999999999999998743321100000       00


Q ss_pred             cc--------------cccc------c-ccc----------CCCCchHHHHHHHHHHHHHcccCCCCCCCCHHHHHHH
Q 002875          817 LG--------------EMYN------E-NEV----------GSSSSLQDEIKLVLDVALLCTRSTPSDRPSMEEALKL  863 (872)
Q Consensus       817 ~~--------------~~~~------~-~~~----------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rpt~~~v~~~  863 (872)
                      ++              ...+      . ...          ..........+++.+++.+|++.||++|||++|+++|
T Consensus       251 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~H  328 (362)
T d1q8ya_         251 LGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH  328 (362)
T ss_dssp             HCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred             hCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            00              0000      0 000          0011124556788999999999999999999999976

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=6e-29  Score=264.08  Aligned_cols=249  Identities=27%  Similarity=0.378  Sum_probs=173.9

Q ss_pred             CCCEEECcCCcCcc--cCCccccCCCCCcEEECcC-CcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEe
Q 002875           43 SLISLDISRNNFSG--HFPGGIQSLRNLLVLDAFS-NSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFL  119 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~LdL~~-n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  119 (872)
                      +++.|+|++|.+.+  .+|.++.+|++|++|||++ |.+.+.+|.+|++|++|++|+|++|.+.+..+..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46666666666655  3556666666666666654 56666666666666666666666666666666666666666666


Q ss_pred             eCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCC-cEEEeecCCCcccCCccCcCCCCCCEEEccCCCC
Q 002875          120 HLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV-QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL  198 (872)
Q Consensus       120 ~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L-~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  198 (872)
                      ++++|.+...+|..++.++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            666666666666666666666666666666666666666666654 667777777777777777666443 577777777


Q ss_pred             cccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccC
Q 002875          199 AGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENL  278 (872)
Q Consensus       199 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~  278 (872)
                      .+..|..+..+++|+.+++++|.+.+.++ .++.+++|+.|++++|++++.+|+.+..+++|++|++++|+++|.+|+ +
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            77777777777777788877777765543 567777888888888888777777788888888888888888877774 4


Q ss_pred             CCCCCCcEEecCCCee
Q 002875          279 GRNSKLRWVDVSTNNF  294 (872)
Q Consensus       279 ~~~~~L~~L~ls~n~l  294 (872)
                      +.+++|+.+++++|+.
T Consensus       288 ~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             TTGGGSCGGGTCSSSE
T ss_pred             ccCCCCCHHHhCCCcc
Confidence            6677788888888864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.3e-28  Score=261.48  Aligned_cols=248  Identities=27%  Similarity=0.424  Sum_probs=188.7

Q ss_pred             CCcEEECCCCCCcc--cCCccccCCCCCCEEECcC-CcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEE
Q 002875           19 ELVDLNLSHNSFSG--QFPVEIFNLTSLISLDISR-NNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        19 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      +++.|+|++|.+.+  .+|.++.++++|++|+|++ |++.+.+|.+|.++++|++|||++|++.+..|..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            47777888877776  3567778888888888875 67777777778888888888888888777777777777888888


Q ss_pred             EccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCC-CEEEccCccCcccCCccccCCCCCcEEEeecCCC
Q 002875           96 NLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTV-THMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANL  174 (872)
Q Consensus        96 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L-~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l  174 (872)
                      ++++|.+.+.+|..|+++++|+++++++|.+.+.+|..+..+..+ +.++++.|.+.+..|..+.++..+ .++++.+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            888887777777778888888888888887777777777777665 677777777777777777666544 577777777


Q ss_pred             cccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccc
Q 002875          175 SGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESL  254 (872)
Q Consensus       175 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  254 (872)
                      .+.+|..+..+++|+.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|.+|+.+++|++|+|++|+++|.+|+ +
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            77777777777788888888777776544 566777788888888888777777788888888888888887777764 5


Q ss_pred             cCCCCcceeeccccc
Q 002875          255 VQLPSLEILFIWNNY  269 (872)
Q Consensus       255 ~~l~~L~~L~l~~n~  269 (872)
                      ..+++|+.+++++|+
T Consensus       288 ~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccCCCCCHHHhCCCc
Confidence            667777777777776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.4e-25  Score=245.52  Aligned_cols=337  Identities=23%  Similarity=0.316  Sum_probs=165.9

Q ss_pred             ECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCccc
Q 002875           24 NLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFS  103 (872)
Q Consensus        24 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~  103 (872)
                      .+..+.+++.+.  ...+.+|++|++++|.|+..  ++++.+++|++||+++|++++. | .++++++|++|++++|.+.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc
Confidence            444444444332  23455666666666666532  3456666666666666666643 2 2666666666666666665


Q ss_pred             ccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCC-------------------ccccCCCCC
Q 002875          104 GPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIP-------------------WQLGNMSEV  164 (872)
Q Consensus       104 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p-------------------~~~~~l~~L  164 (872)
                      +..  .++++++|+.|++++|.+++..+  ......+.......|.+....+                   ..+......
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL  177 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTC
T ss_pred             ccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhcccccc
Confidence            432  25666666666666666554322  2233344444443332221111                   111122222


Q ss_pred             cEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccc
Q 002875          165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN  244 (872)
Q Consensus       165 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n  244 (872)
                      .......+...  ....+..+++++.+++++|.+++..|  +...++|++|++++|.++.  ...+..+++|+.|++++|
T Consensus       178 ~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n  251 (384)
T d2omza2         178 ERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN  251 (384)
T ss_dssp             CEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSS
T ss_pred             ccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccC
Confidence            22223322221  23334455566666666666654433  3445566666666666553  234555666666666666


Q ss_pred             cCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCC
Q 002875          245 EMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSP  324 (872)
Q Consensus       245 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~  324 (872)
                      .+++..  .+..+++|+.|++++|.+.+..+  +..+..++.++++.|.+.+.  ..+.....++.+++++|++.+..  
T Consensus       252 ~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--  323 (384)
T d2omza2         252 QISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--  323 (384)
T ss_dssp             CCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--
T ss_pred             ccCCCC--cccccccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--
Confidence            665432  25555666666666666553322  44555556666665555421  12333334444444444444332  


Q ss_pred             CCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCC
Q 002875          325 SLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNN  388 (872)
Q Consensus       325 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n  388 (872)
                      .+..+++|++|++++|++++. + .+.++++|++|++++|++++..|  +..+++|++|++++|
T Consensus       324 ~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            144445555555555554432 1 34445555555555555543322  444444444444444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.6e-25  Score=243.36  Aligned_cols=357  Identities=22%  Similarity=0.273  Sum_probs=239.7

Q ss_pred             EECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcC
Q 002875           47 LDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLL  126 (872)
Q Consensus        47 L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l  126 (872)
                      ..++.+.+++.+.  ...+.+|++|++++|.++. + +.+..|++|++|+|++|.+++. | .|+++++|++|++++|.+
T Consensus        27 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          27 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQI  100 (384)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccc
Confidence            3566666665443  3567889999999999984 3 4688999999999999999865 3 399999999999999999


Q ss_pred             CccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCccc
Q 002875          127 NDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEF  206 (872)
Q Consensus       127 ~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  206 (872)
                      .+..  .++.+++|+.|+++.+...+..+  ......+..+....+.+....+..................+     ..+
T Consensus       101 ~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  171 (384)
T d2omza2         101 ADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPL  171 (384)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGG
T ss_pred             cccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchh-----hhh
Confidence            7654  38899999999999987765433  33456677777777766543332222222222222222211     234


Q ss_pred             ccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCCCCCcE
Q 002875          207 SRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRNSKLRW  286 (872)
Q Consensus       207 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~  286 (872)
                      ...+.........|...  ....+..+++++.++++.|.+++..|  +...++|+.|++++|.++..  +.+..+++|+.
T Consensus       172 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~  245 (384)
T d2omza2         172 ANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTD  245 (384)
T ss_dssp             TTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             ccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccch
Confidence            44455556666665543  34566778888888888888876544  45567888888888888742  35677788888


Q ss_pred             EecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcC
Q 002875          287 VDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGF  366 (872)
Q Consensus       287 L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  366 (872)
                      +++++|.+.+..                          .+..+++|+.|++++|++++..  .+..++.++.++++.|.+
T Consensus       246 L~l~~n~l~~~~--------------------------~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         246 LDLANNQISNLA--------------------------PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQL  297 (384)
T ss_dssp             EECCSSCCCCCG--------------------------GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCC
T ss_pred             hccccCccCCCC--------------------------cccccccCCEeeccCcccCCCC--cccccccccccccccccc
Confidence            888888775321                          2445677888888888877543  366777888888888877


Q ss_pred             CCCCCchhhhhcccccccccCCCCCCCcCCcccCCCcccccccccccccCCCCCCCCcCCccceeeccccccCCCCCCcc
Q 002875          367 TGGIPTDINQASKLEYFNVSNNPKLGGMIPAQTWSLPSLQNFSASACNITGNLPPFKSCKSISVIESHMNNLSGTIPESV  446 (872)
Q Consensus       367 ~~~~~~~~~~l~~L~~L~ls~n~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n~l~~~~p~~~  446 (872)
                      .+.  ..+..+++++.|++++|.                                                +.+..  .+
T Consensus       298 ~~~--~~~~~~~~l~~L~ls~n~------------------------------------------------l~~l~--~l  325 (384)
T d2omza2         298 EDI--SPISNLKNLTYLTLYFNN------------------------------------------------ISDIS--PV  325 (384)
T ss_dssp             SCC--GGGGGCTTCSEEECCSSC------------------------------------------------CSCCG--GG
T ss_pred             ccc--cccchhcccCeEECCCCC------------------------------------------------CCCCc--cc
Confidence            642  234455555555555542                                                11111  14


Q ss_pred             cccccCcEEEccCccceeccchhccCCCCCCEEECCCCccccccCccccCCCCCcEEECcCC
Q 002875          447 SNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHNSLSGQIPAKFGSCSSLTVLNVSFN  508 (872)
Q Consensus       447 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  508 (872)
                      ..+++|++|++++|++++. + .+..+++|++|++++|++++..|  +.++++|++|++++|
T Consensus       326 ~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            4566677777777776642 2 46667777777777777776554  667777777777776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.1e-23  Score=218.68  Aligned_cols=243  Identities=24%  Similarity=0.333  Sum_probs=145.0

Q ss_pred             CCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           19 ELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      +.+.+|=++++++.+ |..+.  +++++|+|++|+|+.+.+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~l-P~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCcc-CCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            356677777777644 55554  578888888888887666678888888888888888887777778888888888888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCc--ccCCccccCCCCCcEEEeecCCCcc
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQ--GNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      +|+++. +|..+  ...++.|++..|.+....+..+.....+..++...|...  ...+..+..+++|+.+++++|++..
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            888774 44433  356777888888776655555555555555555544221  1122333444444444444444432


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                       +|..                          .+++|++|++++|.++...+..|..++.++.|++++|.+.+..+..+..
T Consensus       165 -l~~~--------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         165 -IPQG--------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             -CCSS--------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             -cCcc--------------------------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc
Confidence             2221                          1334555555555554444455555555555555555555444445555


Q ss_pred             CCCcceeecccccccccCCccCCCCCCCcEEecCCCeee
Q 002875          257 LPSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFN  295 (872)
Q Consensus       257 l~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~  295 (872)
                      +++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus       218 l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            555555555555554 33445555555555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.4e-23  Score=221.39  Aligned_cols=254  Identities=20%  Similarity=0.234  Sum_probs=213.9

Q ss_pred             cCCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccc
Q 002875            7 ALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEI   86 (872)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~   86 (872)
                      +||..+    .+.+++|+|++|+|+.+.+.+|.++++|++|++++|.+....|..|..+++|++|++++|+++. +|..+
T Consensus        24 ~lP~~l----~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~   98 (305)
T d1xkua_          24 KVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM   98 (305)
T ss_dssp             SCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC
T ss_pred             ccCCCC----CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch
Confidence            456543    4679999999999998888899999999999999999999889999999999999999999985 55443


Q ss_pred             cCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCC--ccCCccCCCCCCCCEEEccCccCcccCCccccCCCCC
Q 002875           87 SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLN--DQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEV  164 (872)
Q Consensus        87 ~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L  164 (872)
                        ...|+.|++++|.+....+..+.....++.++...|...  ...+..+..+++|+.++++.|.+.. +|..  ..++|
T Consensus        99 --~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L  173 (305)
T d1xkua_          99 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSL  173 (305)
T ss_dssp             --CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTC
T ss_pred             --hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCcc
Confidence              368999999999999877777888999999999887643  3445678889999999999997764 4433  36789


Q ss_pred             cEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccc
Q 002875          165 QYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYN  244 (872)
Q Consensus       165 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n  244 (872)
                      +.|++++|...+..+..+..++.++.|++++|.+.+..+..|..+++|++|+|++|+++. +|.+|..+++|++|++++|
T Consensus       174 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSS
T ss_pred             CEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCC
Confidence            999999999999999999999999999999999999988899999999999999999984 5778999999999999999


Q ss_pred             cCCCCCCccc------cCCCCcceeeccccccc
Q 002875          245 EMSGTVPESL------VQLPSLEILFIWNNYFS  271 (872)
Q Consensus       245 ~l~~~~p~~l------~~l~~L~~L~l~~n~l~  271 (872)
                      +++......|      ..+++|+.|++++|.++
T Consensus       253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9886533333      34566777777777654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-23  Score=219.75  Aligned_cols=225  Identities=23%  Similarity=0.254  Sum_probs=176.3

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc-C
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA-G   99 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~-~   99 (872)
                      .+++.++++++. +|..+.  +.+++|+|++|+|+++.+.+|.++++|++||+++|.+....+..+..+..++.++.. .
T Consensus        14 ~~v~c~~~~L~~-iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSS-CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCc-cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            456778888764 455554  568899999999988777889999999999999999888888888888888888765 5


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      |.+....|..|.++++|++|++++|.+....+..+....+|+.++++.|.+.+..+..+..+++|+.|++++|++.+..+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            56666667888899999999999988877777777777777778877777776656667777777888888887777777


Q ss_pred             ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCC
Q 002875          180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSG  248 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  248 (872)
                      ..+..+++|+.+++++|++.+..|..|..+++|++|++++|++.+..+..|+.+++|++|++++|++..
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            777777788888888888777777777777788888888888777777777777778888887777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.5e-24  Score=220.41  Aligned_cols=209  Identities=20%  Similarity=0.189  Sum_probs=194.5

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECc-CCcCccccCccccCCCCCCEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAF-SNSFSGSVPAEISQLEHLKVL   95 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~-~n~l~~~~p~~~~~L~~L~~L   95 (872)
                      .+.++.|+|++|+|+++.+.+|.++++|++|++++|.+..+.+..+..+..++.++.. .|.+....|..|.++++|++|
T Consensus        31 p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            3578999999999999988999999999999999999999999999999999999875 556777778889999999999


Q ss_pred             EccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCc
Q 002875           96 NLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLS  175 (872)
Q Consensus        96 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~  175 (872)
                      ++++|.+....+..+..+++|+.+++++|.++++.+..|..+++|++|++++|.+.+..+..+.++++|+++++++|.+.
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            99999998888888999999999999999999888889999999999999999999888888999999999999999999


Q ss_pred             ccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCc
Q 002875          176 GSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGP  225 (872)
Q Consensus       176 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  225 (872)
                      +..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|++...
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            99999999999999999999999998888999999999999999998743

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=4.1e-23  Score=200.89  Aligned_cols=165  Identities=11%  Similarity=0.036  Sum_probs=117.5

Q ss_pred             hhhhccCCCCCceeeeecCCCcEEEEEEeeccch-------------------hHHHHHHHHHHhhccCCCCceeEEEEE
Q 002875          612 ECEEAARPQSAAGCKAVLPTGITVSVKKIEWGAT-------------------RIKIVSEFITRIGTVRHKNLIRLLGFC  672 (872)
Q Consensus       612 ~~~~~g~g~~~~v~~~~~~~g~~vavK~~~~~~~-------------------~~~~~~~e~~~l~~l~H~niv~l~~~~  672 (872)
                      ..+.||+|+||.||+|+..+|+.||||+++.+..                   ......+|...+.++.|++++..+++.
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            5678999999999999999999999998753210                   122345678889999999999988664


Q ss_pred             ecCCeeEEEEcccCCCChHHHhhCCCCHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          673 YNRHQAYLLYDYLPNGNLSEKIRTKRDWAAKYKIVLGVARGLCFLHHDCYPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       673 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~i~~~i~~gl~~lH~~~~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                          ..++||||++++.+.+.     +......++.|+++|++|||+.   +|+||||||+|||++++ .++++|||.|.
T Consensus        84 ----~~~lvme~~~~~~~~~l-----~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~~~liDFG~a~  150 (191)
T d1zara2          84 ----GNAVLMELIDAKELYRV-----RVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-GIWIIDFPQSV  150 (191)
T ss_dssp             ----TTEEEEECCCCEEGGGC-----CCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-EEEECCCTTCE
T ss_pred             ----CCEEEEEeeccccccch-----hhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCC-CEEEEECCCcc
Confidence                23799999998665442     3334567899999999999999   99999999999999965 48999999986


Q ss_pred             cccccCCCCcccccccCchhhhcccCCcccccchhHHH
Q 002875          753 LTQLADGSFPAKIAWTESGEFYNAMKEEMYMDVYGFGE  790 (872)
Q Consensus       753 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~Dv~S~Gv  790 (872)
                      ..............-....+++ ...+..++||||..-
T Consensus       151 ~~~~~~~~~~l~rd~~~~~~~f-~r~y~~~~d~~s~~~  187 (191)
T d1zara2         151 EVGEEGWREILERDVRNIITYF-SRTYRTEKDINSAID  187 (191)
T ss_dssp             ETTSTTHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHH-cCCCCCcccHHHHHH
Confidence            5321110000000000001222 245678889999754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.7e-21  Score=196.41  Aligned_cols=200  Identities=21%  Similarity=0.218  Sum_probs=142.5

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ...+.+.+.+++.++. +|..+.  ++|++|+|++|+|+++.+++|.++++|++|+|++|.++. +| .+..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            4556667888888875 455554  578888888888887777778888888888888888874 33 356788888888


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      |++|.+.. .+..+.++++|++|++++|.+....+..+.                        .+.+++.|++++|.+..
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------------------~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR------------------------GLGELQELYLKGNELKT  138 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT------------------------TCTTCCEEECTTSCCCC
T ss_pred             cccccccc-cccccccccccccccccccccceeeccccc------------------------cccccccccccccccce
Confidence            88888774 466777888888888888777654444444                        44555556666666665


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCC
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMS  247 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  247 (872)
                      ..+..+..+++|+.+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++.
T Consensus       139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             eccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            55555666777777777777777666666777777777777777776 56666667777778887777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.8e-21  Score=195.37  Aligned_cols=202  Identities=22%  Similarity=0.285  Sum_probs=161.6

Q ss_pred             cCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 002875           39 FNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEF  118 (872)
Q Consensus        39 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  118 (872)
                      .....+.+.+.+++.++. +|..+.  ++|++|||++|.+++..+.+|.++++|++|+|++|.++.. | .++.+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccc
Confidence            455666667777777774 455443  4677777777777766666777777777777777777643 3 3566777777


Q ss_pred             eeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCC
Q 002875          119 LHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQL  198 (872)
Q Consensus       119 L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  198 (872)
                      |+|++|+++.                         .+..+.++++|+.|+++++.+.+..+..+..+.+++.|++++|.+
T Consensus        82 L~Ls~N~l~~-------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l  136 (266)
T d1p9ag_          82 LDLSHNQLQS-------------------------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL  136 (266)
T ss_dssp             EECCSSCCSS-------------------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccc-------------------------cccccccccccccccccccccceeecccccccccccccccccccc
Confidence            7777777643                         233455677788888888888877778888999999999999999


Q ss_pred             cccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeeccccccc
Q 002875          199 AGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFS  271 (872)
Q Consensus       199 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  271 (872)
                      ....+..+..+++|+.+++++|++++..+..|..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|.+.
T Consensus       137 ~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9888888999999999999999999888889999999999999999999 68888889999999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=6.2e-16  Score=165.64  Aligned_cols=298  Identities=22%  Similarity=0.265  Sum_probs=158.0

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      +.+++|||++|.++. +|+.   .++|++|+|++|+|+ .+|+.   +.+|+.|++++|+++. ++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence            468899999999875 4542   468899999999988 45654   4578888898888773 332 1  146888999


Q ss_pred             cCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCccc
Q 002875           98 AGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGS  177 (872)
Q Consensus        98 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~  177 (872)
                      ++|.+.. +|. ++.+++|++|++++|.+.... .   ....+..+.+..+...  ....+..++.++.+++++|.    
T Consensus       106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~----  173 (353)
T d1jl5a_         106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS----  173 (353)
T ss_dssp             CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSC----
T ss_pred             ccccccc-ccc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--ccccccccccceeccccccc----
Confidence            9888874 554 678888888888888775322 1   1233444444333221  12223344444444444444    


Q ss_pred             CCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCC
Q 002875          178 IPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQL  257 (872)
Q Consensus       178 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  257 (872)
                                          ......    .....+.+...++.+. .. ..+..++.|+.+++++|.... .+.   ..
T Consensus       174 --------------------~~~~~~----~~~~~~~l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~~-~~~---~~  223 (353)
T d1jl5a_         174 --------------------LKKLPD----LPLSLESIVAGNNILE-EL-PELQNLPFLTTIYADNNLLKT-LPD---LP  223 (353)
T ss_dssp             --------------------CSSCCC----CCTTCCEEECCSSCCS-SC-CCCTTCTTCCEEECCSSCCSS-CCS---CC
T ss_pred             --------------------cccccc----cccccccccccccccc-cc-ccccccccccccccccccccc-ccc---cc
Confidence                                332111    1112233333333332 11 123444555555555554432 111   12


Q ss_pred             CCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCCCCCCCCCcEEEc
Q 002875          258 PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPSLSNCSSLVRLRL  337 (872)
Q Consensus       258 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~L  337 (872)
                      .++..+.+..+.+... +.   ....+...++..+.+.+. +..   ........+..+.+.+.    ...+++|++|++
T Consensus       224 ~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~l-~~l---~~~~~~~~~~~~~~~~~----~~~~~~L~~L~L  291 (353)
T d1jl5a_         224 PSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL----CDLPPSLEELNV  291 (353)
T ss_dssp             TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE----CCCCTTCCEEEC
T ss_pred             cccccccccccccccc-cc---cccccccccccccccccc-ccc---cchhcccccccCccccc----cccCCCCCEEEC
Confidence            3344444444444321 11   122334444444433221 000   01122233333333321    223567888888


Q ss_pred             CCCccccccCccCCCCCCCcEEEcCCCcCCCCCCchhhhhcccccccccCCC
Q 002875          338 EDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPTDINQASKLEYFNVSNNP  389 (872)
Q Consensus       338 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~n~  389 (872)
                      ++|+++. +|.   .+++|+.|++++|+++ .+|..   +++|++|++++|+
T Consensus       292 s~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         292 SNNKLIE-LPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred             CCCccCc-ccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc
Confidence            8887773 443   3567778888888776 34432   3467777777774

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=1.7e-15  Score=162.11  Aligned_cols=289  Identities=24%  Similarity=0.269  Sum_probs=187.7

Q ss_pred             cCCcchhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccc
Q 002875            7 ALPGKPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEI   86 (872)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~   86 (872)
                      +||..     .++|+.|+|++|+|+. +|..   +.+|+.|++++|.++.+ ++ +  .+.|++||+++|.+. .+| .+
T Consensus        52 ~lp~~-----~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~~n~l~-~lp-~~  116 (353)
T d1jl5a_          52 SLPEL-----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLE-KLP-EL  116 (353)
T ss_dssp             CCCSC-----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCS-SCC-CC
T ss_pred             CCCCC-----CCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccchh-hh-h--ccccccccccccccc-ccc-ch
Confidence            56653     5679999999999984 4654   46899999999998743 32 1  246999999999998 455 46


Q ss_pred             cCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcE
Q 002875           87 SQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQY  166 (872)
Q Consensus        87 ~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  166 (872)
                      ..+++|++|++++|.+.. .+..   ...+..|.+..+...  ....++.++.++.+.+..|...... .   .....+.
T Consensus       117 ~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~-~---~~~~~~~  186 (353)
T d1jl5a_         117 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLP-D---LPLSLES  186 (353)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCC-C---CCTTCCE
T ss_pred             hhhccceeeccccccccc-cccc---cccccchhhcccccc--ccccccccccceecccccccccccc-c---ccccccc
Confidence            889999999999998874 3333   456777887766543  4566888999999999988765322 1   2233456


Q ss_pred             EEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccC
Q 002875          167 LDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEM  246 (872)
Q Consensus       167 L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l  246 (872)
                      +..+++.+. .+ ..+..++.|+.++++.|..... +   ....++..+.+.++.+... +   .....+...++..+.+
T Consensus       187 l~~~~~~~~-~~-~~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         187 IVAGNNILE-EL-PELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIF  256 (353)
T ss_dssp             EECCSSCCS-SC-CCCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCC
T ss_pred             ccccccccc-cc-cccccccccccccccccccccc-c---ccccccccccccccccccc-c---cccccccccccccccc
Confidence            666655554 23 3456788889999988876643 2   2345677888888777532 2   2234566666665554


Q ss_pred             CCCCCccccCC-CCcceeecccccccccCCccCCCCCCCcEEecCCCeeeecCCCCCCCCCceeEEEcCCCcCCCCCCCC
Q 002875          247 SGTVPESLVQL-PSLEILFIWNNYFSGSLPENLGRNSKLRWVDVSTNNFNGSIPPDICSGGVLFKLILFSNNFTGSLSPS  325 (872)
Q Consensus       247 ~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~l~l~~n~~~~~~~~~  325 (872)
                      .+.     ..+ ......++..+.+.+.    ...+++|++|++++|.+. .+|.                         
T Consensus       257 ~~l-----~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~-------------------------  301 (353)
T d1jl5a_         257 SGL-----SELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA-------------------------  301 (353)
T ss_dssp             SEE-----SCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC-------------------------
T ss_pred             ccc-----ccccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc-------------------------
Confidence            421     111 2334445555544422    123456677777766654 3332                         


Q ss_pred             CCCCCCCcEEEcCCCccccccCccCCCCCCCcEEEcCCCcCCCCCCc
Q 002875          326 LSNCSSLVRLRLEDNSFSGEIPLKFSQLPDINYIDLSRNGFTGGIPT  372 (872)
Q Consensus       326 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  372 (872)
                        .+++|+.|++++|+|+. +|.   .+++|++|++++|+++ .+|.
T Consensus       302 --~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         302 --LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             --CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             --ccCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC-CCCc
Confidence              24567777887777763 343   2456778888888776 3443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.4e-17  Score=164.60  Aligned_cols=188  Identities=21%  Similarity=0.334  Sum_probs=112.4

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccC
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAG   99 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~   99 (872)
                      +..++++.+.+....  .+..+.+|++|++++|.|+..  +.+..+++|++|++++|.+++..  .+.++++|+++++++
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccc
Confidence            445677777776543  456778889999998888754  35888899999999988887543  378888888888888


Q ss_pred             CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC
Q 002875          100 SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP  179 (872)
Q Consensus       100 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  179 (872)
                      |.++. + ..|.++++|++|+++++...+.  ..+...+.+..+.++.+.+....  .+.++.+|+.|++++|.+.+.  
T Consensus        95 n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--  166 (227)
T d1h6ua2          95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--  166 (227)
T ss_dssp             CCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--
T ss_pred             ccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--
Confidence            88763 3 3577888888888888876532  22444455555555444433211  133444445555544444321  


Q ss_pred             ccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCc
Q 002875          180 KELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLS  223 (872)
Q Consensus       180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  223 (872)
                      ..++.+++|+.|++++|++++..  .+..+++|++|++++|+++
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCC
T ss_pred             hhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCC
Confidence            12344444444444444443321  2344444444444444444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.3e-17  Score=168.55  Aligned_cols=219  Identities=13%  Similarity=0.143  Sum_probs=141.6

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCcccc-CccccCCCCCCEEEccC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV-PAEISQLEHLKVLNLAG   99 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~-p~~~~~L~~L~~L~L~~   99 (872)
                      ++++.++..++. +|..+.  +++++|+|++|+|..+.+.+|.++++|++|++++|.+...+ +.+|.+++++++|++..
T Consensus        11 ~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            577778888774 455543  57889999999988777778889999999999998876544 44688888999888764


Q ss_pred             -CcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccC
Q 002875          100 -SYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSI  178 (872)
Q Consensus       100 -n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~  178 (872)
                       |.+....+..|.++++|++|++++|.+....+  +..+..                     +..+..+..+++.+....
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~~---------------------l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHS---------------------LQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTTCB---------------------SSCEEEEEESCTTCCEEC
T ss_pred             cccccccccccccccccccccccchhhhccccc--cccccc---------------------cccccccccccccccccc
Confidence             56777777888889999999998888754322  222222                     222333333344444333


Q ss_pred             CccCcCCC-CCCEEEccCCCCcccCCcccccCCCCCE-EeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccC
Q 002875          179 PKELSNLT-KLESLFLFRNQLAGQVPWEFSRVTTLKS-LDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQ  256 (872)
Q Consensus       179 p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  256 (872)
                      +..+..++ .++.|+++.|+++...+..|.. +++++ +++++|+++...+..|.++++|++|++++|+++...+..|.+
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             ccccccccccceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence            34444433 5666666666666554444433 33333 345666666544555677777777777777777555555666


Q ss_pred             CCCcceeecc
Q 002875          257 LPSLEILFIW  266 (872)
Q Consensus       257 l~~L~~L~l~  266 (872)
                      +++|+.+++.
T Consensus       224 l~~L~~l~~~  233 (242)
T d1xwdc1         224 LKKLRARSTY  233 (242)
T ss_dssp             CCEEESSSEE
T ss_pred             CcccccCcCC
Confidence            6666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9e-17  Score=162.35  Aligned_cols=221  Identities=14%  Similarity=0.059  Sum_probs=137.6

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCccccc-CCcccCCCCCCcEeeCcc
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGP-IPSQFGSFKSLEFLHLAG  123 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~  123 (872)
                      +.++.+++.++ .+|+.+-  +++++||+++|.++...+.+|.++++|++|++++|.+... .+..|.+++++++|.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34455554444 2332221  3445555555555433333455555555555555544332 233444455555544432


Q ss_pred             CcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCC-ccCcCCCCCCEEEccCCCCcccC
Q 002875          124 NLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIP-KELSNLTKLESLFLFRNQLAGQV  202 (872)
Q Consensus       124 n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~  202 (872)
                                             .|.+....+..+.++++|++|++++|.+....+ ..+..++.+..+...++.+....
T Consensus        88 -----------------------~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          88 -----------------------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             -----------------------CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             -----------------------cccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence                                   123333445556777888888888887764322 23445566666777788888777


Q ss_pred             CcccccCC-CCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecccccccccCCccCCCC
Q 002875          203 PWEFSRVT-TLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIWNNYFSGSLPENLGRN  281 (872)
Q Consensus       203 ~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~  281 (872)
                      +..|..++ .++.|++++|+++...+..|.....++.+++++|+++...+..|..+++|++|++++|+++...+..|..+
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             ccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence            77777664 78899999999986655555443334455678888986666678999999999999999996666677787


Q ss_pred             CCCcEEecCC
Q 002875          282 SKLRWVDVST  291 (872)
Q Consensus       282 ~~L~~L~ls~  291 (872)
                      ..|+.+++.+
T Consensus       225 ~~L~~l~~~~  234 (242)
T d1xwdc1         225 KKLRARSTYN  234 (242)
T ss_dssp             CEEESSSEES
T ss_pred             cccccCcCCC
Confidence            7777776643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.3e-16  Score=159.13  Aligned_cols=206  Identities=20%  Similarity=0.310  Sum_probs=117.1

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCc
Q 002875           43 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLA  122 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  122 (872)
                      ++..++++.+++.+..  .+..+.+|+.|++.+|.++. + ..+..+++|++|++++|.+.+..|  |..+++|++|+++
T Consensus        20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccc
Confidence            3344567777776543  45667888899999888874 3 358888899999999988876433  7888888888888


Q ss_pred             cCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccC
Q 002875          123 GNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQV  202 (872)
Q Consensus       123 ~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  202 (872)
                      +|.++..  ..+..+++|+.++++.+...+..  .+.....++.+.++++.+...  ..+...++|+.|++++|.+....
T Consensus        94 ~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~  167 (227)
T d1h6ua2          94 GNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT  167 (227)
T ss_dssp             SCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG
T ss_pred             ccccccc--ccccccccccccccccccccccc--hhccccchhhhhchhhhhchh--hhhccccccccccccccccccch
Confidence            8877542  24556666666666655443221  233444555555555544322  12334445555555555443221


Q ss_pred             CcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCcceeecc
Q 002875          203 PWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEILFIW  266 (872)
Q Consensus       203 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  266 (872)
                        .+..+++|++|++++|++++. + .++.+++|++|++++|++++..  .+..+++|+.|+++
T Consensus       168 --~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 --PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             --GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             --hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence              244445555555555544432 1 2444444555555554444321  14444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=5.5e-17  Score=157.10  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=111.8

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcc-cCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSG-HFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      .++++.++++++.+ |..+.  +++++|+|++|+|+. ..+..|..+++|+.|+|++|.+....+..|..+++|++|+|+
T Consensus        10 ~~~v~Cs~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCcc-CCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            45789999999854 55554  689999999999975 456778999999999999999998888899999999999999


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcc
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQG  152 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~  152 (872)
                      +|.+..+.|.+|.++++|++|+|++|.|+.+.+..|..+++|++|++++|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            999998888899999999999999999998888888888888888888887654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.5e-16  Score=149.92  Aligned_cols=179  Identities=23%  Similarity=0.343  Sum_probs=116.9

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS  100 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n  100 (872)
                      ..+.++.+.+++..+  ...+.++++|++++|.|...  ++++.+++|++|++++|++++..  .++++++|++|++++|
T Consensus        21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccc
Confidence            345666777665433  34567888888888887743  34777888888888888877543  2778888888888888


Q ss_pred             cccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCc
Q 002875          101 YFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPK  180 (872)
Q Consensus       101 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~  180 (872)
                      .+... + .+.++++|++|++++|.+...  .                        .+..+++|+.|++++|.+.. + +
T Consensus        95 ~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~------------------------~~~~l~~L~~L~l~~n~l~~-~-~  144 (199)
T d2omxa2          95 QIADI-T-PLANLTNLTGLTLFNNQITDI--D------------------------PLKNLTNLNRLELSSNTISD-I-S  144 (199)
T ss_dssp             CCCCC-G-GGTTCTTCSEEECCSSCCCCC--G------------------------GGTTCTTCSEEECCSSCCCC-C-G
T ss_pred             ccccc-c-ccccccccccccccccccccc--c------------------------ccchhhhhHHhhhhhhhhcc-c-c
Confidence            77642 2 477778888888877766432  1                        23345556666666666542 2 2


Q ss_pred             cCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEE
Q 002875          181 ELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLL  239 (872)
Q Consensus       181 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  239 (872)
                      .+..+++|+.|++.+|++++..  .+..+++|++|++++|+++..  +.++.+++|+.|
T Consensus       145 ~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         145 ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            4566667777777777766542  366777777777777777642  246667777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.9e-16  Score=152.02  Aligned_cols=181  Identities=27%  Similarity=0.327  Sum_probs=100.8

Q ss_pred             EEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCc
Q 002875           22 DLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSY  101 (872)
Q Consensus        22 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~  101 (872)
                      ..++..+.+.+.++.  ..+.+|++|++++|.+....  ++..+++|++|++++|.+++..  .++.+++|++|++++|.
T Consensus        28 ~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence            345566665544332  24567777777777776432  3666777777777777776432  35667777777777777


Q ss_pred             ccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCcc
Q 002875          102 FSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKE  181 (872)
Q Consensus       102 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~  181 (872)
                      ++. +| .+..+++|+.|++++|.+...                          ..+.+++.++.+++++|.+.+  +..
T Consensus       102 i~~-l~-~l~~l~~L~~L~l~~~~~~~~--------------------------~~l~~l~~l~~l~~~~n~l~~--~~~  151 (210)
T d1h6ta2         102 VKD-LS-SLKDLKKLKSLSLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITD--ITV  151 (210)
T ss_dssp             CCC-GG-GGTTCTTCCEEECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCC--CGG
T ss_pred             ccc-cc-ccccccccccccccccccccc--------------------------ccccccccccccccccccccc--ccc
Confidence            664 33 466677777777766655321                          123334445555555555442  223


Q ss_pred             CcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcc
Q 002875          182 LSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLM  242 (872)
Q Consensus       182 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  242 (872)
                      +..+++|+.+++++|++++..  .+.++++|++|++++|+++. ++ .+..+++|++|+|+
T Consensus       152 ~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         152 LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             ccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            444555555555555554322  24555555555555555543 22 35555555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=7.9e-17  Score=155.99  Aligned_cols=118  Identities=25%  Similarity=0.284  Sum_probs=108.2

Q ss_pred             cCCcchhhhcCCCCcEEECCCCCCcc-cCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCcc
Q 002875            7 ALPGKPLRIFFNELVDLNLSHNSFSG-QFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAE   85 (872)
Q Consensus         7 ~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~   85 (872)
                      +||..+    .+++++|+|++|+|+. +.+..|.++++|+.|+|++|.+....++.|..+++|++|+|++|++....|.+
T Consensus        22 ~iP~~l----p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~   97 (192)
T d1w8aa_          22 EIPRDI----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             SCCSCC----CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             ccCCCC----CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHH
Confidence            566653    3689999999999976 55678899999999999999999999999999999999999999999888889


Q ss_pred             ccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCcCCc
Q 002875           86 ISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLND  128 (872)
Q Consensus        86 ~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~  128 (872)
                      |.++++|++|+|++|.++++.|++|..+++|++|+|++|.+..
T Consensus        98 F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             HhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999999999999999999999999999999999999998854

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1e-15  Score=148.88  Aligned_cols=178  Identities=22%  Similarity=0.344  Sum_probs=124.9

Q ss_pred             EEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccCc
Q 002875           46 SLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGNL  125 (872)
Q Consensus        46 ~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  125 (872)
                      .+.++.+.+++..+  ...+.++++|++++|.++. + ..+..+++|++|+|++|.+++..|  |+++++|++|++++|.
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccc
Confidence            34555555554332  2345666667776666653 2 235666666666666666654322  6666666666666665


Q ss_pred             CCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcccCCccCcCCCCCCEEEccCCCCcccCCcc
Q 002875          126 LNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSGSIPKELSNLTKLESLFLFRNQLAGQVPWE  205 (872)
Q Consensus       126 l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~  205 (872)
                      +..                         ++ .+.+++.|+.|+++++.+...  ..+..+++|+.|++++|++...  ..
T Consensus        96 ~~~-------------------------~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~  145 (199)
T d2omxa2          96 IAD-------------------------IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA  145 (199)
T ss_dssp             CCC-------------------------CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GG
T ss_pred             ccc-------------------------cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--cc
Confidence            432                         11 256677888888888877643  4578899999999999998753  35


Q ss_pred             cccCCCCCEEeCcCCCCcCcCCccccCCCCCCEEEcccccCCCCCCccccCCCCccee
Q 002875          206 FSRVTTLKSLDLSDNRLSGPIPESFADLKNLRLLSLMYNEMSGTVPESLVQLPSLEIL  263 (872)
Q Consensus       206 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  263 (872)
                      +..+++|+.|++++|++++.  ..++++++|+.|++++|++++. + .+..+++|+.|
T Consensus       146 l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         146 LSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             ccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            88999999999999999864  3489999999999999999853 3 57888988875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.5e-15  Score=149.12  Aligned_cols=164  Identities=23%  Similarity=0.285  Sum_probs=118.7

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      +..|+.|++++|.|....  .+..+++|++|+|++|+|++..  .+..+++|++|++++|+++. +| .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            457999999999998653  4788999999999999998643  47899999999999999985 44 589999999999


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCCccCCCCCCCCEEEccCccCcccCCccccCCCCCcEEEeecCCCcc
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIPAELGMLKTVTHMEIGYNFYQGNIPWQLGNMSEVQYLDIAGANLSG  176 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~  176 (872)
                      +++|.+..  ...+..+++|+.+++++|.+++.  ..+..+++                        |+.+++++|.+.+
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~------------------------L~~l~l~~n~l~~  170 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTK------------------------LDTLSLEDNQISD  170 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTT------------------------CSEEECCSSCCCC
T ss_pred             cccccccc--ccccccccccccccccccccccc--cccccccc------------------------ccccccccccccc
Confidence            99998864  34688999999999999988642  23344444                        4455555555443


Q ss_pred             cCCccCcCCCCCCEEEccCCCCcccCCcccccCCCCCEEeCc
Q 002875          177 SIPKELSNLTKLESLFLFRNQLAGQVPWEFSRVTTLKSLDLS  218 (872)
Q Consensus       177 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  218 (872)
                      . + .+..+++|++|++++|+++.. + .+..+++|++|+|+
T Consensus       171 i-~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         171 I-V-PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             C-G-GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             c-c-cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            2 1 245555555555555555432 2 35555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.6e-19  Score=195.29  Aligned_cols=371  Identities=17%  Similarity=0.180  Sum_probs=212.1

Q ss_pred             CCcEEECCCCCCcccC-CccccCCCCCCEEECcCCcCcc----cCCccccCCCCCcEEECcCCcCccc----cCcccc-C
Q 002875           19 ELVDLNLSHNSFSGQF-PVEIFNLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFSNSFSGS----VPAEIS-Q   88 (872)
Q Consensus        19 ~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~LdL~~n~l~~~----~p~~~~-~   88 (872)
                      +|+.||+++|+++... ...+..++++++|+|++|.|+.    .+...+..+++|+.|||++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5899999999997632 3345678999999999998863    3345678899999999999988632    222232 2


Q ss_pred             CCCCCEEEccCCccccc----CCcccCCCCCCcEeeCccCcCCccCCcc----CC-CCCCCCEEEccCccCccc----CC
Q 002875           89 LEHLKVLNLAGSYFSGP----IPSQFGSFKSLEFLHLAGNLLNDQIPAE----LG-MLKTVTHMEIGYNFYQGN----IP  155 (872)
Q Consensus        89 L~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~-~L~~L~~L~l~~n~~~~~----~p  155 (872)
                      ..+|++|+|++|.++..    ++..+..+++|++|++++|.+.......    +. ..................    .-
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            35799999999998643    4567888999999999999875421111    11 112222333322221110    00


Q ss_pred             ccccCCCCCcEEEeecCCCccc----CCccC-cCCCCCCEEEccCCCCcccC----CcccccCCCCCEEeCcCCCCcC--
Q 002875          156 WQLGNMSEVQYLDIAGANLSGS----IPKEL-SNLTKLESLFLFRNQLAGQV----PWEFSRVTTLKSLDLSDNRLSG--  224 (872)
Q Consensus       156 ~~~~~l~~L~~L~ls~n~l~~~----~p~~l-~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~--  224 (872)
                      ..+.....++.++++++.....    ....+ ..-.....+++..+.+....    ...+...+.++.+++++|.+..  
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            1123345666777766654311    00001 11123445666555443211    0123345666777777666532  


Q ss_pred             ---cCCccccCCCCCCEEEcccccCCCCC----CccccCCCCcceeecccccccccCCc----c-CCCCCCCcEEecCCC
Q 002875          225 ---PIPESFADLKNLRLLSLMYNEMSGTV----PESLVQLPSLEILFIWNNYFSGSLPE----N-LGRNSKLRWVDVSTN  292 (872)
Q Consensus       225 ---~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~l~~n~l~~~~p~----~-~~~~~~L~~L~ls~n  292 (872)
                         ...........++.+++++|.+....    ...+...+.++.+++++|.+......    . ......|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               12223344556777777777654321    12234456677777777766432111    1 122345677777776


Q ss_pred             eeeecCCCC----CCCCCceeEEEcCCCcCCCC----CCCCC-CCCCCCcEEEcCCCccccc----cCccCCCCCCCcEE
Q 002875          293 NFNGSIPPD----ICSGGVLFKLILFSNNFTGS----LSPSL-SNCSSLVRLRLEDNSFSGE----IPLKFSQLPDINYI  359 (872)
Q Consensus       293 ~l~~~~p~~----~~~~~~l~~l~l~~n~~~~~----~~~~~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L  359 (872)
                      .+.......    +.....|+.|++++|++...    +...+ ...+.|++|++++|.+++.    +...+...++|++|
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence            654321111    12234567777777766431    11222 2456788899998888753    33345567888899


Q ss_pred             EcCCCcCCCCCCchhh-----hhcccccccccCCC
Q 002875          360 DLSRNGFTGGIPTDIN-----QASKLEYFNVSNNP  389 (872)
Q Consensus       360 ~Ls~N~l~~~~~~~~~-----~l~~L~~L~ls~n~  389 (872)
                      ++++|+++......+.     ....|++|++++|.
T Consensus       403 ~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            9998887632222221     22368888888874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.8e-17  Score=180.57  Aligned_cols=108  Identities=17%  Similarity=0.189  Sum_probs=70.9

Q ss_pred             CCCEEECcCCcCcccC-CccccCCCCCcEEECcCCcCcc----ccCccccCCCCCCEEEccCCccccc----CCcccC-C
Q 002875           43 SLISLDISRNNFSGHF-PGGIQSLRNLLVLDAFSNSFSG----SVPAEISQLEHLKVLNLAGSYFSGP----IPSQFG-S  112 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~LdL~~n~l~~----~~p~~~~~L~~L~~L~L~~n~~~~~----~p~~~~-~  112 (872)
                      +|++||+++|+++... .+.+..+++|++|+|++|.++.    .+...+..+++|++|||++|.++..    +.+.+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5788999999887532 2345667888899999888763    2344567788888899888887521    223332 2


Q ss_pred             CCCCcEeeCccCcCCcc----CCccCCCCCCCCEEEccCccC
Q 002875          113 FKSLEFLHLAGNLLNDQ----IPAELGMLKTVTHMEIGYNFY  150 (872)
Q Consensus       113 l~~L~~L~L~~n~l~~~----~p~~l~~L~~L~~L~l~~n~~  150 (872)
                      ..+|++|+|++|.+++.    ++..+..+++|++|++++|.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            34788888888887643    233455555566666655543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=133.39  Aligned_cols=107  Identities=21%  Similarity=0.132  Sum_probs=59.0

Q ss_pred             CCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEc
Q 002875           18 NELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNL   97 (872)
Q Consensus        18 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L   97 (872)
                      ..++.|+|++|+|+.+ +..+..+++|++|+|++|.|+..  +.|..+++|++|++++|.++...+..+..+++|++|++
T Consensus        18 ~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            3456666666666544 34445566666666666666543  23556666666666666665444434455566666666


Q ss_pred             cCCcccccCC-cccCCCCCCcEeeCccCcCC
Q 002875           98 AGSYFSGPIP-SQFGSFKSLEFLHLAGNLLN  127 (872)
Q Consensus        98 ~~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~  127 (872)
                      ++|.+..... ..+..+++|++|++++|.++
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccccccccccccccccccchhhcCCCccc
Confidence            6665543211 24555566666666666553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=7.7e-14  Score=123.23  Aligned_cols=103  Identities=27%  Similarity=0.351  Sum_probs=85.6

Q ss_pred             cEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCC
Q 002875           21 VDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGS  100 (872)
Q Consensus        21 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n  100 (872)
                      |+|+|++|+|+.. + .+..+++|++|++++|.|+. +|..|..+++|++|++++|.++. +| .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            5799999999854 3 48889999999999999984 57778999999999999999985 44 5889999999999999


Q ss_pred             cccccC-CcccCCCCCCcEeeCccCcCCc
Q 002875          101 YFSGPI-PSQFGSFKSLEFLHLAGNLLND  128 (872)
Q Consensus       101 ~~~~~~-p~~~~~l~~L~~L~L~~n~l~~  128 (872)
                      .+.... ...+..+++|++|++++|.++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            987543 2568889999999999998864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.4e-14  Score=132.26  Aligned_cols=112  Identities=19%  Similarity=0.054  Sum_probs=87.1

Q ss_pred             ccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCC
Q 002875           36 VEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKS  115 (872)
Q Consensus        36 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~  115 (872)
                      ..|.+..+||+|+|++|+|+.+ ++.+..+++|++|||++|.++..  +.|..+++|++|++++|.++...+..+..+++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence            3577888999999999999865 66778899999999999999854  35889999999999999998766666788999


Q ss_pred             CcEeeCccCcCCccCC-ccCCCCCCCCEEEccCccC
Q 002875          116 LEFLHLAGNLLNDQIP-AELGMLKTVTHMEIGYNFY  150 (872)
Q Consensus       116 L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n~~  150 (872)
                      |++|++++|.++.... ..+..+++|++|++++|.+
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cccceeccccccccccccccccccccchhhcCCCcc
Confidence            9999999999864321 2344555555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-14  Score=147.93  Aligned_cols=180  Identities=18%  Similarity=0.225  Sum_probs=75.8

Q ss_pred             CCCCcEEECcCCcCccc-cCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccC-cCCcc-CCccCCCCCCCC
Q 002875           65 LRNLLVLDAFSNSFSGS-VPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN-LLNDQ-IPAELGMLKTVT  141 (872)
Q Consensus        65 l~~L~~LdL~~n~l~~~-~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~L~~L~  141 (872)
                      ...|++||++++.++.. ++..+..+++|++|+|+++.+....+..++.+++|++|+++++ .++.. +..-...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34555555555544422 2223455555555555555554444445555555555555553 23211 011112334444


Q ss_pred             EEEccCccC-cc-cCCccccC-CCCCcEEEeecCC--Cccc-CCccCcCCCCCCEEEccCC-CCcccCCcccccCCCCCE
Q 002875          142 HMEIGYNFY-QG-NIPWQLGN-MSEVQYLDIAGAN--LSGS-IPKELSNLTKLESLFLFRN-QLAGQVPWEFSRVTTLKS  214 (872)
Q Consensus       142 ~L~l~~n~~-~~-~~p~~~~~-l~~L~~L~ls~n~--l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  214 (872)
                      +|+++++.. .. .+...+.. .++|+.|+++++.  +... +......+++|++|++++| .+++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            444443211 10 01111111 2345555555431  2111 1111223455555555543 233333334445555555


Q ss_pred             EeCcCC-CCcCcCCccccCCCCCCEEEcccc
Q 002875          215 LDLSDN-RLSGPIPESFADLKNLRLLSLMYN  244 (872)
Q Consensus       215 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n  244 (872)
                      |++++| .++......++.+++|+.|+++++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            555553 343333334444555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.1e-14  Score=144.93  Aligned_cols=237  Identities=16%  Similarity=0.216  Sum_probs=163.9

Q ss_pred             hhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCccc-CCccccCCCCCcEEECcCCcCccccCccccCCCC
Q 002875           13 LRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGH-FPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEH   91 (872)
Q Consensus        13 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~   91 (872)
                      .+..-..+..+.+++..+.... .......+|++|||+++.+... ++..+..+++|++|+++++.++...+..+.++++
T Consensus        18 ~~l~~~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~   96 (284)
T d2astb2          18 GRLLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN   96 (284)
T ss_dssp             HHHHHTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred             HHHHhccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCC
Confidence            3443356778888877765433 3345677999999999988643 3455789999999999999998878888999999


Q ss_pred             CCEEEccCC-ccccc-CCcccCCCCCCcEeeCccCc-CCcc-CCccCCC-CCCCCEEEccCcc--Ccc-cCCccccCCCC
Q 002875           92 LKVLNLAGS-YFSGP-IPSQFGSFKSLEFLHLAGNL-LNDQ-IPAELGM-LKTVTHMEIGYNF--YQG-NIPWQLGNMSE  163 (872)
Q Consensus        92 L~~L~L~~n-~~~~~-~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~-L~~L~~L~l~~n~--~~~-~~p~~~~~l~~  163 (872)
                      |++|+++++ .++.. +...+.++++|++|+++++. +++. +...+.. .+.|+.|+++++.  +.. .+.....++++
T Consensus        97 L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~  176 (284)
T d2astb2          97 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  176 (284)
T ss_dssp             CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             CcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccc
Confidence            999999996 44421 12224578999999999864 4321 1222333 4689999998642  221 12233456889


Q ss_pred             CcEEEeecCC-CcccCCccCcCCCCCCEEEccCC-CCcccCCcccccCCCCCEEeCcCCCCcCc-CCccccCCCCCCEEE
Q 002875          164 VQYLDIAGAN-LSGSIPKELSNLTKLESLFLFRN-QLAGQVPWEFSRVTTLKSLDLSDNRLSGP-IPESFADLKNLRLLS  240 (872)
Q Consensus       164 L~~L~ls~n~-l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~  240 (872)
                      |++|++++|. +++.....+..+++|++|++++| .+++.....+..+++|+.|+++++ ++.. .+.....+++|+   
T Consensus       177 L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---  252 (284)
T d2astb2         177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---  252 (284)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---
T ss_pred             ccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---
Confidence            9999999864 77777788889999999999995 676655566888999999999987 3321 122223455554   


Q ss_pred             cccccCCCCCCccc
Q 002875          241 LMYNEMSGTVPESL  254 (872)
Q Consensus       241 L~~n~l~~~~p~~l  254 (872)
                      +..+.++...++.+
T Consensus       253 i~~~~ls~~~~~~~  266 (284)
T d2astb2         253 INCSHFTTIARPTI  266 (284)
T ss_dssp             ESCCCSCCTTCSSC
T ss_pred             ccCccCCCCCCCcc
Confidence            34555554444333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=8.3e-13  Score=116.44  Aligned_cols=101  Identities=17%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             CEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccCCcccCCCCCCcEeeCccC
Q 002875           45 ISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPIPSQFGSFKSLEFLHLAGN  124 (872)
Q Consensus        45 ~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  124 (872)
                      |+|+|++|+|+. ++ .+..+++|++||+++|.++ .+|..|+.+++|++|++++|.++.. | .|+++++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            689999999984 34 4888999999999999997 5677888999999999999998853 4 5889999999999999


Q ss_pred             cCCccCC-ccCCCCCCCCEEEccCccC
Q 002875          125 LLNDQIP-AELGMLKTVTHMEIGYNFY  150 (872)
Q Consensus       125 ~l~~~~p-~~l~~L~~L~~L~l~~n~~  150 (872)
                      +++.... ..+..+++|+.|++++|.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            8865322 3344445555555544443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=1.2e-13  Score=146.82  Aligned_cols=235  Identities=18%  Similarity=0.197  Sum_probs=127.8

Q ss_pred             ccCCCCCCEEECcCCcCcc----cCCccccCCCCCcEEECcCCcCccc----------cCccccCCCCCCEEEccCCccc
Q 002875           38 IFNLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFSNSFSGS----------VPAEISQLEHLKVLNLAGSYFS  103 (872)
Q Consensus        38 ~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~LdL~~n~l~~~----------~p~~~~~L~~L~~L~L~~n~~~  103 (872)
                      +.....|++|+|++|.|..    .+...+...++|+.|+++++.....          +...+...++|++|+|++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            3345555555555555432    1122344455555555554432211          1112334455566666555554


Q ss_pred             cc----CCcccCCCCCCcEeeCccCcCCccCCc-------------cCCCCCCCCEEEccCccCcc----cCCccccCCC
Q 002875          104 GP----IPSQFGSFKSLEFLHLAGNLLNDQIPA-------------ELGMLKTVTHMEIGYNFYQG----NIPWQLGNMS  162 (872)
Q Consensus       104 ~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~-------------~l~~L~~L~~L~l~~n~~~~----~~p~~~~~l~  162 (872)
                      ..    +...+...++|++|++++|.+......             .....+.|+.+.++.|.+..    .+...+....
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence            32    122233445566666655554211000             01234456666666654431    1223344567


Q ss_pred             CCcEEEeecCCCccc-----CCccCcCCCCCCEEEccCCCCccc----CCcccccCCCCCEEeCcCCCCcCcCCc----c
Q 002875          163 EVQYLDIAGANLSGS-----IPKELSNLTKLESLFLFRNQLAGQ----VPWEFSRVTTLKSLDLSDNRLSGPIPE----S  229 (872)
Q Consensus       163 ~L~~L~ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~----~  229 (872)
                      .|+.|++++|.+...     +...+...++|+.|++++|.+...    +...+..+++|++|+|++|.++.....    .
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence            788888888877532     234456677888888888887532    223456778888888888887643222    2


Q ss_pred             ccC--CCCCCEEEcccccCCCC----CCcccc-CCCCcceeecccccccc
Q 002875          230 FAD--LKNLRLLSLMYNEMSGT----VPESLV-QLPSLEILFIWNNYFSG  272 (872)
Q Consensus       230 ~~~--l~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~l~~n~l~~  272 (872)
                      +..  .+.|+.|++++|++...    +...+. ++++|+.|++++|.+..
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            222  35688888888887642    222232 46788888998888753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.31  E-value=8e-14  Score=148.29  Aligned_cols=236  Identities=14%  Similarity=0.156  Sum_probs=119.6

Q ss_pred             ccccCCCCCcEEECcCCcCccc----cCccccCCCCCCEEEccCCccccc----------CCcccCCCCCCcEeeCccCc
Q 002875           60 GGIQSLRNLLVLDAFSNSFSGS----VPAEISQLEHLKVLNLAGSYFSGP----------IPSQFGSFKSLEFLHLAGNL  125 (872)
Q Consensus        60 ~~~~~l~~L~~LdL~~n~l~~~----~p~~~~~L~~L~~L~L~~n~~~~~----------~p~~~~~l~~L~~L~L~~n~  125 (872)
                      ..+.....|+.|+|++|.+...    +-..+...++|+.|+++++.....          +...+...++|+.|+|++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455566666666666665422    122345556666666665543211          11234455666666666666


Q ss_pred             CCcc----CCccCCCCCCCCEEEccCccCcccCC-------------ccccCCCCCcEEEeecCCCccc----CCccCcC
Q 002875          126 LNDQ----IPAELGMLKTVTHMEIGYNFYQGNIP-------------WQLGNMSEVQYLDIAGANLSGS----IPKELSN  184 (872)
Q Consensus       126 l~~~----~p~~l~~L~~L~~L~l~~n~~~~~~p-------------~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~  184 (872)
                      +...    +...+...++|++|++++|.+...-.             ........|+.+++++|.+...    +...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            5442    22223345666666666664321100             0012345666666666655421    1222334


Q ss_pred             CCCCCEEEccCCCCccc-----CCcccccCCCCCEEeCcCCCCcCc----CCccccCCCCCCEEEcccccCCCCCC----
Q 002875          185 LTKLESLFLFRNQLAGQ-----VPWEFSRVTTLKSLDLSDNRLSGP----IPESFADLKNLRLLSLMYNEMSGTVP----  251 (872)
Q Consensus       185 l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p----  251 (872)
                      .+.|+.|+++.|.+...     +...+..+++|+.|++++|.++..    +...+...++|+.|++++|.+.+.-.    
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            55666666666666431     122345556666666666665422    22344556666666666666653211    


Q ss_pred             cccc--CCCCcceeeccccccccc----CCccCC-CCCCCcEEecCCCeee
Q 002875          252 ESLV--QLPSLEILFIWNNYFSGS----LPENLG-RNSKLRWVDVSTNNFN  295 (872)
Q Consensus       252 ~~l~--~l~~L~~L~l~~n~l~~~----~p~~~~-~~~~L~~L~ls~n~l~  295 (872)
                      +.+.  ..+.|++|++++|.+...    +...+. +.+.|+.|++++|.+.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            1121  124566666666665432    111121 3455666666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.3e-11  Score=110.02  Aligned_cols=105  Identities=18%  Similarity=0.114  Sum_probs=78.1

Q ss_pred             CcEEECCCCCCcccCCccccCCCCCCEEECcCC-cCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEcc
Q 002875           20 LVDLNLSHNSFSGQFPVEIFNLTSLISLDISRN-NFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLA   98 (872)
Q Consensus        20 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~   98 (872)
                      ...++.+++.+.. .|..+..+++|++|++++| .|+.+.+++|.++++|+.|++++|+++.+.|.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            4557777777753 4667778888888888655 4777767778888888888888888887777778888888888888


Q ss_pred             CCcccccCCcccCCCCCCcEeeCccCcC
Q 002875           99 GSYFSGPIPSQFGSFKSLEFLHLAGNLL  126 (872)
Q Consensus        99 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l  126 (872)
                      +|.++...+..|..+ +|+.|+|++|.+
T Consensus        89 ~N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             CCCCcccChhhhccc-cccccccCCCcc
Confidence            888875555555444 678888888766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=1.4e-13  Score=132.67  Aligned_cols=126  Identities=16%  Similarity=0.170  Sum_probs=80.6

Q ss_pred             CCcEEECCCC--CCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEE
Q 002875           19 ELVDLNLSHN--SFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLN   96 (872)
Q Consensus        19 ~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~   96 (872)
                      ..+.++++.+  .+. ..+.++..+++|++|+|++|+|+.+ + .|..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            3455566543  232 3345677788888888888887743 3 4777888888888888776 3454445556788888


Q ss_pred             ccCCcccccCCcccCCCCCCcEeeCccCcCCccCC-ccCCCCCCCCEEEccCccC
Q 002875           97 LAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQIP-AELGMLKTVTHMEIGYNFY  150 (872)
Q Consensus        97 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~l~~n~~  150 (872)
                      +++|.++..  +.+..+++|++|++++|+++.... ..+..+++|+.|++++|.+
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            888877643  346777788888888887754321 2345555555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.8e-11  Score=109.13  Aligned_cols=106  Identities=17%  Similarity=0.145  Sum_probs=55.1

Q ss_pred             ccccccccccCCCCCCCCcCCccceeecccc-ccCCCCCCcccccccCcEEEccCccceeccchhccCCCCCCEEECCCC
Q 002875          406 QNFSASACNITGNLPPFKSCKSISVIESHMN-NLSGTIPESVSNCVELERIDLANNKLIGSIPEVLARLPVLGVLDLSHN  484 (872)
Q Consensus       406 ~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  484 (872)
                      +.+..+++.++..+..+..+++++.+++.+| .++...+..|.++++|+.|+|++|+++.+.+.+|..+++|++|+|++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3344444444443333444555555555433 244433445555555555555555555555555555555555555555


Q ss_pred             ccccccCccccCCCCCcEEECcCCeeee
Q 002875          485 SLSGQIPAKFGSCSSLTVLNVSFNDISG  512 (872)
Q Consensus       485 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~  512 (872)
                      +|+.+.+..|..+ +|+.|+|++|++..
T Consensus        91 ~l~~l~~~~~~~~-~l~~L~L~~Np~~C  117 (156)
T d2ifga3          91 ALESLSWKTVQGL-SLQELVLSGNPLHC  117 (156)
T ss_dssp             CCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred             CCcccChhhhccc-cccccccCCCcccC
Confidence            5555444444433 45555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=1.6e-13  Score=132.34  Aligned_cols=120  Identities=23%  Similarity=0.231  Sum_probs=98.0

Q ss_pred             CcccCCc------chhhhcCCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCc
Q 002875            4 LSGALPG------KPLRIFFNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNS   77 (872)
Q Consensus         4 ~~~~~~~------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~   77 (872)
                      +.|.+|+      .+..  +++|+.|+|++|+|+.+ + .+..+++|++|+|++|.|.. +|..+..++.|++|++++|.
T Consensus        30 l~~~~~~i~~l~~sl~~--L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          30 LHGMIPPIEKMDATLST--LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CCBCCTTCCCCHHHHHH--TTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEE
T ss_pred             eecccCchhhhhhHHhc--ccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccccccccc
Confidence            4555554      4556  89999999999999865 3 58899999999999999974 56566667789999999999


Q ss_pred             CccccCccccCCCCCCEEEccCCcccccCC-cccCCCCCCcEeeCccCcCCccC
Q 002875           78 FSGSVPAEISQLEHLKVLNLAGSYFSGPIP-SQFGSFKSLEFLHLAGNLLNDQI  130 (872)
Q Consensus        78 l~~~~p~~~~~L~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~  130 (872)
                      ++..  ..+..+++|++|+|++|.++.... ..|..+++|++|+|++|.+....
T Consensus       105 i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         105 IASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             CCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             cccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            9853  358889999999999999975422 46899999999999999886543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.3e-08  Score=93.85  Aligned_cols=108  Identities=19%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             CCCCcEEECCCCCCcccCCccccCCCCCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCcccc--CccccCCCCCCE
Q 002875           17 FNELVDLNLSHNSFSGQFPVEIFNLTSLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSV--PAEISQLEHLKV   94 (872)
Q Consensus        17 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~--p~~~~~L~~L~~   94 (872)
                      -...+.|++++++..    ..+..+..+..++..+|.+. .++..+..+++|++|||++|+++...  +..+..+++|++
T Consensus        21 ~~~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~   95 (162)
T d1koha1          21 DGSQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI   95 (162)
T ss_dssp             CSSSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCC
T ss_pred             chhhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccc
Confidence            345677777766532    23444555555555544433 34445567788888888888887542  334667788888


Q ss_pred             EEccCCcccccCCcccCCCCCCcEeeCccCcCCcc
Q 002875           95 LNLAGSYFSGPIPSQFGSFKSLEFLHLAGNLLNDQ  129 (872)
Q Consensus        95 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  129 (872)
                      |+|++|.+....+-.+....+|+.|++++|.+...
T Consensus        96 L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          96 LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             cccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            88888888754443444455778888888877643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=5.6e-08  Score=89.38  Aligned_cols=103  Identities=17%  Similarity=0.087  Sum_probs=62.5

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCCcEEECcCCcCccccCccccCCCCCCEEEccCCcccccC--CcccCCCCCCcEee
Q 002875           43 SLISLDISRNNFSGHFPGGIQSLRNLLVLDAFSNSFSGSVPAEISQLEHLKVLNLAGSYFSGPI--PSQFGSFKSLEFLH  120 (872)
Q Consensus        43 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~LdL~~n~l~~~~p~~~~~L~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~  120 (872)
                      ..+.|+++++...    ..+..+..+..++..++... .++..+..+++|++|+|++|.++...  +..+..+++|++|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            4566777765432    23444555555555554433 44455567889999999999987542  35567889999999


Q ss_pred             CccCcCCccCCccCCCCCCCCEEEccCccC
Q 002875          121 LAGNLLNDQIPAELGMLKTVTHMEIGYNFY  150 (872)
Q Consensus       121 L~~n~l~~~~p~~l~~L~~L~~L~l~~n~~  150 (872)
                      |++|.++...+-.+.....|+.|++++|.+
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             cccCccccchhhhhhhccccceeecCCCCc
Confidence            999988754332222223344444444443

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.93  E-value=2.3e-05  Score=77.89  Aligned_cols=132  Identities=18%  Similarity=0.066  Sum_probs=87.9

Q ss_pred             cCCCC-CceeeeecCCCcEEEEEEeeccc-hhHHHHHHHHHHhhccC-CCCceeEEEEEecCCeeEEEEcccCCCChHHH
Q 002875          617 ARPQS-AAGCKAVLPTGITVSVKKIEWGA-TRIKIVSEFITRIGTVR-HKNLIRLLGFCYNRHQAYLLYDYLPNGNLSEK  693 (872)
Q Consensus       617 g~g~~-~~v~~~~~~~g~~vavK~~~~~~-~~~~~~~~e~~~l~~l~-H~niv~l~~~~~~~~~~~lv~ey~~~g~L~~~  693 (872)
                      .+|.. +.||+... +++.+.||+..... .....+.+|...+..+. +--+-++++++.+++..++||||.+|..+.+.
T Consensus        22 ~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~  100 (263)
T d1j7la_          22 TEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEE  100 (263)
T ss_dssp             SCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHH
T ss_pred             CCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEeccccccccc
Confidence            34443 57898764 56667888876432 22334566777766553 32245677888888899999999999888765


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHhhCC----------------------------------------------------
Q 002875          694 IRTKRDWAAKYKIVLGVARGLCFLHHDC----------------------------------------------------  721 (872)
Q Consensus       694 l~~~~~~~~~~~i~~~i~~gl~~lH~~~----------------------------------------------------  721 (872)
                      ......   ...++.++++.++.||+..                                                    
T Consensus       101 ~~~~~~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (263)
T d1j7la_         101 YEDEQS---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTE  177 (263)
T ss_dssp             TTTCSC---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHHHHHHHS
T ss_pred             cccccc---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHhc
Confidence            443222   2234555555566665421                                                    


Q ss_pred             ----CCCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          722 ----YPAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       722 ----~~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                          .+.++|+|+.|.||++++++.+-|.||+.+.
T Consensus       178 ~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         178 KPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             CCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             CCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                1237899999999999987667799999764

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.72  E-value=1.8e-05  Score=78.35  Aligned_cols=135  Identities=17%  Similarity=0.116  Sum_probs=82.0

Q ss_pred             ccCCCC-CceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCC--CCceeEEEEEecCCeeEEEEcccCCCChHH
Q 002875          616 AARPQS-AAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRH--KNLIRLLGFCYNRHQAYLLYDYLPNGNLSE  692 (872)
Q Consensus       616 ~g~g~~-~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H--~niv~l~~~~~~~~~~~lv~ey~~~g~L~~  692 (872)
                      +..|.. +.||+...++|..+.+|.-..+.  ...+..|...++.+..  --+.++++++.+++..++||||++|-++.+
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~--~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~~   95 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGA--LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS   95 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETTT
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCccC--HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccccc
Confidence            344544 57899998888889999865432  2345666776665543  235567888888889999999999866533


Q ss_pred             H-----------------hhCC--------CCHHHHHH-----H---------------HHHHHHHHHHHhhC----CCC
Q 002875          693 K-----------------IRTK--------RDWAAKYK-----I---------------VLGVARGLCFLHHD----CYP  723 (872)
Q Consensus       693 ~-----------------l~~~--------~~~~~~~~-----i---------------~~~i~~gl~~lH~~----~~~  723 (872)
                      .                 ++..        ..+.....     +               .......+..+...    ..+
T Consensus        96 ~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  175 (255)
T d1nd4a_          96 SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDL  175 (255)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCE
T ss_pred             ccccHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHHhCCccCCc
Confidence            1                 1100        01110000     0               00011122222221    112


Q ss_pred             CcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          724 AIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       724 ~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      .++|+|+.|.||+++.+..+-|.||+.+.
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            47999999999999987667899999763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.33  E-value=3.4e-05  Score=70.56  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=37.8

Q ss_pred             CCCcEEECCCC-CCccc----CCccccCCCCCCEEECcCCcCcc----cCCccccCCCCCcEEECcCCcCcccc----Cc
Q 002875           18 NELVDLNLSHN-SFSGQ----FPVEIFNLTSLISLDISRNNFSG----HFPGGIQSLRNLLVLDAFSNSFSGSV----PA   84 (872)
Q Consensus        18 ~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~LdL~~n~l~~~~----p~   84 (872)
                      +.|+.|+|+++ .++..    +-.++...+.|++|+|++|.+..    .+.+.+...+.|+.|++++|.+....    -.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            45666666543 34321    11233445556666666655542    11123334455555555555544211    11


Q ss_pred             cccCCCCCCEEEccCCc
Q 002875           85 EISQLEHLKVLNLAGSY  101 (872)
Q Consensus        85 ~~~~L~~L~~L~L~~n~  101 (872)
                      ++..-+.|++|+|++|.
T Consensus        95 aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          95 STLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTTTCCCSEEECCCCS
T ss_pred             HHHhCCcCCEEECCCCc
Confidence            23344445555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.20  E-value=6.4e-05  Score=68.63  Aligned_cols=89  Identities=13%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             cCCCCCCEEECcCC-cCccc----CCccccCCCCCcEEECcCCcCccccC----ccccCCCCCCEEEccCCccccc----
Q 002875           39 FNLTSLISLDISRN-NFSGH----FPGGIQSLRNLLVLDAFSNSFSGSVP----AEISQLEHLKVLNLAGSYFSGP----  105 (872)
Q Consensus        39 ~~l~~L~~L~Ls~N-~i~~~----~~~~~~~l~~L~~LdL~~n~l~~~~p----~~~~~L~~L~~L~L~~n~~~~~----  105 (872)
                      .+.++|++|+|+++ .+...    +-.++...+.|++|+|++|.+.....    ..+...+.|++|+|++|.+...    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34678899999874 45421    23356677888888888888763222    2344567788888888877542    


Q ss_pred             CCcccCCCCCCcEeeCccCcCC
Q 002875          106 IPSQFGSFKSLEFLHLAGNLLN  127 (872)
Q Consensus       106 ~p~~~~~l~~L~~L~L~~n~l~  127 (872)
                      +-.++...+.|++|++++|.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence            2334666677888888777653

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.79  E-value=0.0015  Score=68.22  Aligned_cols=75  Identities=9%  Similarity=-0.057  Sum_probs=46.9

Q ss_pred             hhhccCCCCCceeeeecCC-CcEEEEEEeecc--------chhHHHHHHHHHHhhccC---CCCceeEEEEEecCCeeEE
Q 002875          613 CEEAARPQSAAGCKAVLPT-GITVSVKKIEWG--------ATRIKIVSEFITRIGTVR---HKNLIRLLGFCYNRHQAYL  680 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~-g~~vavK~~~~~--------~~~~~~~~~e~~~l~~l~---H~niv~l~~~~~~~~~~~l  680 (872)
                      .+.+|.|....||+....+ |+.|.||.-...        ....+....|.+.++.+.   ...+.+++.+  +++..++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            4568999999999998755 678999975321        011233445666666542   2345566655  4455689


Q ss_pred             EEcccCCCC
Q 002875          681 LYDYLPNGN  689 (872)
Q Consensus       681 v~ey~~~g~  689 (872)
                      ||||+++..
T Consensus       109 vmE~L~~~~  117 (392)
T d2pula1         109 VMEDLSHLK  117 (392)
T ss_dssp             EECCCTTSE
T ss_pred             EEeccCCcc
Confidence            999998754

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0035  Score=63.58  Aligned_cols=68  Identities=4%  Similarity=-0.136  Sum_probs=47.8

Q ss_pred             CceeeeecCCCcEEEEEEeeccchhHHHHHHHHHHhhccCCCCc--eeEEE-----EEecCCeeEEEEcccCCCC
Q 002875          622 AAGCKAVLPTGITVSVKKIEWGATRIKIVSEFITRIGTVRHKNL--IRLLG-----FCYNRHQAYLLYDYLPNGN  689 (872)
Q Consensus       622 ~~v~~~~~~~g~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~ni--v~l~~-----~~~~~~~~~lv~ey~~~g~  689 (872)
                      -.||+...++|+.|++|.-..+....+.+.+|...+..+....|  +....     .....+..+.|++|++|..
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~  110 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQ  110 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEE
T ss_pred             ceeEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcC
Confidence            47999999999999999988776667778888888876653222  11111     1233567889999998733

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.20  E-value=0.00053  Score=62.20  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=42.5

Q ss_pred             cCCCCCCEEECcC-CcCcc----cCCccccCCCCCcEEECcCCcCccccC----ccccCCCCCCEEEccCCccccc----
Q 002875           39 FNLTSLISLDISR-NNFSG----HFPGGIQSLRNLLVLDAFSNSFSGSVP----AEISQLEHLKVLNLAGSYFSGP----  105 (872)
Q Consensus        39 ~~l~~L~~L~Ls~-N~i~~----~~~~~~~~l~~L~~LdL~~n~l~~~~p----~~~~~L~~L~~L~L~~n~~~~~----  105 (872)
                      .+.+.|++|+|++ +.++.    .+-.++...++|+.|++++|.+....-    ..+...+.|+.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3445666666665 33421    122334456666666666666543211    2234456666666666665321    


Q ss_pred             CCcccCCCCCCcEeeC
Q 002875          106 IPSQFGSFKSLEFLHL  121 (872)
Q Consensus       106 ~p~~~~~l~~L~~L~L  121 (872)
                      +...+...++|+.++|
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            2234555666665444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.15  E-value=0.0005  Score=62.41  Aligned_cols=109  Identities=15%  Similarity=0.081  Sum_probs=77.5

Q ss_pred             CCCCcEEECCC-CCCcccC----CccccCCCCCCEEECcCCcCccc----CCccccCCCCCcEEECcCCcCccc----cC
Q 002875           17 FNELVDLNLSH-NSFSGQF----PVEIFNLTSLISLDISRNNFSGH----FPGGIQSLRNLLVLDAFSNSFSGS----VP   83 (872)
Q Consensus        17 ~~~L~~L~L~~-n~i~~~~----~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~LdL~~n~l~~~----~p   83 (872)
                      -+.|+.|+|++ +.|+...    -.++...++|++|+|++|.+...    +...+...+.++.+++++|.+...    +-
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            57899999997 5565322    23456889999999999988642    234567789999999999987633    22


Q ss_pred             ccccCCCCCCEEEcc--CCcccc----cCCcccCCCCCCcEeeCccCc
Q 002875           84 AEISQLEHLKVLNLA--GSYFSG----PIPSQFGSFKSLEFLHLAGNL  125 (872)
Q Consensus        84 ~~~~~L~~L~~L~L~--~n~~~~----~~p~~~~~l~~L~~L~L~~n~  125 (872)
                      ..+...++|+.++|+  +|.+..    .+.+.+...+.|+.|+++.+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            456778899986665  555532    233455677888888887664

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.83  E-value=0.028  Score=58.39  Aligned_cols=73  Identities=14%  Similarity=0.040  Sum_probs=47.0

Q ss_pred             hhhccCCCCCceeeeecCCC--------cEEEEEEeeccchhHHHHHHHHHHhhccCCCCce-eEEEEEecCCeeEEEEc
Q 002875          613 CEEAARPQSAAGCKAVLPTG--------ITVSVKKIEWGATRIKIVSEFITRIGTVRHKNLI-RLLGFCYNRHQAYLLYD  683 (872)
Q Consensus       613 ~~~~g~g~~~~v~~~~~~~g--------~~vavK~~~~~~~~~~~~~~e~~~l~~l~H~niv-~l~~~~~~~~~~~lv~e  683 (872)
                      .+.++.|-.-.+|+...+++        +.|.+++.. +........+|..+++.+.-.+++ ++++++.+    .+|||
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I~e  121 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEE  121 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEEC
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-CcchhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----ceEEE
Confidence            45567777788999876543        456666654 222333456778888777544554 67777743    68999


Q ss_pred             ccCCCCh
Q 002875          684 YLPNGNL  690 (872)
Q Consensus       684 y~~~g~L  690 (872)
                      |++|-.+
T Consensus       122 fi~g~~l  128 (395)
T d1nw1a_         122 YIPSRPL  128 (395)
T ss_dssp             CCCEEEC
T ss_pred             EeccccC
Confidence            9987444

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.40  E-value=0.021  Score=57.30  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=26.6

Q ss_pred             CCcccCCCCCCCeeeCCCCCeeEccccccc
Q 002875          723 PAIPHGDLKASNIVFDENMEPHLAEFGFKY  752 (872)
Q Consensus       723 ~~i~Hrdlk~~Nill~~~~~~ki~dfg~~~  752 (872)
                      .++||+|+.+.||+++.+...-|.||+.+.
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccCCcchhhhhcccccceeEecccccc
Confidence            379999999999999988777899999763