Citrus Sinensis ID: 002886

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870
MGAVQQQLLQQLKASAANSQRVEEAAQRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKAQELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGSGFLGPSINGNLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTNLLQAVGQFNGHYIIIVAVMSTASSLESSKLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVDQAHDRILSSEKEGCEHQESAAVANSNPVILDLTKNDDEIDAMSTGEIEDVKPDLHSQPVSTNLTMPSELISTVQADQNFVTTDDDFWAGILYPDGSASSDARSDGQTVGGVSAPSSTSFMVSPVLTDAISPAFNREVDALGYTHLTTPVMQSLCSAPNNLQIQQTQLMNPSVNYEYGRSAVARHLNRTPMAVQALPAASHGFSDMEQQQRISRSHMNTVLGSDIASSPLQHQSAAQAVGLQASSALSGAYRVSSGLSTNNQISHQQHQALNPRMPPLMSQSTSAAQSSSPYSRTPQQGSVQVGSGHPAINESRQHARLMAIAQRPLSRPQMTRQPPTVPVQVQTPSAGPRYPTTSVGVRGSVGDQRENVGGSMQSVMIDNPTDFPLEQNWRPTGRMRGSLSGRAYSDALSHMMILPTQPVAQPARPQLSPPPHLSVPNQLQALLGNSNTRFPQLQTNPVTDPGSRVSGTRPERSHGMH
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHHEccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHcccccccEEEcccccEEEEEEEEccccccccccEEEEEEEEcccccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHcccccccccccEEEcccEEEEcccccccEEccccccccccccccccHHHHHHHHcccccccccccccccccccEEEEHHHHHHHHHHcccccEEEEcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEHHHEcccccccccccEEEEEEEEEccccccccEEEEEEEEEccccccccccccccccEEEEccccccccccccccccccccccccHHccccccEEEEEEccccEEEEEEEEEccHHHHHHcccHHHHHHHHHccccccHHEEccEEEEEEcccccEEEEEcccccccccccEccHHHHHHHHccccccEcccccccccHHHEEEcHHHHHHHHHccccccEEEEcccccEEEcccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHEEccccccccccccccccccccccccccccccccccc
MGAVQQQLLQQLKASAANSQRVEEAAQRLAAYVLLPDHQNVREFFSLCLFLSRGIdyavannevppkaqeLPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADeigsgflgpsingnlvsTVSTIMTRFYPLLKMGQILASlevepgygafmIDFHISKNMIQSTEEKIRLFVAqtdktetsacvispqhvnfilngkgierrtnvfmdpgpqlptnvspmLKYGTNLLQAVGQFNGHYIIIVAVMSTASSLESSKLQDYVQSgitmqdsdsdliegpsrislncpisykrintpvkghscrhhqcfdfsnyvhinsrrpswrcphcnqhvcytdirVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVDQAHDRILSsekegcehqesaavansnpvildltknddeidamstgeiedvkpdlhsqpvstnltmpselISTVqadqnfvttdddfwagilypdgsassdarsdgqtvggvsapsstsfmvspvltdaispafnrevdalgythlttpvmqslcsapnnlqiqqtqlmnpsvnyeYGRSAVArhlnrtpmavqalpaashgfsdmeQQQRISRSHMntvlgsdiassplqhQSAAQAVGLQASSALSGayrvssglstnnqISHQQhqalnprmpplmsqstsaaqssspysrtpqqgsvqvgsghpaineSRQHARLMAIAqrplsrpqmtrqpptvpvqvqtpsagprypttsvgvrgsvgdqrenvggsmqsvmidnptdfpleqnwrptgrmrgslsgraYSDALSHmmilptqpvaqparpqlsppphlsvpnqlqallgnsntrfpqlqtnpvtdpgsrvsgtrpershgmh
MGAVQQQLLQQLKASAANSQRVEEAAQRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKAQELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGSGFLGPSINGNLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTetsacvispqhvnFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTNLLQAVGQFNGHYIIIVAVMSTASSLESSKLQDYVQSGITmqdsdsdliegPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVDQAHDRILSSEKEGCEHqesaavansnpviLDLTKNDDEIDAMSTgeiedvkpdlhSQPVSTNLTMPSELISTVQADQNFVTTDDDFWAGILYPDGSASSDARSDGQTVGGVSAPSSTSFMVSPVLTDAISPAFNREVDALGYTHLTTPVMQSLCSAPNNLQIQQTQLMNPSVNYEYGRSAVARHLNRTPMAVQALPAASHGFSDMEQQQRISRSHMNTVLGSDIASSPLQHQSAAQAVGLQASSALSGAYRVSSGLSTNNQISHQQHQALNPRMPPLMSQSTSAAQSSSPYSRTPQQGSVQVGSGHPAINESRQHARLMAIAQRPlsrpqmtrqpptvpvqvqtpsagprypttsvgvrgsvgdqRENVGGSMQSVMIDNPTDFPLEQNWRPTGRMRGSLSGRAYSDALSHMMILPTQPVAQPARPQLSPPPHLSVPNQLQALLGNSNTRFPqlqtnpvtdpgsrvsgtrpershgmh
MGAVqqqllqqlKASAANSQRVEEAAQRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKAQELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGSGFLGPSINGNLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTNLLQAVGQFNGHYIIIVAVMSTASSLESSKLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVDQAHDRILSSEKEGCEHQESAAVANSNPVILDLTKNDDEIDAMSTGEIEDVKPDLHSQPVSTNLTMPSELISTVQADQNFVTTDDDFWAGILYPdgsassdarsdgQTVGGVSAPSSTSFMVSPVLTDAISPAFNREVDALGYTHLTTPVMQSLCSAPNNLQIQQTQLMNPSVNYEYGRSAVARHLNRTPMAVQALPAASHGFSDMEQQQRISRSHMNTVLGSDIASSPLQHQSAAQAVGLQASSALSGAYRVSSGLSTNNQISHQQHQALNPRMPPLMsqstsaaqsssPYSRTPQQGSVQVGSGHPAINESRQHARLMAIAQRPLSrpqmtrqpptvpvqvqtpSAGPRYPTTSVGVRGSVGDQRENVGGSMQSVMIDNPTDFPLEQNWRPTGRMRGSLSGRAYSDALSHMMILPTQPVAQPARPQLSPPPHLSVPNQLQALLGNSNTRFPQLQTNPVTDPGSRVSGTRPERSHGMH
**************************QRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVP****ELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGSGFLGPSINGNLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTNLLQAVGQFNGHYIIIVAVMST*******************************RISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIME**************************************************************************LISTVQADQNFVTTDDDFWAGILYP**************************MVSPVLTDAISPAFNREVDALGYTHLTTPVMQSLCSAPNNLQIQQTQLMNPSVNYEYGRSAVARH******************************************************************************************************************************************************************************************************************************************************************************************************
******************SQRVEEAAQRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKAQELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGS****************TIMTRFYPLLKMGQILA**********FMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRT******GPQLPTNVSPMLKYGTNLLQAVGQFNGHYIIIVAVMSTASS*********************DLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIMEA********************************************DAM****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
************************AAQRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKAQELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGSGFLGPSINGNLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTNLLQAVGQFNGHYIIIVAVMSTASSLESSKLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVDQAHDRILSSE***********VANSNPVILDLTKNDDEIDAMSTGEIEDVKPDLHSQPVSTNLTMPSELISTVQADQNFVTTDDDFWAGILYPDGS******************SSTSFMVSPVLTDAISPAFNREVDALGYTHLTTPVMQSLCSAPNNLQIQQTQLMNPSVNYEYGRSAVARHLNRTPMAVQALPAASH***********SRSHMNTVLGSDIASSP************QASSALSGAYRVSSGLSTNNQISHQQHQALNPRMPP*****************************HPAINESRQHARLMAIAQRPLSRPQMTRQPPTVPVQVQTPSAGPRYPTTSVGVRGSVGDQRENVGGSMQSVMIDNPTDFPLEQNWRPTGRMRGSLSGRAYSDALSHMMILPTQPVAQPARPQLSPPPHLSVPNQLQALLGNSNTRFPQLQTNP********************
*G**QQQLLQQLKASAANSQRVEEAAQRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKAQELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGSGFLGPSINGNLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTNLLQAVGQFNGHYIIIVAVMSTASSLESSKLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIME*******************************NPV*********************************************************FWAGILYPDGSASSDARSDGQTVGGVSAPSSTS*MVS***TDAISPAFNREVDALGYTHLTTPVMQSLCSAPNNLQIQQTQL****************************************************************************************************************************************************************************************************************************Q*W******R*SLSGRAYSDALSHMMILPT*****************SVPNQLQ*LLG*********************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGAVQQQLLQQLKASAANSQRVEEAAQRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKAQELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGSGFLGPSINGNLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEEKIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTNLLQAVGQFNGHYIIIVAVMSTASSLESSKLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVDQAHDRILSSEKEGCEHQESAAVANSNPVILDLTKNDDEIDAMSTGEIEDVKPDLHSQPVSTNLTMPSELISTVQADQNFVTTDDDFWAGILYPDGSASSDARSDGQTVGGVSAPSSTSFMVSPVLTDAISPAFNREVDALGYTHLTTPVMQSLCSAPNNLQIQQTQLMNPSVNYEYGRSAVARHLNRTPMAVQALPAASHGFSDMEQQQRISRSHMNTVLGSDIASSPLQHQSAAQAVGLQASSALSGAYRVSSGLSTNNQISHQQHQALNPRMPPLMSQSTSAAQSSSPYSRTPQQGSVQVGSGHPAINESRQHARLMAIAQRPLSRPQMTRQPPTVPVQVQTPSAGPRYPTTSVGVRGSVGDQRENVGGSMQSVMIDNPTDFPLEQNWRPTGRMRGSLSGRAYSDALSHMMILPTQPVAQPARPQLSPPPHLSVPNQLQALLGNSNTRFPQLQTNPVTDPGSRVSGTRPERSHGMH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query870 2.2.26 [Sep-21-2011]
Q12216726 E3 SUMO-protein ligase SI yes no 0.319 0.382 0.265 2e-20
O94451727 E3 SUMO-protein ligase pl yes no 0.209 0.250 0.285 6e-20
Q8NF64920 Zinc finger MIZ domain-co yes no 0.114 0.108 0.362 1e-18
Q8CIE2920 Zinc finger MIZ domain-co yes no 0.114 0.108 0.362 2e-18
Q04195904 E3 SUMO-protein ligase SI no no 0.333 0.320 0.267 2e-17
Q9ULJ61067 Zinc finger MIZ domain-co no no 0.139 0.113 0.333 2e-17
Q6P1E11072 Zinc finger MIZ domain-co no no 0.139 0.112 0.333 2e-17
Q9JM05507 E3 SUMO-protein ligase PI no no 0.112 0.193 0.343 6e-15
Q6AZ28572 E3 SUMO-protein ligase PI no no 0.109 0.166 0.322 7e-14
Q8N2W9510 E3 SUMO-protein ligase PI no no 0.112 0.192 0.343 7e-14
>sp|Q12216|SIZ2_YEAST E3 SUMO-protein ligase SIZ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NFI1 PE=1 SV=1 Back     alignment and function desciption
 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 53/331 (16%)

Query: 146 FY-PLLKMGQILASLEVEPGYGAFMIDFHISK---NMIQSTEE-KIRLF----VAQTDKT 196
           FY P++++      L+   G G   + F +SK   ++++S +  K+ LF    +    +T
Sbjct: 158 FYKPIVQIPDANKKLKQSAGRGCTKMKFKVSKSNHDLLKSNKSYKLYLFSGFSIPFIYET 217

Query: 197 ETSACVISPQHVNFILNGKGIERRTN-VFMDPGPQLPTNVSPMLKYGTNLLQAVGQFNGH 255
                +  P     + NG  +E     +    G   P N++P LK  T +       + H
Sbjct: 218 VGHEAIDFPYPCELVFNGTKLEDNVKGLKKQNGTGNPANLTPYLKVPTEM----NHLDLH 273

Query: 256 YI----------IIVAVMS----TASSLESSKL-----QDYVQSGITMQDSDSDLIEGPS 296
           Y+           IV V S        L+  K+       Y++  +  QD D D+I   +
Sbjct: 274 YLNIDKEYSISCFIVEVFSPEALLGKILKRPKIIKQATTAYIKRTLNEQDDD-DIITTST 332

Query: 297 RISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVD 356
            +SL CPIS  R+  P K   C+H QCFD   ++H  S+ P+W+CP C   + +  +++ 
Sbjct: 333 VLSLQCPISCTRMKYPAKTDQCKHIQCFDALWFLHSQSQVPTWQCPICQHPIKFDQLKIS 392

Query: 357 QNMVKVLREVGENVADVIISADGSWKAIMEAD----DNVDQAHDRILSSEKEGCEHQE-- 410
           + +  +++   E+V  V IS DGSWK I  +     D V+Q H   + +E +G   QE  
Sbjct: 393 EFVDNIIQNCNEDVEQVEISVDGSWKPIHNSSAVITDTVNQNHS--VKNENQGTVKQEQD 450

Query: 411 --SAAVANSN---------PVILDLTKNDDE 430
             S    ++N         P I+ L  +DDE
Sbjct: 451 YDSRNAFDTNLRNGSNHNEPEIISLDSSDDE 481
May act as an E3 ligase mediating SUMO/Smt3 attachment to septins. May be involved in chromosome maintenance.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|O94451|PLI1_SCHPO E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3 Back     alignment and function description
>sp|Q8NF64|ZMIZ2_HUMAN Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens GN=ZMIZ2 PE=1 SV=2 Back     alignment and function description
>sp|Q8CIE2|ZMIZ2_MOUSE Zinc finger MIZ domain-containing protein 2 OS=Mus musculus GN=Zmiz2 PE=2 SV=2 Back     alignment and function description
>sp|Q04195|SIZ1_YEAST E3 SUMO-protein ligase SIZ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIZ1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ULJ6|ZMIZ1_HUMAN Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens GN=ZMIZ1 PE=1 SV=3 Back     alignment and function description
>sp|Q6P1E1|ZMIZ1_MOUSE Zinc finger MIZ domain-containing protein 1 OS=Mus musculus GN=Zmiz1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JM05|PIAS4_MOUSE E3 SUMO-protein ligase PIAS4 OS=Mus musculus GN=Pias4 PE=1 SV=2 Back     alignment and function description
>sp|Q6AZ28|PIAS2_RAT E3 SUMO-protein ligase PIAS2 OS=Rattus norvegicus GN=Pias2 PE=1 SV=1 Back     alignment and function description
>sp|Q8N2W9|PIAS4_HUMAN E3 SUMO-protein ligase PIAS4 OS=Homo sapiens GN=PIAS4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query870
359474301920 PREDICTED: uncharacterized protein LOC10 0.970 0.917 0.499 0.0
147845493901 hypothetical protein VITISV_040324 [Viti 0.925 0.893 0.455 0.0
255537601853 sumo ligase, putative [Ricinus communis] 0.836 0.853 0.492 0.0
449501857859 PREDICTED: uncharacterized protein LOC10 0.897 0.909 0.445 0.0
449452442859 PREDICTED: uncharacterized protein LOC10 0.897 0.909 0.443 0.0
356495697914 PREDICTED: uncharacterized protein LOC10 0.867 0.826 0.437 1e-174
356540426876 PREDICTED: uncharacterized protein LOC10 0.873 0.867 0.440 1e-173
359489813881 PREDICTED: uncharacterized protein LOC10 0.889 0.878 0.441 1e-171
2104683828 transcription factor [Vicia faba var. mi 0.875 0.920 0.435 1e-166
297742248646 unnamed protein product [Vitis vinifera] 0.534 0.719 0.572 1e-164
>gi|359474301|ref|XP_002272827.2| PREDICTED: uncharacterized protein LOC100243215 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/907 (49%), Positives = 582/907 (64%), Gaps = 63/907 (6%)

Query: 14  ASAANSQRVEEAAQRLAAYV-----LLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKA 68
           AS ANS R+    +RLA +V     +L   ++  EF +LCL L+RGIDY++AN EVP + 
Sbjct: 27  ASLANSFRLNAVLERLAMHVRSGHRILDGQRSTEEFHNLCLSLARGIDYSLANGEVPARV 86

Query: 69  QELPSLLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEIGSGFLG 128
           Q+LP LLKQICQR+ND  L   IMVLM SVK+AC++ WF+ ++ +EL+ L +EIGS F  
Sbjct: 87  QDLPLLLKQICQRRNDLFLLGGIMVLMVSVKNACKVGWFTEKDTEELLTLVNEIGSNFCN 146

Query: 129 PSING----NLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEE 184
              N     +   T+S IMTRFYP ++MGQILAS EV+PGYG F++DFHISK+   S++E
Sbjct: 147 LGDNNTEPISFHPTISKIMTRFYPRMEMGQILASREVKPGYGTFLVDFHISKSTKFSSQE 206

Query: 185 KIRLFVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTN 244
           KIRLFVAQTD  ETS+C+I+P  VNF+LNGKG+ERRTNVFMD GPQ+PTNV+PMLKYGTN
Sbjct: 207 KIRLFVAQTDNIETSSCIITPPQVNFLLNGKGVERRTNVFMDSGPQIPTNVTPMLKYGTN 266

Query: 245 LLQAVGQFNGHYIIIVAVMSTASSLESSKLQDYVQSGITMQDSDSDLIEGPSRISLNCPI 304
           LLQAVGQFNGHYI+ +A M+  SS ++  LQDYVQ  ++M  SD++++EGPSRISLNCPI
Sbjct: 267 LLQAVGQFNGHYILAIAFMAVISSPDNPVLQDYVQPAVSMLHSDNEIVEGPSRISLNCPI 326

Query: 305 SYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLR 364
           S  RI  PVKGHSC+H QCFDF N+V INSRRPSWRCPHCNQ+VCYTDIR+DQNM  VL+
Sbjct: 327 SRTRIKVPVKGHSCKHLQCFDFGNFVEINSRRPSWRCPHCNQYVCYTDIRIDQNM--VLK 384

Query: 365 EVGENVADVIISADGSWKAIMEADDNVDQAHDRILSSEKEGCEHQESAAVANSNPVILDL 424
           EVGENVADVIISADGSWKAI+E++D+VDQ     L+S+++G + Q S + +N++P + DL
Sbjct: 385 EVGENVADVIISADGSWKAILESNDHVDQPRVGTLNSQQKGPDLQGSTSFSNASPNVWDL 444

Query: 425 TKNDDEIDAMSTGEIEDVKP---DLHSQPVSTNLTMPSELISTVQADQNFVT-TDDDFWA 480
           T+ DDE++A    EIED KP   ++    ++T  TM  EL +  + +QN V+   D F +
Sbjct: 445 TEGDDEMNAFDACEIEDRKPFQSNIQGHSITTKQTMAPELNNATEVNQNAVSRVQDGFCS 504

Query: 481 GILYPD-GSASSDARSDGQTVGGVSAPSSTSFMVSPVLTDAISPAFNREV-DALGYTHLT 538
           GIL    GS++  ARSD Q +GG S PS  +F++ PVLTDAISPA NR   D  G THLT
Sbjct: 505 GILLSTYGSSTHSARSDAQFIGGTSQPSPANFLLPPVLTDAISPALNRGTEDIRGNTHLT 564

Query: 539 TPVMQSLCSAPNNLQIQQTQLMNPSVNYEYGR-SAVARHLNRTPMAVQALPAASHGF--- 594
           T  +      P++LQ+QQ Q  +  V+ EYGR   + RH+ RTP+AVQALPA +      
Sbjct: 565 TSTLHDQLPIPDSLQLQQAQFGHSIVSNEYGRFPTIPRHITRTPIAVQALPAQTQTSGPH 624

Query: 595 -------------------SDMEQQQRISRSHMNTVLGSDIASSPLQHQSAAQAVGLQAS 635
                              SDME+ Q+ SRS  N V  SDI++S LQH S +Q    Q +
Sbjct: 625 HRSRTTLISMVPNGPNTVGSDMERPQQFSRSIFNPVQISDISASALQHHSMSQNWNQQVA 684

Query: 636 SALS-------GAYRVSSGLSTNNQISHQQHQALNPRMPPLMSQSTSAAQSSSPYSRTP- 687
              +       GAYR SSGL T      +       + P   + S     S+  +SR+  
Sbjct: 685 GHPTTSQRPGPGAYRTSSGLPT------EPQTLQQQQSPQARTHSNLLRSSAHHHSRSQV 738

Query: 688 QQGSVQVGSGHPAINESRQHARLMAIAQRPLSRPQMTRQPPTVPVQVQTPSAGPRYPTTS 747
           QQG  Q  + H       Q+A+ M  AQR     QMTR P  +PVQ QT   G  +P  +
Sbjct: 739 QQGGAQGRATHAVGTGISQNAQPMVAAQRAA---QMTRMP--LPVQNQTSRTGSAFPVNA 793

Query: 748 VGVRGSVGDQRENVGGSMQSV-MIDNPTDFPLEQNWRPTGRMRGSLSGRAYSDALSHMMI 806
            G R + G+QR N+ G +Q+V   ++  D   EQNWRPTG MRGSL GRAY+ AL+ ++I
Sbjct: 794 NGGRSTAGEQRGNIEGMVQAVSRPESLVDLASEQNWRPTGLMRGSLVGRAYNSALNQLVI 853

Query: 807 LPTQPVAQPARPQLSPPPHLSVPNQLQALLGNSNTRF-PQLQTNPVTDPGSRV--SGTRP 863
            PTQP      P     P    P  LQALL N  T   PQ    P+T P S    SG  P
Sbjct: 854 QPTQPTQSTRPPTPITSPPPGFPPHLQALLTNIRTPLVPQAPNYPMTQPASTTGGSGILP 913

Query: 864 ERSHGMH 870
           ERS G+H
Sbjct: 914 ERSLGLH 920

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147845493|emb|CAN82727.1| hypothetical protein VITISV_040324 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255537601|ref|XP_002509867.1| sumo ligase, putative [Ricinus communis] gi|223549766|gb|EEF51254.1| sumo ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449501857|ref|XP_004161477.1| PREDICTED: uncharacterized protein LOC101224471 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452442|ref|XP_004143968.1| PREDICTED: uncharacterized protein LOC101213115 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495697|ref|XP_003516710.1| PREDICTED: uncharacterized protein LOC100780539 [Glycine max] Back     alignment and taxonomy information
>gi|356540426|ref|XP_003538690.1| PREDICTED: uncharacterized protein LOC100784204 [Glycine max] Back     alignment and taxonomy information
>gi|359489813|ref|XP_002275586.2| PREDICTED: uncharacterized protein LOC100256919 [Vitis vinifera] Back     alignment and taxonomy information
>gi|2104683|emb|CAA66482.1| transcription factor [Vicia faba var. minor] Back     alignment and taxonomy information
>gi|297742248|emb|CBI34397.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query870
TAIR|locus:2160417760 AT5G41580 [Arabidopsis thalian 0.497 0.569 0.511 2.1e-124
POMBASE|SPAC1687.05727 pli1 "SUMO E3 ligase Pli1" [Sc 0.263 0.314 0.252 2e-17
SGD|S000002817904 SIZ1 "SUMO/Smt3 ligase that pr 0.232 0.223 0.297 2.4e-17
SGD|S000005682726 NFI1 "SUMO E3 ligase, catalyze 0.282 0.338 0.277 2.7e-16
RGD|1309256412 Zmiz2 "zinc finger, MIZ-type c 0.114 0.242 0.362 4e-16
RGD|1308737228 Pias4 "protein inhibitor of ac 0.112 0.429 0.343 1.1e-15
MGI|MGI:106374920 Zmiz2 "zinc finger, MIZ-type c 0.114 0.108 0.362 5e-15
UNIPROTKB|I3LA30922 LOC100739821 "Uncharacterized 0.114 0.108 0.372 5.1e-15
UNIPROTKB|F1MCH7922 ZMIZ2 "Uncharacterized protein 0.114 0.108 0.362 8.3e-15
UNIPROTKB|G3N1J5926 ZMIZ2 "Uncharacterized protein 0.114 0.107 0.362 8.4e-15
TAIR|locus:2160417 AT5G41580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1143 (407.4 bits), Expect = 2.1e-124, Sum P(2) = 2.1e-124
 Identities = 229/448 (51%), Positives = 293/448 (65%)

Query:    14 ASAANSQRVEEAAQRLAAYVLLPDHQNVREFFSLCLFLSRGIDYAVANNEVPPKAQELPS 73
             AS  NS R+    QRL  ++      + +EF   C+  ++GID+A+ANN++P K +E P 
Sbjct:    21 ASLVNSFRLASVTQRLRYHIQDGAKVDPKEFQICCISFAKGIDFAIANNDIPKKVEEFPW 80

Query:    74 LLKQICQRKNDPVLQAAIMVLMFSVKSACRIEWFSVEEAQELIALADEI-----GSGFLG 128
             LLKQ+C+   D   + A+MVLM SVK AC + WFS  E+QELIALADEI      SG   
Sbjct:    81 LLKQLCRHGTDVYTKTALMVLMISVKHACHLGWFSDSESQELIALADEIRTCFGSSGSTS 140

Query:   129 PSINGNLVSTVSTIMTRFYPLLKMGQILASLEVEPGYGAFMIDFHISKNMIQSTEEKIRL 188
             P I     ST S IM RFYP +K+G +L S EV+ GY     DF+ISKNM  S +EKIRL
Sbjct:   141 PGIKSP-GSTFSQIMERFYPFVKLGHVLVSFEVKAGYTMLAHDFYISKNMPHSLQEKIRL 199

Query:   189 FVAQTDKTETSACVISPQHVNFILNGKGIERRTNVFMDPGPQLPTNVSPMLKYGTNLLQA 248
             FVAQTD  +TSAC+ +P  V+F+LNGKG+E+R N+ MD GPQLPTNV+  LKYGTNLLQ 
Sbjct:   200 FVAQTDNIDTSACISNPPEVSFLLNGKGVEKRVNIAMDTGPQLPTNVTAQLKYGTNLLQV 259

Query:   249 VGQFNGHYIIIVAVMSTASSLESSKLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKR 308
             +G F G+YIII+A        E   L+DY+QSG+     DSD+IEGPSR+SL+CPIS KR
Sbjct:   260 MGNFKGNYIIIIAFTGLVVPPEKPVLKDYLQSGVIEASPDSDIIEGPSRVSLSCPISRKR 319

Query:   309 INTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGE 368
             I  PVKG  C+H QCFDFSNYVHIN R P+WRCPHCNQ VCY DIR+DQNM K+L++V  
Sbjct:   320 IKLPVKGQLCKHLQCFDFSNYVHINMRNPTWRCPHCNQPVCYPDIRLDQNMAKILKDVEH 379

Query:   369 NVADVIISADGSWKAIMEADDNVDQAHDRILSSEKEGCEHQESAAVANSNPVILDLTKND 428
             N ADVII A G+WK      +  +   + I   E       +  ++ NS PV+ DLT +D
Sbjct:   380 NAADVIIDAGGTWKVTKNTGETPEPVREIIHDLE-------DPMSLLNSGPVVFDLTGDD 432

Query:   429 D-EIDAMSTGEIEDVKPDLH-SQPVSTN 454
             D E++     ++ED KP +  +Q  S N
Sbjct:   433 DAELEVFGDNKVEDRKPCMSDAQGQSNN 460
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
POMBASE|SPAC1687.05 pli1 "SUMO E3 ligase Pli1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000002817 SIZ1 "SUMO/Smt3 ligase that promotes the attachment of sumo" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
SGD|S000005682 NFI1 "SUMO E3 ligase, catalyzes the covalent attachment of SUMO (Smt3p) to" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
RGD|1309256 Zmiz2 "zinc finger, MIZ-type containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1308737 Pias4 "protein inhibitor of activated STAT, 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:106374 Zmiz2 "zinc finger, MIZ-type containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LA30 LOC100739821 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MCH7 ZMIZ2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3N1J5 ZMIZ2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00031055
hypothetical protein (822 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query870
pfam0289150 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger 1e-23
pfam1178957 pfam11789, zf-Nse, Zinc-finger of the MIZ type in 2e-04
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 0.003
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 0.004
>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger Back     alignment and domain information 
 Score = 93.9 bits (234), Expect = 1e-23
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 298 ISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQ 346
           +SL CPISY RI+ PV+G  C+H QCFD  +++  N R P+W CP C++
Sbjct: 1   VSLKCPISYLRISIPVRGRFCKHIQCFDLLSFLESNERTPTWNCPVCDK 49

This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation. Length = 50
>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 870
KOG2169636 consensus Zn-finger transcription factor [Transcri 100.0
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 99.8
PF14324144 PINIT: PINIT domain; PDB: 3I2D_A. 99.47
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.52
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.3
KOG2979262 consensus Protein involved in DNA repair [General 96.99
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.51
COG5627275 MMS21 DNA repair protein MMS21 [DNA replication, r 95.26
COG5222427 Uncharacterized conserved protein, contains RING Z 93.04
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 92.64
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 87.46
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 85.99
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 82.36
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 81.44
>KOG2169 consensus Zn-finger transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-33  Score=324.25  Aligned_cols=188  Identities=28%  Similarity=0.554  Sum_probs=157.3

Q ss_pred             eeeCCCcEEEEEcCceecccc--------ccCCCCCCCCcccccc--cccccc-cEEEE--EeeeCceEEEEEEEEEeec
Q 002886          201 CVISPQHVNFILNGKGIERRT--------NVFMDPGPQLPTNVSP--MLKYGT-NLLQA--VGQFNGHYIIIVAVMSTAS  267 (870)
Q Consensus       201 ci~wP~~I~IkVNGk~Ie~rr--------nvk~kpG~d~PIDIT~--~LK~G~-N~IqI--v~~fn~~YiiaV~lV~v~s  267 (870)
                      ...||..+.++||++.++..+        +++ .+++.+|.|||.  +++.-. |.+.+  ..++++.|.+.+++++...
T Consensus       183 e~~~p~~~~~~vn~~~~~l~~~~~~~n~~~~~-~~~~~~P~n~t~~~~~~~~~~~~~~~~~~~~~~~~ysl~~~~v~~~t  261 (636)
T KOG2169|consen  183 EDHFPPNVQVKVNNSPCQLPFGYMPNNKHGLE-PKRPSRPGNITSLSRLSVTTPNQITVLWTAQGGKSYSLSVYFVEGLT  261 (636)
T ss_pred             ccccCceeEEEecCCcceeeccccCCCCcccc-cCCCCCCCcCcccccccccccccceEEEEeccCcccceEEEEecccC
Confidence            346999999999988766441        122 368999999999  554433 45443  4478889999999987654


Q ss_pred             ccc-----------hh--hH-HHhhhcccCCCCCCCCeeeccceecccCCCcccccccCCCCCCcCcccccchHHHHHHH
Q 002886          268 SLE-----------SS--KL-QDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHIN  333 (870)
Q Consensus       268 ~~e-----------~~--~L-qd~Iq~~lss~D~DDDIv~~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n  333 (870)
                      ...           ..  .. .++|++++ ..++|.||+++.++|||+|||+++||++|+|+..|+|+||||+.+||++|
T Consensus       262 ~~~llq~~~~~~~~~~~~~~s~~~~~~~l-~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n  340 (636)
T KOG2169|consen  262 SKDLLQRLKQNGKINRNLSQSDALIKKKL-TAGPDSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMN  340 (636)
T ss_pred             HHHHHHHHhccCCccCchhHhHHHhhccc-ccCCcccceeccceeEecCCcccceeecCCcccccccceecchhhhHHhc
Confidence            221           11  11 34566666 77888899999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccCCCCccCcCCeeecHHHHHHHHHhCCCccEEEEccCCceEeeccCCcc
Q 002886          334 SRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDN  390 (870)
Q Consensus       334 ~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~~enveeV~V~~DGsW~pv~E~ddd  390 (870)
                      +++|+|+||+|++.+.|++|+||+||.+||..+..++++|++..||+|+++.+++++
T Consensus       341 ~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~~~~ev~~~~dGsw~pi~~~~~~  397 (636)
T KOG2169|consen  341 EQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQANVEEVEVSEDGSWKPIPEEAEA  397 (636)
T ss_pred             cCCCeeeCccCCccccccchhhhHHHHHHHhhccCCCcceEecCCCceecCcccccc
Confidence            999999999999999999999999999999999999999999999999999998863

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query870
3i2d_A371 Crystal Structure Of S. Cerevisiae Sumo E3 Ligase S 1e-16
4fo9_A360 Crystal Structure Of The E3 Sumo Ligase Pias2 Lengt 1e-14
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1 Length = 371 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 120/275 (43%), Gaps = 28/275 (10%)
Query: 139 VSTIMTRFYPLLKMGQILASL----EVEPGYGAFMIDFHISK---NMIQSTEEKIRLFVA 191
           V TI  +  P  K+ +++  L    EV  G G     F +SK   N++ +   K RL++ 
Sbjct: 63  VPTIHFKESPFYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLF 122
Query: 192 QTDKTETSACVISPQHVNFI--LNGKGIERRTNV--FM-DPGPQLPTNVSPMLKYGT--- 243
                   +    P    F   L    ++ + N+  F   PG   P +++P LK  T   
Sbjct: 123 SGMINPLGSRGNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPADLTPHLKPYTQQN 182
Query: 244 --NLLQAVGQFNGHYIIIVAVMSTASSLESSKLQD----------YVQSGITMQDSDSDL 291
              L+ A           +  M T   L    LQ           Y++  +  +D +  L
Sbjct: 183 NVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHPKIIKQATLLYLKKTLR-EDEEMGL 241
Query: 292 IEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYT 351
               + +SL CPISY R+  P K  +C+H QCFD   ++H   + P+W+CP C   +   
Sbjct: 242 TTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301
Query: 352 DIRVDQNMVKVLREVGENVADVIISADGSWKAIME 386
           ++ + + +  +L+   +NV  V +++DG W AI+E
Sbjct: 302 NLAISEFVDDILQNCQKNVEQVELTSDGKWTAILE 336
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2 Length = 360 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query870
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 2e-45
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 8e-39
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 8e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 8e-06
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371 Back     alignment and structure
 Score =  166 bits (421), Expect = 2e-45
 Identities = 66/297 (22%), Positives = 127/297 (42%), Gaps = 23/297 (7%)

Query: 146 FYPLLKM-GQILASLEVEPGYGAFMIDFHISKNMIQ-----STEEKIRLFVAQTDKTETS 199
           FY + ++  +++ ++EV  G G     F +SK         +++ ++ LF    +   + 
Sbjct: 73  FYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSR 132

Query: 200 --ACVISPQHVNFILNGKGIE-RRTNVFMDPGPQLPTNVSPMLK--YGTNLLQAVGQFNG 254
               +  P       N   I+         PG   P +++P LK     N ++ +  F  
Sbjct: 133 GNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPADLTPHLKPYTQQNNVELIYAFTT 192

Query: 255 HYIIIVAVMSTASSLESSKLQDYVQSGITMQ------------DSDSDLIEGPSRISLNC 302
               +   +    + E    +      I  Q            D +  L    + +SL C
Sbjct: 193 KEYKLFGYIVEMITPEQLLEKVLQHPKIIKQATLLYLKKTLREDEEMGLTTTSTIMSLQC 252

Query: 303 PISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKV 362
           PISY R+  P K  +C+H QCFD   ++H   + P+W+CP C   +   ++ + + +  +
Sbjct: 253 PISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDI 312

Query: 363 LREVGENVADVIISADGSWKAIMEADDNVDQAHDRILSSEKEGCEHQESAAVANSNP 419
           L+   +NV  V +++DG W AI+E DD+ D   +    S ++G   + +AA+ + + 
Sbjct: 313 LQNCQKNVEQVELTSDGKWTAILEDDDDSDSDSNDGSRSPEKGTLGEGAAALEHHHH 369
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Length = 360 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query870
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 100.0
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 100.0
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.88
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 97.41
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 97.22
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 97.21
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 97.03
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 96.58
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 96.4
2f42_A179 STIP1 homology and U-box containing protein 1; cha 96.39
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 96.26
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 96.1
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 94.96
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 94.87
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 94.73
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 94.37
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 94.27
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 94.06
1z6u_A150 NP95-like ring finger protein isoform B; structura 93.79
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 93.6
2ecw_A85 Tripartite motif-containing protein 30; metal bind 93.53
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 93.35
2ysl_A73 Tripartite motif-containing protein 31; ring-type 93.03
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 92.91
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 91.93
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 91.87
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 90.44
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 90.18
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 90.16
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 90.09
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 90.06
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 89.85
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 88.98
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 87.09
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 82.85
2ect_A78 Ring finger protein 126; metal binding protein, st 81.99
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 80.06
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=6.7e-52  Score=447.90  Aligned_cols=258  Identities=24%  Similarity=0.475  Sum_probs=210.4

Q ss_pred             ccceeecccccccchhceeec-ceeecCCCceeeEEEEeeccc---cc--CCCceEEEEEEecCCCCC--cceeeCCCcE
Q 002886          137 STVSTIMTRFYPLLKMGQILA-SLEVEPGYGAFMIDFHISKNM---IQ--STEEKIRLFVAQTDKTET--SACVISPQHV  208 (870)
Q Consensus       137 ~~vs~imsrFYP~~kl~~Il~-slEv~pG~g~~~idF~IsKs~---~~--~sq~kLrLfc~q~d~~~~--s~ci~wP~~I  208 (870)
                      ..+.+..+|||.++++..-+. ......||+.+.++|.|++++   +.  ..+++|+|||+..+..+.  ..++.||..+
T Consensus        64 ~~l~Fk~SPFY~i~~~i~~~~~~~~~~~~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~~  143 (371)
T 3i2d_A           64 PTIHFKESPFYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFPN  143 (371)
T ss_dssp             CCCCBCCBTTEEEEEEEEEEEEEECCEEEEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSSE
T ss_pred             CceeecCCCCceeeeecCCccccccccCCCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCce
Confidence            467788899999999877664 455568999999999999875   22  467899999998877653  3578999999


Q ss_pred             EEEEcCceecc-ccccCCCCCCCCccccccccccc--ccEEEEEeee-CceEEEEEEEEEeecccch-------h-----
Q 002886          209 NFILNGKGIER-RTNVFMDPGPQLPTNVSPMLKYG--TNLLQAVGQF-NGHYIIIVAVMSTASSLES-------S-----  272 (870)
Q Consensus       209 ~IkVNGk~Ie~-rrnvk~kpG~d~PIDIT~~LK~G--~N~IqIv~~f-n~~YiiaV~lV~v~s~~e~-------~-----  272 (870)
                      +|+|||+.|+. .+++++|+|+++|+|||++|+.+  .|.|++.+.+ .+.|+++|++|+..+..+.       +     
T Consensus       144 eI~VNg~~vk~n~rGlKnk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~~i~~e  223 (371)
T 3i2d_A          144 ELRCNNVQIKDNIRGFKSKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHPKIIKQ  223 (371)
T ss_dssp             EEEETTEECCSCCSSCTTSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSCCBCHH
T ss_pred             EEEECCEEeccccccCCCCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcCCCCHH
Confidence            99999999986 46788899999999999999986  7999998755 4679999999987653221       1     


Q ss_pred             hHHHhhhcccCCCCCCCCeeeccceecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCC
Q 002886          273 KLQDYVQSGITMQDSDSDLIEGPSRISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTD  352 (870)
Q Consensus       273 ~Lqd~Iq~~lss~D~DDDIv~~s~~VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~d  352 (870)
                      ...++|++.+ ..|+||||++++..|||+||||++||++||||..|+|+|||||++||+++.++++|+||||++.+++++
T Consensus       224 ~tl~~Ik~~l-s~d~DdDIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d  302 (371)
T 3i2d_A          224 ATLLYLKKTL-REDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN  302 (371)
T ss_dssp             HHHHHHHHHH-HSCC------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred             HHHHHHHHHh-ccCCCCceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence            1135667666 568889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecHHHHHHHHHhCCCccEEEEccCCceEeeccCCccccccc
Q 002886          353 IRVDQNMVKVLREVGENVADVIISADGSWKAIMEADDNVDQAH  395 (870)
Q Consensus       353 L~ID~y~~eILk~~~enveeV~V~~DGsW~pv~E~ddd~d~~~  395 (870)
                      |+||+||++||+++++++++|+|++||+|+++.|++||+|++.
T Consensus       303 L~ID~~~~~IL~~~~~dve~V~v~~DGsW~p~~e~~~d~~~d~  345 (371)
T 3i2d_A          303 LAISEFVDDILQNCQKNVEQVELTSDGKWTAILEDDDDSDSDS  345 (371)
T ss_dssp             EEEBHHHHHHHTTSCTTCCEEEEETTSCEEECC----------
T ss_pred             eeEcHHHHHHHHhccCCccEEEECCCCCEEeccCCcCCCcccc
Confidence            9999999999999999999999999999999999887766553
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 870
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 1e-06
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 300 LNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVD--- 356
           L CPI  + I  PV    C H  C        +N ++   +CP C   +    ++     
Sbjct: 22  LECPICLELIKEPVS-TKCDHIFCKFCMLK-LLNQKKGPSQCPLCKNDITKRSLQESTRF 79

Query: 357 QNMVKVLREV 366
             +V+ L ++
Sbjct: 80  SQLVEELLKI 89

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query870
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 97.36
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.14
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 96.91
d2c2la280 STIP1 homology and U box-containing protein 1, STU 96.84
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 96.28
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 96.21
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 91.3
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 90.02
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 88.66
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 86.6
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 86.06
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 83.88
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0001  Score=64.44  Aligned_cols=65  Identities=17%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             ecccCCCcccccccCCCCCCcCcccccchHHHHHHHcCCCcccccCCCCccCcCCeeecHHHHHHHHHh
Q 002886          298 ISLNCPISYKRINTPVKGHSCRHHQCFDFSNYVHINSRRPSWRCPHCNQHVCYTDIRVDQNMVKVLREV  366 (870)
Q Consensus       298 VSL~CPIS~~RIkiPvRG~~CkHLQCFDL~sFL~~n~qkptW~CPIC~k~~~~~dL~ID~y~~eILk~~  366 (870)
                      =.|.|||++..|+-||....|.|  .||.......-.+..  .||+|++++..++|+.+.-+.+.+++.
T Consensus        21 ~~f~CPI~~~lm~dPV~~~~~~~--ty~r~~I~~~l~~~~--~~P~~~~~l~~~~L~pN~~Lr~~I~~~   85 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPVVLPSSRV--TVDRSTIARHLLSDQ--TDPFNRSPLTMDQIRPNTELKEKIQRW   85 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCC--EEEHHHHHHHTTTSC--BCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred             HHhCCcCchhHHHHHHhcccccc--hhhHHHHHHHHHhcC--CcccccccccchhhcchHHHHHHHHHH
Confidence            36999999999999999998888  688887777654433  699999999999999999998877653
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure