Citrus Sinensis ID: 002901

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------87
MELKQDQDWQECDQEQEEGSQSSNETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNVKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKKKLAREAFRRKGKDQREVSTDDLRILMSL
ccccccccccccccHHccccccccccEEEEEEEEEEEEEEEEccccccccEEEEEEccccccccccEEEEcccccEEEEEcHHHHHHHHHHHHcccEEEEEEECccccccccccccEEEEEEccHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHccccEEEEcHHHHHHccccccccccccEEEEEEEccccccccccHHHHHHHHHHccccCEEECcccccccHHHHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccEEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcc
************************ETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQLI****************************E*F**V*******************IKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNE******SA*******************************NVKG***********FMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDV******NTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVRNSIEERILELQDRKK*********************LRILMSL
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MELKQDQDWQECDQEQEEGSQSSNETYMLGFVIANIVGLQYYSGTISGREMVGLVREPLNPYDSNAVKVLNTRTDQVGHIERSVAAVLAPLIDSGMILVEGIVPNTRSKGNRFKIPCQVHIFTRLEMFSIVKDVILEGGLQLISGNDVSFGLSEAMVVKERKGERGVKSVDEIFKLVDKNVKKKAKMEAMEPPKEVIKSELFVHQKEGLGWLVRRENSEELPPFWEEKGGGFVNVLTNYHTDKRPEPLRGGIFADDMGLGKTLTLLSLIALDKCAGVAPGLTGTNSLDLNEVEDEEMSASSSKKRKRGKMSNKGSARGKKHKTVNTKMDDNVKGKSVGMLNKSSSFMGKKITLIVCPPSVFSTWITQLEEHTVPGMLKTYMYYGDRTQDVEELKMYDLVLTTYSTLAIEESWLESPVKKIEWWRVILDEAHVIKNANAQQSRTVTNLNAKRRWVVTGTPIQNGSFDLFSLMAFLQFEPFSVKSYWQSLIQRPLAQGNRKGLSRLQVLMSTISLRRTKDKGLIGLQPKTIEKYYVELSLEERKLYDELEGKAKGVVQDYINAGSLMRNYSTVLSILLRLRQICTNLALCPSDVRSIIPSNTIEDVSNNPDLLKKLVEVLQDGEDFDCPICISPPSDIIITCCAHIFCRSCILKTLQHTKPCCPLCRHPLLQSDLFSSPPESSDMDIAGKTLKNFTSSKVSALLTLLLQLRDKKPTTKSVVFSQFRKMLILLEEPLQAAGFKLLRLDGSMNAKKRAQVIEEFGNPGPGGPTVLLASLKASGAGVNLTAASRVFLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIVxxxxxxxxxxxxxxxxxxxxxAFRRKGKDQREVSTDDLRILMSL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for transcriptional activation or repression of specific target promoters.probableQ9FF61
Helicase-like transcription factor Has both helicasee and E3 ubiquitin ligase activities. Possesses intrinsic ATP-dependent nucleosome-remodeling activity; This activity may be required for transcriptional activation or repression of specific target promoters (By similarity). These may include the SERPINE1 and HIV-1 promoters and the SV40 enhancer, to which this protein can bind directly. Plays a role in error-free postreplication repair (PRR) of damaged DNA and maintains genomic stability through acting as a ubiquitin ligase for 'Lys-63'-linked polyubiquitination of chromatin-bound PCNA.probableQ14527
Helicase-like transcription factor Has both helicasee and E3 ubiquitin ligase activities. Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for transcriptional activation or repression of specific target promoters (By similarity). These may include the SERPINE1, to which this protein can bind directly. Plays a role in error-free postreplication repair (PRR) of damaged DNA and maintains genomic stability through acting as a ubiquitin ligase for 'Lys-63'-linked polyubiquitination of chromatin-bound PCNA.probableQ6PCN7

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1Z63, chain A
Confidence level:very confident
Coverage over the Query: 194-218,248-276,348-592,690-869
View the alignment between query and template
View the model in PyMOL
Template: 1Z3I, chain X
Confidence level:very confident
Coverage over the Query: 194-219,244-277,308,345-594,620-632,661,677-869
View the alignment between query and template
View the model in PyMOL
Template: 3MWY, chain W
Confidence level:very confident
Coverage over the Query: 192-217,247-276,347-553,569-612,690-845,856-868
View the alignment between query and template
View the model in PyMOL
Template: 2L1I, chain A
Confidence level:very confident
Coverage over the Query: 25-142
View the alignment between query and template
View the model in PyMOL
Template: 1WP9, chain A
Confidence level:very confident
Coverage over the Query: 199-214,249-276,348-489,521-586,605-657,686-838
View the alignment between query and template
View the model in PyMOL
Template: 4AP4, chain A
Confidence level:confident
Coverage over the Query: 621-675
View the alignment between query and template
View the model in PyMOL