Citrus Sinensis ID: 002957

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860---

MAATIAKRQGLGRYSDDKMRRIRGTSDISWQRRGVSKVLDRENMKDIAQEKEKERHVLQASSGAKKPRMNQDFGFSDSTRIPKKPRSALNRKVSYENGDEDEVLDKRTSLEVEMSEELDYDAEEIALIRIRERRRSRRLEPDGAMIKTNPHKGRQKIDSANSSSCSSSSTSSGSSDSVLKSNSNNNGRCTARNVKTSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

ccEEEccccccccccHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEcHHHHHccccccccccccccccccccccccccHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccEEEEcccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEcccccccccccccccEEEEcccccccHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

ccEEEEccccccccccHHHccccccccccEcccccHHHHHHccccccccccccccEEEEEccccccEcccccccccccccccccccccccEEEEcccccccccccccccccccccccccccHHHccHHHHHcccccccccccccEcccccccccccccccccHHHHHHHcccccHHHHHHHccccccccccHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccEEcccccccEEEccccccccccHHHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEcHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHccccEEEEcHHHccccccccHHHHHHHHHHHcccccccccccEEEEEcccccEEEccHHHHHccccccccccccccEEEEcccccccHHHHHHccHHHHHHHHccccccccccccccEEEEEccccccccccccccEEEEEccccccccccccccEEEcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccHHHccccccccHHccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEEcccccHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc

MAATIAKrqglgrysddkmrrirgtsdiswqrrgvskvldreNMKDIAQEKEKERHVLqassgakkprmnqdfgfsdstripkkprsalnrkvsyengdedevldkRTSLEVEMSEELDYDAEEIALIRIRERRrsrrlepdgamiktnphkgrqkidsanssscsssstssgssdsvlksnsnnngrctarnvktskinmtdceKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRvhsskvgvsetlcgndervycnhCATSIidlhrscpkcsyelcLTCCKEICEGRLSGRAEMKFQYVnrgygymqggdplpesclhqtpdvhvepsvmwsaddngtiscpptemggcgdcVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKaasregsddnllycpdstkiqEDEELFRFQKhwikgepvIVRNVLdkvtglswepMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFfkgytqgrtydnfwpemlklkdwppsdkfedlmprhcdefisalpfqeysdpraGILNLAVklpsgvlkpdlgpktyIAYGVAeelgrgdsvtklhCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVqdgmdesieepnsdnnkedtdvseindsellpsgirgefkmsrdemqgtaftcphsegtmvesggALWDIFRRQDVPKLEAYLRKHFKEFrhvycspveqvihpihdqcfyLSSEHKKKLkeefgvepwtfeqklgeavfipagcphqvrnlkscTKVAvdfvspenvDECLRLTKEFRllpknhrarEDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

maatiakrqglgrysddkmrrirgtsdiswqrrgvskvldreNMKDIAqekekerhvlqassgakkprmnqdfgfsdstripkkprsalnrkvsyengdedevldkrtslevemseeldydaeeialirirerrrsrrlepdgamiktnphkgrqkidsanssscsssstssgssdsvlksnsnnngrctarnvktskinmtdCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLIldnkltnlrqnraetgtDMLCKAAsregsddnllyCPDSTKIQEDEELFRFQkhwikgepvivRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKEnlvqdgmdesieepnsdnnkedtdvseindsellpsgIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKefrllpknhraredkLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

MAATIAKRQGLGRYSDDKMRRIRGTSDISWQRRGVSKVLDRENMKDIAQEKEKERHVLQASSGAKKPRMNQDFGFSDSTRIPKKPRSALNRKVSYENGDEDEVLDKRTSLEVEMSEELDYDaeeialirirerrrsrrlePDGAMIKTNPHKGRQKIDsanssscsssstssgssdsvlksnsnnnGRCTARNVKTSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIlthteevllteeQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYlssehkkklkeeFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

****************************************************************************************************************************IALIR********************************************************************KINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQ*********L***********NLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLL*****************************************************************************C****GTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIF*

********************************************************************************************************************************************************GRQKIDSANSSSCSSSSTSSGSSDSVLKSNSNNNGRCTARN*************VEHLRYLMVSLLPFIRQICEEQTQEIEFEA*********VGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKE***************YVNRGYGYM************************WSADDNGTISCPPTEMGGCGDCVL****I********************DNKL***********************SDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHR************************************************************************GGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

**********LGRYSDDKMRRIRGTSDISWQRRGVSKVLDRENMKDIAQEKEKERHVLQASSGAKKPRMNQDFGFSDSTRIPKKPRSALNRKVSYENGDEDEVLDKRTSLEVEMSEELDYDAEEIALIRIRERRRSRRLEPDGAMIKTN*********************************SNNNGRCTARNVKTSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENV*********EVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMD*****************SEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

*********GLGRYSDDK*RRIRGTSDISWQRR*V*KVL*************KERHVLQASSGAKK**MN*DFGFSDSTRIPKK****************************************I*****************GA**K****KGRQKIDSANSSSCSSSSTSSGSSDSVLKSNSNNNGRCTARNVKTSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNR***************************VMWS*DDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNR****TDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLK******************************************************************SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		863	2.2.26 [Sep-21-2011]
Q5ZIX8		1325	Lysine-specific demethyla	yes	no	0.425	0.276	0.338	7e-55
Q9Y4C1		1321	Lysine-specific demethyla	yes	no	0.429	0.280	0.334	2e-53
Q63679		1214	Lysine-specific demethyla	yes	no	0.429	0.305	0.334	1e-52
Q6IRB8		1331	Lysine-specific demethyla	N/A	no	0.400	0.259	0.337	1e-50
Q5HZN1		1334	Lysine-specific demethyla	N/A	no	0.400	0.259	0.337	4e-50
Q6PCM1		1323	Lysine-specific demethyla	yes	no	0.432	0.281	0.313	5e-46
Q7LBC6		1761	Lysine-specific demethyla	no	no	0.149	0.073	0.518	3e-29
Q6ZPY7		1562	Lysine-specific demethyla	no	no	0.149	0.082	0.518	1e-28
P97609		1181	Protein hairless OS=Rattu	no	no	0.352	0.257	0.282	1e-22
O43593		1189	Protein hairless OS=Homo	no	no	0.336	0.243	0.256	1e-20

>sp\|Q5ZIX8\|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1	Back alignment and function desciption

 Score =  216 bits (549), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 161/476 (33%), Positives = 219/476 (46%), Gaps = 109/476 (22%)

Query: 385  ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 431
            ILD+   +L QNR  T TDM      L    +  G D       DN L C      + + 
Sbjct: 909  ILDDIFASLVQNR--TVTDMPKKPQGLTIKPTIMGFDTPHYWLCDNRLLCLQDPNNESNW 966

Query: 432  ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 491
             +FR  + W +G+PV+V  V  K+    W P        E+   E   +  EV  ++C  
Sbjct: 967  NVFR--ECWKQGQPVMVSGVHHKLNADLWRP--------ESFRKEFGQQ--EVDLVNC-- 1012

Query: 492  SCEVEISTRQFFKGYTQGRTYDNFW------------PEMLKLKDWPPSDKFEDLMPRHC 539
                   T +   G T G  +D F             P +LKLKDWPP + F D+MP   
Sbjct: 1013 ------RTNEIITGATVGDFWDGFEDISSRLRTEEGEPMVLKLKDWPPGEDFRDMMPSRF 1066

Query: 540  DEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC 599
            D+ +  +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH 
Sbjct: 1067 DDLMKNIPLPEYTR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHL 1125

Query: 600  DMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKE 659
            D+SDA N++ +             + + + +   + LK   +QDG               
Sbjct: 1126 DVSDAANVMVYV-----------GIPKGQADQEEEVLKT--IQDG--------------- 1157

Query: 660  DTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPK 719
            D+D   I             F  SR                  E  GALW I+  +D  K
Sbjct: 1158 DSDELTIK-----------RFTESR------------------EKPGALWHIYAAKDTEK 1188

Query: 720  LEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEA 779
            +  +L+K  +E      +PV+    PIHDQ +YL    +K+L +E+GV+ W   Q LG+ 
Sbjct: 1189 IREFLKKVAEE--QGQENPVDH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDV 1244

Query: 780  VFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEV 835
            VFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L   H   EDKL+V
Sbjct: 1245 VFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQV 1300

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Preferentially demethylates mono- and dimethylated H3 'Lys-9' residue, with a preference for dimethylated residue, while it has weak or no activity on trimethylated H3 'Lys-9'. Demethylation of Lys residue generates formaldehyde and succinate.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q9Y4C1\|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4	Back alignment and function description

>sp\|Q63679\|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1	Back alignment and function description

>sp\|Q6IRB8\|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2 SV=1	Back alignment and function description

>sp\|Q5HZN1\|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2 SV=1	Back alignment and function description

>sp\|Q6PCM1\|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1	Back alignment and function description

>sp\|Q7LBC6\|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2	Back alignment and function description

>sp\|Q6ZPY7\|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2	Back alignment and function description

>sp\|P97609\|HAIR_RAT Protein hairless OS=Rattus norvegicus GN=Hr PE=2 SV=2	Back alignment and function description

>sp\|O43593\|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		863
255554791		1122	conserved hypothetical protein [Ricinus	0.738	0.567	0.668	0.0
356564476		843	PREDICTED: uncharacterized protein LOC10	0.851	0.871	0.552	0.0
356520089		843	PREDICTED: uncharacterized protein LOC10	0.719	0.736	0.623	0.0
224118074		693	predicted protein [Populus trichocarpa]	0.695	0.865	0.636	0.0
224115858		700	predicted protein [Populus trichocarpa]	0.702	0.865	0.639	0.0
359483388		864	PREDICTED: uncharacterized protein LOC10	0.714	0.714	0.622	0.0
356557939		1043	PREDICTED: uncharacterized protein LOC10	0.716	0.592	0.625	0.0
147800953		1016	hypothetical protein VITISV_038746 [Viti	0.713	0.606	0.630	0.0
357480367		870	Lysine-specific demethylase 3A-B [Medica	0.721	0.716	0.616	0.0
186478394		875	Transcription factor jumonji (jmjC) doma	0.721	0.712	0.587	0.0

>gi\|255554791\|ref\|XP_002518433.1\| conserved hypothetical protein [Ricinus communis] gi\|223542278\|gb\|EEF43820.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/651 (66%), Positives = 519/651 (79%), Gaps = 14/651 (2%)

Query: 194  VKTSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLC 253
            +KTSK ++TD EKV+HL+YL+ S+LPF+ QICEEQT E++ EASIQ    S   ++E  C
Sbjct: 462  IKTSKRDITDREKVQHLQYLIKSMLPFLEQICEEQTCEMQIEASIQ---GSSPEIAENFC 518

Query: 254  GNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYM 313
             NDERVYCNHCATSI+D HRSCPKC+YELCL CCKEI EG LS  AE++  YVNRGY YM
Sbjct: 519  NNDERVYCNHCATSIVDFHRSCPKCAYELCLGCCKEIREGSLSSHAEIELHYVNRGYDYM 578

Query: 314  QGGDPLPESCLHQTPDVHVEPSV-MWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWI 372
             GGDPLP  C  +  D  +EP V +W+A+++G+ISC P EMGGCGD +LEL RILP  WI
Sbjct: 579  HGGDPLP--CDSKNLDDQIEPLVTLWNANNDGSISCAPKEMGGCGDNLLELKRILPMGWI 636

Query: 373  SDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEE 432
            S+L  + R+L+ + DN+ T+L  N +E G+D L KAASREGS+DN L+CP    IQ D+E
Sbjct: 637  SELIWKGRELLKLFDNEKTSLMCNYSEPGSDTLRKAASREGSEDNYLFCPALNGIQADQE 696

Query: 433  LFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLAS 492
            L RFQKHW+KGEPVIVR+ L+  T LSWEPMVMWRALCENVD E ++KMSEVKAIDCLAS
Sbjct: 697  LLRFQKHWLKGEPVIVRDTLEVTTHLSWEPMVMWRALCENVDLETNAKMSEVKAIDCLAS 756

Query: 493  CEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 552
            C+VEI+TRQFFKGYT GRTY+NFWPEMLKLKDWPPSDKFEDL+PRHCDEFISALPFQEYS
Sbjct: 757  CQVEINTRQFFKGYTGGRTYENFWPEMLKLKDWPPSDKFEDLLPRHCDEFISALPFQEYS 816

Query: 553  DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTE 612
            DP+AGILN+AVK P G+LKPDLGPKTYIAYG  EELGRGDSVTKLHCDMSDAVNILTH  
Sbjct: 817  DPKAGILNIAVKFPPGLLKPDLGPKTYIAYGTKEELGRGDSVTKLHCDMSDAVNILTHAV 876

Query: 613  EVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNS---DNNKEDTDVSEINDS 669
            EV L+EEQ + +E+LK +H AQD KE L +D ++  + E      D+  ED D+ +I ++
Sbjct: 877  EVALSEEQSTCIEQLKMKHSAQDEKEYLERDKVNSHLIEQLDECIDSLSEDMDLLKIRET 936

Query: 670  ELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFK 729
            E   S +  +     +E++G   T   +      S GALWDIFRR+DVPKLE YLRK+  
Sbjct: 937  EKHSSALETD-----NELRGDTPTDESTGAATAGSSGALWDIFRREDVPKLEEYLRKYHM 991

Query: 730  EFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQ 789
            EFRH YCSPVE+V+HPIHDQCFYL+ EHK+KLKEE+GVEPWTFEQ++GEA+FIPAGCPHQ
Sbjct: 992  EFRHTYCSPVEKVVHPIHDQCFYLTLEHKRKLKEEYGVEPWTFEQRVGEAIFIPAGCPHQ 1051

Query: 790  VRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFI 840
            VRNLKSCTKVAVDFVSPEN+ ECL LT+EFR LPKNHRAREDKLE+  + +
Sbjct: 1052 VRNLKSCTKVAVDFVSPENIHECLLLTEEFRQLPKNHRAREDKLEIKKMIV 1102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356564476\|ref\|XP_003550480.1\| PREDICTED: uncharacterized protein LOC100806419 [Glycine max]	Back alignment and taxonomy information

>gi\|356520089\|ref\|XP_003528698.1\| PREDICTED: uncharacterized protein LOC100797860 [Glycine max]	Back alignment and taxonomy information

>gi\|224118074\|ref\|XP_002331551.1\| predicted protein [Populus trichocarpa] gi\|222873775\|gb\|EEF10906.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224115858\|ref\|XP_002317142.1\| predicted protein [Populus trichocarpa] gi\|222860207\|gb\|EEE97754.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359483388\|ref\|XP_002264179.2\| PREDICTED: uncharacterized protein LOC100250303 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356557939\|ref\|XP_003547267.1\| PREDICTED: uncharacterized protein LOC100801772 [Glycine max]	Back alignment and taxonomy information

>gi\|147800953\|emb\|CAN60121.1\| hypothetical protein VITISV_038746 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357480367\|ref\|XP_003610469.1\| Lysine-specific demethylase 3A-B [Medicago truncatula] gi\|355511524\|gb\|AES92666.1\| Lysine-specific demethylase 3A-B [Medicago truncatula]	Back alignment and taxonomy information

>gi\|186478394\|ref\|NP_172659.3\| Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi\|225897914\|dbj\|BAH30289.1\| hypothetical protein [Arabidopsis thaliana] gi\|332190699\|gb\|AEE28820.1\| Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		863
TAIR\|locus:2008875		875	AT1G11950 "AT1G11950" [Arabido	0.531	0.524	0.599	1.6e-206
TAIR\|locus:2027109		883	AT1G62310 "AT1G62310" [Arabido	0.551	0.539	0.567	2.7e-204
TAIR\|locus:2125221		840	AT4G00990 "AT4G00990" [Arabido	0.529	0.544	0.424	3.3e-145
TAIR\|locus:2036014		944	AT1G09060 "AT1G09060" [Arabido	0.546	0.5	0.352	9.6e-101
TAIR\|locus:2141221		927	B160 "AT4G21430" [Arabidopsis	0.559	0.521	0.312	8.8e-71
MGI\|MGI:1923356		1562	Kdm3b "KDM3B lysine (K)-specif	0.149	0.082	0.481	5.8e-49
UNIPROTKB\|E1BE97		1759	LOC100848816 "Uncharacterized	0.149	0.073	0.481	7.2e-49
UNIPROTKB\|Q7LBC6		1761	KDM3B "Lysine-specific demethy	0.149	0.073	0.481	7.2e-49
UNIPROTKB\|F1RH75		1766	KDM3B "Uncharacterized protein	0.149	0.073	0.481	1.5e-48
UNIPROTKB\|Q9Y4C1		1321	KDM3A "Lysine-specific demethy	0.149	0.097	0.458	7.1e-48

TAIR\|locus:2008875 AT1G11950 "AT1G11950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1472 (523.2 bits), Expect = 1.6e-206, Sum P(2) = 1.6e-206
 Identities = 277/462 (59%), Positives = 344/462 (74%)

Query:   194 VKTSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLC 253
             ++TSK  +   E+  HLR+L+V++LPF++++C+ Q QEIE EA +Q   +S+V +SE+LC
Sbjct:   255 IETSKRKLDKYERFYHLRFLIVAMLPFLKKLCKAQDQEIETEAKVQDSMASQVDISESLC 314

Query:   254 GNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYM 313
              N+ERV+CNHCATSI+DLHRSCPKCSYELCL CC+EI  G LS R E + Q+  RG  Y+
Sbjct:   315 SNEERVFCNHCATSIVDLHRSCPKCSYELCLNCCQEIRGGWLSDRPECQLQFEYRGTRYI 374

Query:   314 QGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWIS 373
              G    P S    + D    PS+ W+AD+NG+I C P E+GGCGD VLEL RILP  W+S
Sbjct:   375 HGEAAEPSSS-SVSEDETKTPSIKWNADENGSIRCAPKELGGCGDSVLELKRILPVTWMS 433

Query:   374 DLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEEL 433
             DLE++A   +     K        +   + M  KAASR+GS DN LY PDS  + + EEL
Sbjct:   434 DLEQKAETFLASYSIKPPMSYCRCSSDMSSMKRKAASRDGSSDNYLYSPDSLDVLKQEEL 493

Query:   434 FRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASC 493
               FQ+HW KGEPVIVRN L+   GLSWEPMVMWRALCENVDS +SS MS+VKAIDCLA+C
Sbjct:   494 LHFQEHWSKGEPVIVRNALNNTAGLSWEPMVMWRALCENVDSAISSNMSDVKAIDCLANC 553

Query:   494 EVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSD 553
             EV+I+T  FF+GY++GRTY+NFWPEMLKLKDWPPSDKFE+L+PRHCDEFISALPFQEYSD
Sbjct:   554 EVKINTLCFFEGYSKGRTYENFWPEMLKLKDWPPSDKFENLLPRHCDEFISALPFQEYSD 613

Query:   554 PRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIXXXXXX 613
             PR+GILN+A KLP G+LKPDLGPKTY+AYG ++ELGRGDSVTKLHCDMSDAVNI      
Sbjct:   614 PRSGILNIATKLPEGLLKPDLGPKTYVAYGTSDELGRGDSVTKLHCDMSDAVNILMHTAE 673

Query:   614 XXXXXXQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSD 655
                   Q SA+  LK++H+ Q+ KE   Q+G++E  EE  SD
Sbjct:   674 VTLSEEQRSAIADLKQKHKQQNEKELQEQNGLEE--EEVVSD 713

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR\|locus:2027109 AT1G62310 "AT1G62310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125221 AT4G00990 "AT4G00990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036014 AT1G09060 "AT1G09060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2141221 B160 "AT4G21430" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:1923356 Kdm3b "KDM3B lysine (K)-specific demethylase 3B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BE97 LOC100848816 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7LBC6 KDM3B "Lysine-specific demethylase 3B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RH75 KDM3B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y4C1 KDM3A "Lysine-specific demethylase 3A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		863
pfam02373		114	pfam02373, JmjC, JmjC domain, hydroxylase	3e-16
smart00558		58	smart00558, JmjC, A domain family that is part of	1e-08

>gnl\|CDD\|202224 pfam02373, JmjC, JmjC domain, hydroxylase	Back alignment and domain information

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 693 TCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRK-HFKEFRHVYCSPVEQVIHPIHDQCF 751
           T  H E          +  F    V  +        F++      S       P      
Sbjct: 11  TPWHIE--DQGLYSINYLHFGGPKVWYIIPSEYAEKFEKV----LSKHNGGEQPDL-LLH 63

Query: 752 YLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDF 803
             +    K+L E  G+  + F QK GE VF   G  HQV NL      AV+F
Sbjct: 64  LNTIISPKQLLEN-GIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114

>gnl\|CDD\|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		863
KOG1356		889	consensus Putative transcription factor 5qNCA, con	100.0
PF02373		114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	99.52
PF13621		251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	99.0
smart00558		57	JmjC A domain family that is part of the cupin met	96.63
KOG2131		427	consensus Uncharacterized conserved protein, conta	95.88
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	95.82
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	95.37
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	95.29
KOG1356		889	consensus Putative transcription factor 5qNCA, con	94.95
cd02339		45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	94.67
PF00569		46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	94.6
smart00291		44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	93.85
cd02344		45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	93.36
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	93.07
cd02341		48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	92.93
COG1917		131	Uncharacterized conserved protein, contains double	92.81
cd02345		49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	91.7
KOG2130		407	consensus Phosphatidylserine-specific receptor Ptd	91.54
cd02338		49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	91.31
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	90.37
cd02337		41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	88.74
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	87.63
cd02334		49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	87.2
PRK09943		185	DNA-binding transcriptional repressor PuuR; Provis	84.12
cd02343		48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	83.23
PRK13290		125	ectC L-ectoine synthase; Reviewed	81.67
PF07649		30	C1_3: C1-like domain; InterPro: IPR011424 This sho	81.43

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.1e-168  Score=1429.82  Aligned_cols=594  Identities=42%  Similarity=0.692  Sum_probs=524.4

Q ss_pred             CCCCcccccccCCCCccccc--cccccccccc----CChhhHHHHHH--HHHHHHhhhhhhcCHHHhhhhhhhhhhcccc
Q 002957          171 SSGSSDSVLKSNSNNNGRCT--ARNVKTSKIN----MTDCEKVEHLR--YLMVSLLPFIRQICEEQTQEIEFEASIQRVH  242 (863)
Q Consensus       171 ~~~ss~~~~~~~~~~~~~C~--~~~~k~~~~e----is~~~k~~~~~--yll~~lLP~Lkqi~~EQ~~E~EiEaki~G~~  242 (863)
                      ..+-.+.++.+.||+. .|.  +....+.+..    .+..+++.++.  |+|..++|+|+.++..|-.+.+.||+|||..
T Consensus       269 e~a~k~~~~~~~C~~~-q~h~~~~Lm~Tq~i~~~al~~~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~  347 (889)
T KOG1356|consen  269 EVAEKCEFSWLKCNKG-QCHALSELMPTQIIPGSALLDLSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTE  347 (889)
T ss_pred             HhhhhhhHHHHhcCCc-cccchhhcccccccchhhhhhHHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCC
Confidence            3455678888888874 554  4445666666    77889999999  9999999999999999999999999999999


Q ss_pred             CCcccccccccCCCCceecCCCCcccccccccCCCCCcccchhchHHHhcCcCCCccccceeeeccCCccccCCCCCCCc
Q 002957          243 SSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPES  322 (863)
Q Consensus       243 ~~e~~i~~a~~~~DERv~CD~CkTSI~D~HRsC~~CsyDLCL~CC~ELR~G~l~g~~~~~~~~~~rg~~y~~g~~~~~~~  322 (863)
                      +++ +++.+.++++|++|||+|.|||.|+||+||+|+|++||.||.+||+|.+.-..+..+.|.+||..|.||.++...+
T Consensus       348 ~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~  426 (889)
T KOG1356|consen  348 PTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYAICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPS  426 (889)
T ss_pred             CCC-CccccccCcCCCccccccccchhhccccCCCccccccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccc
Confidence            988 7777888889999999999999999999999999999999999999988777666888999999999998875433


Q ss_pred             cCCCCCCCCCCCCcccccCCCCCccCCCCCCCCCCCccccccccCcchhHHHHHHHHHHHHHHhcccccccccC-ccccC
Q 002957          323 CLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQN-RAETG  401 (863)
Q Consensus       323 ~~~~~~~~~~~~~~~W~a~~dGSIpCpPke~GgCg~s~L~Lrrifp~nwis~L~~~aee~~~~~~~~~~~~~~C-s~~~~  401 (863)
                      -.....+.   +.+   ++++|+|.|-|...+||+...|+|+|++|.-|.+.++..||.-+..+-+.... .-| +...+
T Consensus       427 ~~s~~~~~---~~~---~~~ng~~r~l~~~~~g~~~~~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l-~~~~~~~~~  499 (889)
T KOG1356|consen  427 LSSVSVDE---PSS---ANENGSLRDLLLSLAGCLDRGLKLKRILPNILDSIIASVVENKLTSKLSKPPL-RLCRSSQDG  499 (889)
T ss_pred             cCCCCCCC---Ccc---cccccchhhcccccCccchhhhhhhhcCchHHHHHHHHHHHhhcccccCCchh-hcCcccccc
Confidence            22111111   112   88999999999999999999999999999999999999999887775554432 223 22345


Q ss_pred             cccchhccccCCCCCCeeecCCCCCCCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccc
Q 002957          402 TDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKM  481 (863)
Q Consensus       402 ~~~lrkAA~Re~S~DN~LYcP~~~di~~~d~l~hFQ~HW~kGePVIVr~Vl~~~s~lsWeP~~mwra~~e~~~~~~~d~~  481 (863)
                      .+.++++|.|+.+.|||||||.+.+.+. +||.|||+||++|||||||||++++++++|+||+|||+|+++.+.-..-.+
T Consensus       500 ~~~~~s~~~~~~~cdn~Ll~l~~d~~~~-~n~~~FQEhWkqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~  578 (889)
T KOG1356|consen  500 SGLLLSAASHSWLCDNRLLSLKVDPLNQ-NNLKHFQEHWKQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNN  578 (889)
T ss_pred             ccCccccCCCCcCCCCceecCccCccch-hHHHHHHHHHhcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCC
Confidence            6778899999999999999999944555 999999999999999999999999999999999999999998766666667


Q ss_pred             CceeEeecCCCceeecchhhhhccccCCccCCCCCcceeeccCCCCCCchhhhcccchHHHHhCCCccccCCCCCccccc
Q 002957          482 SEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNL  561 (863)
Q Consensus       482 ~~vkaIDCld~~eVei~v~qFF~Gy~~gr~~~ngwp~mLKLKDWPps~~Fee~LPrh~~EFi~aLP~pEYT~Pr~G~LNL  561 (863)
                      .++.++||++      ++.+||.||++|+++++|||+|||||||||+++|+++||+||+|||++|||||||| ++|+|||
T Consensus       579 ~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNl  651 (889)
T KOG1356|consen  579 SQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNL  651 (889)
T ss_pred             CCccccchhh------hHHHhhcccccCcccccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccch
Confidence            7788888888      78999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             cccCCCCCCCCCCCcchhhccccccccCCCCCcccccccccchhhhhhcccccccchhhHHHHHHHHHHHHHhhhhhhhc
Q 002957          562 AVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLV  641 (863)
Q Consensus       562 AskLP~~~lkPDLGPK~YIAYG~~eelGrGDSVTkLHcDmSDAVNIL~HtaeV~~~~~q~~~I~kLk~k~~~q~~~e~~~  641 (863)
                      |++||.+|++||||||||||||+++++|||||||||||||||||||||||++++.   +...|+++++++.+++..|+.-
T Consensus       652 As~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILvyv~e~~~---~~~~~~~~~k~~~~~~~de~~~  728 (889)
T KOG1356|consen  652 ASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILVYVGEPPG---QIEQIAKVLKKIQEGDLDEITR  728 (889)
T ss_pred             HhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhhhhhheeeeccCCc---hHHhHHHHHHhhhhcchhhhhh
Confidence            9999999999999999999999999999999999999999999999999998776   4455666666655443322210


Q ss_pred             cCCCCccccCCCCCCCCCCCccccccccCCCCCCcccccccccccccCCccccCCCCCCcCCCCceEEEeecCCChhHHH
Q 002957          642 QDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLE  721 (863)
Q Consensus       642 ~~~~~~~~~e~~~d~~~~d~~~~~~~~~e~~~s~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~GALWDIFRreDvpKLr  721 (863)
                      .                      ++                              .  +..+.+||||||||||||||||
T Consensus       729 ~----------------------~~------------------------------~--~~~e~~GALWhIF~~~Dv~Kir  754 (889)
T KOG1356|consen  729 S----------------------RI------------------------------S--SVSETPGALWHIFRAQDVPKIR  754 (889)
T ss_pred             h----------------------hc------------------------------c--ccccCCcchhhhhhhcchHHHH
Confidence            0                      00                              0  0136899999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCcccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeec
Q 002957          722 AYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV  801 (863)
Q Consensus       722 eYL~kh~~EFrh~~~~pv~~v~dPIHDQsfYLd~ehk~rLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl  801 (863)
                      |||+||.+||+|    ++.+|+||||||+||||.+||+|||||||||||||+|+||||||||||||||||||+||||||+
T Consensus       755 eyL~k~~~E~~~----~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~  830 (889)
T KOG1356|consen  755 EYLRKVCKEQGH----EVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAE  830 (889)
T ss_pred             HHHHHhhHHhcC----CCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHH
Confidence            999999999998    7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccHHHHHHHHHHhhcCChhhhcccchhcccceehhh
Q 002957          802 DFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKR  842 (863)
Q Consensus       802 DFVSPEnV~eC~rLTeEfR~LP~~H~akEDKLEVKkm~lh~  842 (863)
                      ||||||||.||+|||+|||+||++|.|||||||||||+||+
T Consensus       831 DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~mi~hA  871 (889)
T KOG1356|consen  831 DFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNMIYHA  871 (889)
T ss_pred             hhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []	Back alignment and domain information

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A	Back alignment and domain information

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type	Back alignment and domain information

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein	Back alignment and domain information

>cd02344 ZZ_HERC2 Zinc finger, ZZ type	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>cd02345 ZZ_dah Zinc finger, ZZ type	Back alignment and domain information

>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02337 ZZ_CBP Zinc finger, ZZ type	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>cd02334 ZZ_dystrophin Zinc finger, ZZ type	Back alignment and domain information

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional	Back alignment and domain information

>cd02343 ZZ_EF Zinc finger, ZZ type	Back alignment and domain information

>PRK13290 ectC L-ectoine synthase; Reviewed	Back alignment and domain information

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		863
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		2e-17
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		4e-17

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Iteration: 1

Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 14/175 (8%) Query: 436 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 495 F++ W +G+P +V V K+ + +W+A E++ + +++ ++C S Sbjct: 27 FKECWKQGQPAVVSGVHKKMN------ISLWKA--ESISLDFGDHQADL--LNCKDSIIS 76 Query: 496 EISTRQFFKGYTQ-GRTYDNFWPE--MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 552 + ++F+ G+ + + N E +LKLKDWP + F+ +MP ++ + +LP EY Sbjct: 77 NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 136 Query: 553 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 607 +P G NLA LP ++PDLGP+ AYGV T LH ++SD VNI Sbjct: 137 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNI 190

PyMOL of 2ypd

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		863
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	4e-09
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	2e-07
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	6e-07
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	2e-06
3kv9_A		397	JMJC domain-containing histone demethylation prote	4e-06
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	7e-06
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	2e-05
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	1e-04
3kv5_D		488	JMJC domain-containing histone demethylation prote	2e-04
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	2e-04
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 84.1 bits (207), Expect = 1e-16
 Identities = 107/715 (14%), Positives = 192/715 (26%), Gaps = 214/715 (29%)

Query: 203 DCEKVEH-LRY---LMVSLLPFIRQI-C---EEQTQEIEFEASIQRVHSSKVGVSET--- 251
           D E  EH  +Y   L V    F+    C   ++  + I  +  I  +  SK  VS T   
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 252 ---LCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNR 308
              L    E +        + ++ R     +Y+  ++  K       S    M  +  +R
Sbjct: 68  FWTLLSKQEEMV----QKFVEEVLRI----NYKFLMSPIKTEQRQP-SMMTRMYIEQRDR 118

Query: 309 GYGYMQGGDPLP----------ESCLHQ---TPDVHVEPSVMWSADDNGTISCPPTEMGG 355
            Y   Q                   L +     +V ++          G        + G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----------G--------VLG 160

Query: 356 CGDCVL--------ELTRILPDR--WIS-DLEKEARDLVLILDNKLTNLRQNRAETGTDM 404
            G   +        ++   +  +  W++         ++ +L   L  +  N        
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-------- 212

Query: 405 LCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMV 464
                SR     N+     S +     EL R  K       ++   VL  V         
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLL---VLLNV----QNAKA 258

Query: 465 MWRAL---CENVDSEVSSKMSEVKAIDCL-ASCEVEISTRQFFKGYTQGRTYDNF--WPE 518
            W A    C+ +   ++++  +V   D L A+    IS        T          + +
Sbjct: 259 -WNAFNLSCKIL---LTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 519 MLKLKDWPPSDKFEDLMPRHCD---EFISALP--FQEYSDPRAGILNLAVKLPSGVLKPD 573
             + +D P         PR      E I      +  +       L   ++    VL+P 
Sbjct: 313 C-RPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 574 LGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVER-LKKEHR 632
              K +    V                   + +I T    ++  +   S V   + K H+
Sbjct: 370 EYRKMFDRLSV----------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 633 AQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAF 692
              +++                   KE T    I    L       E K+  +       
Sbjct: 414 YSLVEK-----------------QPKEST--ISIPSIYL-------ELKVKLENEYAL-- 445

Query: 693 TCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQ--C 750
              H                R      ++ Y     K F      P      P  DQ   
Sbjct: 446 ---H----------------RSI----VDHY--NIPKTFDSDDLIP------PYLDQYFY 474

Query: 751 FYLSSEHKKKLK--EEFGVEPWTF------EQKLGEAVFIPAGCPHQVRNLKSCTKVAVD 802
            ++   H K ++  E   +    F      EQK+             + N          
Sbjct: 475 SHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQ------Q 526

Query: 803 FVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFIL 857
                     L+  K +  +  N    E  +   L F+ +    + I S +  +L
Sbjct: 527 ----------LKFYKPY--ICDNDPKYERLVNAILDFLPK-IEENLICSKYTDLL 568

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		863
2ypd_A		392	Probable JMJC domain-containing histone demethyla	100.0
4gjz_A		235	Lysine-specific demethylase 8; JMJC, beta barrel,	99.2
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	99.14
3kv5_D		488	JMJC domain-containing histone demethylation prote	99.04
3al5_A		338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	98.9
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	98.84
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	98.84
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	98.77
3d8c_A		349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	98.76
3kv9_A		397	JMJC domain-containing histone demethylation prote	98.73
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	98.62
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	97.47
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	97.25
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	97.15
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	96.58
3dxt_A		354	JMJC domain-containing histone demethylation PROT;	96.02
3opt_A		373	DNA damage-responsive transcriptional repressor R;	95.07
2ox0_A		381	JMJC domain-containing histone demethylation PROT;	94.8
1vrb_A		342	Putative asparaginyl hydroxylase; 2636534, structu	93.02
1yhf_A		115	Hypothetical protein SPY1581; structural genomics,	92.01
2opk_A		112	Hypothetical protein; putative mannose-6-phosphate	91.96
2pfw_A		116	Cupin 2, conserved barrel domain protein; cupin do	91.81
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	91.63
3fjs_A		114	Uncharacterized protein with RMLC-like cupin fold;	91.49
2fc7_A		82	ZZZ3 protein; structure genomics, ZZ domain, struc	91.29
2q30_A		110	Uncharacterized protein; double-stranded beta-heli	91.21
3lag_A		98	Uncharacterized protein RPA4178; functionally unkn	90.92
3h8u_A		125	Uncharacterized conserved protein with double-STR	90.86
1v70_A		105	Probable antibiotics synthesis protein; structural	90.75
4e2g_A		126	Cupin 2 conserved barrel domain protein; MCSG, PSI	90.33
2ozj_A		114	Cupin 2, conserved barrel; cupin superfamily prote	90.04
1tot_A		52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	90.02
2dip_A		98	Zinc finger SWIM domain-containing protein 2; ZZ d	90.02
2b8m_A		117	Hypothetical protein MJ0764; structural genomics,	89.88
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	89.57
3d82_A		102	Cupin 2, conserved barrel domain protein; structur	89.53
2xlg_A		239	SLL1785 protein, CUCA; metal binding protein, cupi	89.5
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	89.02
2fqp_A		97	Hypothetical protein BP2299; double-stranded beta-	89.0
1o5u_A		101	Novel thermotoga maritima enzyme TM1112; cupin, st	88.74
3ibm_A		167	Cupin 2, conserved barrel domain protein; cupin 2	88.72
3kgz_A		156	Cupin 2 conserved barrel domain protein; metallopr	88.41
2e5r_A		63	Dystrobrevin alpha; ZZ domain, structural genomics	87.9
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	87.78
2i45_A		107	Hypothetical protein; neisseria meningitidis cupin	86.52
1y9q_A		192	Transcriptional regulator, HTH_3 family; transcrip	86.3
2ozi_A		98	Hypothetical protein RPA4178; APC6210, putative pr	86.2
1lr5_A		163	Auxin binding protein 1; beta jellyroll, double st	85.88
3cew_A		125	Uncharacterized cupin protein; all beta-protein, j	85.49
2oa2_A		148	BH2720 protein; 10175341, structural genomics, joi	85.2
3l2h_A		162	Putative sugar phosphate isomerase; AFE_0303, stru	84.99
4i4a_A		128	Similar to unknown protein; structural genomics, P	84.94
3jzv_A		166	Uncharacterized protein RRU_A2000; structural geno	84.44
1vj2_A		126	Novel manganese-containing cupin TM1459; structura	84.27
4axo_A		151	EUTQ, ethanolamine utilization protein; structural	83.76
1x82_A		190	Glucose-6-phosphate isomerase; cupin superfamily,	82.66
3lwc_A		119	Uncharacterized protein; structural genomics, unkn	82.53
2o8q_A		134	Hypothetical protein; cpuin-like fold, structural	82.26
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	81.82
2bnm_A		198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	81.4
3bcw_A		123	Uncharacterized protein; structural genomics, join	81.02
1y3t_A		337	Hypothetical protein YXAG; BI cupin, dioxygenase,	80.67

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.4e-130  Score=1060.84  Aligned_cols=352  Identities=32%  Similarity=0.547  Sum_probs=271.9

Q ss_pred             CCCCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhcccccccccCceeEeecCCCceeecchhhhhc
Q 002957          425 TKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFK  504 (863)
Q Consensus       425 ~di~~~d~l~hFQ~HW~kGePVIVr~Vl~~~s~lsWeP~~mwra~~e~~~~~~~d~~~~vkaIDCld~~eVei~v~qFF~  504 (863)
                      .|..+.+|++|||+||++|||||||||++++++++|+|++||++|++.          .+++|||++|++++|++++||+
T Consensus        16 ~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff~   85 (392)
T 2ypd_A           16 KDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFWD   85 (392)
T ss_dssp             CCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHHH
T ss_pred             cCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHhh
Confidence            344556899999999999999999999999999999999999998642          3678999999999999999999


Q ss_pred             cccCCc---cCCCCCcceeeccCCCCCCchhhhcccchHHHHhCCCccccCCCCCccccccccCCCCCCCCCCCcchhhc
Q 002957          505 GYTQGR---TYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIA  581 (863)
Q Consensus       505 Gy~~gr---~~~ngwp~mLKLKDWPps~~Fee~LPrh~~EFi~aLP~pEYT~Pr~G~LNLAskLP~~~lkPDLGPK~YIA  581 (863)
                      ||++++   ++++|||+|||||||||+++|+++||+||+|||++|||||||||+ |+||||++||+++++||||||||||
T Consensus        86 Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiA  164 (392)
T 2ypd_A           86 GFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSA  164 (392)
T ss_dssp             TSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEE
T ss_pred             hccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhh
Confidence            999875   357999999999999999999999999999999999999999985 9999999999999999999999999


Q ss_pred             cccccccCCCCCcccccccccchhhhhhcccccccchhhHHHHHHHHHHHHHhhhhhhhccCCCCccccCCCCCCCCCCC
Q 002957          582 YGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDT  661 (863)
Q Consensus       582 YG~~eelGrGDSVTkLHcDmSDAVNIL~HtaeV~~~~~q~~~I~kLk~k~~~q~~~e~~~~~~~~~~~~e~~~d~~~~d~  661 (863)
                      ||+++++|+|+|||||||||||||||||||+.++... ..... ...+++.+++..+.+                     
T Consensus       165 YG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~~~d~~~---------------------  221 (392)
T 2ypd_A          165 YGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEEDLDDIL---------------------  221 (392)
T ss_dssp             CCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTSCCCHHH---------------------
T ss_pred             cCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhccccHHH---------------------
Confidence            9999999999999999999999999999998654222 11111 111222111110000                     


Q ss_pred             ccccccccCCCCCCcccccccccccccCCccccCCCCCCcCCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCc
Q 002957          662 DVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQ  741 (863)
Q Consensus       662 ~~~~~~~~e~~~s~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~GALWDIFRreDvpKLreYL~kh~~EFrh~~~~pv~~  741 (863)
                         +              .++.                +..+.+||+||||||||++|||+||++|++||    |.++.+
T Consensus       222 ---~--------------~r~~----------------~~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~----~~~~~~  264 (392)
T 2ypd_A          222 ---R--------------KRLK----------------DSSEIPGALWHIYAGKDVDKIREFLQKISKEQ----GLEVLP  264 (392)
T ss_dssp             ---H--------------HHHT----------------CTTCCEEEEEEEECGGGHHHHHHHHHHHHHHH----C-----
T ss_pred             ---h--------------hhcc----------------CCCCCCCceeeeeCHhhHHHHHHHHHHHHHhh----CCCccC
Confidence               0              0000                01357899999999999999999999999998    356788


Q ss_pred             ccCCcccCccccCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCcccHHHHHHHHHHhhc
Q 002957          742 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRL  821 (863)
Q Consensus       742 v~dPIHDQsfYLd~ehk~rLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLTeEfR~  821 (863)
                      +.||||||+||||.+||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+
T Consensus       265 ~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~  344 (392)
T 2ypd_A          265 EHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL  344 (392)
T ss_dssp             -CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred             CCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhcccchhcccceehhhhhhhhh
Q 002957          822 LPKNHRAREDKLEVYLVFIKRKCYVHE  848 (863)
Q Consensus       822 LP~~H~akEDKLEVKkm~lh~~~~~~e  848 (863)
                      || +|++||||||||||+||++..+..
T Consensus       345 l~-~~~~~edkLqvk~m~~~av~~av~  370 (392)
T 2ypd_A          345 LK-EEINYDDKLQVKNILYHAVKEMVR  370 (392)
T ss_dssp             ---------------------------
T ss_pred             cc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            96 699999999999999999655543

PyMOL of 2ypd

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*	Back alignment and structure

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}	Back alignment and structure

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*	Back alignment and structure

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*	Back alignment and structure

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*	Back alignment and structure

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*	Back alignment and structure

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*	Back alignment and structure

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11	Back alignment and structure

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9	Back alignment and structure

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}	Back alignment and structure

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A	Back alignment and structure

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}	Back alignment and structure

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}	Back alignment and structure

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A	Back alignment and structure

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}	Back alignment and structure

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}	Back alignment and structure

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6	Back alignment and structure

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}	Back alignment and structure

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A	Back alignment and structure

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}	Back alignment and structure

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A	Back alignment and structure

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}	Back alignment and structure

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}	Back alignment and structure

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}	Back alignment and structure

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15	Back alignment and structure

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*	Back alignment and structure

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}	Back alignment and structure

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}	Back alignment and structure

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}	Back alignment and structure

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}	Back alignment and structure

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}	Back alignment and structure

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10	Back alignment and structure

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}	Back alignment and structure

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*	Back alignment and structure

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}	Back alignment and structure

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A	Back alignment and structure

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}	Back alignment and structure

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		863
d1vrba1		319	b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla	2e-04

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 759 KKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 810
               +E   +        G  +++P G  H  ++ ++   + + F  P  +D
Sbjct: 188 GDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLD 239

PyMOL of d1vrba1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		863
d1h2ka_		335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	98.96
d1vrba1		319	Putative asparaginyl hydroxylase YxbC {Bacillus su	98.79
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	94.37
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	94.13
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	93.14
d2fc7a1		69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	92.97
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	92.72
d2dipa1		85	Zinc finger ZZ-type-containing protein 2 {Human (H	91.67
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	91.33
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	90.04
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	90.01
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	88.27
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	86.46
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	84.21
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	81.55

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-10  Score=120.09  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=34.5

Q ss_pred             CccceEEEeecCceEEecCCCccccccccc-cceeeccc
Q 002957          766 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS-CTKVAVDF  803 (863)
Q Consensus       766 GVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS-CIKVAlDF  803 (863)
                      ++.+|.+++.+||++|||+|..|||+||.+ ||.|++-|
T Consensus       243 ~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         243 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             cCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence            457999999999999999999999999965 89999877

PyMOL of d1h2ka_

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure