Citrus Sinensis ID: 002966

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860--

MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEV

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEccEEEEEEccccccccccHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHccccEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEEEccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccc

ccccccccccccccHHHccccccccccccccEEEEcccccccccccccEcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHccccHccccccccHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccEEEEEEcccccHcHHHHHHHHHHHcccEEEEEcccEEEEEEccccccccccccHHHHHHHHHcccHHHHcHHHHHcccccccccccccccccccccccccccccccccccccccccHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccEcccccccccccHHHHHHHHHHHccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccc

malvpsrqfcpataifdsfqssfskfhgthfhffrcghsiplknrffyqnfssnsaheknpprktcsfstnnffsqhdkddnanlcsssswlvkwnkpnkynrlkppqasvnyrknnvdlsalgfartdsdgngvggvddggsTMGKIVEKLKKfgyvgdgdgdgdgdnderrgqgkerviekgsiEDIFYVEegllpnarggfskesplglgeevgsdgevkfpweKRKEEVAEGRWLVkrrssrtslaeltlpesELRRLRNLtfqtksktrikgaGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRgvsyevpsvqlnkriykrnelpassvsqatdKQIHKQIsmsgnslsaaadktaqdpsnfdsynnvHATQVNletaseeqetDFVREVKYEDEVEKLLDglgprytdwpgcdplpvdadmlpgivpgyqppfrvlpygvrstlARKEATNLQRLArvlpphfalgrsRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKltggtllsrnKDFLVfyrgknflspdVTEALQERERLAKSLQDEEEQARLRASAfvlpsietieksgtagtlKETLDAnsrwgkrlddshkENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESlkpaerqadpesitDEERFMFRKLGLRMKAFLLLGrrgvfdgtvenmHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYrgkdyqrpstlrpknLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQmnsvkgtgdeqlydkldsayatedddsev

malvpsrqFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSnsaheknpprKTCSFSTNNFFSQHDKDDNANLCSSSSWlvkwnkpnkynrlkppqasvnyrKNNVDLSALGfartdsdgngvggvddggsTMGKIVEKLKKFgyvgdgdgdgdgdnderrgqgkerviekgsiedIFYVEEGLLPNARGGFSKesplglgeevgsdgevkfpwekrkeevaegrwlvkrrssrtslaeltlpeselrrlrnltfqtksktrikgagltqAVVDIIHekwktseivrlkiegapalnmKRMHEILErktgglviWRSGTAvslyrgvsyevpsvqlnkRIYKRNelpassvsqatdKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNletaseeqetdfvrevkyeDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSsiakialkrgvqlttsermvedikkltggtllsrnkDFLVFYRGKnflspdvtEALQERERLAKSLQDEEEQARLrasafvlpsietieksgtagtlketldansrwgkrlddshkenlvreaevrrhaylVQKLEKKLARAERKLLRAERAlskveeslkpaerqadpesitdeERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALAleaesggvlvsvdkiskGYAMVVyrgkdyqrpstlrpknllTKRKALARSIELQRQEALLKHVATLesnagrlrseieqmnsvkgtgdeqlydkldsayatedddsev

MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTdsdgngvggvddggsTMGKIVEKLKKFGYVgdgdgdgdgdNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQklekklaraerkllraeralSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEV

*******QFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNF**********************************CSSSSWLVKWNKPN******************VDLSALGF********************GKIVEKLKKFGYV*************************GSIEDIFYVEEGLLP**************************************RWLV**********************RNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIY******************************************************************FVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSP*****************************FVL******************************************VRRHAYLVQKL*****************************************RFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ****************************LL************************************************

********FCPATAIFDSFQSSFSKFHGTHF********************************************************************************************************************IVEKLKKFGYV***********************************************************************************************LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEV******************************************************************************************LDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR************************************************************LEKKLARAER***R**************************EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKAL****************ATLESNAGRLR**********************************

MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSS***********TCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELP***********IHKQISMS*************DPSNFDSYNNVHATQVNL*********DFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVE*************SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY*********

*******QFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSN*A*********************************SWLVKW*KPNKYNRLKPPQASVNY*******************************MGKIVEKLKKFGYVG***************************EDIF**EEGLLP**R*************************************************ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELP**************************************************************REVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAY*********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDxxxxxxxxxxxxxxxxxxxxxxxxxASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHxxxxxxxxxxxxxxxxxxxxxKGTGDEQLYDKLDSAYATEDDDSEV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		862	2.2.26 [Sep-21-2011]
Q6YYA3		725	Chloroplastic group IIA i	no	no	0.640	0.761	0.381	1e-104
Q9FYT6		715	Chloroplastic group IIA i	N/A	no	0.570	0.688	0.398	1e-102
Q9LF10		720	Chloroplastic group IIA i	no	no	0.445	0.533	0.445	9e-84
Q67XL4		444	Uncharacterized CRM domai	no	no	0.204	0.396	0.351	2e-24
Q84N48		611	CRS2-associated factor 2,	N/A	no	0.156	0.220	0.322	2e-09
Q6Z4U2		428	CRS2-associated factor 1,	no	no	0.076	0.154	0.418	5e-09
Q657G7		607	CRS2-associated factor 2,	no	no	0.113	0.161	0.363	1e-08
Q0J7J7		366	CRS2-associated factor 2,	no	no	0.142	0.336	0.328	2e-08
Q8VYD9		405	CRS2-associated factor 1,	no	no	0.118	0.251	0.346	9e-08
Q9FFU1		358	CRS2-associated factor 2,	no	no	0.124	0.298	0.309	9e-08

>sp\|Q6YYA3\|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1	Back alignment and function desciption

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/601 (38%), Positives = 348/601 (57%), Gaps = 49/601 (8%)

Query: 224 FPWEKRKEEVAEGRWLVKRRSSRTSL---AELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
            PW   ++E  +   +V RR  +T +   AE  L   EL RLR      +   R K AG+
Sbjct: 125 VPWAAARDEETK---VVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGI 181

Query: 281 TQAVVDIIHEKW-KTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
           T  VV+ +  +W K  E+  ++I       M R  EILE KTGGLV+W  G    +YRG 
Sbjct: 182 TDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGS 241

Query: 340 SYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSY 399
           SY    ++  KR                    H+        LS     T+ +P++   Y
Sbjct: 242 SY----LENAKR--------------------HRDFVNYNEELSPV---TSNNPTSQGKY 274

Query: 400 NNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPG 459
            +   T  N    +++++   ++   YE EV +LLD LGPR+ DW    PLPVDAD+LP 
Sbjct: 275 WSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPE 334

Query: 460 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 519
           +VP ++ PFR  P GVR  LA +E T L++ AR LP HF LGR+ +LQGLA A++KLWEK
Sbjct: 335 VVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEK 394

Query: 520 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQER 579
           S IAK+A+K G+Q T  E+M  ++K+LTGGT++ RNKD+++ YRGK+FL   V E++ ER
Sbjct: 395 SLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIER 454

Query: 580 ERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENL 639
           E      Q +EE+ARL+ +  +   +    +    GT +E  D +    +R  ++   N 
Sbjct: 455 ESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHDSHARRTTEN---NF 511

Query: 640 VREAEVRRHAYLVQKLEKKLARAE-------RKLLRAERALSKVEESLKPAERQADPESI 692
             + E ++H     +LEK+L   E       +K+ R+ + L+K+  S  P+++  D E +
Sbjct: 512 RIQLEAKKH-----RLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELL 566

Query: 693 TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIA 752
           T+EER +FRK+GL+M   +LLGRRGVF+G +E +H HWK++E+VK+I K     Q    +
Sbjct: 567 TEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTS 626

Query: 753 LALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEA 812
           + LE E+GG L+++++ +  +A+++YRGK+Y+RP+   P NLLTKR+AL RSIE+QR+ +
Sbjct: 627 MMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRGS 686

Query: 813 L 813
           +
Sbjct: 687 M 687

Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation.
Oryza sativa subsp. japonica (taxid: 39947)

>sp\|Q9FYT6\|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1	Back alignment and function description

>sp\|Q9LF10\|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2	Back alignment and function description

>sp\|Q67XL4\|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1	Back alignment and function description

>sp\|Q84N48\|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1	Back alignment and function description

>sp\|Q6Z4U2\|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1	Back alignment and function description

>sp\|Q657G7\|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1	Back alignment and function description

>sp\|Q0J7J7\|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2	Back alignment and function description

>sp\|Q8VYD9\|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1	Back alignment and function description

>sp\|Q9FFU1\|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		862
224111046		894	predicted protein [Populus trichocarpa]	0.919	0.887	0.679	0.0
225432918		902	PREDICTED: chloroplastic group IIA intro	0.944	0.902	0.650	0.0
147852748		902	hypothetical protein VITISV_010525 [Viti	0.944	0.902	0.649	0.0
356576487		835	PREDICTED: chloroplastic group IIA intro	0.919	0.949	0.642	0.0
449432614		874	PREDICTED: chloroplastic group IIA intro	0.945	0.932	0.633	0.0
255551945		773	conserved hypothetical protein [Ricinus	0.794	0.886	0.717	0.0
357441009		838	Chloroplastic group IIA intron splicing	0.903	0.929	0.611	0.0
297831030		873	hypothetical protein ARALYDRAFT_898801 [	0.909	0.898	0.595	0.0
30686898		881	CRM family member 3A [Arabidopsis thalia	0.918	0.898	0.585	0.0
9294196		850	unnamed protein product [Arabidopsis tha	0.882	0.895	0.577	0.0

>gi\|224111046\|ref\|XP_002315729.1\| predicted protein [Populus trichocarpa] gi\|222864769\|gb\|EEF01900.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1109 bits (2869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/859 (67%), Positives = 666/859 (77%), Gaps = 66/859 (7%)

Query: 1   MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKN 60
           MALVPSRQ        DSFQSSFSKFHGT   FFR   S PL++   Y    + S  +KN
Sbjct: 1   MALVPSRQLY-----IDSFQSSFSKFHGTPLQFFRYSSSFPLRSHSGY----ACSITDKN 51

Query: 61  PPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDL 120
           P  K+ SF T       DK    NL + SSW   WNKPNK N  + PQA  +YR NN + 
Sbjct: 52  PSTKSTSFPT-------DKSKTLNLSTGSSWFFNWNKPNKQNLPRTPQAVFDYRSNNSNS 104

Query: 121 SALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERV 180
           S  G                  STM KIVEKLKK GY+       DGD +E + + +ERV
Sbjct: 105 SGSG------------------STMEKIVEKLKKHGYM-------DGDVNENKERMQERV 139

Query: 181 IEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLV 240
           IEKGS+EDIFYVEEG+LPNARGGFSKESPLG+ +   SDGEV+FPWEK K+E  EG+W  
Sbjct: 140 IEKGSVEDIFYVEEGMLPNARGGFSKESPLGVEDVFRSDGEVRFPWEKPKKEEDEGKW-T 198

Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL 300
            R  SRTSLAELTLPESELRRLRNLT+ TKSKTR+ G G+TQ VVD IH+KWKTSEI R+
Sbjct: 199 ARSKSRTSLAELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARV 258

Query: 301 KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPA 360
           K+EGAPALNMKRMHEILE KTGGLVIWRSG  VSLYRGVSYE P+++  KRI+K+ E   
Sbjct: 259 KVEGAPALNMKRMHEILENKTGGLVIWRSGATVSLYRGVSYEDPALKWKKRIFKKKE--- 315

Query: 361 SSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHA----TQVNLETASEEQ 416
                            S NSL AA   T    S     N +HA    T++N+E A++ +
Sbjct: 316 ----------------TSSNSLPAATSITIGSQSKNSPDNEIHAPRPKTEINVEAANQ-K 358

Query: 417 ETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVR 476
           ET    +VKYEDEV+KLLDGLGPRYTDWPG DPLPVDADMLPG++PGYQPPFR+LPYGVR
Sbjct: 359 ETKTQTDVKYEDEVDKLLDGLGPRYTDWPGLDPLPVDADMLPGVIPGYQPPFRILPYGVR 418

Query: 477 STLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTS 536
            TL R+++T+L+RLARVLPPHFA+GRSRQLQGLAVAMIKLWEKSSI K+ALKRGVQLTTS
Sbjct: 419 PTLGRQDSTSLRRLARVLPPHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTS 478

Query: 537 ERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR 596
           ERM EDIKKLTGG LLSRNKDFLVFYRGK+FLSP+V+EAL ERERLAKSLQDEEEQARLR
Sbjct: 479 ERMAEDIKKLTGGLLLSRNKDFLVFYRGKDFLSPEVSEALLERERLAKSLQDEEEQARLR 538

Query: 597 ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLE 656
           ASA V+PS E +E+SG AG+L+ETLDA+++WGKRLDD HKE ++REAE+ RHA +V++LE
Sbjct: 539 ASALVIPSDEIMEESGIAGSLEETLDADAKWGKRLDDCHKEKIIREAEIVRHASIVRRLE 598

Query: 657 KKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRR 716
           KKLA A+RKL RAER L+KVE  LKP+ERQADPESITDEERFMFRKLGLRMKAFLLLGRR
Sbjct: 599 KKLAFAQRKLRRAERTLNKVEGFLKPSERQADPESITDEERFMFRKLGLRMKAFLLLGRR 658

Query: 717 GVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMV 776
           GVFDGTVENMHLHWKYRELVKII+K K+F+Q KKIALALEAESGGVLVSVDKISKGYA++
Sbjct: 659 GVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDKISKGYAII 718

Query: 777 VYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNS 836
           VYRGKDYQRPS LRPKNLLTKRKALARSIE+QR EAL  HV+ LE    ++RSEIEQM  
Sbjct: 719 VYRGKDYQRPSMLRPKNLLTKRKALARSIEIQRSEALQNHVSALEIKVEKIRSEIEQMGF 778

Query: 837 VKGTGDEQLYDKLDSAYAT 855
           VK  GDE+LYD+LDSAY T
Sbjct: 779 VKDKGDEELYDRLDSAYLT 797

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225432918\|ref\|XP_002280226.1\| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Vitis vinifera] gi\|297737163\|emb\|CBI26364.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147852748\|emb\|CAN79523.1\| hypothetical protein VITISV_010525 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356576487\|ref\|XP_003556362.1\| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|449432614\|ref\|XP_004134094.1\| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus] gi\|449504099\|ref\|XP_004162252.1\| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255551945\|ref\|XP_002517017.1\| conserved hypothetical protein [Ricinus communis] gi\|223543652\|gb\|EEF45180.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|357441009\|ref\|XP_003590782.1\| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] gi\|355479830\|gb\|AES61033.1\| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297831030\|ref\|XP_002883397.1\| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp. lyrata] gi\|297329237\|gb\|EFH59656.1\| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30686898\|ref\|NP_188947.2\| CRM family member 3A [Arabidopsis thaliana] gi\|332643191\|gb\|AEE76712.1\| CRM family member 3A [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|9294196\|dbj\|BAB02098.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		862
TAIR\|locus:2094558		881	CFM3A "CRM family member 3A" [	0.538	0.526	0.663	6.1e-242
TAIR\|locus:2094997		848	EMB1865 "embryo defective 1865	0.508	0.516	0.470	2.5e-134
TAIR\|locus:2096662		1011	CFM2 "CRM family member 2" [Ar	0.495	0.422	0.448	7.6e-96
TAIR\|locus:2181372		720	CRS1 "ortholog of maize chloro	0.459	0.55	0.429	4.8e-95
TAIR\|locus:2094438		444	LOH1 "LAG One Homologue 1" [Ar	0.178	0.346	0.362	1.7e-21
TAIR\|locus:2123276		343	AT4G13070 [Arabidopsis thalian	0.171	0.431	0.387	1.2e-18
TAIR\|locus:2091458		491	AT3G27550 [Arabidopsis thalian	0.158	0.279	0.342	1.1e-16
TAIR\|locus:2056558		372	AT2G28480 [Arabidopsis thalian	0.150	0.349	0.383	8.3e-16
TAIR\|locus:2126694		405	AT4G31010 [Arabidopsis thalian	0.117	0.249	0.390	2.6e-11
TAIR\|locus:2160195		358	AT5G54890 [Arabidopsis thalian	0.126	0.304	0.350	2.9e-09

TAIR\|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1595 (566.5 bits), Expect = 6.1e-242, Sum P(3) = 6.1e-242
 Identities = 309/466 (66%), Positives = 374/466 (80%)

Query:   398 SYNNVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADML 457
             S   VH  Q+  ET S E++      V+YEDE+++LLD LGPR+ DWPG +PLPVDAD+L
Sbjct:   342 SDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLL 401

Query:   458 PGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLW 517
             PG +P Y+PPFRVLPYGVRS+L  KEAT L+RLAR +PPHFALGRSRQLQGLA AM++LW
Sbjct:   402 PGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLW 461

Query:   518 EKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQ 577
             EKS +AKIA+KRGVQ TTSERM ED+KKLTGG +LSRNKDFLVFYRGKNFLS +V +AL 
Sbjct:   462 EKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALV 521

Query:   578 ERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDS-H 635
             E+ER  ++LQDEEEQARLR +SA ++PS E   K  +AGTL ETLDA  +WGK LDD  H
Sbjct:   522 EQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDH 581

Query:   636 KENLVREAEVRRHAYLVQXXXXXXXXXXXXXXXXXXXXSKVEESLKPAERQADPESITDE 695
              + + +E E+ RH  LV+                    +KVE  LKPAE++ DPESITDE
Sbjct:   582 SDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDE 641

Query:   696 ERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALAL 755
             ERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK KTFD  KK+ALAL
Sbjct:   642 ERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALAL 701

Query:   756 EAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLK 815
             EAESGG+LVS+DK++KGYA++VYRG+DY+RP+ LRPKNLLTKRKALARSIELQR+E LLK
Sbjct:   702 EAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLK 761

Query:   816 HVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSE 861
             H++T+++ A +LR+EIEQM  V   GDE+LY+KLD AYA+ D++++
Sbjct:   762 HISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDMAYASSDEETD 807

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0048316 "seed development" evidence=IGI

TAIR\|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2126694 AT4G31010 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160195 AT5G54890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		862
smart01103		84	smart01103, CRS1_YhbY, Escherichia coli YhbY is as	1e-21
pfam01985		84	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	1e-21
smart01103		84	smart01103, CRS1_YhbY, Escherichia coli YhbY is as	6e-19
pfam01985		84	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	5e-18
smart01103		84	smart01103, CRS1_YhbY, Escherichia coli YhbY is as	9e-13
pfam01985		84	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	2e-11

>gnl\|CDD\|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	Back alignment and domain information

 Score = 89.4 bits (223), Expect = 1e-21
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 692 ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKI 751
           +T +++   R L   +K  + +G+ G+ +G +E +    +  EL+K+ V     +  K+I
Sbjct: 1   LTGKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEI 60

Query: 752 ALALEAESGGVLVSVDKISKGYAMVVYR 779
           A  L  E+G  LV V     G  +V+YR
Sbjct: 61  AEELAEETGAELVQV----IGKTIVLYR 84

GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84

>gnl\|CDD\|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	Back alignment and domain information

>gnl\|CDD\|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	Back alignment and domain information

>gnl\|CDD\|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	Back alignment and domain information

>gnl\|CDD\|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	Back alignment and domain information

>gnl\|CDD\|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		862
KOG1990		564	consensus Poly(A)-specific exoribonuclease PARN [R	100.0
PRK10343		97	RNA-binding protein YhbY; Provisional	99.92
PRK10343		97	RNA-binding protein YhbY; Provisional	99.91
PF01985		84	CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR	99.91
TIGR00253		95	RNA_bind_YhbY putative RNA-binding protein, YhbY f	99.91
TIGR00253		95	RNA_bind_YhbY putative RNA-binding protein, YhbY f	99.91
PF01985		84	CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR	99.9
COG1534		97	Predicted RNA-binding protein containing KH domain	99.89
KOG1990		564	consensus Poly(A)-specific exoribonuclease PARN [R	99.88
COG1534		97	Predicted RNA-binding protein containing KH domain	99.87

>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=3.7e-78  Score=686.91  Aligned_cols=533  Identities=46%  Similarity=0.674  Sum_probs=496.2

Q ss_pred             ccccccccccCCCCHHHHHHHHhhhcCCCCeEEeCCCCcCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHh
Q 002966          242 RRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT  321 (862)
Q Consensus       242 ~~~~~p~~ae~tLt~kErr~LR~lAh~LkpvV~IGK~GlTq~Vv~eI~~awe~~ELVKIKv~g~~~~dmk~~ae~Le~kT  321 (862)
                      +..+ +.+|++++...++.+||..|..+...+  +++|+|+.+++.|+..|+.+|+++++|....+.+|.+++++++..|
T Consensus         3 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~y~k~k~~~~~~~~~q~~~~~~~~~~~~~~~~~~   79 (564)
T KOG1990|consen    3 NFES-LSLAELTVDEADLRRLRLVATGMTSAP--WKAGSTFDTVEAIYLKWKDNEEVYLKFQFGLCLFMKRSHEALEMST   79 (564)
T ss_pred             cccc-hhHHHhhcCHHHHHHHhhhhccceecc--cccccchhhhHHHHHHHHhhhhhheeeccccchhHHHhhhHhhccC
Confidence            3456 999999999999999999999998777  9999999999999999999999999999999999999999999999


Q ss_pred             CC-eEEEEECcEEEEeeCCCCCCchhhhhHHHhhhccCCCCcccchhhhhhhhhhccccCCcccccccccCCCCCCCCcc
Q 002966          322 GG-LVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYN  400 (862)
Q Consensus       322 Gg-eVIqrIG~~iVLYRg~~Y~~P~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (862)
                      || .+||+.|.++..|++..|..|.+..+    ++++           .+                              
T Consensus        80 ~~n~~~~~~g~~~s~~~~~~~~~~~~~~~----~~~~-----------~~------------------------------  114 (564)
T KOG1990|consen   80 GGNFVVWSRGDSISSPEFLCQRSPVDFVA----RQQE-----------NQ------------------------------  114 (564)
T ss_pred             CCceeeeecCccccCCccceeecchhhhh----hhch-----------hh------------------------------
Confidence            99 99999999999998888887765321    1100           00                              


Q ss_pred             ccccchhhhccccchhhhhhhhhhchHHHHHHHhhccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCcccCCCCCCCCCC
Q 002966          401 NVHATQVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLA  480 (862)
Q Consensus       401 ~~~~~~l~~~~~~~~~~~~~l~e~~~e~e~~kLLd~LGPRf~dW~g~~PlPVDADLLP~~VPgyk~PfRllP~gvr~~LT  480 (862)
                                      ...  -..+++++.+.++++|||++.||||.+|+|||+||+|..||+|.+|||.||+|++++||
T Consensus       115 ----------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~l~~~~~~~l~  176 (564)
T KOG1990|consen  115 ----------------AGK--WPSELEKEKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRTLPVGSPPLLT  176 (564)
T ss_pred             ----------------hhh--hHHHHHHHHHHHhhccCcccccCCCCCCccchhhhchhhhhcccChhccCCCCChhhhh
Confidence                            000  01456789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCeeeecccchhhHHHHHHHHHHhhhceeeeeeccCCCcchHHHHHHHH--HhhcCCeEEeecccE
Q 002966          481 RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDI--KKLTGGTLLSRNKDF  558 (862)
Q Consensus       481 deE~t~lRkLar~lp~hfaLGRnr~lqGLa~am~klWEkseIvKIavKrGvqnt~~e~mA~eL--k~LTGGvLLSrnK~~  558 (862)
                      ..|+|++|+||...||||+||+++.+||++.+|+++|++++++||++++|++++.++.||.+|  ..+|||+||++|+++
T Consensus       177 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~lv~hN~~~  256 (564)
T KOG1990|consen  177 SIESTLLRRLGYKLPPHFALGRSRKLQGLAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVLVLHNKLL  256 (564)
T ss_pred             hHHHHHHHHhcccccccceehhccccccchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeEEeeccce
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             EEEEecCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHhhhcccccCcccccccCcccchHHHHhhhhccCCCCChhHH-H
Q 002966          559 LVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHK-E  637 (862)
Q Consensus       559 II~YRGKDFlpp~V~~~L~eReal~rs~q~~EE~aR~~a~~~~~~~~~~~~~~~~aGTl~e~~ea~~~~g~~~~~~~~-~  637 (862)
                      +|+||||+|++ .+..+|.+++++....++.++.+|+.++...       .....++|+.|+..+.++|+.++.-... .
T Consensus       257 dv~y~~~~Fl~-~lp~~l~~f~~~~~~fp~~~~~~~~~~~~~~-------~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~  328 (564)
T KOG1990|consen  257 DVMYRYKNFLS-PLPSTLEEFTDSSSMFPNIEDTKRLAKLSEY-------QKLNLKATLLELARAKAKKEKEIERRSISS  328 (564)
T ss_pred             eeeeehhhccc-ccchhHHHhhhhhhhhhhhHHHHHhhccccc-------cchhhhhhHHHHHHHhcccccCcccccccc
Confidence            99999999999 9999999999998888999999999983211       1256899999999999999999975543 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCHHHHHHHHhhccCCCceEEeCCCC
Q 002966          638 NLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRG  717 (862)
Q Consensus       638 ~~~~e~~~~r~~~~~k~~e~kL~~a~~K~~~ae~~L~Kle~~~~p~~~~~d~e~LT~eER~~LRklahkmKpvV~IGK~G  717 (862)
                      .+..+.....+++..+.+.++++.+.+|+.++++.|++++....|++.+.|++.+|.+++.+++++|.+|++++.+|++|
T Consensus       329 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg  408 (564)
T KOG1990|consen  329 RLKLEFEKASSEKLTEAIFHKLEKAKKKLASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRG  408 (564)
T ss_pred             hhhhhhhccchhhHHHHHHHHHhhhhhhccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcc
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeEEEEEcCCCH-HHHHHHHHHHHHHhCCEEEeccccccCcEEEEEecCCCCCCCCCCCCCccc
Q 002966          718 VFDGTVENMHLHWKYRELVKIIVKVKTF-DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLT  796 (862)
Q Consensus       718 VtdgVIeeIh~hwk~hELVKVkv~~~~~-~d~~eiae~Le~~SGg~lVqV~k~~IG~~iILYRgknY~~P~~l~P~~lLt  796 (862)
                      +++|+|.+||.||++||++||+|+.... .++++.|..++..+|+++|+|+++..|+.|++|||+||++|..|+|.++|+
T Consensus       409 ~f~g~i~n~~l~wk~~e~~k~i~~~~~~~~~~~~~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P~~~l~  488 (564)
T KOG1990|consen  409 VFDGVIENMHLHWKSRELVKVICKEKNLPSQVKQYASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRPRNLLS  488 (564)
T ss_pred             cccceeecchhhhhhcccceeeeccccccHHHHHHHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCchhhhc
Confidence            9999999999999999999999998766 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHh
Q 002966          797 KRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDK  848 (862)
Q Consensus       797 KrkAl~rs~~~qr~~~l~~~i~~l~~~i~~l~~~l~~~~~~~~~~d~~~~~~  848 (862)
                      ||+|+.+++++|+.++++.||..+..++++++.+++.|.....+.|.+.|++
T Consensus       489 ~~k~~~~~~~~~~~~a~~~~i~~~~~~~e~~~~~~~~~~~~~~~~d~~~en~  540 (564)
T KOG1990|consen  489 RRKALERSLEEQRKEALKSHISDLEQEIEQLQASVEAMPAINKKDDLEEENS  540 (564)
T ss_pred             ccCCccccHHHHHHHHHhhhcchhhhhHHHhhcchhcccccccccchHHHhh
Confidence            9999999999999999999999999999999999999999999999999997

>PRK10343 RNA-binding protein YhbY; Provisional	Back alignment and domain information

>PRK10343 RNA-binding protein YhbY; Provisional	Back alignment and domain information

>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain	Back alignment and domain information

>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family	Back alignment and domain information

>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family	Back alignment and domain information

>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain	Back alignment and domain information

>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]	Back alignment and domain information

>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		862
1jo0_A		98	Hypothetical protein HI1333; structural genomics,	3e-12
1jo0_A		98	Hypothetical protein HI1333; structural genomics,	4e-09
1rq8_A		104	Conserved hypothetical protein; structural genomic	8e-12
1rq8_A		104	Conserved hypothetical protein; structural genomic	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98	Back alignment and structure

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 691 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 750
           +++ +++   + L   +   ++LG  G+ +G +  +     + EL+K+ V     +  + 
Sbjct: 2   TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61

Query: 751 IALALEAESGGVLVSVDKISKGYAMVVYR 779
           I  A+  E+    V       G+ +V+YR
Sbjct: 62  IINAIVRETKAAQVQT----IGHILVLYR 86

PyMOL of 1jo0

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98	Back alignment and structure

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104	Back alignment and structure

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 63.3 bits (153), Expect = 3e-10
 Identities = 91/634 (14%), Positives = 189/634 (29%), Gaps = 183/634 (28%)

Query: 282 QAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
           + V D+        EI  + +         R+   L  K                     
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--------------------- 74

Query: 342 EVPSVQLNKRIYKRNELPASSVSQATDK-------QIH---KQISMSGNSLSAAADKTAQ 391
                   + + ++       V +            I    +Q SM         D+   
Sbjct: 75  -------QEEMVQK------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 392 DPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEK--LLDGLGPRYTDWPGC-- 447
           D   F  Y NV          S  Q    +R+   E    K  L+DG+        G   
Sbjct: 122 DNQVFAKY-NV----------SRLQPYLKLRQALLELRPAKNVLIDGVL-------GSGK 163

Query: 448 DPLPVDADMLPGIVPGYQPPFRV--LPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQ 505
             + +D  +   +    +  F++  L     ++        LQ+L   + P++       
Sbjct: 164 TWVALDVCLSYKVQC--KMDFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDH- 219

Query: 506 LQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERM------VED---IKKLTGG--TLL-S 553
                     +  +    +  L+R ++    E        V++             LL +
Sbjct: 220 -------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 554 RNK---DFLVFYRGKNFLSPDVTEALQERER---LAKSL----QDEEEQARLRASAFVLP 603
           R K   DFL      +      +  L   E    L K L    QD   +  L  +   L 
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLS 331

Query: 604 SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKE------NLVREAEVRRHAYLVQKLEK 657
            I        A ++++ L     W     D          N++  AE R+  +       
Sbjct: 332 II--------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-F------D 376

Query: 658 KLARAERKLLRAERAL-SKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRR 716
           +L+     +      + + +   +     ++D   + ++   + +          L+ ++
Sbjct: 377 RLS-----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK---LHKY--------SLVEKQ 420

Query: 717 GVFDGTVENMHLHWKYR-------ELVKIIV----KVKTFDQAKKIALALEAESGGVLVS 765
              + T+    ++ + +        L + IV      KTFD    I   L+         
Sbjct: 421 P-KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--------- 470

Query: 766 VDKISKGY--AMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQ--EALLKHVATLE 821
                  Y  + + +  K+ +            +R  L R + L  +  E  ++H +T  
Sbjct: 471 ------QYFYSHIGHHLKNIEH----------PERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 822 SNAGRLRSEIEQMNSVKG--TGDEQLYDKLDSAY 853
           + +G + + ++Q+   K     ++  Y++L +A 
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 77/581 (13%), Positives = 171/581 (29%), Gaps = 166/581 (28%)

Query: 169 NDER-RGQGKERVIEKGSI---EDIFYVEEGLL---PNAR------GGFSKESPLGLGEE 215
            ++R R     +V  K ++   +    + + LL   P          G  K     +  +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALD 169

Query: 216 VGSDGEV--KFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKT 273
           V    +V  K  ++     +    WL        +L     PE+ L  L+ L +Q     
Sbjct: 170 VCLSYKVQCKMDFK-----IF---WL--------NLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 274 RIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPAL----NMKRMHEILER-----KTGGL 324
             +    +   + I   + +   +++ K      L    N++   +         K   L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNA-KAWNAFNLSCKI--L 269

Query: 325 VIWR-SGTAVSLYRGVSYEVPSVQLNKRIYKRN--ELPASSVSQATDK---QIHK----Q 374
           +  R       L    +  +     +  +       L    +         ++      +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 375 ISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVN--LETASEEQETDFVREVKYED---- 428
           +S+   S+           + +D++ +V+  ++   +E++    E    R++ ++     
Sbjct: 330 LSIIAESIR-------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVF 381

Query: 429 --EV---EKLLDGLGPRYTDWPGCDPLPVDADML------PGIVPGYQPPFRVLPYGVRS 477
                    LL  +      W   D +  D  ++        +V        +    +  
Sbjct: 382 PPSAHIPTILLSLI------W--FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 478 TLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAK-IA--LKRGVQLT 534
            L + +  N   L R +  H+ + ++     L    I  +        I   LK      
Sbjct: 434 EL-KVKLENEYALHRSIVDHYNIPKTFDSDDL----IPPYLDQYFYSHIGHHLKNIEH-- 486

Query: 535 TSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQAR 594
             ERM    + +           FL F     FL                       + +
Sbjct: 487 -PERMTL-FRMV-----------FLDF----RFL-----------------------EQK 506

Query: 595 LRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQK 654
           +R  +              +G++  TL     +   + D+  +    E        LV  
Sbjct: 507 IRHDSTAW---------NASGSILNTLQQLKFYKPYICDNDPKY---ER-------LVNA 547

Query: 655 LEKKLARAERKLLRAE------RALSKVEESL-KPAERQAD 688
           +   L + E  L+ ++       AL   +E++ + A +Q  
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 51.8 bits (123), Expect = 9e-07
 Identities = 93/620 (15%), Positives = 176/620 (28%), Gaps = 196/620 (31%)

Query: 15  IFDSFQSSFSKFHGTHF-HFFRCGHSIPLKNRFF----------YQNFSSNSAHEKN--- 60
           + D  +S  SK       H      ++    R F           Q F        N   
Sbjct: 38  VQDMPKSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-EEVLRINYKF 93

Query: 61  ---PPRKTC---SFSTNNFFSQHDKDDNANLCSSSSWLVKWN--KPNKYNRLKPPQASVN 112
              P +      S  T  +  Q D+     L + +    K+N  +   Y +L+  QA + 
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFAKYNVSRLQPYLKLR--QALLE 146

Query: 113 YRKN-NVDLSALGFARTDSDGNGVGGVDDGGS-----------------------TMGK- 147
            R   NV +            +GV G   G +                        +   
Sbjct: 147 LRPAKNVLI------------DGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 148 -----IVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARG 202
                ++E L+K  Y  D +     D+             K  I  I      LL +   
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSN---------IKLRIHSIQAELRRLLKSKPY 243

Query: 203 GFSKESPLGLGEEVGSDGEVKFPWEK-----------RKEEVAEGRWLVKRRSSRTSLAE 251
              +   L L   V  + +    W             R ++V +   L    ++  SL  
Sbjct: 244 ---ENCLLVL-LNV-QNAKA---WNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDH 293

Query: 252 ----LTLPESE--LRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEK-------W------ 292
               LT  E +  L +  +   Q   +  +         + II E        W      
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATWDNWKHV 350

Query: 293 ---KTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVS------LYRGVSYEV 343
              K + I+   +        ++M +        L ++     +       ++  V    
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFD-------RLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 344 PSV---QLNKR--IYKRNELPASSV---------SQATDKQIHKQISMSGNSLSAAADKT 389
             V   +L+K   + K+ +    S+             +  +H+ I +   ++    D  
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSD 462

Query: 390 AQDPSNFDSY--NNV--HATQVNLETASEEQETDFVREVKYED----EVEKLLDGLGPRY 441
              P   D Y  +++  H     L+     +     R V + D    E +K+      R+
Sbjct: 463 DLIPPYLDQYFYSHIGHH-----LKNIEHPERMTLFRMV-FLDFRFLE-QKI------RH 509

Query: 442 TDWPGCDPLPVDADML------PGIVPGYQPPFRVLP------YGVRSTLARKEATNLQR 489
                     +   +       P I        R++         +   L   + T+L R
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 490 LARVLPPHFAL--GRSRQLQ 507
           +A ++    A+     +Q+Q
Sbjct: 570 IA-LMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		862
1jo0_A		98	Hypothetical protein HI1333; structural genomics,	99.93
1rq8_A		104	Conserved hypothetical protein; structural genomic	99.93
1rq8_A		104	Conserved hypothetical protein; structural genomic	99.93
1jo0_A		98	Hypothetical protein HI1333; structural genomics,	99.93

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A	Back alignment and structure

Probab=99.93  E-value=2.6e-26  Score=209.19  Aligned_cols=89  Identities=22%  Similarity=0.339  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHhhhcCCCCeEEeCCCCcCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECcE
Q 002966          253 TLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA  332 (862)
Q Consensus       253 tLt~kErr~LR~lAh~LkpvV~IGK~GlTq~Vv~eI~~awe~~ELVKIKv~g~~~~dmk~~ae~Le~kTGgeVIqrIG~~  332 (862)
                      +||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|++++..+++++|++|+++|||++||+||++
T Consensus         2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~   81 (98)
T 1jo0_A            2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI   81 (98)
T ss_dssp             CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred             CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCC
Q 002966          333 VSLYRGVSY  341 (862)
Q Consensus       333 iVLYRg~~Y  341 (862)
                      +||||++.-
T Consensus        82 ~vLyR~~~~   90 (98)
T 1jo0_A           82 LVLYRPSEE   90 (98)
T ss_dssp             EEEECCCSS
T ss_pred             EEEEccCCC
Confidence            999999844

PyMOL of 1jo0

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1	Back alignment and structure

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1	Back alignment and structure

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		862
d1jo0a_		97	d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i	2e-21
d1jo0a_		97	d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i	1e-15
d1jo0a_		97	d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i	2e-12
d1rq8a_		96	d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy	4e-21
d1rq8a_		96	d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy	9e-17
d1rq8a_		96	d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy	8e-12

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: YhbY homologue HI1333
species: Haemophilus influenzae [TaxId: 727]

 Score = 87.4 bits (217), Expect = 2e-21
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 691 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKK 750
           +++ +++   + L   +   ++LG  G+ +G +  +     + EL+K+ V     +  + 
Sbjct: 2   TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQL 61

Query: 751 IALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 792
           I  A+  E+    V       G+ +V+YR  +        P+
Sbjct: 62  IINAIVRETKAAQVQT----IGHILVLYRPSE--EAKIQLPR 97

PyMOL of d1jo0a_

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97	Back information, alignment and structure

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97	Back information, alignment and structure

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96	Back information, alignment and structure

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96	Back information, alignment and structure

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		862
d1jo0a_		97	YhbY homologue HI1333 {Haemophilus influenzae [Tax	99.93
d1jo0a_		97	YhbY homologue HI1333 {Haemophilus influenzae [Tax	99.93
d1rq8a_		96	Hypothetical protein SAV1595 {Staphylococcus aureu	99.93
d1rq8a_		96	Hypothetical protein SAV1595 {Staphylococcus aureu	99.92

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: YhbY homologue HI1333
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=5.6e-26  Score=204.11  Aligned_cols=89  Identities=22%  Similarity=0.344  Sum_probs=87.0

Q ss_pred             CCCCHHHHHHHHhhhcCCCCeEEeCCCCcCHHHHHHHHHHHHhCCeEEEEecCCChhhHHHHHHHHHHHhCCeEEEEECc
Q 002966          252 LTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGT  331 (862)
Q Consensus       252 ~tLt~kErr~LR~lAh~LkpvV~IGK~GlTq~Vv~eI~~awe~~ELVKIKv~g~~~~dmk~~ae~Le~kTGgeVIqrIG~  331 (862)
                      .+||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++..++++++++|+++|||.|||+||+
T Consensus         1 ttLt~kqr~~LR~~ah~lkp~v~IGk~Glt~~vi~ei~~al~~~ELIKvki~~~~~~~~~~~~~~l~~~t~~~vV~~iG~   80 (97)
T d1jo0a_           1 TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGH   80 (97)
T ss_dssp             CCCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETT
T ss_pred             CCCCHHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHHHHhCCeEEEEEcCCCHHHHHHHHHHHHHHhCCEEEEEECC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCC
Q 002966          332 AVSLYRGVS  340 (862)
Q Consensus       332 ~iVLYRg~~  340 (862)
                      ++||||+++
T Consensus        81 ~~ilYR~~~   89 (97)
T d1jo0a_          81 ILVLYRPSE   89 (97)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEEcCCC
Confidence            999999975

PyMOL of d1jo0a_

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}	Back information, alignment and structure

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}	Back information, alignment and structure