Citrus Sinensis ID: 002995
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 860 | 2.2.26 [Sep-21-2011] | |||||||
| P0CB22 | 1083 | Histone-lysine N-methyltr | yes | no | 0.981 | 0.779 | 0.697 | 0.0 | |
| Q9C5X4 | 1062 | Histone-lysine N-methyltr | no | no | 0.967 | 0.783 | 0.663 | 0.0 | |
| Q8GZ42 | 1043 | Histone-lysine N-methyltr | no | no | 0.515 | 0.424 | 0.338 | 1e-66 | |
| Q9SUE7 | 1027 | Histone-lysine N-methyltr | no | no | 0.490 | 0.410 | 0.336 | 1e-64 | |
| Q9M364 | 1018 | Histone-lysine N-methyltr | no | no | 0.489 | 0.413 | 0.319 | 3e-62 | |
| Q24742 | 3828 | Histone-lysine N-methyltr | N/A | no | 0.224 | 0.050 | 0.430 | 1e-41 | |
| P20659 | 3726 | Histone-lysine N-methyltr | yes | no | 0.224 | 0.051 | 0.426 | 9e-41 | |
| Q03164 | 3969 | Histone-lysine N-methyltr | yes | no | 0.179 | 0.038 | 0.5 | 4e-38 | |
| P55200 | 3966 | Histone-lysine N-methyltr | yes | no | 0.179 | 0.038 | 0.5 | 5e-38 | |
| O08550 | 2713 | Histone-lysine N-methyltr | no | no | 0.236 | 0.074 | 0.390 | 5e-37 |
| >sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1214 bits (3140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/856 (69%), Positives = 683/856 (79%), Gaps = 12/856 (1%)
Query: 4 WYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDG 63
WY G +VGY+ E+ H VKY DGD E+L L E+IKF IS+++M+ L + F N+V DG
Sbjct: 235 WYPGSIVGYNVETKHHIVKYGDGDGEELALRREKIKFLISRDDMELLNMKFGTNDVVVDG 294
Query: 64 YDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLN-KISGGRS 122
DYDE+V+LAAS ++CQ+ EP DIIWAKLTGHAMWPAI+VDES+I KGLN KISGGRS
Sbjct: 295 QDYDELVILAASFEECQDFEPRDIIWAKLTGHAMWPAIIVDESVIVKRKGLNNKISGGRS 354
Query: 123 IPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRML 182
+ VQFFGTHDFARI VKQ +SFLKGLLS LKCK+PRF +++EEAK+YL E KLP RM
Sbjct: 355 VLVQFFGTHDFARIQVKQAVSFLKGLLSRSPLKCKQPRFEEAMEEAKMYLKEYKLPGRMD 414
Query: 183 QLQNAIRADDGENSWSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIV 242
QLQ D E S +E S SG++ KD + +G + GDLQI++LG+IV
Sbjct: 415 QLQKVADTDCSERINSGEEDSSNSGDDYTKDGEVWLRPTELGDCLHRIGDLQIINLGRIV 474
Query: 243 KDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQ 302
DSE+F+D + WPEGYTA RKF SL DP YKMEVLRD ESK RP+FRVT ++GEQ
Sbjct: 475 TDSEFFKDSKHTWPEGYTATRKFISLKDPNASAMYKMEVLRDAESKTRPVFRVTTNSGEQ 534
Query: 303 FTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLT 362
F G TPS CW+KI +I++ Q SD+ G E + ESG+DMFGFSNPEV KLI GL
Sbjct: 535 FKGDTPSACWNKIYNRIKKIQI-ASDNPDVLG--EGLHESGTDMFGFSNPEVDKLIQGLL 591
Query: 363 KSRPTSKSSLCKLTS-KYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRM 421
+SRP SK S K +S KY+D P GYRPVRV+WKDLDKC+VCHMDEEY+NNLFLQCDKCRM
Sbjct: 592 QSRPPSKVSQRKYSSGKYQDHPTGYRPVRVEWKDLDKCNVCHMDEEYENNLFLQCDKCRM 651
Query: 422 MVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIW 481
MVH RCYG+LEP NG+LWLCNLCRP A + PP CCLCPVVGGAMKPTTDGRWAHLACAIW
Sbjct: 652 MVHTRCYGQLEPHNGILWLCNLCRPVALDIPPRCCLCPVVGGAMKPTTDGRWAHLACAIW 711
Query: 482 IPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAA 541
IPETCL DVK+MEPIDG+ +VSKDRWKLLCSICGVSYGACIQCSN TCRVAYHPLCARAA
Sbjct: 712 IPETCLLDVKKMEPIDGVKKVSKDRWKLLCSICGVSYGACIQCSNNTCRVAYHPLCARAA 771
Query: 542 GLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYI 601
GLCVEL DEDRL LLS+D+D+ DQCIRLLSFCK+H+Q N L E +++ +Y+
Sbjct: 772 GLCVELADEDRLFLLSMDDDEADQCIRLLSFCKRHRQTSNYHLET-EYMIKPAHNIAEYL 830
Query: 602 PPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPS 661
PP NPSGCAR+EPYNY GRRGRKEPEALA AS KRLFVENQPY+VGGY ++ S
Sbjct: 831 PPPNPSGCARTEPYNYLGRRGRKEPEALAGASSKRLFVENQPYIVGGYSRHEFSTYE--- 887
Query: 662 IRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDM 721
R+ GSK S N LSMA+KY MKET+RKRLAFGKSGIHGFGIFAK PHRAGDM
Sbjct: 888 -RIYGSKMSQIT--TPSNILSMAEKYTFMKETYRKRLAFGKSGIHGFGIFAKLPHRAGDM 944
Query: 722 VIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPN 781
VIEYTGELVRP IAD+REH IYNS+VGAGTYMFRID+ERVIDATR GSIAHLINHSCEPN
Sbjct: 945 VIEYTGELVRPPIADKREHLIYNSMVGAGTYMFRIDNERVIDATRTGSIAHLINHSCEPN 1004
Query: 782 CYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAE 841
CYSRVISVNGDEHIIIFAKRD+ +WEELTYDYRFFSIDE+LACYCGFPRCRGVVNDTEAE
Sbjct: 1005 CYSRVISVNGDEHIIIFAKRDVAKWEELTYDYRFFSIDERLACYCGFPRCRGVVNDTEAE 1064
Query: 842 EQVAKLYAPRSELIDW 857
E+ A ++A R EL +W
Sbjct: 1065 ERQANIHASRCELKEW 1080
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Histone methyltransferase. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3 |
| >sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana GN=ATX5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SUE7|ATX4_ARATH Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana GN=ATX4 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana GN=ATX3 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q24742|TRX_DROVI Histone-lysine N-methyltransferase trithorax OS=Drosophila virilis GN=trx PE=3 SV=1 | Back alignment and function description |
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| >sp|P20659|TRX_DROME Histone-lysine N-methyltransferase trithorax OS=Drosophila melanogaster GN=trx PE=1 SV=4 | Back alignment and function description |
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| >sp|Q03164|MLL1_HUMAN Histone-lysine N-methyltransferase MLL OS=Homo sapiens GN=MLL PE=1 SV=5 | Back alignment and function description |
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| >sp|P55200|MLL1_MOUSE Histone-lysine N-methyltransferase MLL OS=Mus musculus GN=Mll PE=1 SV=3 | Back alignment and function description |
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| >sp|O08550|MLL4_MOUSE Histone-lysine N-methyltransferase MLL4 OS=Mus musculus GN=Wbp7 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 860 | ||||||
| 255573673 | 1103 | phd finger protein, putative [Ricinus co | 0.996 | 0.776 | 0.804 | 0.0 | |
| 224065044 | 1014 | SET domain protein [Populus trichocarpa] | 0.979 | 0.830 | 0.775 | 0.0 | |
| 225433774 | 1084 | PREDICTED: histone-lysine N-methyltransf | 0.997 | 0.791 | 0.743 | 0.0 | |
| 224128834 | 1050 | SET domain protein [Populus trichocarpa] | 0.953 | 0.780 | 0.747 | 0.0 | |
| 297745169 | 1068 | unnamed protein product [Vitis vinifera] | 0.979 | 0.788 | 0.736 | 0.0 | |
| 449441169 | 1036 | PREDICTED: histone-lysine N-methyltransf | 0.994 | 0.825 | 0.740 | 0.0 | |
| 449496792 | 1095 | PREDICTED: LOW QUALITY PROTEIN: histone- | 0.994 | 0.780 | 0.736 | 0.0 | |
| 342209882 | 1089 | trithorax-like protein [Phaseolus vulgar | 0.988 | 0.780 | 0.727 | 0.0 | |
| 356568903 | 1088 | PREDICTED: histone-lysine N-methyltransf | 0.987 | 0.780 | 0.723 | 0.0 | |
| 356526623 | 1088 | PREDICTED: histone-lysine N-methyltransf | 0.988 | 0.781 | 0.715 | 0.0 |
| >gi|255573673|ref|XP_002527758.1| phd finger protein, putative [Ricinus communis] gi|223532845|gb|EEF34619.1| phd finger protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1437 bits (3721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/866 (80%), Positives = 772/866 (89%), Gaps = 9/866 (1%)
Query: 3 DWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDND 62
DWYSG VVGY SE+ RHHV+Y DGD+EDL++SNE+IKFYIS+EEM+ L L+FSI + D D
Sbjct: 239 DWYSGCVVGYTSETKRHHVEYQDGDKEDLVISNEKIKFYISREEMEQLNLTFSIKSADGD 298
Query: 63 GYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRS 122
YDYDEMV LAA LDDCQ+LEPGDIIWAKLTGHAMWPAIVVD+SLIG+ KGLNKISG RS
Sbjct: 299 CYDYDEMVALAAVLDDCQDLEPGDIIWAKLTGHAMWPAIVVDQSLIGERKGLNKISGERS 358
Query: 123 IPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRML 182
+ VQFFGTHDFARI KQVISFLKGLLSSFHLKC+KP FT+SLEEAK+YLSEQKLPRRML
Sbjct: 359 VFVQFFGTHDFARIKPKQVISFLKGLLSSFHLKCRKPHFTRSLEEAKMYLSEQKLPRRML 418
Query: 183 QLQNAIRADDGENSWSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIV 242
QLQN++ AD +++ S+DEGS S E+C +ER+Q L + SPYV GDLQI+SLGKIV
Sbjct: 419 QLQNSMNADSCKSASSEDEGSSDSSEDCIDNERIQRILRGLETSPYVIGDLQIISLGKIV 478
Query: 243 KDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQ 302
KDSEYFQ+DRFIWPEGYTA+RKFTS+ DP C YKMEVLRD ESKIRPLFRVTLDNGEQ
Sbjct: 479 KDSEYFQNDRFIWPEGYTALRKFTSVTDPSACTIYKMEVLRDAESKIRPLFRVTLDNGEQ 538
Query: 303 FTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLT 362
GSTP CW KI +IR+ Q + SD FSAEG E+ +SGSDMFGFSNPEVMKLI GL+
Sbjct: 539 IRGSTPCACWDKIYRRIRKLQYSASDGFSAEGVVERFYKSGSDMFGFSNPEVMKLIKGLS 598
Query: 363 KSRPTSKSSLCKLTS-KYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRM 421
KSR SK S+CKLTS +Y+DLP GYRPVRVDWKDLDKC+VCHMDEEY+NNLFLQCDKCRM
Sbjct: 599 KSRLYSKMSICKLTSERYQDLPVGYRPVRVDWKDLDKCNVCHMDEEYENNLFLQCDKCRM 658
Query: 422 MVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIW 481
MVHARCYGELEPV+GVLW CNLCRPGAP+ PPCCLCPV+GGAMKPTTDGRWAHLACAIW
Sbjct: 659 MVHARCYGELEPVDGVLWYCNLCRPGAPD-SPPCCLCPVIGGAMKPTTDGRWAHLACAIW 717
Query: 482 IPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAA 541
IPETCL+D+KRMEPIDGLNR++KDRWKLLCSICGV+YGACIQCSN TCRVAYHPLCARAA
Sbjct: 718 IPETCLSDIKRMEPIDGLNRINKDRWKLLCSICGVAYGACIQCSNNTCRVAYHPLCARAA 777
Query: 542 GLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYI 601
GLCVELEDE+RL+LLS+D+D EDQCIRLLSFCK+HKQP N+R +ER+ ++T R DYI
Sbjct: 778 GLCVELEDEERLHLLSVDDDVEDQCIRLLSFCKRHKQPSNERPVTEERIGRITHRYSDYI 837
Query: 602 PPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPS 661
PP NPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQ+ SG TLPS
Sbjct: 838 PPCNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHESSGITLPS 897
Query: 662 IRVIGSKFSFSL------HRDAP-NFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKH 714
V GS+FS +L DAP N +SMA+KY++M++TFRKRLAFGKSGIHGFGIFAKH
Sbjct: 898 NGVEGSRFSSNLQWLKTSQLDAPNNIISMAEKYEYMRQTFRKRLAFGKSGIHGFGIFAKH 957
Query: 715 PHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLI 774
PHRAGDMVIEYTGELVRP IADRREHFIYNSLVGAGTYMFRI+DERVIDATRAGSIAHLI
Sbjct: 958 PHRAGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRINDERVIDATRAGSIAHLI 1017
Query: 775 NHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGV 834
NHSCEPNCYSRVISVNGDEHIIIFAKRDIK+WEELTYDYRFFSIDEQLACYCGFPRCRGV
Sbjct: 1018 NHSCEPNCYSRVISVNGDEHIIIFAKRDIKRWEELTYDYRFFSIDEQLACYCGFPRCRGV 1077
Query: 835 VNDTEAEEQVAKLYAPRSELIDWRGD 860
VND EAEEQVAKLYAPR+ELID++G+
Sbjct: 1078 VNDIEAEEQVAKLYAPRNELIDFKGE 1103
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065044|ref|XP_002301643.1| SET domain protein [Populus trichocarpa] gi|222843369|gb|EEE80916.1| SET domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225433774|ref|XP_002268621.1| PREDICTED: histone-lysine N-methyltransferase ATX2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224128834|ref|XP_002320433.1| SET domain protein [Populus trichocarpa] gi|222861206|gb|EEE98748.1| SET domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297745169|emb|CBI39161.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449441169|ref|XP_004138356.1| PREDICTED: histone-lysine N-methyltransferase ATX2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449496792|ref|XP_004160228.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|342209882|gb|AEL16988.1| trithorax-like protein [Phaseolus vulgaris] | Back alignment and taxonomy information |
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| >gi|356568903|ref|XP_003552647.1| PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356526623|ref|XP_003531916.1| PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 860 | ||||||
| TAIR|locus:2198743 | 1083 | ATX2 "trithorax-like protein 2 | 0.980 | 0.778 | 0.663 | 1.6e-306 | |
| TAIR|locus:2065923 | 1062 | ATX1 "homologue of trithorax" | 0.973 | 0.788 | 0.641 | 4.2e-301 | |
| TAIR|locus:2178446 | 1043 | SDG29 "AT5G53430" [Arabidopsis | 0.494 | 0.407 | 0.317 | 3.3e-59 | |
| TAIR|locus:2132912 | 1027 | SDG16 "SET domain protein 16" | 0.486 | 0.407 | 0.317 | 9.9e-59 | |
| TAIR|locus:2076755 | 1018 | SDG14 "SET domain protein 14" | 0.229 | 0.193 | 0.419 | 1.8e-56 | |
| UNIPROTKB|I3L895 | 323 | MLL "Uncharacterized protein" | 0.179 | 0.476 | 0.5 | 5.2e-42 | |
| ZFIN|ZDB-GENE-060503-376 | 2863 | mll4a "myeloid/lymphoid or mix | 0.189 | 0.056 | 0.485 | 6.3e-42 | |
| UNIPROTKB|J9NZ02 | 2194 | RBM42 "Uncharacterized protein | 0.179 | 0.070 | 0.506 | 5e-40 | |
| UNIPROTKB|F1NET5 | 3958 | MLL "Uncharacterized protein" | 0.179 | 0.038 | 0.5 | 8.1e-40 | |
| ZFIN|ZDB-GENE-080521-1 | 3772 | mll4b "myeloid/lymphoid or mix | 0.179 | 0.040 | 0.506 | 1.2e-39 |
| TAIR|locus:2198743 ATX2 "trithorax-like protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2941 (1040.3 bits), Expect = 1.6e-306, P = 1.6e-306
Identities = 569/857 (66%), Positives = 650/857 (75%)
Query: 4 WYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDG 63
WY G +VGY+ E+ H VKY DGD E+L L E+IKF IS+++M+ L + F N+V DG
Sbjct: 235 WYPGSIVGYNVETKHHIVKYGDGDGEELALRREKIKFLISRDDMELLNMKFGTNDVVVDG 294
Query: 64 YDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLN-KISGGRS 122
DYDE+V+LAAS ++CQ+ EP DIIWAKLTGHAMWPAI+VDES+I KGLN KISGGRS
Sbjct: 295 QDYDELVILAASFEECQDFEPRDIIWAKLTGHAMWPAIIVDESVIVKRKGLNNKISGGRS 354
Query: 123 IPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRML 182
+ VQFFGTHDFARI VKQ +SFLKGLLS LKCK+PRF +++EEAK+YL E KLP RM
Sbjct: 355 VLVQFFGTHDFARIQVKQAVSFLKGLLSRSPLKCKQPRFEEAMEEAKMYLKEYKLPGRMD 414
Query: 183 QLQNAIRADDGENSWSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIV 242
QLQ D E S +E S SG++ KD + +G + GDLQI++LG+IV
Sbjct: 415 QLQKVADTDCSERINSGEEDSSNSGDDYTKDGEVWLRPTELGDCLHRIGDLQIINLGRIV 474
Query: 243 KDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQ 302
DSE+F+D + WPEGYTA RKF SL DP YKMEVLRD ESK RP+FRVT ++GEQ
Sbjct: 475 TDSEFFKDSKHTWPEGYTATRKFISLKDPNASAMYKMEVLRDAESKTRPVFRVTTNSGEQ 534
Query: 303 FTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLT 362
F G TPS CW+KI +I++ Q SD+ G E + ESG+DMFGFSNPEV KLI GL
Sbjct: 535 FKGDTPSACWNKIYNRIKKIQI-ASDNPDVLG--EGLHESGTDMFGFSNPEVDKLIQGLL 591
Query: 363 KSRP-XXXXXXXXXXXXYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRM 421
+SRP Y+D P GYRPVRV+WKDLDKC+VCHMDEEY+NNLFLQCDKCRM
Sbjct: 592 QSRPPSKVSQRKYSSGKYQDHPTGYRPVRVEWKDLDKCNVCHMDEEYENNLFLQCDKCRM 651
Query: 422 MVHARCYGELEPVNGVLWLCNLXXXXXXXXXXXXXXXXVVGGAMKPTTDGRWAHLACAIW 481
MVH RCYG+LEP NG+LWLCNL VVGGAMKPTTDGRWAHLACAIW
Sbjct: 652 MVHTRCYGQLEPHNGILWLCNLCRPVALDIPPRCCLCPVVGGAMKPTTDGRWAHLACAIW 711
Query: 482 IPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAA 541
IPETCL DVK+MEPIDG+ +VSKDRWKLLCSICGVSYGACIQCSN TCRVAYHPLCARAA
Sbjct: 712 IPETCLLDVKKMEPIDGVKKVSKDRWKLLCSICGVSYGACIQCSNNTCRVAYHPLCARAA 771
Query: 542 GLCVXXXXXXXXXXXXXXXXXXXQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYI 601
GLCV QCIRLLSFCK+H+Q N L E +++ +Y+
Sbjct: 772 GLCVELADEDRLFLLSMDDDEADQCIRLLSFCKRHRQTSNYHLET-EYMIKPAHNIAEYL 830
Query: 602 PPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPS 661
PP NPSGCAR+EPYNY GRRGRKEPEALA AS KRLFVENQPY+VGGY ++ S T
Sbjct: 831 PPPNPSGCARTEPYNYLGRRGRKEPEALAGASSKRLFVENQPYIVGGYSRHEFS--TYE- 887
Query: 662 IRVIGSKFSFSLHRDAP-NFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGD 720
R+ GSK S P N LSMA+KY MKET+RKRLAFGKSGIHGFGIFAK PHRAGD
Sbjct: 888 -RIYGSKMS---QITTPSNILSMAEKYTFMKETYRKRLAFGKSGIHGFGIFAKLPHRAGD 943
Query: 721 MVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEP 780
MVIEYTGELVRP IAD+REH IYNS+VGAGTYMFRID+ERVIDATR GSIAHLINHSCEP
Sbjct: 944 MVIEYTGELVRPPIADKREHLIYNSMVGAGTYMFRIDNERVIDATRTGSIAHLINHSCEP 1003
Query: 781 NCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEA 840
NCYSRVISVNGDEHIIIFAKRD+ +WEELTYDYRFFSIDE+LACYCGFPRCRGVVNDTEA
Sbjct: 1004 NCYSRVISVNGDEHIIIFAKRDVAKWEELTYDYRFFSIDERLACYCGFPRCRGVVNDTEA 1063
Query: 841 EEQVAKLYAPRSELIDW 857
EE+ A ++A R EL +W
Sbjct: 1064 EERQANIHASRCELKEW 1080
|
|
| TAIR|locus:2065923 ATX1 "homologue of trithorax" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178446 SDG29 "AT5G53430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2132912 SDG16 "SET domain protein 16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076755 SDG14 "SET domain protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3L895 MLL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-060503-376 mll4a "myeloid/lymphoid or mixed-lineage leukemia 4a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9NZ02 RBM42 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NET5 MLL "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-080521-1 mll4b "myeloid/lymphoid or mixed-lineage leukemia 4b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0CB22 | ATX2_ARATH | 2, ., 1, ., 1, ., 4, 3 | 0.6974 | 0.9813 | 0.7793 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1.43 | 0.946 |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 860 | |||
| pfam13832 | 109 | pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma | 5e-44 | |
| COG5141 | 669 | COG5141, COG5141, PHD zinc finger-containing prote | 4e-36 | |
| smart00317 | 124 | smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest | 9e-36 | |
| pfam00856 | 113 | pfam00856, SET, SET domain | 2e-32 | |
| pfam13771 | 89 | pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai | 3e-25 | |
| COG2940 | 480 | COG2940, COG2940, Proteins containing SET domain [ | 5e-25 | |
| pfam05964 | 54 | pfam05964, FYRN, F/Y-rich N-terminus | 5e-13 | |
| cd05162 | 87 | cd05162, PWWP, The PWWP domain, named for a conser | 7e-13 | |
| cd05838 | 95 | cd05838, WHSC1_related, The PWWP domain was first | 9e-12 | |
| pfam05965 | 84 | pfam05965, FYRC, F/Y rich C-terminus | 4e-11 | |
| smart00542 | 86 | smart00542, FYRC, FY-rich domain, C-terminal regio | 2e-10 | |
| smart00293 | 63 | smart00293, PWWP, domain with conserved PWWP motif | 4e-10 | |
| pfam00855 | 74 | pfam00855, PWWP, PWWP domain | 2e-08 | |
| cd05834 | 83 | cd05834, HDGF_related, The PWWP domain is an essen | 2e-08 | |
| pfam13831 | 33 | pfam13831, PHD_2, PHD-finger | 3e-07 | |
| cd05837 | 110 | cd05837, MSH6_like, The PWWP domain is present in | 8e-07 | |
| cd05840 | 93 | cd05840, SPBC215_ISWI_like, The PWWP domain is a c | 8e-07 | |
| cd05836 | 86 | cd05836, N_Pac_NP60, The PWWP domain is an essenti | 2e-06 | |
| smart00541 | 44 | smart00541, FYRN, FY-rich domain, N-terminal regio | 6e-05 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 2e-04 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 7e-04 | |
| cd05835 | 87 | cd05835, Dnmt3b_related, The PWWP domain is an ess | 0.001 |
| >gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 5e-44
Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 15/124 (12%)
Query: 453 PPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCS 512
CCLCP+ GGA+K TTDGRW H+ CAI++PE + MEPID ++R+ K+RWKL C
Sbjct: 1 AECCLCPLRGGALKKTTDGRWVHVLCAIFVPEVRFGNGATMEPID-VSRIPKERWKLKCC 59
Query: 513 ICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSF 572
C GACIQCS C+ ++H CARAAG+ +E+ED L ++++
Sbjct: 60 FCKKRSGACIQCSYGRCQTSFHVTCARAAGVYMEIEDWPNLQ--------------VIAY 105
Query: 573 CKKH 576
C+KH
Sbjct: 106 CQKH 109
|
Length = 109 |
| >gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >gnl|CDD|216155 pfam00856, SET, SET domain | Back alignment and domain information |
|---|
| >gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|218830 pfam05964, FYRN, F/Y-rich N-terminus | Back alignment and domain information |
|---|
| >gnl|CDD|99894 cd05162, PWWP, The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids | Back alignment and domain information |
|---|
| >gnl|CDD|99899 cd05838, WHSC1_related, The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) | Back alignment and domain information |
|---|
| >gnl|CDD|218831 pfam05965, FYRC, F/Y rich C-terminus | Back alignment and domain information |
|---|
| >gnl|CDD|197781 smart00542, FYRC, FY-rich domain, C-terminal region | Back alignment and domain information |
|---|
| >gnl|CDD|214603 smart00293, PWWP, domain with conserved PWWP motif | Back alignment and domain information |
|---|
| >gnl|CDD|216154 pfam00855, PWWP, PWWP domain | Back alignment and domain information |
|---|
| >gnl|CDD|99895 cd05834, HDGF_related, The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF | Back alignment and domain information |
|---|
| >gnl|CDD|222406 pfam13831, PHD_2, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|99898 cd05837, MSH6_like, The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS | Back alignment and domain information |
|---|
| >gnl|CDD|99901 cd05840, SPBC215_ISWI_like, The PWWP domain is a component of the S | Back alignment and domain information |
|---|
| >gnl|CDD|99897 cd05836, N_Pac_NP60, The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha | Back alignment and domain information |
|---|
| >gnl|CDD|128814 smart00541, FYRN, FY-rich domain, N-terminal region | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|99896 cd05835, Dnmt3b_related, The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 860 | |||
| KOG1080 | 1005 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 100.0 | |
| KOG4442 | 729 | consensus Clathrin coat binding protein/Huntingtin | 100.0 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 100.0 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 100.0 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 100.0 | |
| KOG1079 | 739 | consensus Transcriptional repressor EZH1 [Transcri | 99.97 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 99.96 | |
| PF13832 | 110 | zf-HC5HC2H_2: PHD-zinc-finger like domain | 99.91 | |
| cd05834 | 83 | HDGF_related The PWWP domain is an essential part | 99.89 | |
| cd05836 | 86 | N_Pac_NP60 The PWWP domain is an essential part of | 99.89 | |
| KOG1082 | 364 | consensus Histone H3 (Lys9) methyltransferase SUV3 | 99.89 | |
| cd05838 | 95 | WHSC1_related The PWWP domain was first identified | 99.87 | |
| cd05840 | 93 | SPBC215_ISWI_like The PWWP domain is a component o | 99.87 | |
| smart00317 | 116 | SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) | 99.87 | |
| cd05835 | 87 | Dnmt3b_related The PWWP domain is an essential com | 99.86 | |
| cd05162 | 87 | PWWP The PWWP domain, named for a conserved Pro-Tr | 99.86 | |
| cd05841 | 83 | BS69_related The PWWP domain is part of BS69 prote | 99.85 | |
| KOG1083 | 1306 | consensus Putative transcription factor ASH1/LIN-5 | 99.84 | |
| PF00855 | 86 | PWWP: PWWP domain; InterPro: IPR000313 Upon charac | 99.83 | |
| smart00293 | 63 | PWWP domain with conserved PWWP motif. conservatio | 99.81 | |
| KOG1085 | 392 | consensus Predicted methyltransferase (contains a | 99.8 | |
| cd05837 | 110 | MSH6_like The PWWP domain is present in MSH6, a mi | 99.78 | |
| cd06080 | 80 | MUM1_like Mutated melanoma-associated antigen 1 (M | 99.7 | |
| cd05839 | 111 | BR140_related The PWWP domain is found in the BR14 | 99.69 | |
| PF05964 | 54 | FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The | 99.67 | |
| PF13771 | 90 | zf-HC5HC2H: PHD-like zinc-binding domain | 99.62 | |
| COG2940 | 480 | Proteins containing SET domain [General function p | 99.6 | |
| PF05965 | 86 | FYRC: F/Y rich C-terminus; InterPro: IPR003889 The | 99.6 | |
| smart00542 | 86 | FYRC "FY-rich" domain, C-terminal region. is somet | 99.6 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 99.57 | |
| KOG1904 | 496 | consensus Transcription coactivator [Transcription | 99.45 | |
| PF00856 | 162 | SET: SET domain; InterPro: IPR001214 The SET domai | 99.42 | |
| smart00541 | 44 | FYRN "FY-rich" domain, N-terminal region. is somet | 99.31 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 99.07 | |
| KOG1081 | 463 | consensus Transcription factor NSD1 and related SE | 98.82 | |
| KOG2589 | 453 | consensus Histone tail methylase [Chromatin struct | 98.78 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 97.6 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 97.56 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 97.49 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 97.47 | |
| KOG2461 | 396 | consensus Transcription factor BLIMP-1/PRDI-BF1, c | 97.37 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 97.09 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 96.95 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 96.81 | |
| KOG1081 | 463 | consensus Transcription factor NSD1 and related SE | 96.78 | |
| KOG1084 | 375 | consensus Transcription factor TCF20 [Transcriptio | 96.5 | |
| smart00508 | 26 | PostSET Cysteine-rich motif following a subset of | 96.02 | |
| PF15057 | 124 | DUF4537: Domain of unknown function (DUF4537) | 95.63 | |
| PF15446 | 175 | zf-PHD-like: PHD/FYVE-zinc-finger like domain | 95.41 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 95.11 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 93.79 | |
| PF08169 | 96 | RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR01260 | 92.32 | |
| KOG1141 | 1262 | consensus Predicted histone methyl transferase [Ch | 91.95 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 91.66 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 91.47 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 91.09 | |
| PF11717 | 55 | Tudor-knot: RNA binding activity-knot of a chromod | 90.85 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 90.48 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 89.94 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 89.34 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 88.4 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 87.68 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 85.02 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 84.63 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 84.07 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 84.06 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 83.76 | |
| PF07649 | 30 | C1_3: C1-like domain; InterPro: IPR011424 This sho | 82.97 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 81.43 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 81.16 | |
| PF00130 | 53 | C1_1: Phorbol esters/diacylglycerol binding domain | 80.17 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 80.01 |
| >KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=599.30 Aligned_cols=506 Identities=35% Similarity=0.617 Sum_probs=377.4
Q ss_pred CceecCCchHHHHHHHHHHHhhccCCCCCcccccccccccccCccccCCCcHHHHHHHhhcCCCCCCCchhhhhhcc-cc
Q 002995 301 EQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPTSKSSLCKLTS-KY 379 (860)
Q Consensus 301 ~~~~~~s~~~~W~~i~~~i~~~~~~~~~~~~~~~~~~~~~~sG~~~FGls~p~v~~li~~Lp~a~~c~k~~~~k~~s-~~ 379 (860)
..+-..+++.+|....+...+.+......... ...+..++..+|++..+.....+.........+....++-.. +.
T Consensus 480 ~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~s~~~~~~~s~~~~ 556 (1005)
T KOG1080|consen 480 RVFHMLRYSVKKKKFLSEWERHTGATAKIWKD---SSRVKDELLPLPKWVESRGRSIMNTYNSEKPKSIVLMGKTSVQRM 556 (1005)
T ss_pred eeecccCcchhhhhcccchhhhhccccccccc---ccccccccccchhhhhhccccccccccccCCcchhhhccchhhhh
Confidence 34778889999999988877666555433211 112334666777777776655566655555555544443322 23
Q ss_pred cCCCCCCCCccccccCCCccccccCCcccCCCeeEEccccCceeccccccccccCCCCceeeecccCCCCCCCCCccccC
Q 002995 380 RDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCP 459 (860)
Q Consensus 380 ~~~p~~~~~~~~~~~~~~~C~vC~~~~~~~~n~ll~C~~C~~~vH~~CYg~~~~~~~~~W~C~~C~~~~~~~~~~C~lC~ 459 (860)
+..+..+......|.+...|.+|.+.+.+..|.++.|++|++.+|+.|||...++.+..|+|+.|... ...+.|+||+
T Consensus 557 ~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~--~~~r~~~l~~ 634 (1005)
T KOG1080|consen 557 LLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCETL--DIKRSCCLCP 634 (1005)
T ss_pred cCcccccchhhhcCCCcccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhccccc--cCCchhhhcc
Confidence 44455566666666677899999999999999999999999999999999999898999999999864 4467899999
Q ss_pred CCCCCceecCCCceeccccccccCceEEccCCCccccccchhhhccccCccceecCCcceeeEEcCCCCcCccccchhhh
Q 002995 460 VVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCAR 539 (860)
Q Consensus 460 ~~gGalk~t~~g~wvH~~Ca~~~p~~~~~~~~~~~~v~~i~~i~~~~~~~~C~~C~~~~Ga~iqC~~~~C~~~fH~~CA~ 539 (860)
.+||||+++..|+|+|+.||.|.|++.+.++..|+|..++..++...+...|.+ .|.|.||. .|.+.||.+||+
T Consensus 635 ~~g~al~p~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~a~ 708 (1005)
T KOG1080|consen 635 VKGGALKPTDEGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI----HGSCRQCC--KCETGSHAMCAS 708 (1005)
T ss_pred ccCcccCCCCccchhhhhchhccccccCCCccCCCCcccccccCccchhhhccc----cccccccc--hhhhcceehhhc
Confidence 999999999999999999999999999999999999999999999988888877 78899998 899999999999
Q ss_pred hcCeeEEEeccccc----------------cccccCCCccccccceeeccccCCCcccchhhhhhccccccccccCCCCC
Q 002995 540 AAGLCVELEDEDRL----------------NLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIPP 603 (860)
Q Consensus 540 ~~g~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~C~~H~~~~~~~~~~~~~~~~~~~~~~~~~p~ 603 (860)
.+|+.++...-... .++.++........+..+++.+|+...... .+.. .++.+
T Consensus 709 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~k~~~~~g~~~-~~~~---------~~~~~- 777 (1005)
T KOG1080|consen 709 RAGYIMEAVSLEEVSQQTTSYVKEDGPGPDSVLKVNTPSGKFGAENLSQNKKSRTDGVRL-VLTY---------KEYAP- 777 (1005)
T ss_pred CccChhhhhhhhhhhhhhhhhhhhccCCcccceeecCccccccccchhhhhhcccccccc-cccc---------ccccc-
Confidence 99987644311111 111121111122222333344433321111 0000 11111
Q ss_pred CCCCCcccCCcccccc--cCCCCChhHHHHhhhccccccCCCcccCCcccCCCCCCCcCcccccccccccccccCCCCcC
Q 002995 604 SNPSGCARSEPYNYFG--RRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFL 681 (860)
Q Consensus 604 ~npsGcaRsE~~~~~~--Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (860)
.+.-|+|.+|++... ...+..+..++.+..+++..+..++..++..++.+..... ....... +.-..+...
T Consensus 778 -~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~r----l~q~rl~--a~~~~~~~~ 850 (1005)
T KOG1080|consen 778 -LREIKSRAEPLNRIDFSSEARCRSESRSDNSKSPLAEESESDITSGGSSHDLSAEER----LNQFRLS--ASFTASFIL 850 (1005)
T ss_pred -cccchhcccCCcccCccccccccchhhcccccccccccccccccccccccchhHHhh----hHHHHhh--hhccccccc
Confidence 123366667765331 1122333445566667777777788777666665432111 1011111 011223446
Q ss_pred ChhhhhHHhhhcccee-EEEEEecccCeeEEeeecCCCCCEEEEecCEeeChhhHhhhHHHhhhcccCCcceeeeecCcc
Q 002995 682 SMADKYKHMKETFRKR-LAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDER 760 (860)
Q Consensus 682 ~~~~~~~~l~~~~~~~-l~v~~s~~~G~GvfA~~~i~~g~~I~ey~Gevi~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~ 760 (860)
..+...+.+|..++++ |.|++|.||||||||.++|.+||||+||+||+|++..||.|+.+ |......++|+|++|++.
T Consensus 851 ~~~~~~~~~~~~~rkk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~-Y~~~gi~~sYlfrid~~~ 929 (1005)
T KOG1080|consen 851 DEAEVLRYNQLKFRKKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREAR-YERMGIGDSYLFRIDDEV 929 (1005)
T ss_pred chHHHHHHHHHhhhhhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHH-HhccCcccceeeecccce
Confidence 6777888888887755 99999999999999999999999999999999999999999975 877766889999999999
Q ss_pred eeeccccCCccccCCCCCCCCeeEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCCCCCCeEEeeCCCCCccccC
Q 002995 761 VIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVN 836 (860)
Q Consensus 761 ~iDa~~~gn~aRfiNHSC~PN~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dY~~~~~~~~~~C~Cg~~~Cr~~~~ 836 (860)
|||||++||+||||||||+|||+++++.|+|+.+|+|||.|+|.+||||||||.|+.++.+++|+||+++|||+||
T Consensus 930 ViDAtk~gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen 930 VVDATKKGNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred EEeccccCchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
|
|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1079 consensus Transcriptional repressor EZH1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain | Back alignment and domain information |
|---|
| >cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF | Back alignment and domain information |
|---|
| >cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha | Back alignment and domain information |
|---|
| >KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) | Back alignment and domain information |
|---|
| >cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S | Back alignment and domain information |
|---|
| >smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain | Back alignment and domain information |
|---|
| >cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis | Back alignment and domain information |
|---|
| >cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids | Back alignment and domain information |
|---|
| >cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions | Back alignment and domain information |
|---|
| >KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] | Back alignment and domain information |
|---|
| >PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified [] | Back alignment and domain information |
|---|
| >smart00293 PWWP domain with conserved PWWP motif | Back alignment and domain information |
|---|
| >KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] | Back alignment and domain information |
|---|
| >cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS | Back alignment and domain information |
|---|
| >cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) | Back alignment and domain information |
|---|
| >cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2 | Back alignment and domain information |
|---|
| >PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant | Back alignment and domain information |
|---|
| >PF13771 zf-HC5HC2H: PHD-like zinc-binding domain | Back alignment and domain information |
|---|
| >COG2940 Proteins containing SET domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant | Back alignment and domain information |
|---|
| >smart00542 FYRC "FY-rich" domain, C-terminal region | Back alignment and domain information |
|---|
| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1904 consensus Transcription coactivator [Transcription] | Back alignment and domain information |
|---|
| >PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco | Back alignment and domain information |
|---|
| >smart00541 FYRN "FY-rich" domain, N-terminal region | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG1084 consensus Transcription factor TCF20 [Transcription] | Back alignment and domain information |
|---|
| >smart00508 PostSET Cysteine-rich motif following a subset of SET domains | Back alignment and domain information |
|---|
| >PF15057 DUF4537: Domain of unknown function (DUF4537) | Back alignment and domain information |
|---|
| >PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [] | Back alignment and domain information |
|---|
| >KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger | Back alignment and domain information |
|---|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 860 | ||||
| 2w5y_A | 192 | Binary Complex Of The Mixed Lineage Leukaemia (Mll1 | 2e-37 | ||
| 3ope_A | 222 | Structural Basis Of Auto-Inhibitory Mechanism Of Hi | 1e-21 | ||
| 3ooi_A | 232 | Crystal Structure Of Human Histone-Lysine N-Methylt | 5e-18 | ||
| 4fmu_A | 278 | Crystal Structure Of Methyltransferase Domain Of Hu | 6e-14 | ||
| 2r3a_A | 300 | Methyltransferase Domain Of Human Suppressor Of Var | 7e-14 | ||
| 3hna_A | 287 | Crystal Structure Of Catalytic Domain Of Human Euch | 1e-12 | ||
| 2igq_A | 285 | Human Euchromatic Histone Methyltransferase 1 Lengt | 2e-12 | ||
| 3fpd_A | 261 | G9a-Like Protein Lysine Methyltransferase Inhibitio | 3e-12 | ||
| 3k5k_A | 283 | Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin | 4e-12 | ||
| 2o8j_A | 281 | Human Euchromatic Histone Methyltransferase 2 Lengt | 5e-12 | ||
| 4ij8_A | 165 | Crystal Structure Of The Complex Of Setd8 With Sam | 9e-12 | ||
| 4i51_A | 286 | Methyltransferase Domain Of Human Euchromatic Histo | 1e-11 | ||
| 1zkk_A | 167 | Crystal Structure Of Hset8 In Ternary Complex With | 2e-11 | ||
| 2bqz_A | 161 | Crystal Structure Of A Ternary Complex Of The Human | 3e-11 | ||
| 3f9z_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 7e-11 | ||
| 3f9w_A | 166 | Structural Insights Into Lysine Multiple Methylatio | 7e-11 | ||
| 1mvh_A | 299 | Structure Of The Set Domain Histone Lysine Methyltr | 2e-07 | ||
| 3bo5_A | 290 | Crystal Structure Of Methyltransferase Domain Of Hu | 3e-07 | ||
| 2wzo_A | 146 | The Structure Of The Fyr Domain Length = 146 | 7e-07 | ||
| 1ml9_A | 302 | Structure Of The Neurospora Set Domain Protein Dim- | 3e-06 | ||
| 4fu6_A | 153 | Crystal Structure Of The Psip1 Pwwp Domain Length = | 1e-04 | ||
| 2lq6_A | 87 | Solution Structure Of Brd1 Phd2 Finger Length = 87 | 6e-04 |
| >pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 | Back alignment and structure |
|
| >pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 | Back alignment and structure |
| >pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 | Back alignment and structure |
| >pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 | Back alignment and structure |
| >pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 | Back alignment and structure |
| >pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 | Back alignment and structure |
| >pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 | Back alignment and structure |
| >pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 | Back alignment and structure |
| >pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 | Back alignment and structure |
| >pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 | Back alignment and structure |
| >pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 | Back alignment and structure |
| >pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 | Back alignment and structure |
| >pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 | Back alignment and structure |
| >pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 | Back alignment and structure |
| >pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 | Back alignment and structure |
| >pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 | Back alignment and structure |
| >pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 | Back alignment and structure |
| >pdb|2WZO|A Chain A, The Structure Of The Fyr Domain Length = 146 | Back alignment and structure |
| >pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 | Back alignment and structure |
| >pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain Length = 153 | Back alignment and structure |
| >pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger Length = 87 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 5e-72
Identities = 77/164 (46%), Positives = 105/164 (64%), Gaps = 4/164 (2%)
Query: 675 RDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSI 734
R L M +++H+K+T ++ + +S IHG G+F K AG+MVIEY G ++R
Sbjct: 31 RATSMDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQ 90
Query: 735 ADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEH 794
D+RE + + G G YMFRIDD V+DAT G+ A INHSCEPNCYSRVI+++G +H
Sbjct: 91 TDKREKYYDSK--GIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKH 148
Query: 795 IIIFAKRDIKQWEELTYDYRF--FSIDEQLACYCGFPRCRGVVN 836
I+IFA R I + EELTYDY+F +L C CG +CR +N
Sbjct: 149 IVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN 192
|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 | Back alignment and structure |
|---|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
| >2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Length = 146 | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 | Back alignment and structure |
|---|
| >2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 Length = 110 | Back alignment and structure |
|---|
| >2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} Length = 108 | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 | Back alignment and structure |
|---|
| >1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Length = 147 | Back alignment and structure |
|---|
| >3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} Length = 154 | Back alignment and structure |
|---|
| >2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Length = 110 | Back alignment and structure |
|---|
| >3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A Length = 94 | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A* Length = 158 | Back alignment and structure |
|---|
| >3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A* Length = 130 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 860 | |||
| 2w5y_A | 192 | Histone-lysine N-methyltransferase HRX; transcript | 100.0 | |
| 3h6l_A | 278 | Histone-lysine N-methyltransferase SETD2; SET doma | 100.0 | |
| 3ooi_A | 232 | Histone-lysine N-methyltransferase, H3 lysine-36 l | 100.0 | |
| 3ope_A | 222 | Probable histone-lysine N-methyltransferase ASH1L; | 100.0 | |
| 2wzo_A | 146 | Transforming growth factor beta regulator 1; nucle | 100.0 | |
| 3bo5_A | 290 | Histone-lysine N-methyltransferase setmar; SET dom | 100.0 | |
| 1mvh_A | 299 | Cryptic LOCI regulator 4; lysine methyltransferase | 100.0 | |
| 1ml9_A | 302 | Histone H3 methyltransferase DIM-5; adoMet-depende | 99.98 | |
| 2r3a_A | 300 | Histone-lysine N-methyltransferase SUV39H2; histon | 99.98 | |
| 3hna_A | 287 | Histone-lysine N-methyltransferase, H3 lysine-9 sp | 99.97 | |
| 3f9x_A | 166 | Histone-lysine N-methyltransferase SETD8; methyltr | 99.96 | |
| 2f69_A | 261 | Histone-lysine N-methyltransferase, H3 lysine-4 sp | 99.92 | |
| 2qpw_A | 149 | PR domain zinc finger protein 2; methyltransferase | 99.92 | |
| 1n3j_A | 119 | A612L, histone H3 lysine methyltransferase; beta b | 99.92 | |
| 1h3i_A | 293 | Histone H3 lysine 4 specific methyltransferase; 2. | 99.91 | |
| 3s8p_A | 273 | Histone-lysine N-methyltransferase SUV420H1; SET d | 99.9 | |
| 2daq_A | 110 | WHSC1L1 protein, isoform long; PWWP domain, struct | 99.88 | |
| 3qby_A | 94 | Hepatoma-derived growth factor-related protein 2; | 99.87 | |
| 4fu6_A | 153 | PC4 and SFRS1-interacting protein; structural geno | 99.87 | |
| 1ri0_A | 110 | Hepatoma-derived growth factor; HDGF, HATH domain, | 99.86 | |
| 2l89_A | 108 | PWWP domain-containing protein 1; histone binding, | 99.85 | |
| 2gfu_A | 134 | DNA mismatch repair protein MSH6; PWWP domain, tud | 99.85 | |
| 3llr_A | 154 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 99.85 | |
| 3rq4_A | 247 | Histone-lysine N-methyltransferase SUV420H2; suppr | 99.83 | |
| 1h3z_A | 109 | Hypothetical 62.8 kDa protein C215.07C; nuclear pr | 99.83 | |
| 1khc_A | 147 | DNA cytosine-5 methyltransferase 3B2; five beta-sh | 99.82 | |
| 3pfs_A | 158 | Bromodomain and PHD finger-containing protein 3; s | 99.75 | |
| 3ep0_A | 170 | PR domain zinc finger protein 12; PR domain-contai | 99.75 | |
| 3l42_A | 130 | Peregrin; transcription regulation, histone H3 ace | 99.73 | |
| 3dal_A | 196 | PR domain zinc finger protein 1; methyltransferase | 99.7 | |
| 3db5_A | 151 | PR domain zinc finger protein 4; methyltransferase | 99.7 | |
| 3ray_A | 237 | PR domain-containing protein 11; structural genomi | 99.55 | |
| 2lq6_A | 87 | Bromodomain-containing protein 1; PHD finger, meta | 99.51 | |
| 3ihx_A | 152 | PR domain zinc finger protein 10; PRDM10, methyltr | 99.43 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 98.88 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 98.72 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 98.55 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.46 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 98.43 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.35 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 98.27 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 98.27 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 98.24 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 98.13 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 98.12 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 98.08 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 98.07 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 98.05 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 98.04 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 98.03 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 98.0 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.99 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 97.97 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 97.96 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 97.93 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 97.9 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 97.73 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 97.66 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 97.54 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 97.53 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 97.52 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.46 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 97.46 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 97.43 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 97.41 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 97.4 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 97.36 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 97.35 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 97.29 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 97.22 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 97.21 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 97.16 | |
| 3pmi_A | 134 | PWWP domain-containing protein MUM1; structural ge | 97.12 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 96.68 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 96.61 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 96.58 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 96.49 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 96.44 | |
| 3qxy_A | 449 | N-lysine methyltransferase SETD6; epigenetics, pro | 96.26 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 96.11 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 95.91 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 95.86 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 95.84 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 95.76 | |
| 2h21_A | 440 | Ribulose-1,5 bisphosphate carboxylase/oxygenase; S | 95.59 | |
| 3qii_A | 85 | PHD finger protein 20; tudor domain, structural ge | 95.51 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 95.3 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 95.15 | |
| 2lbm_A | 142 | Transcriptional regulator ATRX; metal binding prot | 95.05 | |
| 3p8d_A | 67 | Medulloblastoma antigen MU-MB-50.72; tudor domain, | 95.01 | |
| 3smt_A | 497 | Histone-lysine N-methyltransferase SETD3; histone | 94.74 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 94.45 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 93.82 | |
| 3h8z_A | 128 | FragIle X mental retardation syndrome-related Pro; | 93.63 | |
| 3ql9_A | 129 | Transcriptional regulator ATRX; zinc finger, trans | 93.22 | |
| 2yrv_A | 117 | AT-rich interactive domain-containing protein 4A; | 93.19 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 91.94 | |
| 2f5k_A | 102 | MORF-related gene 15 isoform 1; beta barrel, gene | 91.35 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 91.31 | |
| 4a4f_A | 64 | SurviVal of motor neuron-related-splicing factor; | 91.29 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 90.62 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 90.3 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 90.11 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 89.76 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 88.59 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 88.51 | |
| 3s6w_A | 54 | Tudor domain-containing protein 3; methylated argi | 87.41 | |
| 1mhn_A | 59 | SurviVal motor neuron protein; SMN, SMA, spinal mu | 87.4 | |
| 4hcz_A | 58 | PHD finger protein 1; protein-peptide complex, tud | 87.25 | |
| 2d9t_A | 78 | Tudor domain-containing protein 3; structural geno | 86.9 | |
| 3pnw_C | 77 | Tudor domain-containing protein 3; FAB, structural | 86.79 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 86.77 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 86.17 | |
| 2ldm_A | 81 | Uncharacterized protein; PHF20, tudor domain, epig | 85.91 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 85.63 | |
| 2equ_A | 74 | PHD finger protein 20-like 1; tudor domain, struct | 85.08 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 84.86 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 84.7 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 84.23 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 84.14 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 83.95 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 83.42 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 83.28 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 82.59 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 82.53 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 82.4 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 82.3 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 81.89 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 81.88 | |
| 2eqj_A | 66 | Metal-response element-binding transcription facto | 81.83 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 81.55 | |
| 2lrq_A | 85 | Protein MRG15, NUA4 complex subunit EAF3 homolog; | 82.03 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 80.98 | |
| 1g5v_A | 88 | SurviVal motor neuron protein 1; mRNA processing, | 80.27 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 80.21 | |
| 2zet_C | 153 | Melanophilin; complex, GTP-binding protein, GTPase | 80.07 |
| >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=310.88 Aligned_cols=156 Identities=51% Similarity=0.921 Sum_probs=141.0
Q ss_pred CcCChhhhhHHhhhccceeEEEEEecccCeeEEeeecCCCCCEEEEecCEeeChhhHhhhHHHhhhcccCCcceeeeecC
Q 002995 679 NFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDD 758 (860)
Q Consensus 679 ~~~~~~~~~~~l~~~~~~~l~v~~s~~~G~GvfA~~~i~~g~~I~ey~Gevi~~~~~~~r~~~~~~~~~~~~~y~~~~~~ 758 (860)
..+++.++++.||++.+.+|+|++|+++||||||+++|++|++|+||+|++|+..+++.|+.. |+. .+.+.|+|.+++
T Consensus 35 ~~~~~~~~~~~l~~~~~~~l~V~~s~~~G~GlfA~~~I~~G~~I~EY~Gevi~~~e~~~R~~~-y~~-~~~~~Y~f~l~~ 112 (192)
T 2w5y_A 35 MDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKY-YDS-KGIGCYMFRIDD 112 (192)
T ss_dssp SSCCHHHHHTTHHHHHHHHEEEEECSSSSEEEEESSCBCTTCEEEECCSEEEEGGGHHHHHHH-HHH-HTCCCCEEECSS
T ss_pred CCCCcchhHHHHhccCCCcEEEEEcCCceeEEEECcccCCCCEEEEeeeeEechHHHHHHHHH-Hhh-cCCceeeeeecC
Confidence 456889999999999999999999999999999999999999999999999999999988864 543 345689999999
Q ss_pred cceeeccccCCccccCCCCCCCCeeEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCCCC--CCeEEeeCCCCCccccC
Q 002995 759 ERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSID--EQLACYCGFPRCRGVVN 836 (860)
Q Consensus 759 ~~~iDa~~~gn~aRfiNHSC~PN~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dY~~~~~~--~~~~C~Cg~~~Cr~~~~ 836 (860)
..+|||+..||++|||||||+|||.++.+.+++..+|+|+|+|||++||||||||++...+ ..+.|+||+++|||+||
T Consensus 113 ~~~IDa~~~Gn~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~~~~~~C~Cgs~~Crg~ln 192 (192)
T 2w5y_A 113 SEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN 192 (192)
T ss_dssp SEEEECTTTCCGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC-------CCBCCCCCTTCCSBCC
T ss_pred ceEEECccccChhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcCCCCceeECCCCCCcCcCC
Confidence 9999999999999999999999999998889999999999999999999999999987654 57999999999999997
|
| >3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} | Back alignment and structure |
|---|
| >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A | Back alignment and structure |
|---|
| >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* | Back alignment and structure |
|---|
| >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* | Back alignment and structure |
|---|
| >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* | Back alignment and structure |
|---|
| >2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* | Back alignment and structure |
|---|
| >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* | Back alignment and structure |
|---|
| >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* | Back alignment and structure |
|---|
| >1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A | Back alignment and structure |
|---|
| >3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 | Back alignment and structure |
|---|
| >3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A | Back alignment and structure |
|---|
| >4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A | Back alignment and structure |
|---|
| >1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A | Back alignment and structure |
|---|
| >2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0 | Back alignment and structure |
|---|
| >3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* | Back alignment and structure |
|---|
| >3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A* | Back alignment and structure |
|---|
| >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A* | Back alignment and structure |
|---|
| >3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
| >2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens} | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* | Back alignment and structure |
|---|
| >3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A | Back alignment and structure |
|---|
| >3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A | Back alignment and structure |
|---|
| >2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* | Back alignment and structure |
|---|
| >1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* | Back alignment and structure |
|---|
| >4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 860 | ||||
| d2f69a2 | 171 | b.85.7.1 (A:194-364) Histone H3 K4-specific methyl | 2e-28 | |
| d1mvha_ | 269 | b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S | 3e-26 | |
| d1ml9a_ | 284 | b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T | 4e-22 | |
| d2g46a1 | 119 | b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth | 2e-20 | |
| d2nlua1 | 100 | b.34.9.2 (A:1-100) Hepatoma-derived growth factor, | 5e-18 | |
| d2daqa1 | 97 | b.34.9.2 (A:8-104) Histone-lysine N-methyltransfer | 7e-18 | |
| d1h3za_ | 108 | b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fi | 2e-15 | |
| d1khca_ | 137 | b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse | 2e-13 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 4e-05 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 7e-05 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 4e-04 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 0.002 | |
| d2h2ja2 | 261 | b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain | 0.002 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 0.004 |
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (274), Expect = 2e-28
Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 22/150 (14%)
Query: 695 RKRLAFGKSGIH--GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTY 752
+R+ +S I G G+F+K ++ Y G + D R+ N
Sbjct: 20 SERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWA-LNG------N 72
Query: 753 MFRIDDERVIDATR--------AGSIAHLINHSCEPNC-YSRVISVNGDEHIIIFAKRDI 803
+D+E VID S+ H NHS PNC Y + I R +
Sbjct: 73 TLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAV 132
Query: 804 KQWEELTYDYRFFSIDEQLACYCGFPRCRG 833
+ EELT Y + + P
Sbjct: 133 EADEELTVAYGY----DHSPPGKSGPEAPE 158
|
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 | Back information, alignment and structure |
|---|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 | Back information, alignment and structure |
|---|
| >d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
| >d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
| >d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 108 | Back information, alignment and structure |
|---|
| >d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 860 | |||
| d1mvha_ | 269 | SET domain of Clr4 {Fission yeast (Schizosaccharom | 99.96 | |
| d1ml9a_ | 284 | Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | 99.96 | |
| d2f69a2 | 171 | Histone H3 K4-specific methyltransferase SET7/9 ca | 99.9 | |
| d2daqa1 | 97 | Histone-lysine N-methyltransferase NSD3 {Human (Ho | 99.88 | |
| d2nlua1 | 100 | Hepatoma-derived growth factor, HDGF {Human (Homo | 99.87 | |
| d2g46a1 | 119 | Viral histone H3 Lysine 27 Methyltransferase {Para | 99.86 | |
| d1h3za_ | 108 | Hypothetical protein SPBC215.07c {Fission yeast (S | 99.84 | |
| d1khca_ | 137 | DNA methyltransferase DNMT3B {Mouse (Mus musculus) | 99.83 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.02 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 98.0 | |
| d2h2ja2 | 261 | RuBisCo LSMT catalytic domain {Garden pea (Pisum s | 97.89 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 97.75 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 97.64 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 97.57 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 97.48 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 97.07 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.91 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 96.88 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 96.77 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 96.53 | |
| d2f5ka1 | 83 | Mortality factor 4-like protein 1, MRG15 {Human (H | 90.91 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 90.7 | |
| d1zbdb_ | 124 | Effector domain of rabphilin-3a {Rat (Rattus norve | 88.17 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 87.98 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 86.27 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 84.7 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 84.65 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 84.32 | |
| d1wila_ | 89 | Hypothetical protein KIAA1045 {Human (Homo sapiens | 83.85 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 83.28 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 82.97 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 82.8 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 82.53 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 82.5 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 81.6 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 81.11 |
| >d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-clip superfamily: SET domain family: Histone lysine methyltransferases domain: SET domain of Clr4 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.96 E-value=6.8e-30 Score=268.89 Aligned_cols=135 Identities=29% Similarity=0.422 Sum_probs=120.0
Q ss_pred ChhhhhHHhhhccceeEEEEEecccCeeEEeeecCCCCCEEEEecCEeeChhhHhhhHHHhhhcccCCcceeeeec----
Q 002995 682 SMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRID---- 757 (860)
Q Consensus 682 ~~~~~~~~l~~~~~~~l~v~~s~~~G~GvfA~~~i~~g~~I~ey~Gevi~~~~~~~r~~~~~~~~~~~~~y~~~~~---- 757 (860)
...|.|+.+|++.+.+|+|++++.+||||||+++|++|++|+||.|++|+..+++.|+.. |+. ...+|+|.+.
T Consensus 122 ~~~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~~~e~~~R~~~-y~~--~~~~~~~~l~~~~~ 198 (269)
T d1mvha_ 122 SMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKN-YDD--DGITYLFDLDMFDD 198 (269)
T ss_dssp CTTCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTT-CCS--CSCCCEEEECSSCS
T ss_pred CCCCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEcHHHHHHHHHh-Hhh--cCCcchhheecccc
Confidence 457899999999999999999999999999999999999999999999999999999874 432 2346777764
Q ss_pred -CcceeeccccCCccccCCCCCCCCeeEEEEEECCe----eEEEEEEccCCCCCCeEEEecCCCCCC
Q 002995 758 -DERVIDATRAGSIAHLINHSCEPNCYSRVISVNGD----EHIIIFAKRDIKQWEELTYDYRFFSID 819 (860)
Q Consensus 758 -~~~~iDa~~~gn~aRfiNHSC~PN~~~~~~~~~~~----~~i~i~A~RdI~~GEELt~dY~~~~~~ 819 (860)
..++|||+..||++|||||||+|||.+..+++++. ++|+|||+|||++|||||||||+..+.
T Consensus 199 ~~~~~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~~d~ 265 (269)
T d1mvha_ 199 ASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDF 265 (269)
T ss_dssp SSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSSS
T ss_pred cccceeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCCcCC
Confidence 56799999999999999999999999999888754 689999999999999999999986443
|
| >d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} | Back information, alignment and structure |
|---|
| >d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|