Citrus Sinensis ID: 003002
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | 2.2.26 [Sep-21-2011] | |||||||
| Q93Y94 | 1002 | DNA-directed RNA polymera | N/A | no | 0.970 | 0.831 | 0.699 | 0.0 | |
| Q8L6J5 | 1002 | DNA-directed RNA polymera | N/A | no | 0.982 | 0.841 | 0.675 | 0.0 | |
| Q8L6J3 | 1021 | DNA-directed RNA polymera | N/A | no | 0.986 | 0.828 | 0.647 | 0.0 | |
| Q8VWF8 | 1020 | DNA-directed RNA polymera | N/A | no | 0.975 | 0.820 | 0.643 | 0.0 | |
| P92969 | 976 | DNA-directed RNA polymera | yes | no | 0.982 | 0.863 | 0.632 | 0.0 | |
| Q9LFV6 | 1011 | DNA-directed RNA polymera | no | no | 0.976 | 0.828 | 0.631 | 0.0 | |
| P69242 | 977 | DNA-directed RNA polymera | N/A | no | 0.817 | 0.717 | 0.642 | 0.0 | |
| P69243 | 977 | DNA-directed RNA polymera | N/A | no | 0.817 | 0.717 | 0.642 | 0.0 | |
| O24600 | 993 | DNA-directed RNA polymera | no | no | 0.843 | 0.729 | 0.607 | 0.0 | |
| Q8L6J1 | 977 | DNA-directed RNA polymera | N/A | no | 0.818 | 0.718 | 0.643 | 0.0 |
| >sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1181 bits (3056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/852 (69%), Positives = 692/852 (81%), Gaps = 19/852 (2%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE +E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+++K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQALDTLG+TKWR+N+++LG++DR+WA
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWA 506
Query: 485 SGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVAR 544
SGG LA LVD+EDVPLPE+P+ +DE +I+KWKWKVK KK+N E+HSQRCDIELKL+VAR
Sbjct: 507 SGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVAR 566
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
KMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLA
Sbjct: 567 KMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLA 626
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N+Y GGVDKLSYEGRVAF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EAL
Sbjct: 627 NVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL 686
Query: 665 RSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLE 724
RSPSPE+ IS++P+H DGSCNGLQHYAALGRD LGAAAVNLV GDKPADVYSGIAARVL+
Sbjct: 687 RSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLD 746
Query: 725 IMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCA 784
IM+ DA KDPA P ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER
Sbjct: 747 IMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGV 806
Query: 785 IEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPV 844
IEDD++LF AACYAAKTTLTALGEMFEAARSIMSWLG+CAK+IA EN VRWTTPLGLPV
Sbjct: 807 IEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPV 866
Query: 845 VQPYHQLGRHLV 856
VQPY +LGRHL+
Sbjct: 867 VQPYRKLGRHLI 878
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DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Nicotiana sylvestris (taxid: 4096) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6 |
| >sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2 | Back alignment and function description |
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| >sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1 | Back alignment and function description |
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| >sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1 | Back alignment and function description |
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| >sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | ||||||
| 225425009 | 978 | PREDICTED: DNA-directed RNA polymerase 1 | 0.979 | 0.858 | 0.719 | 0.0 | |
| 449435282 | 968 | PREDICTED: DNA-directed RNA polymerase 2 | 0.972 | 0.861 | 0.676 | 0.0 | |
| 255547027 | 997 | DNA-directed RNA polymerase 2, chloropla | 0.997 | 0.858 | 0.703 | 0.0 | |
| 224099265 | 877 | predicted protein [Populus trichocarpa] | 0.851 | 0.833 | 0.759 | 0.0 | |
| 224111836 | 852 | predicted protein [Populus trichocarpa] | 0.842 | 0.848 | 0.773 | 0.0 | |
| 15823750 | 1002 | T7 bacteriophage-type single subunit RNA | 0.970 | 0.831 | 0.697 | 0.0 | |
| 225451858 | 1035 | PREDICTED: DNA-directed RNA polymerase 2 | 0.987 | 0.818 | 0.673 | 0.0 | |
| 21425663 | 1002 | mitochondrial RNA polymerase [Nicotiana | 0.970 | 0.831 | 0.700 | 0.0 | |
| 34925359 | 1002 | RecName: Full=DNA-directed RNA polymeras | 0.970 | 0.831 | 0.699 | 0.0 | |
| 88933965 | 1002 | RecName: Full=DNA-directed RNA polymeras | 0.982 | 0.841 | 0.675 | 0.0 |
| >gi|225425009|ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1263 bits (3268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/870 (71%), Positives = 716/870 (82%), Gaps = 30/870 (3%)
Query: 1 MWRNLARQSSTRNFKFSPS-------KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTS 53
MWRNLA+ + TR + S + F K +LE+Q ++S P+ G RR
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIG 60
Query: 54 FLSSQKSNLGQSNFTQSIYP---FGVLT-SRSYASAAEAIASESELSGSEEVQELIDQFN 109
LS Q+ LG+ F + P FG+ + YASAAEAIASE ++SG +EVQEL+++ N
Sbjct: 61 VLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELVEEVN 120
Query: 110 EKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ L+KQPK G G+ K+ +L+RRQIK+ETEAWE+AAKEY++LL+DMCE
Sbjct: 121 K--------GDKLEKQPKLIG-GVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCE 171
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPY+KSLFLGWFEPLRD IA +Q + YAPYF++LPADMMAVITMHK
Sbjct: 172 QKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHK 231
Query: 230 LVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+GLLMT G RVVQAAC IGEAIE+E RIQ F + TKKK+A+ NN +G S P+T
Sbjct: 232 LMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVT-- 289
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
KEQEKL+K+V+ L+KKQKLQQVR IVK DSKPWGQDA VKVG RLI+LL+ETA
Sbjct: 290 -----KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETA 344
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMII 406
YIQPP DQLGD PPDIRPAFVHTLK+ KE KG RRYGVIECDPLVRKGLEKT RHM+I
Sbjct: 345 YIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVI 404
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGS 466
PYMPMLVPPLNW GY++G + FLPSYVMR HGARQQRE IK PR LEP F+AL+TLG+
Sbjct: 405 PYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGN 464
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
TKWR+NKR+LGVIDR+WASGG LA LVD+EDVPLPE+P+T+DE EI+KWKWKV++ KK+N
Sbjct: 465 TKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKEN 524
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
SE+HSQRCDIELKL+VARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF
Sbjct: 525 SERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 584
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
EG PLGK+GL WLKIHLAN+YAGGVDKLSYEGRVAFTENHL+DIFDSADRPLEGRRWWL
Sbjct: 585 EGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLS 644
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLV 706
AEDPFQCLATCINLSEALRS SPE+TISH+PVH DGSCNGLQHYAALGRDKLGAAAVNLV
Sbjct: 645 AEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 704
Query: 707 GGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGV 766
G+KPADVYSGIAARVL+IM+ DA KDPAT P A ARLLI+QVDRKLVKQTVMTSVYGV
Sbjct: 705 AGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGV 764
Query: 767 TYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKV 826
TYIGARDQIK+RLKERCAI D+ ++F A+CYAAKTTLTALGEMFEAARSIMSWLG+CAKV
Sbjct: 765 TYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKV 824
Query: 827 IASENQAVRWTTPLGLPVVQPYHQLGRHLV 856
IASEN VRW TPLGLPVVQPY +LGRHL+
Sbjct: 825 IASENHPVRWNTPLGLPVVQPYRKLGRHLI 854
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435282|ref|XP_004135424.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255547027|ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis] gi|223546175|gb|EEF47677.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224099265|ref|XP_002311418.1| predicted protein [Populus trichocarpa] gi|222851238|gb|EEE88785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224111836|ref|XP_002315996.1| predicted protein [Populus trichocarpa] gi|222865036|gb|EEF02167.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|15823750|dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
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| >gi|225451858|ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|21425663|emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
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| >gi|34925359|sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName: Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 1; Flags: Precursor gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
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| >gi|88933965|sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName: Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 1B; Flags: Precursor | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | ||||||
| UNIPROTKB|Q93Y94 | 1002 | RPOT1 "DNA-directed RNA polyme | 0.970 | 0.831 | 0.670 | 4e-307 | |
| UNIPROTKB|Q8VWF8 | 1020 | RPOT2 "DNA-directed RNA polyme | 0.989 | 0.832 | 0.621 | 1.4e-286 | |
| UNIPROTKB|P69242 | 977 | RPOT3 "DNA-directed RNA polyme | 0.826 | 0.725 | 0.625 | 7.3e-249 | |
| TAIR|locus:2047515 | 993 | SCA3 "SCABRA 3" [Arabidopsis t | 0.843 | 0.729 | 0.596 | 1.1e-243 | |
| DICTYBASE|DDB_G0267416 | 950 | rpmA "DNA-dependent RNA polyme | 0.617 | 0.557 | 0.403 | 6.3e-110 | |
| ASPGD|ASPL0000068622 | 1391 | AN7609 [Emericella nidulans (t | 0.571 | 0.352 | 0.413 | 1.5e-107 | |
| UNIPROTKB|F1PCF7 | 1221 | POLRMT "DNA-directed RNA polym | 0.594 | 0.417 | 0.402 | 2.8e-103 | |
| UNIPROTKB|J9P8Y8 | 1414 | POLRMT "DNA-directed RNA polym | 0.594 | 0.360 | 0.402 | 1.8e-102 | |
| SGD|S000001858 | 1351 | RPO41 "Mitochondrial RNA polym | 0.587 | 0.373 | 0.403 | 3.1e-100 | |
| POMBASE|SPAC26H5.12 | 1154 | rpo41 "mitochondrial RNA polym | 0.790 | 0.587 | 0.342 | 3.4e-100 |
| UNIPROTKB|Q93Y94 RPOT1 "DNA-directed RNA polymerase 1, mitochondrial" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
Score = 2921 (1033.3 bits), Expect = 4.0e-307, Sum P(2) = 4.0e-307
Identities = 571/852 (67%), Positives = 658/852 (77%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTXXXXXXXXXXXXXXXXXXXXXXVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L +QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS----GSLGFLRSYGSAAEAIASTSEEDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXXXXXXXXRVTSL 305
AA IGEAIE+EARI F + TKK NA L GD E + P +V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNA----LSGDLE---DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQALDTLG+TKWR+N+++LG++DR+WA
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWA 506
Query: 485 SGGCLAGLVDQEDVPLPEKPNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVAR 544
SGG LA LVD+EDVPLPE+P+ +DE +I +N E+HSQRCDIELKL+VAR
Sbjct: 507 SGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVAR 566
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
KMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLA
Sbjct: 567 KMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLA 626
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N+Y GGVDKLSYEGRVAF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EAL
Sbjct: 627 NVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL 686
Query: 665 RSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLE 724
RSPSPE+ IS++P+H DGSCNGLQHYAALGRD LGAAAVNLV GDKPADVYSGIAARVL+
Sbjct: 687 RSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLD 746
Query: 725 IMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCA 784
IM+ DA KDPA P ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER
Sbjct: 747 IMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGV 806
Query: 785 IEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPV 844
IEDD++LF AACYAAKTTLTALGEMFEAARSIMSWLG+CAK+IA EN VRWTTPLGLPV
Sbjct: 807 IEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPV 866
Query: 845 VQPYHQLGRHLV 856
VQPY +LGRHL+
Sbjct: 867 VQPYRKLGRHLI 878
|
|
| UNIPROTKB|Q8VWF8 RPOT2 "DNA-directed RNA polymerase 2, chloroplastic/mitochondrial" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P69242 RPOT3 "DNA-directed RNA polymerase 3, chloroplastic" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2047515 SCA3 "SCABRA 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0267416 rpmA "DNA-dependent RNA polymerase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000068622 AN7609 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PCF7 POLRMT "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P8Y8 POLRMT "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| SGD|S000001858 RPO41 "Mitochondrial RNA polymerase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC26H5.12 rpo41 "mitochondrial RNA polymerase Rpo41" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93Y94 | RPOT1_NICSY | 2, ., 7, ., 7, ., 6 | 0.6995 | 0.9708 | 0.8313 | N/A | no |
| P92969 | RPOT1_ARATH | 2, ., 7, ., 7, ., 6 | 0.6323 | 0.9825 | 0.8637 | yes | no |
| Q8VWF8 | RPOT2_NICSY | 2, ., 7, ., 7, ., 6 | 0.6435 | 0.9755 | 0.8205 | N/A | no |
| Q8L6J5 | RPO1B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6756 | 0.9825 | 0.8413 | N/A | no |
| Q8L6J3 | RPO2B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6471 | 0.9860 | 0.8285 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.963 |
| 4th Layer | 2.7.7.6 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 858 | |||
| COG5108 | 1117 | COG5108, RPO41, Mitochondrial DNA-directed RNA pol | 1e-152 | |
| PHA00452 | 807 | PHA00452, PHA00452, T3/T7-like RNA polymerase | 1e-137 | |
| pfam00940 | 394 | pfam00940, RNA_pol, DNA-dependent RNA polymerase | 1e-131 |
| >gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
Score = 476 bits (1226), Expect = e-152
Identities = 265/879 (30%), Positives = 396/879 (45%), Gaps = 114/879 (12%)
Query: 16 FSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNFTQSIYPFG 75
FSP +V + L + S LLG ++ + ++ Q+ S+
Sbjct: 147 FSPEEVKLIMDQLNIPIN----NFTPSQLQLLGITNSTIVGESENGKDQNG-DSSLKEKQ 201
Query: 76 VLTSRSYASAAEAIASESELSG--SEEVQEL-IDQFNEKGVSILDSSSMLDKQPKKKGTG 132
+ +A A S LS +E + L +D+ NE ++
Sbjct: 202 PDVETTVTKSANLNALRSSLSSLLTESIDMLPLDETNELFLAAHGC-------------- 247
Query: 133 MGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY-VKSLFLGWFEPLR 191
T + L++ I + E W+ + + E++ N ++ L W+ +
Sbjct: 248 FNTERQKWLEKSAIALAEEMWKAGIERF--------EKRGEKNREKNAEASNLSWYRMII 299
Query: 192 DAIAK----------DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE- 240
+ +A+ K +TY PY D +A +T+ +L L+ +
Sbjct: 300 HLHKEEIAGLLEALLAEASLGKAGKRLTYGPYLKLADLDKVAHLTIRELFDLVSMRRYDR 359
Query: 241 -VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLK 299
+R+ + ++G +E+E + F K PE+
Sbjct: 360 GMRLTPLSIRLGAMVEDEFFSEQFKGHEKDAYEDARK---------KIPEQF----HNAV 406
Query: 300 KRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQL--G 357
S+ + K + W QD KVG + LL+ A I+ + +
Sbjct: 407 HNKRSMTRHAKHKGAE------WQD--WPQDIKAKVGSVALCLLLSVAKIEVKLIDIATE 458
Query: 358 DSPPDIRPAFVHTLKSFTKEALKGRRYGVI----ECDPLVRKGLEKTGRHMIIPYMPMLV 413
+ AF H+ + G + GV+ D L+ + + +PMLV
Sbjct: 459 QTLKGEFEAFRHS-----YQYHNGTKIGVVATHETLDWLLTENSRLA--PLSPQLLPMLV 511
Query: 414 PPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRS-QLEPVFQALDTLGSTKWRVN 472
PP W + RGG+++ ++R +Q + M + ++ V+ +++ LG+T W +N
Sbjct: 512 PPKPWTSWFRGGYWYGRVRLLRLKKTGEQVRYLLMASENGDMDKVYHSINALGNTAWSIN 571
Query: 473 KRILGVIDRMWASGG---CLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEK 529
R+ V+ +W +G C+ D P P E +WK + KT + N+
Sbjct: 572 HRVFEVMASLWNNGETFLCIPQADDMWLAP-PMPREDMSPEEFSRWKSERKTIAEANARA 630
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
S+RCD KL +AR DE+ FY+PH LDFRGRAYP+ +LNH G+D RG+L+F G
Sbjct: 631 VSKRCDFNYKLEIARAFLDEK-FYFPHQLDFRGRAYPLSLHLNHQGNDASRGLLQFANGK 689
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAED 649
PLG GL WLKIHLANL+ GVDK S RVAF + +I DSA+ PL+G RWWL A+
Sbjct: 690 PLGPEGLDWLKIHLANLF--GVDKCSMNERVAFVMANQQEILDSAENPLDGNRWWLTADK 747
Query: 650 PFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGD 709
P+Q LA C E + E+ ISH+PV DG+CNGLQHYAALG D+ GAA VNLV D
Sbjct: 748 PWQALAFCFEWQEYVAEGDHEAFISHLPVQQDGTCNGLQHYAALGGDEEGAAQVNLVPSD 807
Query: 710 KPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYI 769
KP DVY+ +A+ V+ +R A+ T A+ L ++ R +VK+TVMT+VYGVTY+
Sbjct: 808 KPNDVYATVASVVIAKLRDIAEAGDET------AKELKDKETRTVVKETVMTNVYGVTYV 861
Query: 770 GARDQIKKRLKERCAIEDDSKLFGA--ACYAAKTTLTALGEMFEAARSIMSWLGECAKVI 827
GA QI KRL I SK Y K A +F AA I WL +C I
Sbjct: 862 GATRQITKRLT---LIYGASKFDTVDPWKYLTKEVFPAERTLFAAAHFIQDWLWDCVGEI 918
Query: 828 ------------------ASENQAVRWTTPLGLPVVQPY 848
A E+ V WTTPLGLP+VQPY
Sbjct: 919 VVSAAGDMDWLQKKAGIKADESLPVIWTTPLGLPIVQPY 957
|
Length = 1117 |
| >gnl|CDD|222797 PHA00452, PHA00452, T3/T7-like RNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|216207 pfam00940, RNA_pol, DNA-dependent RNA polymerase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| KOG1038 | 1088 | consensus Mitochondrial/chloroplast DNA-directed R | 100.0 | |
| PHA00452 | 807 | T3/T7-like RNA polymerase | 100.0 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 100.0 | |
| PF00940 | 405 | RNA_pol: DNA-dependent RNA polymerase; InterPro: I | 100.0 | |
| PF14700 | 318 | RPOL_N: DNA-directed RNA polymerase N-terminal; PD | 100.0 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 89.42 |
| >KOG1038 consensus Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-206 Score=1744.11 Aligned_cols=827 Identities=56% Similarity=0.937 Sum_probs=737.5
Q ss_pred Chhhhhhhh------hcccccc-CCC----C----Cccccccccc---ccc-cccccccCCCCCCccccccccccccccc
Q 003002 1 MWRNLARQS------STRNFKF-SPS----K----VSQTTNFLKK---ITS-LETQTLLDSSCPLLGFRRTSFLSSQKSN 61 (858)
Q Consensus 1 ~~~~~~~~~------~~~~~~~-~~~----~----~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (858)
||+|+..++ .++.... +.+ + ++.-.++|+- ... |.... ..++++..|+++..+++-.|
T Consensus 89 ~~~~~l~~s~~~~t~~~~~~~~l~~~s~t~~l~~~~~~i~~~~S~~~~~lt~~~~~~-~~~p~~~~~~~~~~~l~~~n-- 165 (1088)
T KOG1038|consen 89 MWRNLLLKSFQNETMALRRHAALNPSSTTLGLLDPVEAISGIFSSLAKVLTTLRHKL-LVSPEHVRGIRQLLGLNNIN-- 165 (1088)
T ss_pred HhhhhHHHHhhhhhHHHHhhccCCchhhcccccchhhcchhhhhhhhhhhHHHhccc-ccCchhhhhhHHhhccchhh--
Confidence 799999998 5555443 222 1 1111134442 222 22222 35677788888888777666
Q ss_pred cCCCCCccCCCCcCccccccccChhhhhcc---ccccCchHHHHHHHHHHHhhcccc-----cccccccccccccccCCC
Q 003002 62 LGQSNFTQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI-----LDSSSMLDKQPKKKGTGM 133 (858)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 133 (858)
+|.+...+.+| ..+||+-+++..-+ +.+++.-+++.+++++|.++.... ......++...+.+..++
T Consensus 166 ----sF~~~~~~l~G-~~~g~s~a~e~~~~~~~~~~s~~~~~~~~~~~~m~ke~~~~~~~~~~~~~~~~~~~lk~v~k~~ 240 (1088)
T KOG1038|consen 166 ----SFPHSSEVLSG-LIKGSSLAGESENPTDQEGDSSNKQEINELVTKMEKEGNSLNQISSKFLEESRDLPLKAVRKGF 240 (1088)
T ss_pred ----cccchhhhhhc-ccccchHHHHHhCcccccccccchhhHHHHHhHhhhhhhhhhHHHHHHHHHHhcccHHHHHHhc
Confidence 45566555556 66788444455444 344555778999999999988431 112222334445677788
Q ss_pred Chh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhhc--cCcc
Q 003002 134 GTA-KYYMLKRRQIKIETEAWEQAAKEYQ-DLLADMCEQKLAPNLPY-VKSLFLGWFEPLRDAIAKDQATAQDK--WKHM 208 (858)
Q Consensus 134 ~~~-~~~~l~eRQ~~lE~~~~~~a~~~~~-~~~~~~~~~g~a~~~~~-~~~ll~~w~~~L~~~I~~e~~~~~~~--~~r~ 208 (858)
+.. +|-.+.+||..+|+++|++|+++|+ ++..+||+..+++++|| +++++++||++|+++|++|++.++.. +.|.
T Consensus 241 ~~~~d~~~l~~Rq~~~e~~~~e~a~e~~k~el~~~~c~~~l~~~lp~~lk~lf~~W~~~l~~ai~ee~n~~r~~~~~~r~ 320 (1088)
T KOG1038|consen 241 GDFKDFFNLDRRQVKLETEAWERAAEEWKIELESDMCEGSLAPNLPYNLKSLFLGWFKPLRDAIKEEINLLRALVRKGRL 320 (1088)
T ss_pred cchHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 877 8999999999999999999999999 88899999999999999 99999999999999999999999876 8899
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHHHHHHHHhHHHHhhhhhccCCCCCCCCCCCCCC
Q 003002 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286 (858)
Q Consensus 209 ~y~p~L~~l~~e~lA~Iti~~~l~~~~~~~--~~~~~~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~ 286 (858)
.|+|||++||++++|+|||+++|+++++|+ +++++++++.+||++||+|+|++.+.++..|++.. +
T Consensus 321 ~Y~p~L~lL~a~k~aviti~el~~ll~tg~~~~~~~v~~aa~~~G~aveqe~ri~~~lq~~~k~~~~----~-------- 388 (1088)
T KOG1038|consen 321 NYAPFLKLLDADKMAVITIHELMGLLMTGGETGGVRVVQAAKSLGRAVEQEFRIEQFLQRKTKNKAG----D-------- 388 (1088)
T ss_pred ccchHHHhcChhhHHHHHHHHHHhhhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----h--------
Confidence 999999999999999999999999999987 89999999999999999999999998875432221 0
Q ss_pred ChHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCCCCCCCCCccCc
Q 003002 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366 (858)
Q Consensus 287 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~kvG~~Li~~l~~~~~i~~~~~~~~~~~~~~~pa 366 (858)
.....++....++.++.++++.++.+....+..+....+|+..++++||++|+++||++++|+++.++..++.++..||
T Consensus 389 -~~~~~ke~~~~~~~v~~l~~~~k~~~~~~~~~~~~~~~pWp~~v~~kvGs~L~~lL~~~aki~~~~~~~~~~~~~~~pa 467 (1088)
T KOG1038|consen 389 -SYCELKELGKSRKEVRQLVQNLKLSQRLSGPESHLSEKPWPSAVQAKVGSRLIELLMQVAKIQVPADQPDTKLPDERPA 467 (1088)
T ss_pred -HHHHHHHhhcccHHHHHHHHHHHHHHHhcccccccccCCccHHHHHHHHHHHHHHHHHHhcCCCcccCcCcCccccchh
Confidence 1222355667788899999888888887777766778899999999999999999999999999999998889999999
Q ss_pred eeEEeeecccccCCCeEEEEEEeCHHHHHHHHhccccccCCCCCeeeCCcCcccCCCccccccCcceeecCchhhHHHH-
Q 003002 367 FVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET- 445 (858)
Q Consensus 367 F~h~~~~~~~~~~~~k~~gvi~~~~~~~~~l~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~R~~~~~~q~~~- 445 (858)
|.|.|+ +++..+.+++||+|+|||.+...|++.+.++.++++||||||+||+++++||||++|+++||++++++|..+
T Consensus 468 f~h~f~-~~n~~~~~~~~g~ie~~pll~r~leks~~~~~~~~vPMLvpPkpWt~~~~Ggyl~~~s~lmRt~g~~~Q~~~l 546 (1088)
T KOG1038|consen 468 FVHTFQ-VTNGQKGGRKYGVIECHPLLSRGLEKSALHFVPPLVPMLVPPKPWTGYDSGGYLFLPSYLMRTHGAKEQVDYL 546 (1088)
T ss_pred hhhhee-eecccccceeeeeeecCHHHHHHhhhhhccccccccccccCCCCCCCCCCCceEecchhhhhcCCcHHHHHHH
Confidence 999999 444444588999999999999999999989999999999999999999999999999999999999999885
Q ss_pred HHcCCCCChhhHHHHHHhhcCcccEechHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHH
Q 003002 446 IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP-NTDDETEIKKWKWKVKTAKK 524 (858)
Q Consensus 446 l~~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~~g~~i~~l~~~~~~p~P~~p-~~~d~~~~~~wk~~~~~~~~ 524 (858)
+++.+.+++++||+|||.||+||||||++||||+.++|++||.+.++|++.+.|+|++| ..+|+.+++.|+++.+...+
T Consensus 547 lkas~~~~l~~v~daL~~LG~t~WrVN~rvldvV~riw~~Gg~~~~~v~r~~~~lP~~P~~s~dp~~~~~wk~e~k~~~k 626 (1088)
T KOG1038|consen 547 LKASPPGQLDPVFDALDTLGNTKWRVNRRVLDVVIRIWQNGGCFLLIVPREDVPLPPKPTLSEDPAELKAWKWEVKKAQK 626 (1088)
T ss_pred HhcCChhhhHHHHHHHHHhcCCCeeecchHHHHHHHHHhcCCCccCCCCCCCCCCCCCCCCCcChHHHHHhHHHHHHHHH
Confidence 55667889999999999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred HHhHhhhhhhhHHHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCCcchhhhhhccccCccCccchhHHHHHHHH
Q 003002 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604 (858)
Q Consensus 525 ~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLG~~Gl~WLkIhlA 604 (858)
.++++||+|||++|+|+||++|+|+ .||||||||||||+||+||||||.|||+|||||+||+|||||++||+|||||+|
T Consensus 627 ~~~e~HS~RCD~~ykLsvAr~~~de-~Fy~PHNmDFRGRaYP~~PHlNHLgsDlcRglLeF~~GkPLG~sGL~WLKIHla 705 (1088)
T KOG1038|consen 627 VNRERHSLRCDAEYKLSVARKMKDE-EFYYPHNMDFRGRAYPLPPHLNHLGSDLCRGLLEFAEGKPLGPSGLRWLKIHLA 705 (1088)
T ss_pred hhhhhhhhhhhHHHHHHHHHHhccC-eeecCcccCcCCccCCCCchhcccchHHHHHHHHHhcCCcCCccchhHHHHHHH
Confidence 9999999999999999999999998 599999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHhhHHHHHHhccCCcCcchhhhcCCchHHHHHHHHHHHHhhcCCCCCCccccccccccCCC
Q 003002 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSC 684 (858)
Q Consensus 605 N~~G~G~DK~s~~eRi~wv~~n~~~I~~sA~~Pl~~~~wW~~Ad~P~QfLA~C~El~~a~~s~~P~~y~S~lPVhqDGSC 684 (858)
|+|| |+||+|+++|++|+++|+++|+|||++||+|++||++|||||||||+||||++|++++||+.|+||+||||||||
T Consensus 706 NL~~-g~~kl~~~~RlAF~E~hl~DI~DSAd~PLtG~rWW~~AedPfQ~LA~C~elaea~RspdPeayiSH~PIHQDGSC 784 (1088)
T KOG1038|consen 706 NLYA-GVDKLSLRDRLAFTEEHLDDIFDSADRPLTGRRWWLKAEDPFQCLAACMELAEALRSPDPEAYISHIPIHQDGSC 784 (1088)
T ss_pred HHhc-ccccccHHHHHHHHHHHHHHHhhcccCCCcccchhhcCCChHHHHHHHHHHHHHHcCCCHHHHHhcCCcccCCCc
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhCCcccccccccCCCCCCcchhHHHHHHHHHHHHhhhcCCCCCCcchHHHHHhhccCccccccceeeeeec
Q 003002 685 NGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVY 764 (858)
Q Consensus 685 NGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~V~~~l~~da~~~~~~~~~~~~a~~l~~~i~RKvVKqtVMT~vY 764 (858)
||||||||||||..||++|||+|||+|||||++||..|.+.+++||++|+ .+|++|.+.||||||||||||+||
T Consensus 785 NGLQHYAALGrD~~GA~~VNLvpsdkPqDVYs~VA~~V~~~~k~DAe~g~------e~Ak~L~~~V~RKvVKQTVMT~VY 858 (1088)
T KOG1038|consen 785 NGLQHYAALGRDSEGAAAVNLVPSDKPQDVYSAVAARVEKIMKQDAEKGP------EVAKILKDQVTRKVVKQTVMTSVY 858 (1088)
T ss_pred chHHHHHHhcCccccchhccccCCCCchhHHHHHHHHHHHHHHHhhhcCh------HHHHHHHHHHhHHHhhhheeeeee
Confidence 99999999999999999999999999999999999999999999999986 699999999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhccCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCeE
Q 003002 765 GVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPV 844 (858)
Q Consensus 765 GvT~~Ga~~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~WL~~~a~~i~~~~~pV~WtTPlGlpV 844 (858)
|||++|||+||.++|++++.++|+.++|.+|||++++||+||+|||.+|++||+||++||++|+++++||+||||+||||
T Consensus 859 GVTyvGAR~QI~krL~e~~~f~d~~~v~~as~Yltk~tf~aLrEmF~~araIq~WlgecAklIs~~~~~V~WtTPLGLPV 938 (1088)
T KOG1038|consen 859 GVTYVGARLQIKKRLKEIDDFPDEKEVFDASCYLTKKTFEALREMFTAARAIQDWLGECAKLISSENSPVEWTTPLGLPV 938 (1088)
T ss_pred eeeEecHHHHHHHHhhhccCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEecCCCCcc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCceeee
Q 003002 845 VQPYHQLGRHLVM 857 (858)
Q Consensus 845 vQ~Y~k~~~~~v~ 857 (858)
|||||+.++++|-
T Consensus 939 VQPYr~~~~~qir 951 (1088)
T KOG1038|consen 939 VQPYRQEKKKQIR 951 (1088)
T ss_pred cchhhhhhhhccc
Confidence 9999999999873
|
|
| >PHA00452 T3/T7-like RNA polymerase | Back alignment and domain information |
|---|
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
| >PF00940 RNA_pol: DNA-dependent RNA polymerase; InterPro: IPR002092 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PF14700 RPOL_N: DNA-directed RNA polymerase N-terminal; PDB: 3SPA_A 1CEZ_A 1H38_B 1S77_D 1QLN_A 1S0V_D 3E2E_A 2PI4_A 3E3J_B 1S76_D | Back alignment and domain information |
|---|
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 858 | ||||
| 3spa_A | 1134 | Crystal Structure Of Human Mitochondrial Rna Polyme | 1e-103 | ||
| 4rnp_A | 883 | Bacteriophage T7 Rna Polymerase, High Salt Crystal | 1e-56 | ||
| 2pi4_A | 878 | T7rnap Complexed With A Phi10 Protein And Initiatin | 1e-56 | ||
| 3e2e_A | 889 | Crystal Structure Of An Intermediate Complex Of T7 | 2e-56 | ||
| 1aro_P | 883 | T7 Rna Polymerase Complexed With T7 Lysozyme Length | 3e-56 |
| >pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase Length = 1134 | Back alignment and structure |
|
| >pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form, Low Temperature Data, Alpha-Carbons Only Length = 883 | Back alignment and structure |
| >pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps. Length = 878 | Back alignment and structure |
| >pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap And 7nt Of Rna Length = 889 | Back alignment and structure |
| >pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme Length = 883 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 468 bits (1205), Expect = e-149
Identities = 230/758 (30%), Positives = 360/758 (47%), Gaps = 50/758 (6%)
Query: 114 SILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLA 173
+L D + + L +Q+ +E A + E K A
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHME-LASRVCVVSVEKPTLPSKEVKHA 334
Query: 174 PNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWK--HMTYAPYFNNLPADMMAVITMHKLV 231
+K+L W + L A+ + + + + + P+ L + + + L
Sbjct: 335 RK--TLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQ 392
Query: 232 GLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPE 289
L + +A + R+ ++ +
Sbjct: 393 ALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN-----------------HYR 435
Query: 290 KLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI 349
K + + + +Q + + + +PW +++G L ++L++ +
Sbjct: 436 KYLCLLASDAEVPEPCLPRQYWEAL--GAPEALREQPWPLPVQMELGKLLAEMLVQATQM 493
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--- 406
+D+ + P H ++ G+++ P + LEK +
Sbjct: 494 PCSLDK-PHRSSRLVPVLYHVYSFR-----NVQQIGILKPHPAYVQLLEKAAEPTLTFEA 547
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLG 465
+PML PPL W + G P+ +MRT GA Q +E ++ P + L AL LG
Sbjct: 548 VDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLG 607
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLV-----DQEDVPLPEKPNTDDETEIKKWKWKVK 520
+ WRVN R+L ++ +++ + GC V + P P++ + + ++
Sbjct: 608 NCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELA 667
Query: 521 TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
+K E HS R + +LS+A+ ++D F+ PHN+DFRGR YP P+ NHLGSD+ R
Sbjct: 668 HCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVAR 726
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+LEF +G PLG GL WLKIHL NL G + R+AF E +DDI DSAD+PL G
Sbjct: 727 ALLEFAQGRPLGPHGLDWLKIHLVNLT-GLKKREPLRKRLAFAEEVMDDILDSADQPLTG 785
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGA 700
R+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH+PVH DGSCNGLQHYAALGRD +GA
Sbjct: 786 RKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGA 845
Query: 701 AAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVM 760
A+VNL D P DVYSG+AA+V R DA + A++L + RK+VKQTVM
Sbjct: 846 ASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGM------RVAQVLEGFITRKVVKQTVM 899
Query: 761 TSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWL 820
T VYGVT G R QI+KRL+E + ++ A+ Y + +L EMF R+I WL
Sbjct: 900 TVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQEMFSGTRAIQHWL 958
Query: 821 GECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLVMF 858
E A++I+ V W TPLG+PV+QPY + +
Sbjct: 959 TESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIG 996
|
| >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A Length = 883 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A Length = 1118 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| 1msw_D | 883 | DNA-directed RNA polymerase, bacteriophage T7 RNA; | 100.0 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 100.0 | |
| 3q23_A | 1118 | Virion RNA polymerase; protein-DNA complex; HET: D | 97.76 |
| >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-167 Score=1494.78 Aligned_cols=670 Identities=28% Similarity=0.470 Sum_probs=575.9
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-hccCccccccc
Q 003002 136 AKYY-MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ-DKWKHMTYAPY 213 (858)
Q Consensus 136 ~~~~-~l~eRQ~~lE~~~~~~a~~~~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~-~~~~r~~y~p~ 213 (858)
..|+ .|++||++||++++++|++||++.+++++++|+++++|++++++.+|+++|+++|+++++..+ +.+.++.|+||
T Consensus 26 ~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~~~~~~ 105 (883)
T 1msw_D 26 DHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQF 105 (883)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 3455 568999999999999999999999999999999999999999999999999999999998776 35668999999
Q ss_pred cccCCchhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhhccCCCCCCCCCCCCCCChHHhHH
Q 003002 214 FNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIK 293 (858)
Q Consensus 214 L~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~~~~ 293 (858)
|+.|+||++|+|||+++|+++++ ++++++++++.+||++||+|++++.+.++.++++.. +
T Consensus 106 L~~l~~e~lA~iti~~~l~~~~~-~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~-------------------~ 165 (883)
T 1msw_D 106 LQEIKPEAVAYITIKTTLACLTS-ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKK-------------------N 165 (883)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHH-CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHH-------------------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------------H
Confidence 99999999999999999999987 467899999999999999999999988776543321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hC----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCCccCce
Q 003002 294 EQEKLKKRVTSLIKKQKLQQVRGIV-KG----HVDSKPWGQDALVKVGCRLIQLLMET-AYIQPPVDQLGDSPPDIRPAF 367 (858)
Q Consensus 294 ~~~~~r~~~~~~~~~~~~~~~~~~~-~~----~~~~~~W~~~~~~kvG~~Li~~l~~~-~~i~~~~~~~~~~~~~~~paF 367 (858)
..+.++++.+...++...+.+.... .. ..++.+|+..++++||++|+++|+++ +.|+++..
T Consensus 166 ~~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~------------- 232 (883)
T 1msw_D 166 VEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ------------- 232 (883)
T ss_dssp TSHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC-------------
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceecc-------------
Confidence 1233344443334443334433321 21 36689999999999999999999995 66644221
Q ss_pred eEEeeecccccC-CCeEEEEEEeCHHHHHHHHhcc---ccccCCCCCeeeCCcCcccCCCcccccc---CcceeecCchh
Q 003002 368 VHTLKSFTKEAL-KGRRYGVIECDPLVRKGLEKTG---RHMIIPYMPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGAR 440 (858)
Q Consensus 368 ~h~~~~~~~~~~-~~k~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYl~~---~~~~~R~~~~~ 440 (858)
..+ +++++|+|++||.+++.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|++..
T Consensus 233 ---------~~~~~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~~- 302 (883)
T 1msw_D 233 ---------NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSK- 302 (883)
T ss_dssp -----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSST-
T ss_pred ---------ccCCCCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccCH-
Confidence 112 2578899999999999997542 3355569999999999999999999974 3456776532
Q ss_pred hHHHHHHcCCCCChhhHHHHHHhhcCcccEechHHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHH
Q 003002 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPLPEKPNTDD--ETEIKKWKW 517 (858)
Q Consensus 441 ~q~~~l~~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~~~d--~~~~~~wk~ 517 (858)
.++++..+++++.||++||+||+|||+||++||+||+++|+ +|+++++||+..+.|+|++|++.+ ++++++|++
T Consensus 303 ---~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~k~ 379 (883)
T 1msw_D 303 ---KALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKR 379 (883)
T ss_dssp ---THHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTH
T ss_pred ---HHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHHHhhcCCcccCCCCcCcCCCCCCCCccccCHHHHHHHHH
Confidence 44566677899999999999999999999999999999999 999999999998899999987543 678899999
Q ss_pred HHHHHHHHHhHhhhhhhhHHHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCCcchhhhhhccccCccCccchhH
Q 003002 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597 (858)
Q Consensus 518 ~~~~~~~~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLG~~Gl~ 597 (858)
.++.+++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++||+
T Consensus 380 ~~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~Gl~ 458 (883)
T 1msw_D 380 AAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYY 458 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecccCCCCcCCCCC-CCCCCcchHHHHHHHhccCCccChhHHH
Confidence 999999999999999999999999999999988999999999999999995 9999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHhhHHHHHHhccCCcCcchhhhcCCchHHHHHHHHHHHHhhcCCCCCCcccccc
Q 003002 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIP 677 (858)
Q Consensus 598 WLkIhlAN~~G~G~DK~s~~eRi~wv~~n~~~I~~sA~~Pl~~~~wW~~Ad~P~QfLA~C~El~~a~~s~~P~~y~S~lP 677 (858)
|||||+||+| |+||+||+||++||++|+++|++||+|||+ .+||++||+||||||+||||++|+++|+ +|+||||
T Consensus 459 WLkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~lP 533 (883)
T 1msw_D 459 WLKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLP 533 (883)
T ss_dssp HHHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEECCC
T ss_pred HHHHHHHHhc--CCCcCCHHHHHHHHHHHHHHHHHHhcCccc-chHHHcCCcHHHHHHHHHHHHHHHhCCC--ccccccc
Confidence 9999999999 899999999999999999999999999999 5899999999999999999999999876 9999999
Q ss_pred ccccCCCchhhHHHHhhCCcccccccccCCCCCCcchhHHHHHHHHHHHHhhhcCCCCC-------Cc------------
Q 003002 678 VHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPAT-------YP------------ 738 (858)
Q Consensus 678 VhqDGSCNGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~V~~~l~~da~~~~~~-------~~------------ 738 (858)
|||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|+.++.+. .+
T Consensus 534 VhqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~~~ 613 (883)
T 1msw_D 534 LAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGT 613 (883)
T ss_dssp EEEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCH
T ss_pred cccCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhcccch
Confidence 99999999999999999999999999999999999999999999999999998775321 00
Q ss_pred chHHHHHhhccCccccccceeeeeecccchhhHHHHHHHHHhhccCCCCchhh----hhhhhhHHHHHHHHHHHHHHHHH
Q 003002 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKL----FGAACYAAKTTLTALGEMFEAAR 814 (858)
Q Consensus 739 ~~~~a~~l~~~i~RKvVKqtVMT~vYGvT~~Ga~~qI~~~L~~~g~~~d~~~~----~~~a~yla~~i~~ai~e~f~~A~ 814 (858)
....+++|.++|+||+|||||||+|||||++|+++||.++|++.++..++... ..+|+|+|++||+||+++|++|+
T Consensus 614 ~~l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~ 693 (883)
T 1msw_D 614 KALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAV 693 (883)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHhcCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11246788999999999999999999999999999999999875432211122 37899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC------------CCeEEEEcCCCCeEeeeccCCCceeee
Q 003002 815 SIMSWLGECAKVIASE------------NQAVRWTTPLGLPVVQPYHQLGRHLVM 857 (858)
Q Consensus 815 ~im~WL~~~a~~i~~~------------~~pV~WtTPlGlpVvQ~Y~k~~~~~v~ 857 (858)
.||+||++||++|+++ +.||.||||+||||+|||++.++++|.
T Consensus 694 ~im~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~ 748 (883)
T 1msw_D 694 EAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLN 748 (883)
T ss_dssp HHHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEE
T ss_pred HHHHHHHHHHHHHHhhcccccccccccCCCeEEEECCCCCEEEEEecCCCceEEE
Confidence 9999999999999998 999999999999999999999998874
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 858 | ||||
| d1mswd_ | 882 | e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [ | 0.0 |
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} Length = 882 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Score = 557 bits (1437), Expect = 0.0
Identities = 184/760 (24%), Positives = 311/760 (40%), Gaps = 88/760 (11%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L R Q+ +E E++E ++ + + + K L + I
Sbjct: 31 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 90
Query: 201 AQDKW-KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEAR 259
+ K K T + + + +A IT+ + L + V A IG AIE+EAR
Sbjct: 91 VKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASAIGRAIEDEAR 149
Query: 260 IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK 319
K +K ++EQ L KRV + KK +Q V +
Sbjct: 150 FGRIRDLEAKHF-----------------KKNVEEQ--LNKRVGHVYKKAFMQVVEADML 190
Query: 320 -----GHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
G W ++ + VG R I++L+E+ + Q +
Sbjct: 191 SKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPE-- 248
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
EA+ R + P+ + P +VPP W G GG++ +
Sbjct: 249 YAEAIATRAGALAGISPM---------------FQPCVVPPKPWTGITGGGYWANGRRPL 293
Query: 435 RTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG--- 491
++ + + V++A++ +T W++NK++L V + + C
Sbjct: 294 ALVR-THSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIP 352
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
+++E++P+ + + + WK +++ + S+R +E L A K + +
Sbjct: 353 AIEREELPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKA 412
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
++P+N+D+RGR Y N G+D+ +G+L +G P+GK G +WLKIH AN GV
Sbjct: 413 IWFPYNMDWRGRVYA-VSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCA--GV 469
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
DK+ + R+ F E + ++I A PLE WW + PF LA C +
Sbjct: 470 DKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGLS-- 526
Query: 672 TISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADAD 731
+P+ DGSC+G+QH++A+ RD++G AVNL+ + D+Y +A +V EI++ADA
Sbjct: 527 YNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAI 586
Query: 732 KD-------------------PATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGAR 772
A + L V R + K++VMT YG G R
Sbjct: 587 NGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFR 646
Query: 773 DQIKKRLKERCAIEDDSKLFG----AACYAAKTTLTALGEMFEAARSIMSWLGECAKVIA 828
Q+ + + +F AA Y AK ++ AA M+WL AK++A
Sbjct: 647 QQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLA 706
Query: 829 SE------------NQAVRWTTPLGLPVVQPYHQLGRHLV 856
+E AV W TP G PV Q Y + + +
Sbjct: 707 AEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRL 746
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| d1mswd_ | 882 | T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760] | 100.0 |
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Probab=100.00 E-value=2.1e-150 Score=1364.88 Aligned_cols=668 Identities=28% Similarity=0.461 Sum_probs=560.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh-ccCccccccccccCC
Q 003002 140 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-KWKHMTYAPYFNNLP 218 (858)
Q Consensus 140 ~l~eRQ~~lE~~~~~~a~~~~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~~-~~~r~~y~p~L~~l~ 218 (858)
.|++||++||+++++.|++||++.+++++++|.+++++|+++++.+|+++|+++|+++++..+. .|.++.|+|||..|+
T Consensus 30 ~L~~rQ~~LE~ea~~~g~~R~r~~~e~~~~rg~~s~~~~g~~li~~~l~~l~~~I~~~~~~~~~~~G~~~~~~~yL~~l~ 109 (882)
T d1mswd_ 30 RLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIK 109 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHhcCC
Confidence 4888999999999999999999999999999999999999999999999999999998887654 456788999999999
Q ss_pred chhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhhccCCCCCCCCCCCCCCChHHhHHHHHHH
Q 003002 219 ADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL 298 (858)
Q Consensus 219 ~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~IG~aVe~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 298 (858)
||++|+|||+++|++++++ ++.++++++.+||+|||+|++++++.+..++.+.+.. .+.+
T Consensus 110 pe~lA~Itik~~ld~l~~~-~~~~~t~va~~IG~AVE~E~r~~~~~~~~~~~~~k~~-------------------~~~~ 169 (882)
T d1mswd_ 110 PEAVAYITIKTTLACLTSA-DNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNV-------------------EEQL 169 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHC-SCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHT-------------------SHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhh-------------------HHHH
Confidence 9999999999999999874 4578999999999999999999998877654432210 1222
Q ss_pred HHHHHHHHHHHHHHHHH-----hhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCCCCCCCCCccCceeEEeee
Q 003002 299 KKRVTSLIKKQKLQQVR-----GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373 (858)
Q Consensus 299 r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~W~~~~~~kvG~~Li~~l~~~~~i~~~~~~~~~~~~~~~paF~h~~~~ 373 (858)
+++.+...+++..+.+. +.......|.+|+..+++|||++|+++|++++.+.. .....
T Consensus 170 ~k~~~~~~kk~~~~~~~~~~~~~~~~~~~~w~~W~~~~r~kVG~~Lle~l~e~tg~~~-----------------~~~~~ 232 (882)
T d1mswd_ 170 NKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVS-----------------LHRQN 232 (882)
T ss_dssp HHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEE-----------------EECC-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhccccccCccCHHHHHHHHHHHHHHHHHHhCCce-----------------eeccc
Confidence 23333333333322222 111223578999999999999999999999987621 11111
Q ss_pred cccccCCCeEEEEEEeCHHHHHHHHhcc---ccccCCCCCeeeCCcCcccCCCccccccCc---ceeecCchhhHHHHHH
Q 003002 374 FTKEALKGRRYGVIECDPLVRKGLEKTG---RHMIIPYMPMLVPPLNWRGYNRGGHFFLPS---YVMRTHGARQQRETIK 447 (858)
Q Consensus 374 ~~~~~~~~k~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~---~~~R~~~~~~q~~~l~ 447 (858)
....+++.++|.++|++.+.++... ..+.+.+|||||||+||++..+||||+... .++|++.. .++.
T Consensus 233 ---~~~~~k~~~~v~~t~~~~~~l~~~~~~~~~~~P~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~~~~~~~----~~~~ 305 (882)
T d1mswd_ 233 ---AGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSK----KALM 305 (882)
T ss_dssp ----------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSST----THHH
T ss_pred ---cccccCcCcceeecHHHHHHHHhhHhHHHhcCcccccccCCCccCCCCCcCCeeecCCCceeccccccH----hhhh
Confidence 0113667889999999988886542 223344999999999999999999998644 35555432 2334
Q ss_pred cCCCCChhhHHHHHHhhcCcccEechHHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHH
Q 003002 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPLPEKPN--TDDETEIKKWKWKVKTAKK 524 (858)
Q Consensus 448 ~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~--~~d~~~~~~wk~~~~~~~~ 524 (858)
+....+++.+|++||+||+|||+||++||+|++.+|+ .|+.++++|+....+.|++|. +.+++++++|++..+.+++
T Consensus 306 ~~~~~~l~~v~~aLN~LQst~wrIN~~vLdv~~~~~~~~~~~~~~iP~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (882)
T d1mswd_ 306 RYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYR 385 (882)
T ss_dssp HTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHHHHHHHH
T ss_pred hccccchHHHHHHHHHHhcCCeEeCHHHHHHHHHHHhcCCCcccccCcccccccCCcccccccCHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999998 556778898877766776654 3567789999999999999
Q ss_pred HHhHhhhhhhhHHHHHHHHHhccCCCceeeccccCCCCccccCCCCCCCCCcchhhhhhccccCccCccchhHHHHHHHH
Q 003002 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604 (858)
Q Consensus 525 ~~~~~~s~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLG~~Gl~WLkIhlA 604 (858)
.+.+.+|+||+++++|++|++|+|++.||||||+|||||+||+ |+|||||+|+|||||+||+|+|||++|++|||||+|
T Consensus 386 ~~~~~~s~r~~~~~~l~~A~~~~~~~~fy~P~~~DfRGR~Y~~-~~ln~qg~D~~rsLl~Fa~~~~l~~~g~~wL~i~~A 464 (882)
T d1mswd_ 386 KDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGA 464 (882)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEES-SSSCTTSCHHHHHHEEESSCEECHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCCCceeeeeeeecccccccC-CCCCCCccchhhhhhhccCCCcccchhHHHHHHHHH
Confidence 9999999999999999999999998889999999999999997 689999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHhhHHHHHHhccCCcCcchhhhcCCchHHHHHHHHHHHHhhcCCCCCCccccccccccCCC
Q 003002 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSC 684 (858)
Q Consensus 605 N~~G~G~DK~s~~eRi~wv~~n~~~I~~sA~~Pl~~~~wW~~Ad~P~QfLA~C~El~~a~~s~~P~~y~S~lPVhqDGSC 684 (858)
|+| |+||+||+||++||++|++.|+++|+||+++ .||.+||+||||||+|+||++++.+ |+.|+|||||||||||
T Consensus 465 n~~--g~dK~s~~~r~~w~~~~~~~i~~~~~dp~~~-~~w~~a~~p~qfla~c~e~~~~~~~--~~~~~s~lpv~~D~sc 539 (882)
T d1mswd_ 465 NCA--GVDKVPFPERIKFIEENHENIMACAKSPLEN-TWWAEQDSPFCFLAFCFEYAGVQHH--GLSYNCSLPLAFDGSC 539 (882)
T ss_dssp HHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHHH-CGGGGSSSHHHHHHHHHHHHHHHHH--CTTCEECCCEEEECSC
T ss_pred hcc--CcchhhHHHHHHHHHHhHHHHHhhhcCcchh-hhhhhCchhHHHHHHHHHHHHHHhc--CCcccccceeeeccCc
Confidence 999 8999999999999999999999999999975 7999999999999999999999885 4689999999999999
Q ss_pred chhhHHHHhhCCcccccccccCCCCCCcchhHHHHHHHHHHHHhhhcCCCCCC-------------------cchHHHHH
Q 003002 685 NGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATY-------------------PYASCARL 745 (858)
Q Consensus 685 NGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~V~~~l~~da~~~~~~~-------------------~~~~~a~~ 745 (858)
|||||||||+||..||++|||+|+|+|||||+.||+.|.+.+.+|+..+.+.. .....+++
T Consensus 540 nG~Qh~aal~~d~~~a~~vNL~p~~~p~DvY~~va~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (882)
T d1mswd_ 540 SGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQW 619 (882)
T ss_dssp HHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHHHHHHHH
T ss_pred cHHHHHHHHhcCHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccccccccchhhhcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999987654321 12245578
Q ss_pred hhccCccccccceeeeeecccchhhHHHHHHHHHhhccCCC----CchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003002 746 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIE----DDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLG 821 (858)
Q Consensus 746 l~~~i~RKvVKqtVMT~vYGvT~~Ga~~qI~~~L~~~g~~~----d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~WL~ 821 (858)
+..+|+||+|||+|||+|||||++|+++||.++|.+.+... .....+.++.|||++||++|+++|++|+.+|+||+
T Consensus 620 l~~~i~Rk~vK~~vMT~~YG~t~~g~~~qi~~~l~~~~~~~~~~~~~~~~~~~~~yla~~i~~~i~~~~~~a~~~m~wl~ 699 (882)
T d1mswd_ 620 LAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLK 699 (882)
T ss_dssp HTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhcccchhhhccceeeeecccchhhHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88899999999999999999999999999999986653211 11235678999999999999999999999999999
Q ss_pred HHHHHHhc------------CCCeEEEEcCCCCeEeeeccCCCceeee
Q 003002 822 ECAKVIAS------------ENQAVRWTTPLGLPVVQPYHQLGRHLVM 857 (858)
Q Consensus 822 ~~a~~i~~------------~~~pV~WtTPlGlpVvQ~Y~k~~~~~v~ 857 (858)
+||++|++ .+.||+||||+||||+|||++..++.|.
T Consensus 700 ~~a~~i~~~~~~~~~~~~~~~~~pv~W~TP~G~pV~Q~Y~k~~~~~v~ 747 (882)
T d1mswd_ 700 SAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLN 747 (882)
T ss_dssp HHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEE
T ss_pred HHHHHHHHhhhhhhhhHHhcCCCeEEEECCCCCEEEEEecCCCcEEEE
Confidence 99999985 4679999999999999999999998875
|