Citrus Sinensis ID: 003003
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | 2.2.26 [Sep-21-2011] | |||||||
| Q940Y9 | 817 | Putative ion channel POLL | yes | no | 0.855 | 0.898 | 0.711 | 0.0 | |
| Q8VZM7 | 813 | Putative ion channel POLL | no | no | 0.853 | 0.900 | 0.666 | 0.0 | |
| Q75LD5 | 893 | Probable ion channel CAST | no | no | 0.648 | 0.622 | 0.264 | 2e-54 | |
| Q5H8A6 | 853 | Ion channel CASTOR OS=Lot | N/A | no | 0.671 | 0.675 | 0.259 | 2e-53 | |
| Q5N941 | 965 | Probable ion channel POLL | no | no | 0.651 | 0.579 | 0.253 | 2e-50 | |
| Q9LTX4 | 824 | Probable ion channel POLL | no | no | 0.687 | 0.716 | 0.243 | 4e-49 | |
| Q6RHR6 | 882 | Ion channel DMI1 OS=Medic | N/A | no | 0.699 | 0.680 | 0.233 | 3e-47 | |
| Q4VY51 | 894 | Probable ion channel SYM8 | N/A | no | 0.780 | 0.749 | 0.228 | 4e-46 | |
| Q5H8A5 | 917 | Ion channel POLLUX OS=Lot | N/A | no | 0.667 | 0.624 | 0.234 | 8e-46 |
| >sp|Q940Y9|POLL2_ARATH Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/755 (71%), Positives = 618/755 (81%), Gaps = 21/755 (2%)
Query: 104 QLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLK 163
+++IG + Y +FR+ Q KI Q+L P +V G PFAC SNSL P PLK
Sbjct: 84 KVVIGCIPLYAVFRIAQ--------KICQEL-PRLVQNSVGAGLPFACASNSL--PTPLK 132
Query: 164 LDVSLPSLQDVRWNLARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQ 223
LDVS PS QD+RW LAR LYLFN+QLE+N+ TFLV L + C SFV+ GG LFFKFR +
Sbjct: 133 LDVSFPSFQDIRWGLARFLYLFNIQLEKNIGTFLVALMIACVSFVIIGGLLFFKFRKDL- 191
Query: 224 SLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 283
LEDCLWEAWACLISSSTHLKQ+TR+ERVIGF+LAIWGILFYSRLLSTMTEQFR NM KL
Sbjct: 192 PLEDCLWEAWACLISSSTHLKQKTRIERVIGFVLAIWGILFYSRLLSTMTEQFRYNMTKL 251
Query: 284 REGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ 343
REGAQMQVLE+DHII+CG+NSHL FILKQLN YHE +VRLGTATARKQR+LL+SD PRKQ
Sbjct: 252 REGAQMQVLEADHIIICGINSHLPFILKQLNSYHEHAVRLGTATARKQRLLLMSDTPRKQ 311
Query: 344 MDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLS 403
MDKLAE +KD NHIDIL+KSCSL LTKS+ERAAA+ ARAIIILPTKGDRYEVDTDAFLS
Sbjct: 312 MDKLAEAYSKDFNHIDILTKSCSLNLTKSFERAAASMARAIIILPTKGDRYEVDTDAFLS 371
Query: 404 VLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIY 463
VLALQPI KM S+PTIVEVS+PNT +LLKS+SGLKVEPVENV SKLFVQCSRQK LIKIY
Sbjct: 372 VLALQPIQKMESIPTIVEVSSPNTYDLLKSISGLKVEPVENVTSKLFVQCSRQKDLIKIY 431
Query: 464 RHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDK 523
RHLLNY KN+FNL SFPNL G KYRQLR GFQE VVCGL R+GK+ FHPND+E L TDK
Sbjct: 432 RHLLNYSKNVFNLCSFPNLVGTKYRQLRLGFQEVVVCGLLRDGKVNFHPNDNEELMETDK 491
Query: 524 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSK 583
+LFIAP++ KKK L + L+ + +D+ E +RL I RP K
Sbjct: 492 LLFIAPLNWKKKQLLYT---------DMKLENITVPTDTRKQVFEKKRSRLSKIIMRPRK 542
Query: 584 PGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAI 643
SK +D GP E ILLLGWR DVV+MIEE+DNYLGPGS +EILSDV L+DR+R ++I
Sbjct: 543 SLSKGSDSVKGPTESILLLGWRGDVVQMIEEFDNYLGPGSSMEILSDVSLEDRRRVGDSI 602
Query: 644 GHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRA 703
G K+KN+QV HK+GNPLN++TLK TIM +++ ++ G+ +PL+I+VISDR+WLLGDPSRA
Sbjct: 603 GSVKIKNIQVSHKVGNPLNYDTLKQTIMRMKSKYRKGKNIPLTILVISDRDWLLGDPSRA 662
Query: 704 DKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ 763
DKQSAYSLLLAE+ICNKLGVKV NL +EIVDSKLGKQI KPSLT+IAAEE+MSLVTAQ
Sbjct: 663 DKQSAYSLLLAESICNKLGVKVHNLASEIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQ 722
Query: 764 VVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDN 823
V EN+ELNEVWKDIL+A+GDEIYVKD+ LYMKEGENPSF ELSERA LRREVAIGY+K
Sbjct: 723 VAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGG 782
Query: 824 KKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL 858
KK+INPVPK+EPLSL + DSLIVISELEG+QPI L
Sbjct: 783 KKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL 817
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZM7|POLL1_ARATH Putative ion channel POLLUX-like 1 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q75LD5|CASTO_ORYSJ Probable ion channel CASTOR OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5H8A6|CASTO_LOTJA Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5N941|POLLU_ORYSJ Probable ion channel POLLUX OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LTX4|POLLU_ARATH Probable ion channel POLLUX OS=Arabidopsis thaliana GN=At5g49960 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6RHR6|DMI1_MEDTR Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q4VY51|SYM8_PEA Probable ion channel SYM8 OS=Pisum sativum GN=SYM8 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5H8A5|POLLU_LOTJA Ion channel POLLUX OS=Lotus japonicus GN=POLLUX PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | ||||||
| 297737151 | 846 | unnamed protein product [Vitis vinifera] | 0.982 | 0.996 | 0.739 | 0.0 | |
| 225432882 | 729 | PREDICTED: ion channel CASTOR-like [Viti | 0.848 | 0.998 | 0.798 | 0.0 | |
| 356574781 | 850 | PREDICTED: ion channel CASTOR-like [Glyc | 0.954 | 0.963 | 0.718 | 0.0 | |
| 255551967 | 787 | conserved hypothetical protein [Ricinus | 0.847 | 0.923 | 0.798 | 0.0 | |
| 224111074 | 751 | predicted protein [Populus trichocarpa] | 0.857 | 0.980 | 0.764 | 0.0 | |
| 449433285 | 907 | PREDICTED: putative ion channel POLLUX-l | 0.933 | 0.883 | 0.691 | 0.0 | |
| 356533739 | 788 | PREDICTED: probable ion channel CASTOR-l | 0.911 | 0.992 | 0.711 | 0.0 | |
| 449514845 | 902 | PREDICTED: putative ion channel POLLUX-l | 0.872 | 0.830 | 0.724 | 0.0 | |
| 18422366 | 817 | uncharacterized protein [Arabidopsis tha | 0.855 | 0.898 | 0.711 | 0.0 | |
| 297790330 | 808 | hypothetical protein ARALYDRAFT_333107 [ | 0.883 | 0.938 | 0.661 | 0.0 |
| >gi|297737151|emb|CBI26352.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1296 bits (3354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/855 (73%), Positives = 727/855 (85%), Gaps = 12/855 (1%)
Query: 5 QLQSSHPCVLASRFAPPARIHASSSSSSNRKLIPCNLWWFHSLAFKKHDYKINYAEKWEA 64
+LQSS P + P + SSS RK +PC+ WW S A + + ++ K +A
Sbjct: 3 RLQSSPP------WTSPQVSRLNRISSSKRKSVPCDCWWIQSSALPANKFLMHNRGKCKA 56
Query: 65 SSQSIEDKTDSSICMNVVDNSSFKFFRMDKKNTPQGYQAQLMIGSLSSYFLFRLTQMNFI 124
S Q DK+ S +D S+ F+ D KN QGY A+LMIGS +SYFL RLTQ+
Sbjct: 57 SLQRTLDKSYSP---TYLDGSNAGCFKEDLKNGSQGYDAKLMIGS-TSYFLLRLTQLYSA 112
Query: 125 NAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLKLDVSLPSLQDVRWNLARLLYL 184
N +K++Q+L S+V T G PFACMSNSLNKP PL+LDVSLPSLQD++WN +RL+YL
Sbjct: 113 NRLMKMVQNLL-SVVCTFGNGSLPFACMSNSLNKPTPLRLDVSLPSLQDIKWNFSRLIYL 171
Query: 185 FNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLISSSTHLK 244
FN++LERNVAT VVL V CFSFVV GG L FKFRD TQSLEDC WEAWACLISSSTHLK
Sbjct: 172 FNIRLERNVATSFVVLLVACFSFVVIGGLLLFKFRDNTQSLEDCFWEAWACLISSSTHLK 231
Query: 245 QRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLESDHIIVCGVNS 304
QRT + RVIGF+LAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQV+E+DHI++CG+NS
Sbjct: 232 QRTHIGRVIGFVLAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVMEADHIVICGINS 291
Query: 305 HLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKS 364
HL+FILKQLNKYHEF+VRLGTATAR+QRILLLSDLPRKQMDKLA+NIAKDL+HID+L+KS
Sbjct: 292 HLTFILKQLNKYHEFAVRLGTATARRQRILLLSDLPRKQMDKLADNIAKDLSHIDVLTKS 351
Query: 365 CS-LTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVS 423
CS L+LTKS+ERAAA+KARAIIILP GDRYEVDTDAFLSVLALQPI KM SVPTIVEV+
Sbjct: 352 CSSLSLTKSFERAAADKARAIIILPANGDRYEVDTDAFLSVLALQPISKMTSVPTIVEVT 411
Query: 424 NPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLA 483
N T ELLKS+SGLKVEPVENVASKL VQCSRQKGLIKIY+HLLNYRKN+FNL+SFPNLA
Sbjct: 412 NSQTAELLKSISGLKVEPVENVASKLLVQCSRQKGLIKIYKHLLNYRKNVFNLFSFPNLA 471
Query: 484 GIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNV 543
GIKYRQLRRGF+ AVVCGLYRNGKIYFHPNDDE L+ TDK+LF+ P+ GK++P+LA +V
Sbjct: 472 GIKYRQLRRGFEGAVVCGLYRNGKIYFHPNDDEVLRQTDKVLFVGPVPGKREPQLAYPDV 531
Query: 544 ANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLG 603
N Q+L+VLE N ++ YA++L+ R+E I KRP+KPGSKA+D +LGPKER+LL+G
Sbjct: 532 KEETNTIQNLEVLEKNGGASHYALDLIKMRVENIVKRPTKPGSKASDWSLGPKERVLLIG 591
Query: 604 WRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNF 663
WR DVVEMIEEYDNYLGPGSVLEILSDVPLDDR RASN GHGK+KN+QV H++GNP+N+
Sbjct: 592 WRQDVVEMIEEYDNYLGPGSVLEILSDVPLDDRNRASNFAGHGKVKNIQVSHRVGNPMNY 651
Query: 664 ETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGV 723
+TL++TI+NI++SFK GE +PLSIVVISDRE LLGDPSRADK SAYSLLLAENICNKLGV
Sbjct: 652 DTLRETILNIRSSFKKGESVPLSIVVISDRECLLGDPSRADKHSAYSLLLAENICNKLGV 711
Query: 724 KVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGD 783
KVQNLVAEIVDSKLGKQI R +PSLTYIAAEE+M LVTAQV EN+ELNEVWKDILNAEGD
Sbjct: 712 KVQNLVAEIVDSKLGKQITRIRPSLTYIAAEEVMGLVTAQVAENSELNEVWKDILNAEGD 771
Query: 784 EIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTDS 843
EIYVKDI LYMK GENPSF EL+ERAHLR+EVAIGYVK+NKKVINP+PKSEPLSL +TDS
Sbjct: 772 EIYVKDIRLYMKPGENPSFSELAERAHLRQEVAIGYVKNNKKVINPIPKSEPLSLEMTDS 831
Query: 844 LIVISELEGEQPIVL 858
LIVISELEG QPIV+
Sbjct: 832 LIVISELEGAQPIVM 846
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432882|ref|XP_002280086.1| PREDICTED: ion channel CASTOR-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356574781|ref|XP_003555523.1| PREDICTED: ion channel CASTOR-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255551967|ref|XP_002517028.1| conserved hypothetical protein [Ricinus communis] gi|223543663|gb|EEF45191.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224111074|ref|XP_002315738.1| predicted protein [Populus trichocarpa] gi|222864778|gb|EEF01909.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449433285|ref|XP_004134428.1| PREDICTED: putative ion channel POLLUX-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356533739|ref|XP_003535417.1| PREDICTED: probable ion channel CASTOR-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449514845|ref|XP_004164496.1| PREDICTED: putative ion channel POLLUX-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|18422366|ref|NP_568628.1| uncharacterized protein [Arabidopsis thaliana] gi|75163971|sp|Q940Y9.1|POLL2_ARATH RecName: Full=Putative ion channel POLLUX-like 2 gi|15450498|gb|AAK96542.1| AT5g02940/F9G14_250 [Arabidopsis thaliana] gi|16974323|gb|AAL31146.1| AT5g02940/F9G14_250 [Arabidopsis thaliana] gi|332007621|gb|AED95004.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297790330|ref|XP_002863063.1| hypothetical protein ARALYDRAFT_333107 [Arabidopsis lyrata subsp. lyrata] gi|297308871|gb|EFH39322.1| hypothetical protein ARALYDRAFT_333107 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | ||||||
| TAIR|locus:505006671 | 817 | AT5G43745 [Arabidopsis thalian | 0.855 | 0.898 | 0.666 | 3.3e-260 | |
| TAIR|locus:2151276 | 813 | AT5G02940 [Arabidopsis thalian | 0.853 | 0.900 | 0.623 | 4e-241 | |
| TAIR|locus:2158799 | 824 | AT5G49960 [Arabidopsis thalian | 0.343 | 0.358 | 0.233 | 9.2e-32 | |
| UNIPROTKB|Q4VY51 | 894 | SYM8 "Probable ion channel SYM | 0.344 | 0.331 | 0.222 | 2.9e-30 |
| TAIR|locus:505006671 AT5G43745 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2504 (886.5 bits), Expect = 3.3e-260, P = 3.3e-260
Identities = 503/755 (66%), Positives = 582/755 (77%)
Query: 104 QLMIGSLSSYFLFRLTQMNFINAFVKIIQDLFPSMVWTLGATGSPFACMSNSLNKPMPLK 163
+++IG + Y +FR+ Q KI Q+L P +V G PFAC SNSL P PLK
Sbjct: 84 KVVIGCIPLYAVFRIAQ--------KICQEL-PRLVQNSVGAGLPFACASNSL--PTPLK 132
Query: 164 LDVSLPSLQDVRWNLARLLYLFNVQLERNVATXXXXXXXXXXXXXXXXXXXXXXXRDETQ 223
LDVS PS QD+RW LAR LYLFN+QLE+N+ T R +
Sbjct: 133 LDVSFPSFQDIRWGLARFLYLFNIQLEKNIGTFLVALMIACVSFVIIGGLLFFKFRKDLP 192
Query: 224 SLEDCLWEAWACLISSSTHLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKL 283
LEDCLWEAWACLISSSTHLKQ+TR+ERVIGF+LAIWGILFYSRLLSTMTEQFR NM KL
Sbjct: 193 -LEDCLWEAWACLISSSTHLKQKTRIERVIGFVLAIWGILFYSRLLSTMTEQFRYNMTKL 251
Query: 284 REGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQ 343
REGAQMQVLE+DHII+CG+NSHL FILKQLN YHE +VRLGTATARKQR+LL+SD PRKQ
Sbjct: 252 REGAQMQVLEADHIIICGINSHLPFILKQLNSYHEHAVRLGTATARKQRLLLMSDTPRKQ 311
Query: 344 MDKLAENIAKDLNHIDIXXXXXXXXXXXXYEXXXXXXXXXXXXLPTKGDRYEVDTDAFLS 403
MDKLAE +KD NHIDI +E LPTKGDRYEVDTDAFLS
Sbjct: 312 MDKLAEAYSKDFNHIDILTKSCSLNLTKSFERAAASMARAIIILPTKGDRYEVDTDAFLS 371
Query: 404 VLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIY 463
VLALQPI KM S+PTIVEVS+PNT +LLKS+SGLKVEPVENV SKLFVQCSRQK LIKIY
Sbjct: 372 VLALQPIQKMESIPTIVEVSSPNTYDLLKSISGLKVEPVENVTSKLFVQCSRQKDLIKIY 431
Query: 464 RHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVCGLYRNGKIYFHPNDDETLQPTDK 523
RHLLNY KN+FNL SFPNL G KYRQLR GFQE VVCGL R+GK+ FHPND+E L TDK
Sbjct: 432 RHLLNYSKNVFNLCSFPNLVGTKYRQLRLGFQEVVVCGLLRDGKVNFHPNDNEELMETDK 491
Query: 524 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSK 583
+LFIAP++ KKK L + M + +++ V +D+ E +RL I RP K
Sbjct: 492 LLFIAPLNWKKKQLLYTD-----MKL-ENITV---PTDTRKQVFEKKRSRLSKIIMRPRK 542
Query: 584 PGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAI 643
SK +D GP E ILLLGWR DVV+MIEE+DNYLGPGS +EILSDV L+DR+R ++I
Sbjct: 543 SLSKGSDSVKGPTESILLLGWRGDVVQMIEEFDNYLGPGSSMEILSDVSLEDRRRVGDSI 602
Query: 644 GHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRA 703
G K+KN+QV HK+GNPLN++TLK TIM +++ ++ G+ +PL+I+VISDR+WLLGDPSRA
Sbjct: 603 GSVKIKNIQVSHKVGNPLNYDTLKQTIMRMKSKYRKGKNIPLTILVISDRDWLLGDPSRA 662
Query: 704 DKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ 763
DKQSAYSLLLAE+ICNKLGVKV NL +EIVDSKLGKQI KPSLT+IAAEE+MSLVTAQ
Sbjct: 663 DKQSAYSLLLAESICNKLGVKVHNLASEIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQ 722
Query: 764 VVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDN 823
V EN+ELNEVWKDIL+A+GDEIYVKD+ LYMKEGENPSF ELSERA LRREVAIGY+K
Sbjct: 723 VAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGG 782
Query: 824 KKVINPVPKSEPLSLTLTDSLIVISELEGEQPIVL 858
KK+INPVPK+EPLSL + DSLIVISELEG+QPI L
Sbjct: 783 KKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL 817
|
|
| TAIR|locus:2151276 AT5G02940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2158799 AT5G49960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q4VY51 SYM8 "Probable ion channel SYM8" [Pisum sativum (taxid:3888)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q940Y9 | POLL2_ARATH | No assigned EC number | 0.7112 | 0.8554 | 0.8984 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 858 | |||
| pfam06241 | 208 | pfam06241, DUF1012, Protein of unknown function (D | 7e-88 |
| >gnl|CDD|114933 pfam06241, DUF1012, Protein of unknown function (DUF1012) | Back alignment and domain information |
|---|
Score = 277 bits (709), Expect = 7e-88
Identities = 139/215 (64%), Positives = 159/215 (73%), Gaps = 7/215 (3%)
Query: 381 ARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVE 440
ARAIIILPTKGDRYEVDTDAFLSVLAL+PI KM S+PTIVEVS+PN +LLKS+SGLKVE
Sbjct: 1 ARAIIILPTKGDRYEVDTDAFLSVLALEPIQKMESIPTIVEVSSPNMYDLLKSISGLKVE 60
Query: 441 PVENVASKLFVQCSRQKGLIKIYRHLLNYRKNIFNLWSFPNLAGIKYRQLRRGFQEAVVC 500
PVEN SKLFVQCSRQK LIKIYRHLLNY KN+FNL SFPNL G+KYRQLR GFQE VVC
Sbjct: 61 PVENSTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNLCSFPNLTGMKYRQLRLGFQEVVVC 120
Query: 501 GLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNS 560
G+ R+GK+ FHPNDDE L TDK+LFIAP++ KKK L + + + +
Sbjct: 121 GILRDGKVNFHPNDDEELMETDKLLFIAPLNWKKKDFLYTDMKLENITV-------DETD 173
Query: 561 DSTSYAIELVNARLELIAKRPSKPGSKATDGNLGP 595
D+ E +RLE I RP K SK +D GP
Sbjct: 174 DTRKQVFEEKKSRLEKIIMRPRKSLSKGSDSFKGP 208
|
Family of uncharacterized proteins found in both eukaryotes and bacteria. Length = 208 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 100.0 | |
| PF06241 | 206 | DUF1012: Protein of unknown function (DUF1012); In | 100.0 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 99.94 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 99.94 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 99.89 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 99.84 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 99.81 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 99.61 | |
| PF06241 | 206 | DUF1012: Protein of unknown function (DUF1012); In | 99.56 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 99.51 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 99.49 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 99.45 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 99.44 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 99.34 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 99.16 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 99.02 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 98.88 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 98.82 | |
| COG0490 | 162 | Putative regulatory, ligand-binding protein relate | 98.54 | |
| COG1226 | 212 | Kch Kef-type K+ transport systems, predicted NAD-b | 98.54 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.34 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 98.12 | |
| PF02080 | 71 | TrkA_C: TrkA-C domain; InterPro: IPR006037 The reg | 97.94 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 97.88 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 97.81 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 97.67 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 97.64 | |
| COG1226 | 212 | Kch Kef-type K+ transport systems, predicted NAD-b | 97.61 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 97.51 | |
| PF03493 | 101 | BK_channel_a: Calcium-activated BK potassium chann | 97.51 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 97.49 | |
| COG3273 | 204 | Uncharacterized conserved protein [Function unknow | 97.34 | |
| COG3400 | 471 | Uncharacterized protein conserved in bacteria [Fun | 96.99 | |
| COG0490 | 162 | Putative regulatory, ligand-binding protein relate | 96.73 | |
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 96.45 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 96.26 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 95.66 | |
| TIGR03802 | 562 | Asp_Ala_antiprt aspartate-alanine antiporter. All | 95.57 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 95.28 | |
| PRK03818 | 552 | putative transporter; Validated | 95.08 | |
| COG3400 | 471 | Uncharacterized protein conserved in bacteria [Fun | 94.63 | |
| TIGR03802 | 562 | Asp_Ala_antiprt aspartate-alanine antiporter. All | 94.56 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 94.52 | |
| PRK03818 | 552 | putative transporter; Validated | 94.51 | |
| PRK04972 | 558 | putative transporter; Provisional | 94.44 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 93.65 | |
| PF02080 | 71 | TrkA_C: TrkA-C domain; InterPro: IPR006037 The reg | 93.58 | |
| PRK04972 | 558 | putative transporter; Provisional | 92.98 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 92.97 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 92.68 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 92.62 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 91.43 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 90.74 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 89.61 | |
| COG3263 | 574 | NhaP-type Na+/H+ and K+/H+ antiporters with a uniq | 89.5 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 89.38 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 88.84 | |
| COG3273 | 204 | Uncharacterized conserved protein [Function unknow | 88.72 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 87.76 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 86.89 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 86.45 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 83.9 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 83.78 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 83.62 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 82.0 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 81.5 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 81.36 | |
| KOG1053 | 1258 | consensus Glutamate-gated NMDA-type ion channel re | 80.57 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 80.5 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 80.5 |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=327.01 Aligned_cols=425 Identities=15% Similarity=0.208 Sum_probs=315.3
Q ss_pred eEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHh
Q 003003 296 HIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYER 375 (858)
Q Consensus 296 HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~r 375 (858)
||+|||+|..|..++++|...+. .++++ +.+++..+.+.+.. +.+ ++.||+++.++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-------------~v~vi-d~~~~~~~~~~~~~-----~~~--~~~gd~~~~~~l~~ 60 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-------------DVTVI-DTDEERLRRLQDRL-----DVR--TVVGNGSSPDVLRE 60 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-------------cEEEE-ECCHHHHHHHHhhc-----CEE--EEEeCCCCHHHHHH
Confidence 89999999999999999987654 56665 77777777654311 334 44799999999999
Q ss_pred cCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCccc---HHHH--HhcCCCeEEehHHHHHHHH
Q 003003 376 AAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNT---CELL--KSLSGLKVEPVENVASKLF 450 (858)
Q Consensus 376 A~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~---~~~l--~~ag~d~Vi~~~~i~~~ll 450 (858)
+++++|+.+++++++ |..++..++.++.++ +..++|+++.++++ ..++ +.+|++.|+.|+.+++..|
T Consensus 61 ~~~~~a~~vi~~~~~------~~~n~~~~~~~r~~~--~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l 132 (453)
T PRK09496 61 AGAEDADLLIAVTDS------DETNMVACQIAKSLF--GAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREI 132 (453)
T ss_pred cCCCcCCEEEEecCC------hHHHHHHHHHHHHhc--CCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHH
Confidence 999999987776542 233444555566664 46788999988876 3344 7789999999999999999
Q ss_pred HHHHcCCCHHHHHHHHhcccC-----cEEEEecCCCCCCCCHHHHHcc-CC-ceEEEEEEECCEEEECCCCCceecCCCE
Q 003003 451 VQCSRQKGLIKIYRHLLNYRK-----NIFNLWSFPNLAGIKYRQLRRG-FQ-EAVVCGLYRNGKIYFHPNDDETLQPTDK 523 (858)
Q Consensus 451 aq~~~~Pgl~~v~~~Ll~~~g-----~Ei~i~~~p~l~G~tf~el~~~-~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~ 523 (858)
++.+..|+...+ +.+.+ .|+.+.+.+++.|+++.|+..+ .+ ++.++|+.|+|+. +.|++++.|++||+
T Consensus 133 ~~~l~~~~~~~~----~~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r~~~~-~~p~~~~~l~~gD~ 207 (453)
T PRK09496 133 ARLIEYPGALDV----EEFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFRGGRL-IIPRGDTVIEAGDE 207 (453)
T ss_pred HHHhcCCCceEe----eeecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEECCEE-EcCCCCcEecCCCE
Confidence 999999998654 33333 3455556678999999999876 44 7999999999985 68999999999999
Q ss_pred EEEEeecCCCCCccccccccccccccchhhhhcccCCCCchHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCcEEEEe
Q 003003 524 ILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYAIELVNARLELIAKRPSKPGSKATDGNLGPKERILLLG 603 (858)
Q Consensus 524 LivIa~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~vLI~G 603 (858)
|+++++.++..+ + ......+ ....+|++|||
T Consensus 208 l~v~g~~~~l~~-------------~-------------------------~~~~~~~-----------~~~~~~iiIiG 238 (453)
T PRK09496 208 VYFIGAREHIRA-------------V-------------------------MSEFGRL-----------EKPVKRVMIVG 238 (453)
T ss_pred EEEEeCHHHHHH-------------H-------------------------HHHhCcc-----------CCCCCEEEEEC
Confidence 999999764321 0 0111211 12469999999
Q ss_pred ccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCCCcCCceEEEEECCCCCHHHHHhccccccccccCCCCC
Q 003003 604 WRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHGKLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEEL 683 (858)
Q Consensus 604 w~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~~l~~~~V~~i~GD~td~~~L~ea~i~i~~a~~~d~~~ 683 (858)
||+.+..+++.|.+ .|..+++++. ++++.+.+.+ ...+ +.++.||+++.++|++++++ + ++
T Consensus 239 ~G~~g~~l~~~L~~---~~~~v~vid~--~~~~~~~~~~----~~~~--~~~i~gd~~~~~~L~~~~~~--~---a~--- 299 (453)
T PRK09496 239 GGNIGYYLAKLLEK---EGYSVKLIER--DPERAEELAE----ELPN--TLVLHGDGTDQELLEEEGID--E---AD--- 299 (453)
T ss_pred CCHHHHHHHHHHHh---CCCeEEEEEC--CHHHHHHHHH----HCCC--CeEEECCCCCHHHHHhcCCc--c---CC---
Confidence 99999999999975 4777999986 3344443332 1223 45699999999999999887 3 34
Q ss_pred CcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcceEEEEEEccchhhHhhhcCCCcceeehhhHHHHHHHH
Q 003003 684 PLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQNLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQ 763 (858)
Q Consensus 684 ~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~~IIaEi~~~~~~~~l~~~g~~~d~I~S~~iis~vlAq 763 (858)
.+++++++ |..|+++.+.+|.+ ++ .++|+++.++++.+.++.+|++ .+|.+..+.+..+++
T Consensus 300 --~vi~~~~~----------~~~n~~~~~~~~~~----~~--~~ii~~~~~~~~~~~~~~~g~~-~vi~p~~~~~~~~~~ 360 (453)
T PRK09496 300 --AFIALTND----------DEANILSSLLAKRL----GA--KKVIALVNRPAYVDLVEGLGID-IAISPRQATASEILR 360 (453)
T ss_pred --EEEECCCC----------cHHHHHHHHHHHHh----CC--CeEEEEECCcchHHHHHhcCCC-EEECHHHHHHHHHHH
Confidence 67777654 37899888888874 44 3899999999999999998854 566667778888999
Q ss_pred HhhcccHHHHHHHHHc-cCCCeEEEEeccccccCCCCCCHHHHHHHHHhcCcEEEEEEECCeEEeCCCCCCCCccccCCC
Q 003003 764 VVENNELNEVWKDILN-AEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDNKKVINPVPKSEPLSLTLTD 842 (858)
Q Consensus 764 ~a~~~~l~~v~~~Ll~-~eG~ei~~~~~~~~~~~~~~~sF~~L~~~a~~~g~ilIG~~~~~~~iiNP~~k~~~~~l~~gD 842 (858)
....|.+..++....+ .+..|+.+.+.+.+ .+.++.++. ..+|..++|+.++++. ++|.+ ++++++||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~----~g~~l~el~---l~~~~~i~~i~r~~~~-~~p~~---~~~l~~gD 429 (453)
T PRK09496 361 HVRRGDIVAVHSLRRGAAEAIEAVAHETSKV----VGKPLKDLK---LPKGVLIGAIVRGGEV-IIPTG---DTVIEPGD 429 (453)
T ss_pred HhhccchhhhhhhcCCcEEEEEEEeCCCChh----ccCCHHHcC---CCCCCEEEEEEECCEE-EcCCC---CcEECCCC
Confidence 8888887766653211 12334555444443 356666662 3469999999998887 78864 35999999
Q ss_pred EEEEEecCCC
Q 003003 843 SLIVISELEG 852 (858)
Q Consensus 843 ~LIVI~~~~~ 852 (858)
.|+++++.+.
T Consensus 430 ~l~v~~~~~~ 439 (453)
T PRK09496 430 HVIVFVLDKK 439 (453)
T ss_pred EEEEEEcCcc
Confidence 9999998875
|
|
| >PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
| >PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants | Back alignment and domain information |
|---|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
| >COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG3273 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG3400 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter | Back alignment and domain information |
|---|
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >PRK03818 putative transporter; Validated | Back alignment and domain information |
|---|
| >COG3400 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK03818 putative transporter; Validated | Back alignment and domain information |
|---|
| >PRK04972 putative transporter; Provisional | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
| >PRK04972 putative transporter; Provisional | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >COG3273 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
| >KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 9e-25
Identities = 60/363 (16%), Positives = 120/363 (33%), Gaps = 51/363 (14%)
Query: 178 LARLLYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLI 237
+ ++ + L R + + ++ + +++G F E S L+ W +
Sbjct: 1 MVLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGE--SWTVSLY--WT-FV 55
Query: 238 SSST----HLKQRTRVERVIGFILAIWGILFYSRLLSTMTEQFRNNMQKLREGAQMQVLE 293
+ +T T + L + GI ++ + + E N Q G + V +
Sbjct: 56 TIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMG-LIDVAK 114
Query: 294 SDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAK 353
S H+++CG + L++L +L D EN+ K
Sbjct: 115 SRHVVICGWSESTLECLRELRGSE--------------VFVLAED----------ENVRK 150
Query: 354 DLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKM 413
+ T E+A ARA+I+ E D++ +L ++ K+
Sbjct: 151 KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDL------ESDSETIHCILGIR---KI 201
Query: 414 N-SVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLIKIYRHLLNYRKN 472
+ SV I E E L+ +V ++ +L + + +L
Sbjct: 202 DESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEEST 261
Query: 473 IFNLWSFP-----NLAGIKYRQLR-RGFQEAVVCGLYRNGKIYFHPNDDETLQPTDKILF 526
+ P L G+ ++ G+ R ++ P D + + D IL
Sbjct: 262 -RRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILG 320
Query: 527 IAP 529
I
Sbjct: 321 IGK 323
|
| >3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Length = 798 | Back alignment and structure |
|---|
| >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A Length = 726 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A Length = 234 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 100.0 | |
| 3naf_A | 798 | Calcium-activated potassium channel subunit alpha; | 100.0 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 100.0 | |
| 3mt5_A | 726 | Potassium large conductance calcium-activated CHA | 100.0 | |
| 4hpf_A | 722 | Potassium channel subfamily U member 1; PH-gated, | 100.0 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 100.0 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 99.89 | |
| 3mt5_A | 726 | Potassium large conductance calcium-activated CHA | 99.87 | |
| 3naf_A | 798 | Calcium-activated potassium channel subunit alpha; | 99.86 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 99.85 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 99.81 | |
| 4hpf_A | 722 | Potassium channel subfamily U member 1; PH-gated, | 99.78 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 99.71 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 99.7 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 99.69 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 99.57 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 99.54 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 99.5 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 99.35 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 99.33 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 99.2 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 99.16 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 99.14 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.97 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 98.91 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.88 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.87 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 98.79 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.79 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 98.76 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.74 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.74 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 98.73 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 98.72 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 98.72 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 98.65 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 98.63 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 98.62 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 98.58 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.58 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.54 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.39 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.38 | |
| 1vct_A | 205 | Hypothetical protein PH0236; helix rich, structura | 98.35 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 98.34 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.24 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.18 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 98.16 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.15 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.11 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.07 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.06 | |
| 3jxo_A | 86 | TRKA-N domain protein; TRKA K+ channel component, | 98.05 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 97.93 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 97.7 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 97.44 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 96.93 | |
| 1vct_A | 205 | Hypothetical protein PH0236; helix rich, structura | 96.16 | |
| 3jxo_A | 86 | TRKA-N domain protein; TRKA K+ channel component, | 92.94 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 92.13 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 91.32 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 86.01 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 82.13 |
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-54 Score=507.75 Aligned_cols=529 Identities=14% Similarity=0.176 Sum_probs=282.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhheee----eccCCCChhHHHHHhheeeeeccccccc---CCchhHHHH
Q 003003 182 LYLFNVQLERNVATFLVVLAVVCFSFVVFGGFLFFK----FRDETQSLEDCLWEAWACLISSSTHLKQ---RTRVERVIG 254 (858)
Q Consensus 182 ~y~f~~~l~~n~~~~l~~ll~~~l~iv~ig~~l~~~----~eg~~~s~~da~w~a~~~vt~sg~g~gd---~T~~gRl~s 254 (858)
.|+|.+...++...++.++++ .++++++++++|++ +|+..++|+|||||+++++ +|+|||| .|..||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~--tTvGygd~~p~~~~~~~~~ 82 (565)
T 4gx0_A 6 AYFLRGRARQNLKVLLLYCAF-LLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVM--TTLGFGDITFESDAGYLFA 82 (565)
T ss_dssp ---------CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--TTCCCCSSCCCSHHHHHHH
T ss_pred ceeeechhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeee--eeecCCCcCCCCccHHHHH
Confidence 455555544444433333333 33555555555544 5777799999999776555 6677887 456899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH-HHHHH----HhcccccccCCCeEEEEccCchHHHHHHHHHhcCccccccccccC
Q 003003 255 FILAIWGILFYSRLLST-MTEQFRN-NMQKL----REGAQMQVLESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATA 328 (858)
Q Consensus 255 vvl~l~Gi~~fa~li~~-it~~l~~-~~~~l----r~G~~~~v~~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~ 328 (858)
++++++|+++|++.++. +++.+.+ .+++. +.++ .+...++|+||||||+.|..++++|.+.+.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~hviI~G~g~~g~~la~~L~~~~~---------- 151 (565)
T 4gx0_A 83 SIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIE-LPDDTRGHILIFGIDPITRTLIRKLESRNH---------- 151 (565)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCC-CCTTCCSCEEEESCCHHHHHHHHHTTTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccCCeEEEECCChHHHHHHHHHHHCCC----------
Confidence 99999999999988876 4444432 22222 1222 224569999999999999999999988655
Q ss_pred CCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHHHHhcCccccCeEEEecCCCCCccchHHHHHHHHhcC
Q 003003 329 RKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKSYERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQ 408 (858)
Q Consensus 329 ~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr 408 (858)
++|++ |.+++.++.+.+.+ + +.++.||++++++|++|++++|+++++ +. + |..++.++++++
T Consensus 152 ---~vvvi-d~~~~~~~~~~~~~-----~--~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~-~-----D~~n~~~~~~ar 213 (565)
T 4gx0_A 152 ---LFVVV-TDNYDQALHLEEQE-----G--FKVVYGSPTDAHVLAGLRVAAARSIIA-NL-S-----DPDNANLCLTVR 213 (565)
T ss_dssp ---CEEEE-ESCHHHHHHHHHSC-----S--SEEEESCTTCHHHHHHTTGGGCSEEEE-CS-C-----HHHHHHHHHHHH
T ss_pred ---CEEEE-ECCHHHHHHHHHhc-----C--CeEEEeCCCCHHHHHhcCcccCCEEEE-eC-C-----cHHHHHHHHHHH
Confidence 56665 88888887765421 3 345589999999999999999998776 32 2 345566777888
Q ss_pred CCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHHHHHHHHcCCCHH-HHHHHHhcccCcEEEEecCCCCCCCCH
Q 003003 409 PIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQCSRQKGLI-KIYRHLLNYRKNIFNLWSFPNLAGIKY 487 (858)
Q Consensus 409 ~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~llaq~~~~Pgl~-~v~~~Ll~~~g~Ei~i~~~p~l~G~tf 487 (858)
+++ +.++||+++++++.+.++.+|+++|+++++..++.|++.+..|+.. +++..--.+.-.|+.+. .++++|+++
T Consensus 214 ~~~---~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-~s~l~G~~l 289 (565)
T 4gx0_A 214 SLC---QTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-GTPFAGKTI 289 (565)
T ss_dssp TTC---CCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC--------------------------------
T ss_pred Hhc---CceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEEEEC-CCccCCCCH
Confidence 875 6789999999999999999999999999999999999999999885 33221111122567776 789999999
Q ss_pred HHHHccCC-ceEEEEEEECCEEEECCCCCceecCCCEEEEEeecCCCCCccccccccccccccchhhhhcccCCCCchHH
Q 003003 488 RQLRRGFQ-EAVVCGLYRNGKIYFHPNDDETLQPTDKILFIAPIHGKKKPRLASSNVANRMNISQHLKVLENNSDSTSYA 566 (858)
Q Consensus 488 ~el~~~~~-~aivIGI~r~G~~~lnP~~d~~L~~GD~LivIa~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (858)
+|+..+.+ ++.++||+|+|+.. +|+++++|++||.|+++++.++..+..
T Consensus 290 ~el~~~~~~~~~vi~i~r~g~~~-~p~~~~~l~~GD~L~v~g~~~~l~~~~----------------------------- 339 (565)
T 4gx0_A 290 GESGIRQRTGLSIIGVWERGSLT-TPQRETVLTEQSLLVLAGTKSQLAALE----------------------------- 339 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCcchhcCCEEEEEEECCEEe-CCCCCcEeCCCCEEEEEeCHHHHHHHH-----------------------------
Confidence 99976644 79999999999976 999999999999999999987654310
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCcEEEEeccccHHHHHHHHhcccCCCceEEEEcCCCchhhhhhhcccCCC
Q 003003 567 IELVNARLELIAKRPSKPGSKATDGNLGPKERILLLGWRPDVVEMIEEYDNYLGPGSVLEILSDVPLDDRKRASNAIGHG 646 (858)
Q Consensus 567 ~e~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~vLI~Gw~~~~~~li~eL~~~~~~gs~I~Ii~~~p~~er~~~l~~~~~~ 646 (858)
...+.. ... +|++|||||+.+..++++|.+. |..+++++.. +++++.
T Consensus 340 ---------~~~~~~-----------~~~-~~viIiG~G~~G~~la~~L~~~---g~~v~vid~d--~~~~~~------- 386 (565)
T 4gx0_A 340 ---------YLIGEA-----------PED-ELIFIIGHGRIGCAAAAFLDRK---PVPFILIDRQ--ESPVCN------- 386 (565)
T ss_dssp ---------------------------CC-CCEEEECCSHHHHHHHHHHHHT---TCCEEEEESS--CCSSCC-------
T ss_pred ---------HHhcCC-----------CCC-CCEEEECCCHHHHHHHHHHHHC---CCCEEEEECC--hHHHhh-------
Confidence 000111 113 9999999999999999999754 6779999973 344321
Q ss_pred CcCCceEEEEECCCCCHHHHHhccccccccccCCCCCCcEEEEEeCCCccCCCCChhhHHHHHHHHHHHHHhhhhCCCcc
Q 003003 647 KLKNVQVFHKIGNPLNFETLKDTIMNIQNSFKDGEELPLSIVVISDREWLLGDPSRADKQSAYSLLLAENICNKLGVKVQ 726 (858)
Q Consensus 647 ~l~~~~V~~i~GD~td~~~L~ea~i~i~~a~~~d~~~~~sivILtd~d~~~~~~~~aDa~~l~~~L~~r~l~~~~g~~~~ 726 (858)
+. ..++||++|.++|+++|++ + +| .+|+++++ |+.|+++.+.+|++.++ +
T Consensus 387 -~~----~~i~gD~t~~~~L~~agi~--~---ad-----~vi~~~~~----------d~~ni~~~~~ak~l~~~-----~ 436 (565)
T 4gx0_A 387 -DH----VVVYGDATVGQTLRQAGID--R---AS-----GIIVTTND----------DSTNIFLTLACRHLHSH-----I 436 (565)
T ss_dssp -SS----CEEESCSSSSTHHHHHTTT--S---CS-----EEEECCSC----------HHHHHHHHHHHHHHCSS-----S
T ss_pred -cC----CEEEeCCCCHHHHHhcCcc--c---cC-----EEEEECCC----------chHHHHHHHHHHHHCCC-----C
Confidence 21 5699999999999999988 3 45 78887764 58999999999996554 7
Q ss_pred eEEEEEEccchhhHhhhcCCCcceeehhhHHHHHHHHHhhcccHHHHHHHHHccCCCeEEEEec-cccccCCCCCCHHHH
Q 003003 727 NLVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDI-SLYMKEGENPSFFEL 805 (858)
Q Consensus 727 ~IIaEi~~~~~~~~l~~~g~~~d~I~S~~iis~vlAq~a~~~~l~~v~~~Ll~~eG~ei~~~~~-~~~~~~~~~~sF~~L 805 (858)
+||+++.++++.+.++++|++ .+|.+..+.+..+++....+.+..+- ++.+++..+. +.+ .+.+..++
T Consensus 437 ~iiar~~~~~~~~~l~~~G~d-~vi~p~~~~~~~i~~~~~~~~~~~~~------~~~~~~~v~~~s~~----~Gk~l~el 505 (565)
T 4gx0_A 437 RIVARANGEENVDQLYAAGAD-FVVSNASVGANILGNLLEHKESAFLS------EGMAVFRRPLPPAM----AGKTIAET 505 (565)
T ss_dssp EEEEEESSTTSHHHHHHHTCS-EEEEHHHHHHHHHHHHHHCC--------------------------------------
T ss_pred EEEEEECCHHHHHHHHHcCCC-EEEccchHHHHHHHHHhcchhhhhhh------cCeEEEEEcCCCCc----CCCCHHHc
Confidence 999999999999999999866 78888888899999987776544321 2333332222 222 34555555
Q ss_pred HHHHHhcCcEEEEEEEC--CeEEeCCCCCCCCccccCCCEEEEEecCCCCc
Q 003003 806 SERAHLRREVAIGYVKD--NKKVINPVPKSEPLSLTLTDSLIVISELEGEQ 854 (858)
Q Consensus 806 ~~~a~~~g~ilIG~~~~--~~~iiNP~~k~~~~~l~~gD~LIVI~~~~~~~ 854 (858)
.-+ ...|..++|++++ ++.++||.+ ++.+++||.|+++++.+.-+
T Consensus 506 ~l~-~~~~~~v~aI~R~~~~~~~~~p~~---~~~l~~GD~liv~g~~~~i~ 552 (565)
T 4gx0_A 506 RLR-PLTGCSIVAIEAPDRADILISPPP---ETILAEGARLILIGTSEQEK 552 (565)
T ss_dssp ---------------------------------------------------
T ss_pred chh-hhcCCEEEEEEeCCCCceEECcCC---CCEECCCCEEEEEECHHHHH
Confidence 322 2568999999998 888888975 35999999999999877533
|
| >3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A | Back alignment and structure |
|---|
| >4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
| >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A | Back alignment and structure |
|---|
| >3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
| >1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A | Back alignment and structure |
|---|
| >3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP} | Back alignment and structure |
|---|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 858 | ||||
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 3e-04 |
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Voltage-gated potassium channels superfamily: Voltage-gated potassium channels family: Voltage-gated potassium channels domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Score = 38.1 bits (89), Expect = 3e-04
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 197 LVVLAVVCFSFVVFGGFLFFKFRDETQSLEDCLWEAWACLIS-SSTHLKQRTRVERVIGF 255
+ ++ + +++G F E +S L+ + + + T +
Sbjct: 2 ATRILLLVLAVIIYGTAGFHFI--EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTV 59
Query: 256 ILAIWGILFYSRLLSTMTE 274
L + GI ++ + + E
Sbjct: 60 TLIVLGIGTFAVAVERLLE 78
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 99.76 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 99.68 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 99.59 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 99.55 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 99.55 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 99.5 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 99.26 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 99.09 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 98.99 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.45 | |
| d2fy8a2 | 92 | Potassium channel-related protein MthK, C-terminal | 98.44 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 98.34 | |
| d1vcta2 | 94 | Hypothetical protein PH0236, C-terminal domain {Py | 98.26 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.2 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 96.5 | |
| d2fy8a2 | 92 | Potassium channel-related protein MthK, C-terminal | 96.27 | |
| d1vcta2 | 94 | Hypothetical protein PH0236, C-terminal domain {Py | 95.72 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 91.8 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 88.66 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 88.59 | |
| d2p7tc1 | 34 | Potassium channel protein {Streptomyces lividans [ | 88.08 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 86.31 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 86.3 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 84.66 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 83.67 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 83.38 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 82.89 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 82.82 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 82.57 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 80.73 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 80.69 |
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.2e-18 Score=164.55 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=114.5
Q ss_pred CCCeEEEEccCchHHHHHHHHHhcCccccccccccCCCceEEEEeCCChHHHHHHHHhhccccCCceEEEecCCCCCHHH
Q 003003 293 ESDHIIVCGVNSHLSFILKQLNKYHEFSVRLGTATARKQRILLLSDLPRKQMDKLAENIAKDLNHIDILSKSCSLTLTKS 372 (858)
Q Consensus 293 ~~~HIII~G~~~~~~~li~eL~~~~~~~~rlG~~~~~~~~IVVL~d~~~~~me~l~~~~~~d~~~~~Vv~~~Gd~~~~e~ 372 (858)
.+|||||||||+.|..++++|.+.+. .++++ +.+++......+.... .+..+ +.||++++++
T Consensus 2 ~knHiII~G~g~~g~~l~~~L~~~~~-------------~v~vI-d~d~~~~~~~~~~~~~--~~~~v--i~Gd~~d~~~ 63 (153)
T d1id1a_ 2 RKDHFIVCGHSILAINTILQLNQRGQ-------------NVTVI-SNLPEDDIKQLEQRLG--DNADV--IPGDSNDSSV 63 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTC-------------CEEEE-ECCCHHHHHHHHHHHC--TTCEE--EESCTTSHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-------------CEEEE-eccchhHHHHHHHhhc--CCcEE--EEccCcchHH
Confidence 38999999999999999999998655 46666 4444332222221111 14444 5899999999
Q ss_pred HHhcCccccCeEEEecCCCCCccchHHHHHHHHhcCCCCCCCCCcEEEEEcCcccHHHHHhcCCCeEEehHHHHHHHHHH
Q 003003 373 YERAAANKARAIIILPTKGDRYEVDTDAFLSVLALQPIPKMNSVPTIVEVSNPNTCELLKSLSGLKVEPVENVASKLFVQ 452 (858)
Q Consensus 373 L~rA~i~~A~aVIIl~~~~D~~e~Da~~l~~vLalr~~~~~~~~~iIaev~d~~~~~~l~~ag~d~Vi~~~~i~~~llaq 452 (858)
|++|++++|+++|+++++ |..++.+++++|+++ +..++||++.++++.+.++.+|+|.|++|+.++++.|++
T Consensus 64 L~~a~i~~a~~vi~~~~~------d~~n~~~~~~~r~~~--~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~l~~ 135 (153)
T d1id1a_ 64 LKKAGIDRCRAILALSDN------DADNAFVVLSAKDMS--SDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILAR 135 (153)
T ss_dssp HHHHTTTTCSEEEECSSC------HHHHHHHHHHHHHHT--SSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHH
T ss_pred HHHhccccCCEEEEcccc------HHHHHHHHHHHHHhC--CCCceEEEEcCHHHHHHHHHCCCCEEECHHHHHHHHHHH
Confidence 999999999988776642 567777888888876 678999999999999999999999999999999999999
Q ss_pred HHcCCCHHH
Q 003003 453 CSRQKGLIK 461 (858)
Q Consensus 453 ~~~~Pgl~~ 461 (858)
.+..|++..
T Consensus 136 ~l~~~~v~~ 144 (153)
T d1id1a_ 136 VLNGEEINN 144 (153)
T ss_dssp HHTTCCCCH
T ss_pred HhCcCCCCH
Confidence 999998854
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
| >d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|