Citrus Sinensis ID: 003043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850----
MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY
cccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccc
cccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHcccccccccccEEEccccEcccHHccccEEcEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccEEEEccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHcccccccc
msgkgggggvgkgnngissipagSRKIVQSLKEIVNCPESEIYAMLKEcnmdpneavnrllsqdpfhevkskrdkrkeskdttdsrsrgasntsnrggrggtdrygvrsgaayftsnesgtlqskpaykkengthgyagssssaagvvannmnqrppfysddmptenktlevvsgdgissssqpssgfqsswlgvpgqvSMADIvkmgrphnkapphknvnnhhvlappaavshqelhssqghskvsefnsepevatsqhvspndewpsiehppamssvlegsaqsdlytkpahselytnpsnlsvdrtDQQIEAQLdeveeeedgpheipktnhvgsapvssrnmqednsggsslfennlynnmssyqphrhafehdeahdgtsvSAKLQQLnlqnddreapveedspsviipnhlqvhssdcshlsfgsfgtgidsafsgpfasrplknnleersetadapsighsdarnpeyygdehlrstsdanianrpnvtagdydspavsqpsevlKQESVEALQEnqysfpssapgynyenaQQLNSAFAHQQAytnslpstlltsnvqparepdlqyspfpmtqsmptkysntassisgptismpealrgasistaqptqqtmpgasvatgpalpphlavhpysqptlplghfanmigypflpqsytympsgfqqafagnstYHQSLAAAvlpqyknsvsvsslpqsaavasgygfgnstsipggnfplntptapagttmgyddvlgsqykdnnhlislqqndnsamwvhgpgsrtmsavpastyysfqgqnqqpggfrqgqqpsqhfgalgypnfyhsqtgmslehqqqnprdatlggsqaqpskqtqQLWQNSY
msgkgggggvgkgnngissipagSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRllsqdpfhevkskrdkrkeskdttdsrsrgasntsnrggrggtdrygVRSGAAyftsnesgtlqsKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELytnpsnlsvdrTDQQIEAQLDEVEeeedgpheipktnhvgsapvssrNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERsetadapsighsdarNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDAtlggsqaqpskqtqqlwqnsy
MSgkgggggvgkgnngISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVkskrdkrkeskdttdsRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYagssssaagvvaNNMNQRPPFYSDDMPTENKTLEVVsgdgissssqpssgfqssWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLDeveeeeDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYsfqgqnqqpggfrqgqqpsqHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY
**************************IVQSLKEIVNCPESEIYAMLKECN**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IPNHLQVHSSDCSHLSFGSFGTGI*******************************************************************************************************************************************************************************************************LAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKN***************GYGF***********************MGYDDVLGSQYKDNNHLIS********MWV****************************************ALGYPNFY***************************************
***********************SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAV***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LQV***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
**********GKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPF**********************************GTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVV****************SSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPA************************************WPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLD**********EIPKTNHVGS**************GSSLFENNLYNNMSSYQPHRHAFEH*********SAKLQQLNLQ***********SPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNL***********IGHSDARNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASI***************ATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGM*********************************
********************PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKR*********************************************************************************************************************************************************************************************************************************************************************************************************************************************DSPSVIIPNHLQVHSSDCSHLSFGSFG*****************************************************************************************************************A*Q*AYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSM**************************************GASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYS*QGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMS********************************
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MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSxxxxxxxxxxxxxxxxxxxxxPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
255557423849 conserved hypothetical protein [Ricinus 0.968 0.974 0.688 0.0
224116450911 predicted protein [Populus trichocarpa] 0.968 0.907 0.661 0.0
359483606866 PREDICTED: uncharacterized protein LOC10 0.956 0.943 0.666 0.0
297740637799 unnamed protein product [Vitis vinifera] 0.888 0.949 0.629 0.0
356528381837 PREDICTED: uncharacterized protein LOC10 0.943 0.962 0.6 0.0
356511015846 PREDICTED: uncharacterized protein LOC10 0.939 0.947 0.613 0.0
449433553845 PREDICTED: uncharacterized protein LOC10 0.946 0.956 0.574 0.0
449505951844 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.944 0.956 0.568 0.0
356532397838 PREDICTED: uncharacterized protein LOC10 0.939 0.957 0.565 0.0
357519233865 hypothetical protein MTR_8g088190 [Medic 0.953 0.941 0.558 0.0
>gi|255557423|ref|XP_002519742.1| conserved hypothetical protein [Ricinus communis] gi|223541159|gb|EEF42715.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/876 (68%), Positives = 687/876 (78%), Gaps = 49/876 (5%)

Query: 1   MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60
           MSGK      GKGN+GIS IPAGSRK+VQSLKEIVNCPE EIYAMLK+CNMDPNEAVNRL
Sbjct: 1   MSGKAAINN-GKGNSGISGIPAGSRKMVQSLKEIVNCPEPEIYAMLKDCNMDPNEAVNRL 59

Query: 61  LSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESG 120
           LSQDPFHEVKSKR+K+KE+KDTT+ RSR A+N ++R GR G DRYG R G++ F+SN+ G
Sbjct: 60  LSQDPFHEVKSKREKKKETKDTTEPRSRVANNATHRAGRVGADRYG-RGGSSQFSSNDPG 118

Query: 121 TLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISS 180
               KPAYKKENGT+  +  SSSA  +   N+N+RP   SD +  ENK L V + DG+S 
Sbjct: 119 VSHGKPAYKKENGTNA-SAGSSSAPSMAGTNINRRPILNSDLVAAENKLLTVGASDGVSL 177

Query: 181 SSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKA-PPHKNVNNHHVLAPPAAVSHQELHS 239
           SSQP++GFQS W+GVPGQVSMADIVKMGRPHNKA PPH +VN+ H  APP    + +LH 
Sbjct: 178 SSQPTAGFQSPWVGVPGQVSMADIVKMGRPHNKAMPPHHSVNHRHPAAPPLTALNHDLHL 237

Query: 240 SQGHS-KVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSS--VLEGSAQSDLYTKPAHSE 296
           S+ +S KVSE N+EPEV  SQ V  NDEWPSIE P A+S   VLE          P+ SE
Sbjct: 238 SENYSAKVSEVNAEPEVTASQLVHANDEWPSIE-PSAVSMPPVLEA---------PSDSE 287

Query: 297 LYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSL 356
           L T+PSNL +DR +Q ++++LD+ +  ED   E    NHVG   VSSR ++ED++ GSS+
Sbjct: 288 LCTDPSNLPLDRVNQHMQSELDDTQSTEDDHIETFNVNHVGPTSVSSRTIKEDDAVGSSM 347

Query: 357 FENNLYNNMSSYQPHRHAFEHDEAHDG-TSVSAKLQQLNLQNDDREAPVEEDSPSVIIPN 415
           FE+NLY NM SYQ HRHAFEH EA DG +SV+A LQ L+LQ +D+ A  +ED+PSVIIPN
Sbjct: 348 FESNLYGNMGSYQTHRHAFEH-EAEDGASSVAANLQHLSLQGEDQAASSDEDNPSVIIPN 406

Query: 416 HLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPEY 475
           HLQVH+ DCSHLSFGSFG+GI SAF G FASRPLKNNLEE SE  DA S  HSDARN EY
Sbjct: 407 HLQVHAQDCSHLSFGSFGSGIGSAFPGAFASRPLKNNLEETSEVVDASSAVHSDARNTEY 466

Query: 476 YGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYN 535
           YGDEHLR+ +D N+ +R  V+ G+YDSPA  QP EVLK+E+ EA Q NQY+FPSSA GY 
Sbjct: 467 YGDEHLRNAADDNLIHRAGVSPGNYDSPAGPQP-EVLKEETPEAAQGNQYAFPSSASGYT 525

Query: 536 YENAQQLNSAFAH----------------QQAYTNSLPSTLLTSNVQPAREPDLQYSPFP 579
           +EN+QQLN+AF++                 QAYTNSLPSTLLTS VQ  REPDL YSPFP
Sbjct: 526 FENSQQLNAAFSNPQTSSQMQNMTPFSNVMQAYTNSLPSTLLTSTVQQGREPDLPYSPFP 585

Query: 580 MTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVH 639
           +TQSMPTKYSNTASSISGP+ISMPEALR  SIST QPT QT+PG SVATGPAL  HLAVH
Sbjct: 586 VTQSMPTKYSNTASSISGPSISMPEALRAPSISTPQPTPQTLPGGSVATGPALQQHLAVH 645

Query: 640 PYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSV 699
           PYSQPTLPLG FANMIGYPFLPQSYTYMPS FQQ FAGNSTYHQSL AAVLPQYKNSVSV
Sbjct: 646 PYSQPTLPLGPFANMIGYPFLPQSYTYMPSAFQQTFAGNSTYHQSL-AAVLPQYKNSVSV 704

Query: 700 SSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQ 759
           +SLPQSAAVAS YGFG+STS+P G           GTT+GYDD L SQYKD NHLISLQQ
Sbjct: 705 TSLPQSAAVASAYGFGSSTSVPAG-----------GTTIGYDDGLSSQYKDGNHLISLQQ 753

Query: 760 NDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPS-QHFGALGYPNFYHSQ 818
           NDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQP G+RQGQQ S QHFGALGYPN+YHSQ
Sbjct: 754 NDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPAGYRQGQQLSQQHFGALGYPNYYHSQ 813

Query: 819 TGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY 854
           TG+SLE QQQN R+ +LGGSQ QPSKQTQQLWQNSY
Sbjct: 814 TGISLELQQQNSREGSLGGSQGQPSKQTQQLWQNSY 849

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116450|ref|XP_002317304.1| predicted protein [Populus trichocarpa] gi|222860369|gb|EEE97916.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483606|ref|XP_002271969.2| PREDICTED: uncharacterized protein LOC100245196 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740637|emb|CBI30819.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528381|ref|XP_003532782.1| PREDICTED: uncharacterized protein LOC100803908 [Glycine max] Back     alignment and taxonomy information
>gi|356511015|ref|XP_003524227.1| PREDICTED: uncharacterized protein LOC100776017 [Glycine max] Back     alignment and taxonomy information
>gi|449433553|ref|XP_004134562.1| PREDICTED: uncharacterized protein LOC101211388 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449505951|ref|XP_004162612.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224560 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532397|ref|XP_003534759.1| PREDICTED: uncharacterized protein LOC100783978 [Glycine max] Back     alignment and taxonomy information
>gi|357519233|ref|XP_003629905.1| hypothetical protein MTR_8g088190 [Medicago truncatula] gi|355523927|gb|AET04381.1| hypothetical protein MTR_8g088190 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
TAIR|locus:2013713831 AT1G29370 "AT1G29370" [Arabido 0.605 0.622 0.471 4.6e-120
TAIR|locus:2013693831 AT1G29350 "AT1G29350" [Arabido 0.591 0.607 0.477 8.5e-119
TAIR|locus:2117671758 AT4G18150 "AT4G18150" [Arabido 0.358 0.403 0.351 5.5e-81
TAIR|locus:2170433607 AT5G46380 "AT5G46380" [Arabido 0.117 0.164 0.415 2.8e-21
TAIR|locus:2091087841 AT3G07660 "AT3G07660" [Arabido 0.126 0.128 0.406 5.2e-21
TAIR|locus:2088202848 AT3G13990 "AT3G13990" [Arabido 0.053 0.054 0.553 1.3e-14
UNIPROTKB|Q16VD3 1250 lig "Protein lingerer" [Aedes 0.606 0.414 0.218 2.4e-06
TAIR|locus:2090019567 GIP1 "GBF-interacting protein 0.125 0.188 0.295 3e-06
FB|FBgn0085362578 Vml "Vitelline membrane-like" 0.351 0.519 0.265 2.5e-05
UNIPROTKB|Q7PMS9 1249 lig "Protein lingerer" [Anophe 0.331 0.226 0.235 8.9e-05
TAIR|locus:2013713 AT1G29370 "AT1G29370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1154 (411.3 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
 Identities = 273/579 (47%), Positives = 350/579 (60%)

Query:   235 QELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAH 294
             Q   + Q  +  SE N E +V+ +      DEWPSIE P A S+       S L   PA 
Sbjct:   203 QNKTTKQNVNMGSEINHEHKVSANHQAPVKDEWPSIEKPLAPST-------SSLSVAPAE 255

Query:   295 SELYTNPSNLSVDRTDQQIEAQLDXXXXXXDGPHEIPKTNHVGSAPVSSRNMQEDNSGGS 354
             SE+   P++   DR DQ ++ +L+       GP E  K +HV      + ++QED S  S
Sbjct:   256 SEVRNGPADFQSDRGDQYLKDRLENIHIAESGPSESRKVDHV-----QADSVQEDESVVS 310

Query:   355 SLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIP 414
             S  ++N Y   S   P  H   H +  D +S SA  QQL+  + D+E   E+D P+V+IP
Sbjct:   311 SEIDDNPYQTQS--HPVEH---HKDEDDVSSGSASFQQLD--SHDQEVSHEKDRPAVVIP 363

Query:   415 NHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARNPE 474
             NHL +H+ +C+ LSFGSFG        G F SRPL N++E  S+ A  P I HSDARN E
Sbjct:   364 NHLLIHTEECAQLSFGSFG--------G-FGSRPLSNSVEATSDVA--PQIEHSDARNTE 412

Query:   475 YYGDEHLRSTSDANIANRPNVTAGDYD----SPAVSQP-SEVLKQESVEALQENQ-YSFP 528
             +YGDEHL ST++ N+ + P     D         + Q  SE  ++      Q  Q Y++ 
Sbjct:   413 FYGDEHLGSTTNGNMVHTPATGNYDDSLETRREVLKQENSEGAQEHQYTFTQSEQGYAYE 472

Query:   529 S-------SAPGYNYENAQQ----LNSAFAHQQAYTNSLPSTLLTSNVQPAREPDLQYSP 577
             +       SA   ++ N+Q     L+S     Q Y++S+P+TLL    Q ARE D QYSP
Sbjct:   473 NAKQQQMNSAYDASHTNSQNQMHNLDSLSNVMQGYSHSVPNTLLAQTAQNARELDFQYSP 532

Query:   578 FPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLA 637
             F   QSM ++ SN ASS+ G +ISMPEALRG+ I   QPTQQT+PGA++ATGPALP  L 
Sbjct:   533 FSAQQSMQSRTSNNASSLGGQSISMPEALRGSGIPATQPTQQTLPGANIATGPALPQQLP 592

Query:   638 VHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSV 697
             +H YSQPTLPL H+ANMIGYP +PQ+Y YMPS FQQ FAGNS YHQ LAA +LPQYK +V
Sbjct:   593 MH-YSQPTLPLTHYANMIGYPLMPQNYPYMPSAFQQTFAGNSAYHQQLAA-LLPQYKTNV 650

Query:   698 SVSSLPQSA-AVASGYGFGNSTSI-PGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLI 755
             S  +LPQSA A AS YGFGNST++   GNFPLN  +A  GTT+GYDDVL SQYK+N HL+
Sbjct:   651 SPGNLPQSATAPASAYGFGNSTNVGSAGNFPLNQQSATTGTTLGYDDVLSSQYKEN-HLL 709

Query:   756 SLQQ----------NDNSAMWVHGPGSRTMSAVPASTYY 784
             +LQQ          N+NSAMW  G GSRTMS VP +TYY
Sbjct:   710 ALQQQQQQQQHQQQNENSAMWHQGHGSRTMSGVPTNTYY 748
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2013693 AT1G29350 "AT1G29350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117671 AT4G18150 "AT4G18150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170433 AT5G46380 "AT5G46380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091087 AT3G07660 "AT3G07660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088202 AT3G13990 "AT3G13990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q16VD3 lig "Protein lingerer" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
TAIR|locus:2090019 GIP1 "GBF-interacting protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0085362 Vml "Vitelline membrane-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q7PMS9 lig "Protein lingerer" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XI000498
hypothetical protein (911 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
pfam0697260 pfam06972, DUF1296, Protein of unknown function (D 3e-31
>gnl|CDD|115617 pfam06972, DUF1296, Protein of unknown function (DUF1296) Back     alignment and domain information 
 Score =  115 bits (290), Expect = 3e-31
 Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 20 IPAGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE 78
          IPA  RK +QS+KE+V    +++IYAMLKECNMDPNE V +LLSQD FHEVKSKR+K+KE
Sbjct: 1  IPAELRKTIQSIKEVVGKHSDADIYAMLKECNMDPNETVQKLLSQDTFHEVKSKREKKKE 60

This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function. Structural modelling suggests this domain may bind nucleic acids. Length = 60

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 854
PF0697260 DUF1296: Protein of unknown function (DUF1296); In 99.92
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 97.75
smart0054643 CUE Domain that may be involved in binding ubiquit 97.03
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 96.94
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 96.65
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 96.64
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 94.46
PRK06369115 nac nascent polypeptide-associated complex protein 92.88
TIGR00264116 alpha-NAC-related protein. This hypothetical prote 92.83
PRK09377290 tsf elongation factor Ts; Provisional 92.09
COG1308122 EGD2 Transcription factor homologous to NACalpha-B 91.99
PF1154753 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro 91.44
TIGR00601378 rad23 UV excision repair protein Rad23. All protei 90.15
PF0893879 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This 89.95
CHL00098200 tsf elongation factor Ts 89.48
TIGR00116290 tsf translation elongation factor Ts. This protein 88.46
PRK12332198 tsf elongation factor Ts; Reviewed 87.75
PF0347439 DMA: DMRTA motif; InterPro: IPR005173 This region 87.62
COG0264296 Tsf Translation elongation factor Ts [Translation, 84.84
KOG1071340 consensus Mitochondrial translation elongation fac 80.78
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function Back     alignment and domain information 
Probab=99.92  E-value=7.4e-26  Score=188.97  Aligned_cols=59  Identities=86%  Similarity=1.268  Sum_probs=57.4

Q ss_pred             CCcchHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHhhhcCCCcceeecccccccc
Q 003043           20 IPAGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE   78 (854)
Q Consensus        20 ip~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~av~rLl~q~~~~EVkkKr~kkKe   78 (854)
                      ||+++||+||.||||+++ ||+|||+||+|||||||||++|||+||+|||||+||+||||
T Consensus         1 IP~~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD~FheVk~krdkkKE   60 (60)
T PF06972_consen    1 IPAASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQDPFHEVKSKRDKKKE   60 (60)
T ss_pred             CChHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHhhhhccC
Confidence            899999999999999955 99999999999999999999999999999999999999997

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed Back     alignment and domain information
>TIGR00264 alpha-NAC-related protein Back     alignment and domain information
>PRK09377 tsf elongation factor Ts; Provisional Back     alignment and domain information
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] Back     alignment and domain information
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins Back     alignment and domain information
>CHL00098 tsf elongation factor Ts Back     alignment and domain information
>TIGR00116 tsf translation elongation factor Ts Back     alignment and domain information
>PRK12332 tsf elongation factor Ts; Reviewed Back     alignment and domain information
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO [] Back     alignment and domain information
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 99.03
2dhy_A67 CUE domain-containing protein 1; structural genomi 97.41
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 97.38
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 97.22
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 97.11
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 97.08
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 97.05
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 97.04
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 96.97
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 96.9
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 96.77
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 96.76
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 96.73
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 96.73
1wji_A63 Tudor domain containing protein 3; UBA domain, str 96.49
2di0_A71 Activating signal cointegrator 1 complex subunit 2 96.46
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 96.27
2dna_A67 Unnamed protein product; ubiquitin associated doma 95.98
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 95.85
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 95.74
2cwb_A108 Chimera of immunoglobulin G binding protein G and 95.57
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 95.51
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 95.48
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 95.17
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 95.07
2qsf_X171 RAD23, UV excision repair protein RAD23; alpha-bet 94.96
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 94.62
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 94.49
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 94.43
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 94.37
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 94.07
2d9s_A53 CBL E3 ubiquitin protein ligase; UBA domain, dimer 93.55
2qho_B53 E3 ubiquitin-protein ligase EDD1; protein-protein 93.42
2ejs_A58 Autocrine motility factor receptor, isoform 2; CUE 93.01
2ekf_A61 Ancient ubiquitous protein 1; CUE, ubiquitin ligas 92.72
1vdl_A80 Ubiquitin carboxyl-terminal hydrolase 25; UBA doma 92.68
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 92.64
2lva_A129 Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi 91.7
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 92.49
2juj_A56 E3 ubiquitin-protein ligase CBL; alpha helix, UBA 92.27
4g3o_A58 E3 ubiquitin-protein ligase AMFR; all-helical stru 92.08
1p3q_Q54 VPS9P, vacuolar protein sorting-associated protein 91.95
2crn_A64 Ubash3A protein; compact three-helix bundle, struc 91.85
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 91.6
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 91.52
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 91.39
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 91.16
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 91.13
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 90.87
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 90.68
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 89.63
1vek_A84 UBP14, ubiquitin-specific protease 14, putative; U 89.17
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 88.95
1tr8_A102 Conserved protein (MTH177); chaperones, nascent po 88.86
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 88.16
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 87.03
2oo9_A46 E3 ubiquitin-protein ligase CBL; alpha-helical dom 86.88
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 84.03
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
Probab=99.03  E-value=1.4e-10  Score=106.74  Aligned_cols=56  Identities=29%  Similarity=0.373  Sum_probs=50.1

Q ss_pred             cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcCC----Ccceeeccccccc
Q 003043           22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKRDKRK   77 (854)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q~----~~~EVkkKr~kkK   77 (854)
                      ++++++|+.|+|++|++++++..||.+||+|+++||.+|+++.    .|++|+|||.+.+
T Consensus        37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~~~~kKk~~~~   96 (104)
T 1wj7_A           37 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSG   96 (104)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCCCSSS
T ss_pred             ccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCceeeecccccccC
Confidence            5789999999999999999999999999999999999999874    6999997664433
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens} Back     alignment and structure
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Back     alignment and structure
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens} Back     alignment and structure
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A Back     alignment and structure
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 854
d1wj7a191 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-li 6e-04
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Length = 91 Back     information, alignment and structure

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL----SQDPFHEVKSKRDKRKE 78
           + V+ L +I    + E    L +CN D N A+N LL        +  V  K+    +
Sbjct: 33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQ 90

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 99.17
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 97.19
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 97.19
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 97.01
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 96.55
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 96.39
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 96.27
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 96.23
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 96.21
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 96.12
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 95.42
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 95.25
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 95.19
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 95.17
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 94.74
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 94.12
d1vdla_80 Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M 92.3
d2cpwa151 Cbl-interacting protein p70, STS1 {Human (Homo sap 91.59
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 91.06
d2di0a163 Activating signal cointegrator 1 complex subunit 2 90.04
d1whca_64 UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta 89.67
d1veka_84 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 86.49
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=7.4e-12  Score=110.12  Aligned_cols=54  Identities=30%  Similarity=0.401  Sum_probs=49.6

Q ss_pred             CcchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHhhhcCC----Ccceeecccc
Q 003043           21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKRD   74 (854)
Q Consensus        21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~av~rLl~q~----~~~EVkkKr~   74 (854)
                      -++++++|++|.||++++++|++.||+|||+|++.||+.||++.    .|+.++|||.
T Consensus        29 D~~i~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~~~~~~Wet~~kKk~   86 (91)
T d1wj7a1          29 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKG   86 (91)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCCC
T ss_pred             cHHHHHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHHhcCCCCCceeecccccc
Confidence            35799999999999999999999999999999999999999974    6999998653
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure