Citrus Sinensis ID: 003088

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------85

MEVSTCSPLSVNSRCLFANQPPPPRHRLPPLQYVNPMSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPLI

cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccHHHccccccccccccHHHHccccccccccccHHHHccccHHHHHHHHccccHHHHcccccccccccHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHHHHHHHHHHHHcccccccEEccccccccHHHHHHccccccccccccccccHHHHHcccccEEEEcHHHHccccHHHHHHHHHHccccccccccccccccccEEEEcccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEcccccHHHHcccccc

******************************LQYVNPMSSFFNISMISHKVQFFHSNYTSN**************IIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWH**************************ISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL***************************************LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASM***********************VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGYEEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSHGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNESTSYAGMKTLVVEELKAYFRPELLNRIDEVVVFRSLEKAQVCQLPLI

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Chaperone protein ClpD, chloroplastic	Molecular chaperone that may interact with a clpP-like protease involved in degradation of denatured proteins in the chloroplast.	confident	P42762
Chaperone protein ClpD1, chloroplastic	Molecular chaperone that may function in heat stress response. May interact with a clpP-like protease involved in degradation of denatured proteins in the chloroplast.	probable	Q6H795
Chaperone protein ClpD2, chloroplastic	Molecular chaperone that may interact with a clpP-like protease involved in degradation of denatured proteins in the chloroplast.	probable	Q7XL03

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1QVR, chain A
Confidence level:very confident
Coverage over the Query: 83-150,162-354,366-390,415-707,722-848
View the alignment between query and template
View the model in PyMOL

Template: 3PXG, chain A
Confidence level:very confident
Coverage over the Query: 82-150,165-245,265-352,368-398,416-605
View the alignment between query and template
View the model in PyMOL