Citrus Sinensis ID: 003096

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------85
MLIHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGICESYFEDPAFDGGDGPCFGPFNGTVDAVGLSNWSYPSGTQAGSSFQVFDAVSNVSDVFVDLDHPSVACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLIDISEQLIENTLPFVREDPSIGHFVPSQPTALFSESNSGNYTSENWISLRLGSTCADTGSHSQSATTNALELRSSCRPSGASLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
cccHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEcccccccccccccccccccccHHHHHHHccccccEEEEEEEEcccccccccccccEEEEEccEEEEEcccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEEEccHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccHHHHcccEEEEEcccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cEEEEccHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEccccccccEccEEEEEccccccccccccccEEEEEEEEccccccHHEccccccccEEEEcccccccccccEEEEEEEEccHHHHHHHccccccEEEEEEEEcccccccccccccEEEEEcccEEEEcccccccccccccccccccEcccEcccccEEEEEEccccEEEEEEEEEEcccHHHHHHHccHHcccccHHHHHHHHHHHcccccccccccccccEEEEEEEEEEEEcccccHHHcccccccccccccccccEEEEEEccccccEEEEEcccccccccccccHHHHHHHHHcccccEcccccccccHHHHHHHHHHHHHHHccccccEEEEcccccEEEcccccccccccccccccccccccccccccccEEcccccccEEEEEEEccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEcc
MLIHVLNLQGKLVNFRMKELKDVLtklglpkqgkkqdLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAedslnlggkifcpcgtslpseskiqcvdprclvqqhiscviipekpmeeirllpplffcetcrikradpfWITVAHLVSpmklvasniptdgtnpLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLvrtvnrpgtqllgsngrddGALITLYIGegvnqislsgcdirnfcFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCfggvatgnedgdsdlEIIADSIIvnlrcpkvfseensdvllfgipfdctFHWLFLTCNwqmsgsrirvagrfkpcvhtgcfdLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEIEVkhdgswrvkckgennnlaewhspdgstyaarsevvsnsetkqLVNSGQTIIARIKKNLSanvdvskywstspnkhmsyhvENNSEKIITmsssasgcsrdeedptvnqdtnsrkdlndiphridpifgtgnqtdgligdtdiivlsdseedndhlapstsyqsyhpidsapdgicesyfedpafdggdgpcfgpfngtvdavglsnwsypsgtqagssfQVFDavsnvsdvfvdldhpsvacslpmngykspskstltcdsgvldspvchsnidiGEQLIDISEQLIENtlpfvredpsighfvpsqptalfsesnsgnytsenwislrlgstcadtgshsqsaTTNALELRsscrpsgaslrgdpkctrtndakifdgpfsfprqprsvrqkvhls
MLIHVLNLQGKLVNFRMKELKDVLtklglpkqgkkqdlVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPgtqllgsngrdDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVlslvpketagevfedalTRVRRCFGgvatgnedgdsdlEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEievkhdgswrvKCKGENNNLAEWHSPDGSTYAARSEVVsnsetkqlvnSGQTIIARIKKNLSANVDVSKYwstspnkhmsyHVENNSEKIITMSssasgcsrdeedptvnqdtnsrkdlndipHRIDPIfgtgnqtdgliGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGICESYFEDPAFDGGDGPCFGPFNGTVDAVGLSNWSYPSGTQAGSSFQVFDAVSNVSDVFVDLDHPSVACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLIDISEQLIENTLPFVREDPSIGHFVPSQPTALFSESNSGNYTSENWISLRLGSTCADTGSHSQSATTNALELRSScrpsgaslrgdpkctrtndakifdgpfsfprqprsvrqkvhls
MLIHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGICESYFEdpafdggdgpcfgpfngTVDAVGLSNWSYPSGTQAGSSFQVFDAVSNVSDVFVDLDHPSVACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLIDISEQLIENTLPFVREDPSIGHFVPSQPTALFSESNSGNYTSENWISLRLGSTCADTGSHSQSATTNALELRSSCRPSGASLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
**IHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEW**************************GQTIIARIKKNLSANVDVSKYWS****************************************************RIDPIFGTGNQTDGLIGDTDIIVL*************************PDGICESYFEDPAFDGGDGPCFGPFNGTVDAVGLSNWSYPSGTQAGSSFQVFDAVSNVSDVFVDLDHPSVACSLPMNGY******TLTCDSGVLDSPVCHSNIDIGEQLIDISEQLIENTLPFVREDPSIGHFV******************ENWISLRLG******************************************************************
***HVLNLQGKLVNFRMKELKDVLT**************DRIFHQLSDEGVARIID********************************************CPCGTSLPSESKIQCVDPRCLVQQHISC****************LFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTV*************DDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLV************LTRVRR****************EIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDGSWR***********************************************************************************************************************************************************************************************VDAV***********************SNVSDVF****************************************************QLIENTLPFVREDPSIGHFV*******************NWISLRL***********************************************************V**KVHL*
MLIHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITM********************NSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGICESYFEDPAFDGGDGPCFGPFNGTVDAVGLSNWSYPSGTQAGSSFQVFDAVSNVSDVFVDLDHPSVACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLIDISEQLIENTLPFVREDPSIGHFVPSQPTALFSESNSGNYTSENWISLRLGSTC*******************************PKCTRTNDAKIFDGPFSFPRQ***********
MLIHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQI******************************LGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVA***EDGDSDLEIIADSIIVNLRCPKVFSEEN******GIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSK******************************************************HRIDPIFG*********GDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGICESYFEDPAFDGGDGPCFGPFNGTVDAVGLSNWSYPSGTQAGSSFQVFDAVSNVSDVFVDLDHPSVACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLIDISEQLIENTLPFVREDPSIGHFVPSQPTAL*S******YTSENWISLRLG******************************************************************
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MLIHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYSFILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVSKYWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDIPHRIDPIFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPIDSAPDGICESYFEDPAFDGGDGPCFGPFNGTVDAVGLSNWSYPSGTQAGSSFQVFDAVSNVSDVFVDLDHPSVACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLIDISEQLIENTLPFVREDPSIGHFVPSQPTALFSESNSGNYTSENWISLRLGSTCADTGSHSQSATTNALELRSSCRPSGASLRGDPKCTRTNDAKIFDGPFSFPRQPRSVRQKVHLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query848 2.2.26 [Sep-21-2011]
Q680Q4884 E3 SUMO-protein ligase SI yes no 0.930 0.892 0.433 1e-176
Q6L4L4875 E3 SUMO-protein ligase SI yes no 0.935 0.906 0.399 1e-162
Q6ASW7813 E3 SUMO-protein ligase SI no no 0.775 0.809 0.392 1e-128
Q6AZ28572 E3 SUMO-protein ligase PI no no 0.444 0.659 0.233 0.0007
>sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2 Back     alignment and function desciption
 Score =  620 bits (1598), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 395/911 (43%), Positives = 514/911 (56%), Gaps = 122/911 (13%)

Query: 7   NLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDE---------------GV 51
           N + KL  FR+KELKDVLT+LGL KQGKKQ+LVDRI   LSDE                V
Sbjct: 6   NCKEKLSYFRIKELKDVLTQLGLSKQGKKQELVDRILTLLSDEQAARLLSKKNTVAKEAV 65

Query: 52  ARIIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPSES 111
           A+++DDTYRKMQ+S A+DLA  GQ   D  N+KV+ E ED      K+ C CG SL ++S
Sbjct: 66  AKLVDDTYRKMQVSGASDLASKGQVSSDTSNLKVKGEPEDPFQPEIKVRCVCGNSLETDS 125

Query: 112 KIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSPMK 171
            IQC DPRC V QH+ CVI+P+KPM+    LP  F+CE CR+ RADPFW+TVAH +SP++
Sbjct: 126 MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTRADPFWVTVAHPLSPVR 185

Query: 172 LVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAE 231
           L A+ IP DG + +Q  E  F +T+A  DLL   EYDVQAWC+LLNDKV FRMQWP +A+
Sbjct: 186 LTATTIPNDGASTMQSVERTFQITRADKDLLAKPEYDVQAWCMLLNDKVLFRMQWPQYAD 245

Query: 232 LQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLVKR 291
           LQVNG+ VR +NRPG QLLG NGRDDG +IT  I +GVN+ISLSG D+R FCFGVRLVKR
Sbjct: 246 LQVNGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCFGVRLVKR 305

Query: 292 QTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATG-NEDGDSDLEIIADSIIVNLRCPK 350
           +T+ QVL+L+P+E  GE FEDAL RVRRC GG     N D DSD+E++AD   VNLRCP 
Sbjct: 306 RTLQQVLNLIPEEGKGETFEDALARVRRCIGGGGGDDNADSDSDIEVVADFFGVNLRCP- 364

Query: 351 VFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELN 410
                                         MSGSRI+VAGRF PCVH GCFDL+ FVELN
Sbjct: 365 ------------------------------MSGSRIKVAGRFLPCVHMGCFDLDVFVELN 394

Query: 411 QRTRKASYSFILLFLSMFRI-----FKLIKVGKMRNFADDLTEIEVKHDGSWRVKCKGEN 465
           QR+RK      L   S+  +     F  I   KM++  +++TEIEVK DGSWRVK K E+
Sbjct: 395 QRSRKWQCPICLKNYSVEHVIVDPYFNRI-TSKMKHCDEEVTEIEVKPDGSWRVKFKRES 453

Query: 466 -----NNLAEWHSPDGSTYAARSEVVSNSETKQLVNSGQT-----IIARIKKNLSANVDV 515
                  L++WH+PDGS   +  ++    E   +   G +     +   I+KN +   +V
Sbjct: 454 ERRELGELSQWHAPDGSLCPSAVDIKRKMEMLPVKQEGYSDGPAPLKLGIRKNRNGIWEV 513

Query: 516 SK-----YWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQDTNSRKDLNDI 570
           SK       S++  + + Y  +N    II MSSSA+G  RD +D +VNQD     D    
Sbjct: 514 SKPNTNGLSSSNRQEKVGYQEKN----IIPMSSSATGSGRDGDDASVNQDAIGTFDFVAN 569

Query: 571 PHRIDPI---------FGTGNQTDGLIGDTDIIVLSDSEEDNDH-LAPSTSYQSYH---- 616
              +D I         F   NQ+ G  G+ ++IVLSDS+++ND  + P  +Y        
Sbjct: 570 GMELDSISMNVDSGYNFPDRNQS-GEGGNNEVIVLSDSDDENDLVITPGPAYSGCQTDGG 628

Query: 617 ---PIDSAPDGICESYFEDPAFDGGDGPCFGPFNGTVDAVGLSNWSYPSGTQAGSSFQVF 673
              P++  P GI  SY EDP    G     G FN   D      WS+PS T     FQ+F
Sbjct: 629 LTFPLN--PPGIINSYNEDPHSIAGGSSGLGLFNDD-DEFDTPLWSFPSETPEAPGFQLF 685

Query: 674 DAVSNVSDVFVDLDHPS-VACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLID 732
            + ++VS   V L H S + CS  +NG       T+  ++ +   PV   +    E    
Sbjct: 686 RSDADVSGGLVGLHHHSPLNCSPEING-----GYTMAPETSMASVPVVPGSTGRSE---- 736

Query: 733 ISEQLIENTLPFVREDPSIGHFVPSQPTALFSES------NSGNYTSENWISLRLGSTCA 786
            ++ L++N L F R+DPS+  F+P++P A            S    SE+WISLRLG +  
Sbjct: 737 ANDGLVDNPLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWISLRLGDSA- 795

Query: 787 DTGSHSQSATTNAL---------ELRSSCRPSGASLRGDPKCTRTNDAKI--FDGPFSFP 835
            +G+H   ATTN +         E         ASL      +R + AK    D PFSFP
Sbjct: 796 -SGNHGDPATTNGINSSHQMSTREGSMDTTTETASLLLGMNDSRQDKAKKQRSDNPFSFP 854

Query: 836 RQPRSVRQKVH 846
           RQ RS  ++ H
Sbjct: 855 RQKRSNNEQDH 865
E3 SUMO protein ligase involved in regulation processes. Mediates SUMO/ attachment to PHR1, a MYB transcriptional activator controlling the phosphate deficiency responses. Functions as an upstream negative regulator of salicylic acid (SA) accumulation and subsequent SA-mediated systemic acquired resistance (SAR) signaling. Probably not involved in jasmonic acid (JA)-mediated defense response. Participates in abiotic stress-induced sumoylation. Controls heat shock-induced SUMO1 and SUMO2 conjugation and facilitates basal thermotolerance. Involved in freezing tolerance by mediating sumoylation of ICE1, a transcription activator of the cold signaling regulator CBF3/DREB1A. Acts as positive regulator of drought stress tolerance. Acts as floral repressor that promotes FLC expression by repressing FLD activity through sumoylation. Acts as negative regulator of abscisic acid (ABA) signaling through ABI5 sumoylation. Mediates sumoylation of SCE1, GTE3 and GTE5.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q6L4L4|SIZ1_ORYSJ E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ASW7|SIZ2_ORYSJ E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1 Back     alignment and function description
>sp|Q6AZ28|PIAS2_RAT E3 SUMO-protein ligase PIAS2 OS=Rattus norvegicus GN=Pias2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query848
225435251876 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.942 0.912 0.450 0.0
255570825876 sumo ligase, putative [Ricinus communis] 0.938 0.908 0.437 0.0
449459066869 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.937 0.914 0.442 0.0
356543432882 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.938 0.902 0.424 1e-178
297793601898 ATSIZ1/SIZ1 [Arabidopsis lyrata subsp. l 0.928 0.876 0.434 1e-177
42573746885 E3 SUMO-protein ligase SIZ1 [Arabidopsis 0.932 0.893 0.435 1e-177
30697367873 E3 SUMO-protein ligase SIZ1 [Arabidopsis 0.932 0.906 0.435 1e-177
62319138885 putative protein [Arabidopsis thaliana] 0.932 0.893 0.435 1e-177
356543434895 PREDICTED: E3 SUMO-protein ligase SIZ1-l 0.938 0.889 0.418 1e-176
357472339882 E3 SUMO-protein ligase SIZ1 [Medicago tr 0.944 0.908 0.424 1e-176
>gi|225435251|ref|XP_002284945.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/912 (45%), Positives = 539/912 (59%), Gaps = 113/912 (12%)

Query: 5   VLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEGVAR----------- 53
           V + + KL  FR+KELKDVLT+LGL KQGKKQDLVDRI   LSDE V+R           
Sbjct: 4   VTSCKDKLAYFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDEQVSRMWAKKNAVGKE 63

Query: 54  ----IIDDTYRKMQISEAADLAIMGQSGLDICNVKVEMEAEDSLNLGGKIFCPCGTSLPS 109
               +++DTYRKMQ+S A DLA  GQ   D  NVK + E EDS N   KI CPCG++LP+
Sbjct: 64  EVAKLVEDTYRKMQVSGATDLASKGQVLSDSSNVKFKEELEDSYN-DMKIRCPCGSALPN 122

Query: 110 ESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFFCETCRIKRADPFWITVAHLVSP 169
           E+ ++C D +C V QHI CVIIPEK ME I   P  F+CE CR+ RADPFW+TVAH + P
Sbjct: 123 ETMLKCDDLKCQVWQHIGCVIIPEKTMEGIPPTPDPFYCEICRLSRADPFWVTVAHPLLP 182

Query: 170 MKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNTEYDVQAWCILLNDKVSFRMQWPLH 229
           +KL  ++IPTDGTNP+Q  E  FHLT+A  D++   EYDVQAWCILLNDKVSFRMQWP +
Sbjct: 183 VKLTTTSIPTDGTNPVQSVEKTFHLTRADRDMVSKHEYDVQAWCILLNDKVSFRMQWPQY 242

Query: 230 AELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGVNQISLSGCDIRNFCFGVRLV 289
           A+LQVNG+ VR +NRPG+QLLG+NGRDDG +IT    +G+N+ISL+GCD R FC GVR+V
Sbjct: 243 ADLQVNGMAVRAINRPGSQLLGANGRDDGPVITPCTKDGINKISLTGCDARIFCLGVRIV 302

Query: 290 KRQTVAQVLSLVPKETAGEVFEDALTRVRRCF-GGVATGNEDGDSDLEIIADSIIVNLRC 348
           KR+TV Q+LSL+PKE+ GE FEDAL RVRRC  GG AT N D DSDLE++AD   VNLRC
Sbjct: 303 KRRTVQQILSLIPKESDGERFEDALARVRRCIGGGGATDNADSDSDLEVVADFFTVNLRC 362

Query: 349 PKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVE 408
           P                               MSGSR++VAGRFKPC H GCFDLE FVE
Sbjct: 363 P-------------------------------MSGSRMKVAGRFKPCAHMGCFDLEIFVE 391

Query: 409 LNQRTRKASYSFILLFLSMFRI-----FKLIKVGKMRNFADDLTEIEVKHDGSWRVKCKG 463
           +NQR+RK      L   S+  +     F  I    M++  +D+TEI+VK DG WRVK + 
Sbjct: 392 MNQRSRKWQCPICLKNYSLENVIIDPYFNRI-TSSMQSCGEDVTEIQVKPDGCWRVKPEN 450

Query: 464 ENNNLAEWHSPDGS-------TYAARSEVVSNSETKQLVNSGQTIIARIKKNLSANVDVS 516
           E   LA+WH+ DG+        +  + +V+   + + +     ++  +I KN +   +VS
Sbjct: 451 ERGILAQWHNADGTLCPLAEGEFKPKMDVLKQIKQEGISECHSSLKLQI-KNRNGVWEVS 509

Query: 517 K--YWSTSPNKHMSYHVENNSEKIITMSSSASGCSRDEEDPTVNQD--------TNSRKD 566
           K    +T     +    E+  +++I MSSSA+G  RD EDP+VNQD        TN   +
Sbjct: 510 KPDEMNTLTCNRLQEKFEDPGQQVIPMSSSATGSGRDGEDPSVNQDGGGNYDFSTNPGIE 569

Query: 567 LNDIPHRIDP---IFGTGNQTDGLIGDTDIIVLSDSEEDNDHLAPSTSYQSYHPID---- 619
           L+ I   ID     F   N T   +GDT++IVLSDSEE+ND L  S +  +    D    
Sbjct: 570 LDSISLNIDNNAYAFPERN-TPAPMGDTELIVLSDSEEENDTLMSSGTLYNNSRADAGGI 628

Query: 620 --SAPDGICESYFEDPAFDGGDGPCFGPFNGTVDAVGLSN--WSYPSGTQAGSSFQVFDA 675
             S P GI +SY EDP    G   C G F+   D  G+S   W  P GTQ G  FQ F  
Sbjct: 629 NFSIPTGIPDSYAEDPTAGPGGSSCLGLFSTADDDFGMSGSLWPLPPGTQPGPGFQFFGT 688

Query: 676 VSNVSDVFVDLDHPSVACSLPMNGYKSPSKSTLTCDSGVLDSPVCHSNIDIGEQLIDISE 735
            ++VSD   DL H  + C   MNGY      TL  +  V+ S     +  IG    D+++
Sbjct: 689 DTDVSDALADLQHNPINCPTSMNGY------TLGPEV-VMGSAALVPDPSIGRTDTDMND 741

Query: 736 QLIENTLPFVREDPSIGHFVPSQ------PTALFSESNSGNYTS-ENWISLRLGSTCADT 788
            L++N L F  +DPS+  F+P++      PT L ++++  N +  ++WISLRLG +   +
Sbjct: 742 GLVDNPLAFGGDDPSLQIFLPTRPSDASVPTDLRNQADVSNGSRPDDWISLRLGGS---S 798

Query: 789 GSHSQSATTNALELRS----------SCRPSGASLRG--DPKCTRTNDAKIFDGPFSFPR 836
           G H++S   N L  R           S   + + L G  D +  +T+  +  D PFSFPR
Sbjct: 799 GGHAESPAANGLNTRQQLPSKDGDMDSLADTASLLLGMNDGRSDKTSSRQRSDSPFSFPR 858

Query: 837 QPRSVRQKVHLS 848
           Q RSVR +++LS
Sbjct: 859 QRRSVRPRLYLS 870

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255570825|ref|XP_002526365.1| sumo ligase, putative [Ricinus communis] gi|223534324|gb|EEF36036.1| sumo ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449459066|ref|XP_004147267.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] gi|449511458|ref|XP_004163961.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543432|ref|XP_003540164.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297793601|ref|XP_002864685.1| ATSIZ1/SIZ1 [Arabidopsis lyrata subsp. lyrata] gi|297310520|gb|EFH40944.1| ATSIZ1/SIZ1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42573746|ref|NP_974969.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gi|186532611|ref|NP_001119465.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gi|332009941|gb|AED97324.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gi|332009945|gb|AED97328.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30697367|ref|NP_200849.2| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gi|9757744|dbj|BAB08225.1| unnamed protein product [Arabidopsis thaliana] gi|22654962|gb|AAM98074.1| AT5g60420/muf9_70 [Arabidopsis thaliana] gi|28416515|gb|AAO42788.1| AT5g60420/muf9_70 [Arabidopsis thaliana] gi|51339279|gb|AAU00414.1| SUMO E3 ligase [Arabidopsis thaliana] gi|62319933|dbj|BAD94016.1| putative protein [Arabidopsis thaliana] gi|332009942|gb|AED97325.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|62319138|dbj|BAD94301.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356543434|ref|XP_003540165.1| PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357472339|ref|XP_003606454.1| E3 SUMO-protein ligase SIZ1 [Medicago truncatula] gi|355507509|gb|AES88651.1| E3 SUMO-protein ligase SIZ1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query848
ZFIN|ZDB-GENE-080220-271068 zmiz1a "zinc finger, MIZ-type 0.175 0.139 0.278 8.2e-05
UNIPROTKB|I3L8P9943 I3L8P9 "Uncharacterized protei 0.175 0.158 0.272 0.00021
UNIPROTKB|I3LDU8985 I3LDU8 "Uncharacterized protei 0.175 0.151 0.272 0.00023
UNIPROTKB|I3LJD11021 ZMIZ1 "Uncharacterized protein 0.175 0.145 0.272 0.00061
UNIPROTKB|Q9ULJ61067 ZMIZ1 "Zinc finger MIZ domain- 0.175 0.139 0.272 0.0007
UNIPROTKB|E2RGZ01072 ZMIZ1 "Uncharacterized protein 0.175 0.138 0.272 0.00072
UNIPROTKB|F1S2E41072 ZMIZ1 "Uncharacterized protein 0.175 0.138 0.272 0.00072
MGI|MGI:30406931072 Zmiz1 "zinc finger, MIZ-type c 0.175 0.138 0.272 0.00072
RGD|13116201072 Zmiz1 "zinc finger, MIZ-type c 0.175 0.138 0.272 0.00072
ZFIN|ZDB-GENE-080220-27 zmiz1a "zinc finger, MIZ-type containing 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 115 (45.5 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
 Identities = 47/169 (27%), Positives = 78/169 (46%)

Query:   192 FHLTKA-HSDLLQNTEYDVQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLL 250
             FHL  + H  L+  ++ ++Q  C    D+      WP   ++ VN   + T+ R      
Sbjct:   590 FHLRPSVHQTLMWRSDLELQFKCYHHEDR-QMNTNWPASVQVSVNATPL-TIER------ 641

Query:   251 GSNGRDDGALITLYI---GEGVNQISLSGCDIRNFCFGVRLVKRQTVAQVLSLVPKETAG 307
             G N      L   ++   G    QI+++ C   +  F ++LV R +V  VL  + K+   
Sbjct:   642 GDNKTSHKPLHLKHVCQPGRNTIQITVTACCCSHL-FVLQLVHRPSVRSVLQGLLKKRLL 700

Query:   308 EVFEDALTRVRRCFGGVA--TGNE--DGDSDLEIIADSIIVNLRCPKVF 352
                E  +T+++R F  VA  TGN   +G+  +E  A  I V+L+CP  F
Sbjct:   701 PA-EHCITKIKRNFSSVAASTGNATLNGEDGVEQTA--IKVSLKCPITF 746
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|I3L8P9 I3L8P9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDU8 I3LDU8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LJD1 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULJ6 ZMIZ1 "Zinc finger MIZ domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ0 ZMIZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2E4 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:3040693 Zmiz1 "zinc finger, MIZ-type containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311620 Zmiz1 "zinc finger, MIZ-type containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q680Q4SIZ1_ARATH6, ., 3, ., 2, ., -0.43350.93040.8925yesno
Q6L4L4SIZ1_ORYSJ6, ., 3, ., 2, ., -0.39950.93510.9062yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024500001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (885 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015320001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (647 aa)
    • • 0.514
GSVIVG00002215001
SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (245 aa)
    •   0.412

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query848
pfam0289150 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger 5e-07
pfam0203735 pfam02037, SAP, SAP domain 5e-07
smart0051335 smart00513, SAP, Putative DNA-binding (bihelical) 2e-05
>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger Back     alignment and domain information 
 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 373 LFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTR 414
           + L C   +S  RI +  R + C H  CFDL +F+E N+RT 
Sbjct: 1   VSLKC--PISYLRISIPVRGRFCKHIQCFDLLSFLESNERTP 40

This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation. Length = 50
>gnl|CDD|202100 pfam02037, SAP, SAP domain Back     alignment and domain information
>gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 848
KOG2169636 consensus Zn-finger transcription factor [Transcri 100.0
PF14324144 PINIT: PINIT domain; PDB: 3I2D_A. 99.75
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 99.64
PF0203735 SAP: SAP domain; InterPro: IPR003034 The SAP (afte 98.04
KOG2169636 consensus Zn-finger transcription factor [Transcri 97.94
smart0051335 SAP Putative DNA-binding (bihelical) motif predict 97.89
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 96.57
KOG1973274 consensus Chromatin remodeling protein, contains P 96.18
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 95.9
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 93.99
KOG1844508 consensus PHD Zn-finger proteins [General function 93.14
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 93.1
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 88.13
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 85.87
PF0749843 Rho_N: Rho termination factor, N-terminal domain; 83.65
>KOG2169 consensus Zn-finger transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-39  Score=370.78  Aligned_cols=358  Identities=20%  Similarity=0.310  Sum_probs=262.4

Q ss_pred             hhcCHHHHHHHH-HHcCCCCCC--CHHHHHHHHHHhcCchh---HHHHHHHHHHhh-c--cccchhhhhhcCCCCCcccc
Q 003096           13 VNFRMKELKDVL-TKLGLPKQG--KKQDLVDRIFHQLSDEG---VARIIDDTYRKM-Q--ISEAADLAIMGQSGLDICNV   83 (848)
Q Consensus        13 ~sFRV~ELk~lL-~~lGl~KsG--rKqEL~dRil~lL~~~~---v~~~I~elYrk~-q--~~~~~~~a~~~q~~~~~s~v   83 (848)
                      +++||+||+.++ ++.++.+.|  +|++|+-|++.++...+   ++++|+++|++. .  ...+.++..+.    ..   
T Consensus         1 m~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~q~~i~~~~~~~~~~~~~~~~~~~~~~----~~---   73 (636)
T KOG2169|consen    1 MSLRVSSLQVLLSGAIGRSFPGQVNKHKLAPRALTLVGSGCKPYLQMVIKELYQRQYPNGQQQPIDLPAVK----LH---   73 (636)
T ss_pred             CCcccccccccchhhhccccccccchhhhhhhhhcccccCCchhhhhhhhhhhhhhccccccccccccccc----cC---
Confidence            468999999999 778999999  99999999999999886   689999999853 1  11111211111    00   


Q ss_pred             ccccccccccCCCCccccCCCCCCCCCCceeeCCCccccccccccccCCCCcccc--ccCCCCcccccccccccCCchhh
Q 003096           84 KVEMEAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEE--IRLLPPLFFCETCRIKRADPFWI  161 (848)
Q Consensus        84 ~~~~~~~~~~~~~~~vRCiCGSSl~s~~mIQC~~~~C~v~QH~sCv~Ip~Kp~~~--ipvhPdvFyCe~CRLKr~dPFy~  161 (848)
                       +.      ..        ++.....          |....|..-..++...+.+  -+.+|++      ||++ .|||+
T Consensus        74 -~~------~~--------~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~------~~~~-~~~y~  121 (636)
T KOG2169|consen   74 -PN------VV--------PPFYPLL----------WQLLRHPTQQPVTPSSLLGPPLPFHPDV------KLKK-LPFYD  121 (636)
T ss_pred             -Cc------cc--------Cccccch----------hcccccCCCCCCCcccccCCCCcCCCcc------cccC-Cchhe
Confidence             00      00        0000000          0111111100111111111  1357888      7885 99999


Q ss_pred             hhhhccCceEeeeccCCCCCCCCCceeEEEEEeCHhhHHhhcC---------CCcEEEEEEEecCCCccccccCCCceEE
Q 003096          162 TVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQN---------TEYDVQAWCILLNDKVSFRMQWPLHAEL  232 (848)
Q Consensus       162 ~i~~Ll~P~~L~~s~i~~dG~~~~Q~~e~~F~LT~~q~~lL~~---------~~y~vQlrCi~l~d~v~~~~~wP~~~el  232 (848)
                      ++..+++|+.+..+..+     +++...+.|+||++++..+..         .++.+   |+. +..++++.+||.+..+
T Consensus       122 ~l~~~~~p~~~~~~~~~-----~~~~~~~~f~lt~~~~~~i~~~~~~~~~~k~~~~~---~~~-~~s~p~e~~~p~~~~~  192 (636)
T KOG2169|consen  122 VLSELIKPHVLHSSNSP-----SLSESPFLFALTPEQVSGISSRPDVLPGSKSEGSV---CLM-ETSCPQEDHFPPNVQV  192 (636)
T ss_pred             ecccccCceeecCcCCC-----Ccccccchhhcchhhhhhcccccccccccccccce---eec-cccCccccccCceeEE
Confidence            99999999999876542     566778899999999875531         22333   555 6678899999999999


Q ss_pred             EEcCeEeeecc--CCCcccCCCCCCCCCCc-ccc--cccCc-ccEEEEEEe--ecceEEEEEEEEeecCHHHHHHhcccC
Q 003096          233 QVNGLLVRTVN--RPGTQLLGSNGRDDGAL-ITL--YIGEG-VNQISLSGC--DIRNFCFGVRLVKRQTVAQVLSLVPKE  304 (848)
Q Consensus       233 ~VNg~~v~~~~--RPg~~~~g~ngR~d~pi-IT~--~i~~g-~N~I~is~~--d~r~y~~~V~LVk~~t~eqll~~I~~~  304 (848)
                      +||+..+.+..  -|.....-+.+|...|. ||.  ++..- .|.+.+.|.  ..+.|.+++|+|+.+|.++||++++..
T Consensus       193 ~vn~~~~~l~~~~~~~n~~~~~~~~~~~P~n~t~~~~~~~~~~~~~~~~~~~~~~~~ysl~~~~v~~~t~~~llq~~~~~  272 (636)
T KOG2169|consen  193 KVNNSPCQLPFGYMPNNKHGLEPKRPSRPGNITSLSRLSVTTPNQITVLWTAQGGKSYSLSVYFVEGLTSKDLLQRLKQN  272 (636)
T ss_pred             EecCCcceeeccccCCCCcccccCCCCCCCcCcccccccccccccceEEEEeccCcccceEEEEecccCHHHHHHHHhcc
Confidence            99999998541  11111112235777788 999  44444 488998885  579999999999999999999999875


Q ss_pred             CCC-CChHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEEecCCCCcccccccccccCcCcccccchhhccccccccc
Q 003096          305 TAG-EVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSG  383 (848)
Q Consensus       305 ~~g-~~~edal~rIkr~l~~~~~~n~d~D~DlEIv~~s~~VSL~CP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~  383 (848)
                      .+. ..++.+++.|++.+        .+++|.||++++++|||.||                               |++
T Consensus       273 ~~~~~~~~~s~~~~~~~l--------~~~~d~~i~tt~~~vSL~CP-------------------------------l~~  313 (636)
T KOG2169|consen  273 GKINRNLSQSDALIKKKL--------TAGPDSEIATTSLRVSLNCP-------------------------------LSK  313 (636)
T ss_pred             CCccCchhHhHHHhhccc--------ccCCcccceeccceeEecCC-------------------------------ccc
Confidence            332 23466777777443        44566689999999999999                               999


Q ss_pred             cceeccccccCcCcccccCHHHHHHHhcCCCCceee-------cchhhhhhhHHHHHHHhhhhhcCCCCeeEEEEccCCc
Q 003096          384 SRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYS-------FILLFLSMFRIFKLIKVGKMRNFADDLTEIEVKHDGS  456 (848)
Q Consensus       384 ~RI~vP~Rg~~C~HlQCFDLetFL~mNer~~tW~C~-------~~~L~l~ID~yf~~IL~s~l~~~~~dv~eIev~~DGS  456 (848)
                      +||++|||+..|+|+|||||.+||+||++++||+|+       |++|+  ||+||..||    .++..+++||++.+||+
T Consensus       314 ~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~--iD~~~~~iL----~~~~~~~~ev~~~~dGs  387 (636)
T KOG2169|consen  314 MRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI--IDGYFLNIL----QSCQANVEEVEVSEDGS  387 (636)
T ss_pred             ceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchh--hhHHHHHHH----hhccCCCcceEecCCCc
Confidence            999999999999999999999999999999999984       88899  999999999    67888899999999999


Q ss_pred             EEEeecC
Q 003096          457 WRVKCKG  463 (848)
Q Consensus       457 W~v~~~~  463 (848)
                      |++...+
T Consensus       388 w~pi~~~  394 (636)
T KOG2169|consen  388 WKPIPEE  394 (636)
T ss_pred             eecCccc
Confidence            9966544

>PF14324 PINIT: PINIT domain; PDB: 3I2D_A Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis [] Back     alignment and domain information
>KOG2169 consensus Zn-finger transcription factor [Transcription] Back     alignment and domain information
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query848
2rno_A110 Solution Structure Of The N-Terminal Sap Domain Of 1e-16
2rsd_A68 Solution Structure Of The Plant Homeodomain (Phd) O 6e-12
1wew_A78 Solution Structure Of Phd Domain In Dna-Binding Fam 6e-12
>pdb|2RNO|A Chain A, Solution Structure Of The N-Terminal Sap Domain Of Sumo E3 Ligases From Oryza Sativa Length = 110 Back     alignment and structure 
Iteration: 1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 56/93 (60%), Gaps = 17/93 (18%)
Query: 11  KLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSD-----------------EGVAR 53
           KL  FR+KELKD+L +LGLPKQGKKQDL+DR+   L+D                 E VA+
Sbjct: 16  KLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAK 75
Query: 54  IIDDTYRKMQISEAADLAIMGQSGLDICNVKVE 86
           I+DDTYRKMQI  A DLA    SG D     +E
Sbjct: 76  IVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIE 108
>pdb|2RSD|A Chain A, Solution Structure Of The Plant Homeodomain (Phd) Of The E3 Sumo Ligase Siz1 From Rice Length = 68 Back     alignment and structure
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family Protein Aam98074 Length = 78 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query848
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 2e-33
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 4e-30
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 1e-23
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 2e-17
1wew_A78 DNA-binding family protein; structural genomics, P 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3o70_A68 PHD finger protein 13; PHF13, structural genomics 2e-07
1wem_A76 Death associated transcription factor 1; structura 7e-07
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 1e-05
1v66_A65 Protein inhibitor of activated STAT protein 1; fou 1e-04
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 1e-04
1wee_A72 PHD finger family protein; structural genomics, PH 1e-04
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 3e-04
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371 Back     alignment and structure
 Score =  132 bits (332), Expect = 2e-33
 Identities = 56/352 (15%), Positives = 124/352 (35%), Gaps = 72/352 (20%)

Query: 155 RADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQNT--EYDVQAW 212
           +  PF+  +  L+         +  + T       A F L+KA  +LL N   ++ +  +
Sbjct: 69  KESPFY-KIQRLIPE-----LVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRLYLF 122

Query: 213 CIL---LNDKVSFRMQWPLHAELQVNGLLVRTVNRPGTQLLGSNGRDDGALITLYIGEGV 269
             +   L  + +  +Q+P   EL+ N + ++   R      G+    D   +T ++    
Sbjct: 123 SGMINPLGSRGNEPIQFPFPNELRCNNVQIKDNIRGFKSKPGTAKPAD---LTPHLKPYT 179

Query: 270 NQISLS---GCDIRNFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVAT 326
            Q ++        + +     +V+  T  Q+L  V +       +  L  +++       
Sbjct: 180 QQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHPKII-KQATLLYLKKTL----- 233

Query: 327 GNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVLLFGIPFDCTFHWLFLTCNWQMSGSRI 386
                D ++ +   S I++L+CP                               +S +R+
Sbjct: 234 ---REDEEMGLTTTSTIMSLQCP-------------------------------ISYTRM 259

Query: 387 RVAGRFKPCVHTGCFDLETFVELNQRTRK-------ASYSFILLFLSMFRIFKLIKVGKM 439
           +   +   C H  CFD   F+    +             +   L +S F     I    +
Sbjct: 260 KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEF--VDDI----L 313

Query: 440 RNFADDLTEIEVKHDGSWRVKCKGENNNLAEWHSPDGSTYAARSEVVSNSET 491
           +N   ++ ++E+  DG W    + ++++  +  S DGS    +  +   +  
Sbjct: 314 QNCQKNVEQVELTSDGKWTAILEDDDDS--DSDSNDGSRSPEKGTLGEGAAA 363
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Length = 360 Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Length = 110 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 Length = 65 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Length = 114 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query848
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 100.0
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 100.0
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 99.83
1v66_A65 Protein inhibitor of activated STAT protein 1; fou 99.73
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 98.88
1wew_A78 DNA-binding family protein; structural genomics, P 98.69
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 98.26
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 97.77
3o70_A68 PHD finger protein 13; PHF13, structural genomics 97.76
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 97.76
2do1_A55 Nuclear protein HCC-1; SAP domain, structural geno 97.71
1zrj_A50 E1B-55KDA-associated protein 5 isoform C; SAP doma 97.63
1wee_A72 PHD finger family protein; structural genomics, PH 97.61
1wem_A76 Death associated transcription factor 1; structura 97.54
1h1j_S51 THO1 protein; SAP domain, DNA binding; NMR {Saccha 97.47
2kvu_A75 MKL/myocardin-like protein 1; SAP motif, DNA/RNA b 97.45
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 97.42
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 97.37
1we9_A64 PHD finger family protein; structural genomics, PH 97.23
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 97.14
1weu_A91 Inhibitor of growth family, member 4; structural g 97.0
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 96.71
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 96.13
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 96.11
3kv5_D488 JMJC domain-containing histone demethylation prote 96.11
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 96.08
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 95.93
2k16_A75 Transcription initiation factor TFIID subunit 3; p 95.91
1x4i_A70 Inhibitor of growth protein 3; structural genomics 95.78
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 95.76
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 95.7
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 95.27
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 94.51
2jx3_A131 Protein DEK; alpha helix, SAF/SAP motif, DNA bindi 92.58
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 92.57
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 91.2
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 90.87
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 85.28
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 80.71
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
Probab=100.00  E-value=2.1e-53  Score=458.51  Aligned_cols=282  Identities=25%  Similarity=0.343  Sum_probs=207.6

Q ss_pred             cCCCCcccccccccccCCchhhhhhhccCceEeeeccCCCCCCCCCceeEEEEEeCHhhHHhhcC---------CCcE--
Q 003096          140 RLLPPLFFCETCRIKRADPFWITVAHLVSPMKLVASNIPTDGTNPLQKAEAAFHLTKAHSDLLQN---------TEYD--  208 (848)
Q Consensus       140 pvhPdvFyCe~CRLKr~dPFy~~i~~Ll~P~~L~~s~i~~dG~~~~Q~~e~~F~LT~~q~~lL~~---------~~y~--  208 (848)
                      ++||++      +||+ +|||+++++|++|+.|.+++     ++++|+..+.|+||++|+..+..         .+|+  
T Consensus        13 ~~~~~~------~~k~-lPFy~v~~~l~~Pt~L~~~~-----~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vq   80 (360)
T 4fo9_A           13 NLYFQG------QLKN-LPFYDVLDVLIKPTSLVQSS-----IQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQ   80 (360)
T ss_dssp             ----CC------CBCC-CTTEEEEEEEEEEEECCCCS-----SCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEE
T ss_pred             ccCCCc------eecC-CCchHhHhhhcCceeccccc-----CcccccceeEEEcCHHHHHHHhhccccccccccceeEE
Confidence            689999      8995 99999999999999998754     35899999999999999987753         3454  


Q ss_pred             EEEEEEecCCCccccccCCCceEEEEcCeEeeeccC-CCcccCC-CCCCCCCCc-ccccccCc---ccEEEEEEe-e-cc
Q 003096          209 VQAWCILLNDKVSFRMQWPLHAELQVNGLLVRTVNR-PGTQLLG-SNGRDDGAL-ITLYIGEG---VNQISLSGC-D-IR  280 (848)
Q Consensus       209 vQlrCi~l~d~v~~~~~wP~~~el~VNg~~v~~~~R-Pg~~~~g-~ngR~d~pi-IT~~i~~g---~N~I~is~~-d-~r  280 (848)
                      ||+|-+.+++.+++++.||.+++|+|||+.|+.... |. ...| +++|.++|+ ||.+++.+   .|+|+|+|. + .+
T Consensus        81 vqlRfC~~~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~-~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~  159 (360)
T 4fo9_A           81 VQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPP-PKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGK  159 (360)
T ss_dssp             EEEEEEEC-C-CCBCCBCCTTCEEEETTEEECCCC---------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTB
T ss_pred             EEEEEEEccCCCcccccCCCceEEEECCEEccCCCCCCC-cccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCc
Confidence            455534447889999999999999999999995421 21 2223 345677888 99999988   599999996 3 68


Q ss_pred             eEEEEEEEEeecCHHHHHHhcccCCCCCChHHHHHHHHHhhCCccCCCCCCCCCceeeeeceEEEecCCCCccccccccc
Q 003096          281 NFCFGVRLVKRQTVAQVLSLVPKETAGEVFEDALTRVRRCFGGVATGNEDGDSDLEIIADSIIVNLRCPKVFSEENSDVL  360 (848)
Q Consensus       281 ~y~~~V~LVk~~t~eqll~~I~~~~~g~~~edal~rIkr~l~~~~~~n~d~D~DlEIv~~s~~VSL~CP~~~~~~~~~~~  360 (848)
                      .|+|+|||||++|+++|+++|+++ .....++++++||+.+..        |+|+||++++++|||+||           
T Consensus       160 ~y~l~V~lV~~~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~~--------d~DddI~~~~~~vSL~CP-----------  219 (360)
T 4fo9_A          160 NYSMSVYLVRQLTSAMLLQRLKMK-GIRNPDHSRALIKEKLTA--------DPDSEIATTSLRVSLMCP-----------  219 (360)
T ss_dssp             CEEEEEEEEEECCHHHHHHHHHTC--CBCHHHHHHHHHHHHC-----------------CCEEEESBCT-----------
T ss_pred             eEEEEEEEEEeCCHHHHHHHHHhc-CCCCHHHHHHHHHHHhcc--------CCccceeeeeeEEeeeCC-----------
Confidence            999999999999999999999873 345677899999998852        234479999999999999           


Q ss_pred             ccCcCcccccchhhccccccccccceeccccccCcCcccccCHHHHHHHhcCCCCceee-------cchhhhhhhHHHHH
Q 003096          361 LFGIPFDCTFHWLFLTCNWQMSGSRIRVAGRFKPCVHTGCFDLETFVELNQRTRKASYS-------FILLFLSMFRIFKL  433 (848)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~lS~~RI~vP~Rg~~C~HlQCFDLetFL~mNer~~tW~C~-------~~~L~l~ID~yf~~  433 (848)
                                          ||++||++||||+.|.|+|||||++||+||++.++|+||       +++|+  ||+||++
T Consensus       220 --------------------lS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~--ID~~~~~  277 (360)
T 4fo9_A          220 --------------------LGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI--LDGLFME  277 (360)
T ss_dssp             --------------------TTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE--EBHHHHH
T ss_pred             --------------------CccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE--EcHHHHH
Confidence                                999999999999999999999999999999999999985       66788  9999999


Q ss_pred             HHhhhhhcCCCCeeEEEEccCCcEEE-eecCCC--CCCCCccCCCCccccc
Q 003096          434 IKVGKMRNFADDLTEIEVKHDGSWRV-KCKGEN--NNLAEWHSPDGSTYAA  481 (848)
Q Consensus       434 IL~s~l~~~~~dv~eIev~~DGSW~v-~~~~E~--~~~~~w~~pdg~~~~~  481 (848)
                      ||    +++ +|+++|+|++||+|++ ..++|.  ....+|...||...++
T Consensus       278 IL----~~~-~~v~~I~v~~DGsW~p~~~k~e~~~~~~~~~~~~~~~~~~~  323 (360)
T 4fo9_A          278 IL----NDC-SDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIESSSVLS  323 (360)
T ss_dssp             HH----TTC-SSCCEEEECC-CCEEC-------------------------
T ss_pred             HH----HhC-CCCCEEEECCCCceecCCCCcccccccCCCCCCcccccccc
Confidence            99    455 4999999999999994 456664  4457777788766554
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Back     alignment and structure
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A Back     alignment and structure
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 848
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 8e-12
d1jeqa151 a.140.2.1 (A:559-609) DNA binding C-terminal domai 8e-07
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 1e-06
d1zrja137 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle 7e-05
d1h1js_44 a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak 1e-04
d1v66a_65 a.140.2.1 (A:) p53 binding domain of protein inhib 2e-04
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 7e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 0.001
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 0.003
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 0.004
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.4 bits (143), Expect = 8e-12
 Identities = 33/68 (48%), Positives = 42/68 (61%)

Query: 88  EAEDSLNLGGKIFCPCGTSLPSESKIQCVDPRCLVQQHISCVIIPEKPMEEIRLLPPLFF 147
             ED      K+ C CG SL ++S IQC DPRC V QH+ CVI+P+KPM+    LP  F+
Sbjct: 6   SGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFY 65

Query: 148 CETCRIKR 155
           CE CR+  
Sbjct: 66  CEICRLTS 73
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37 Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 Back     information, alignment and structure
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query848
d1v66a_65 p53 binding domain of protein inhibitor of activat 99.74
d1jeqa151 DNA binding C-terminal domain of ku70 {Human (Homo 98.24
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.13
d1zrja137 Heterogeneous nuclear ribonucleoprotein U-like pro 97.71
d1h1js_44 S/mar DNA-binding protein Tho1 {Baker's yeast (Sac 97.44
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.19
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.12
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 96.74
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 96.12
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 95.59
d1kcfa136 Mitochondrial resolvase ydc2 N-terminal domain {Fi 95.05
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 94.91
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 94.79
d2do1a142 Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId 91.33
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 90.92
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 88.29
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.9e-19  Score=147.60  Aligned_cols=60  Identities=27%  Similarity=0.445  Sum_probs=57.1

Q ss_pred             hhHHHHHHHHhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCchh---HHHHHHHHHHhh
Q 003096            3 IHVLNLQGKLVNFRMKELKDVLTKLGLPKQGKKQDLVDRIFHQLSDEG---VARIIDDTYRKM   62 (848)
Q Consensus         3 ~~~~~lk~ml~sFRV~ELk~lL~~lGl~KsGrKqEL~dRil~lL~~~~---v~~~I~elYrk~   62 (848)
                      |++.++++||++|||+|||.||+++|++|+||||||+.|+++||+..+   ++.+|+|+|+++
T Consensus         2 ad~~e~~~Mv~sfRVsELQ~LLg~~gr~KsGrK~eL~~RaL~LL~~~~~~~v~~kIrelY~~R   64 (65)
T d1v66a_           2 ADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRR   64 (65)
T ss_dssp             CCTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHhHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence            688999999999999999999999999999999999999999999864   789999999986
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure