Citrus Sinensis ID: 003141

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840----

MGKKQKQKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRVADVKEDDLEALYEKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPKPENGGDENEVGEGEKDGGGNEGIIKLTKAERRAKLKKSKKEAKKEGKKLSKPEEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDKSKVKNKKNNKRKSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERESFNSKSDTQKSSSRRKRGNGTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYKQQKKTGSTKTKKCKKLLIA

cccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccc

ccccccccEccccccccccccccEEEcHHHHHHHHHcHHHHHHHHHccHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHcccccccccccccccccccccHcccccccccccccccccccccccccccEccccccccccccccccHHHcccccccccccHHccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHccccHHccHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccEccccccHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHHHccHHHcccccccccccccccHccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEc

mgkkqkqkiilppelppeiledeievsdedlqfvsenrdyagfvsrldthsitkhvtrvadvkEDDLEALYEKRLRKTSVLKenedkglqldpvdalpvktldgklyyrtrpkpenggdenevgegekdgggnegIIKLTKAERRAKLKKSKKEAKKEgkklskpeeaeqapQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIArddnpsisklgFLSLLAVFKdiipgyrirlptekeLEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNlldavphfncCEILLEVVVRNLGSQDVVVRKLCCATIKSLftnegkhggvATVEAVRLIANHVkvkncqlhpDFVEVFMSlsfdedlqrrevpddkskvknkknnkrksieepsqLQQNERKKNKKELMLKTREEVAAEYKAaslapdvmeKRRMQTETISAVFETYFRILKHTMMFTAVsseanassiggasgahpllapclkglgkfshliDLDYIGDLMNYLKRLagggssndgpsqknsnhltVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILeyrpgrdqGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCrnllendagggsvsgsisiyqpyamdpnlsGALASVLWEINLLSkhyhpsistaassIAGMNSAHNQVYHAILSPQQAFMDLLLEResfnsksdtqksssrrkrgngtsILANTelssnmsgsidenevskkLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYKqqkktgstktkkcKKLLIA

mgkkqkqkiilppelppeiLEDEIEVSDEDLQFVSENRDYAGfvsrldthsitkhvtrvadvkeddLEALYEkrlrktsvlkenedkglqldpvdalpvktldgklyyrtrpkpenggdenevgegekdgggnegiikltkaerraklkkskkeakkegkklskpeeaeqapqvaVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPgyrirlptekelemkvskevkKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKslftnegkhggVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSfdedlqrrevpddkskvknkknnkrksieepsqlqqnerkknkkeLMLKTREEVAAEykaaslapdvmekrrMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAgggssndgpsqknsnhltVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERESFnsksdtqksssrrkrgngtsilantelssnmsgsiDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHlydeykqqkktgstktkkckkllia

MGKKQKQKiilppelppeiledeieVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRVADVKEDDLEALYEKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPKPenggdenevgegekdgggnegIIKLTkaerraklkkskkeakkegkklskPEEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDkskvknkknnkrkSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVsseanassiggasgaHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAgggsvsgsisiYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERESFNSKSDTQKSSSRRKRGNGTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYkqqkktgstktkkckkLLIA

******************************LQFVSENRDYAGFVSRLDTHSITKHVTRVADVKEDDLEALYEKR*******************VDALPVKTLDGKLYY***************************************************************************LTAEELFESKKCKLAELGMALLA************LQIA****PSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSF**************************************************************************ETISAVFETYFRILKHTMMFTAVSSE*****IGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLA****************LTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNL****************YQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLL***************************************************HFMLLRNI************ATLSLHLY***********************

************************EVSDEDLQFVSENRDY*******************************************************ALPVKTLDGKLY**************************************************************************************KCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIR***************KKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQ*********************************************************************ETISAVFETYFRIL*************************PLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSI****************PQQAFMDLLLERES************************************************FMLLRNIKENERLRDELDRATLSLHLY*******************LLI*

MGKKQKQKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRVADVKEDDLEALYEKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPKPENGGDENEVGEGEKDGGGNEGIIKLTKAE******************************VAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQR***********************************KKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGG************NHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERES*****************NGTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYK*******************

******QKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRVADVKEDDLEALYEKRLRKT*************************************************************************************************VLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDKSKVKNKKNNKRKSIEE*SQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTM*******************AHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGS**********NHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMN**HNQVYHAILSPQQAFMDLLLERESFNSKSDTQ***********TSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYKQQKKTGSTKTKKCKKLLI*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		844	2.2.26 [Sep-21-2011]
Q6DRN3		800	Nucleolar complex protein	yes	no	0.670	0.707	0.310	4e-64
Q8VI84		807	Nucleolar complex protein	yes	no	0.623	0.651	0.310	3e-61
Q91Y26		800	Nucleolar complex protein	yes	no	0.626	0.661	0.298	4e-61
Q8WTT2		800	Nucleolar complex protein	yes	no	0.568	0.6	0.313	1e-60
Q5R952		800	Nucleolar complex protein	yes	no	0.568	0.6	0.314	1e-59
Q5XGZ8		795	Nucleolar complex protein	N/A	no	0.629	0.667	0.300	5e-55
O94288		747	Nucleolar complex-associa	yes	no	0.729	0.824	0.263	6e-40
Q9VI82		822	Nucleolar complex protein	yes	no	0.582	0.598	0.242	2e-39
Q07896		663	Nucleolar complex-associa	yes	no	0.585	0.745	0.255	1e-35
P91136		778	Nucleolar complex protein	yes	no	0.566	0.614	0.249	4e-32

>sp\|Q6DRN3\|NOC3L_DANRE Nucleolar complex protein 3 homolog OS=Danio rerio GN=noc3l PE=2 SV=1	Back alignment and function desciption

 Score =  246 bits (629), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 203/654 (31%), Positives = 313/654 (47%), Gaps = 88/654 (13%)

Query: 162 LSKPEEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQI 221
           L K EE E AP +    + ++   A++L E KK ++A L  A+LADP  NIK LKE+  +
Sbjct: 186 LQKEEEPESAPLLTPQEQFEQ--RAQKLME-KKLRIAALSSAILADPHVNIKKLKELRAM 242

Query: 222 ARDDNP----SISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLL 277
             + +P    ++ KL  +SL+ VFKDI+P YRIR  TE+E   KV KE  ++R +E  L+
Sbjct: 243 LMETDPCVAVTVRKLVMVSLMEVFKDIVPAYRIRPLTEEEKAAKVKKETLQLREFEEGLV 302

Query: 278 SAYKAYLQKLIASEK----------QPV-------FHQVVVRCICNLLDAVPHFNCCEIL 320
           S YK YL++L  + K          Q V         +V VRCIC LL A+PHFN    +
Sbjct: 303 SQYKFYLEELEQTVKDWKQKKEKRSQAVSLQSYKGLAEVAVRCICELLVALPHFNFHNNI 362

Query: 321 LEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDF 380
           + ++V  +   D  V ++CC  +K L   +    G A++  V++I+  VK +N ++ P  
Sbjct: 363 IVMLVPLMNDSDKKVSEMCCEAVKKLLKQDK--VGQASLAMVKVISGMVKSRNYRIKPVV 420

Query: 381 VEVFMSLSFDEDLQRREVPDDKSKVKNKK-NNKRKSIEEPSQLQQNERKKNKKELMLKTR 439
           +   + L   E   +++  D   K K      KRK++    +  +   +K +KEL+    
Sbjct: 421 LNCLLCLRIKEVDMKKDTEDTAPKKKFMSFKEKRKNLSRMQRKWKKAEEKLQKELL---- 476

Query: 440 EEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGAS 499
           E  A E K         +K ++ TET++ VF  YFRILK          +A  S      
Sbjct: 477 EAEATESKE--------KKIKLHTETLNVVFLIYFRILK----------KAQKSV----- 513

Query: 500 GAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLR 559
               LL+  L+GL KF+HLI+L++  DL+  L  L   G             LT  E L 
Sbjct: 514 ----LLSSVLEGLAKFAHLINLEFFDDLLAVLYNLITSGD------------LTYRESLH 557

Query: 560 CCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRPG--RDQGEVLAEALKIMLCDDR-Q 616
           C + +F ++    D LN+D   F+  LY  +L    G   +   ++ + L +ML   R Q
Sbjct: 558 CILTSFHILSGQGDVLNIDPLKFYSHLYRTLLTLHAGGVNEDTVIVLQCLDVMLSKRRKQ 617

Query: 617 HDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGGSVSGSIS 676
             +Q+A AF+KRL T +L +     +  L   + L+Q   KC  LL+N+  G  V     
Sbjct: 618 VTLQRAQAFLKRLNTVALHLLPDSCVGILAANRMLMQTFPKCDILLDNETQGSGV----- 672

Query: 677 IYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNSAHNQVYHAI------ 730
            Y P    P       + LWE++LL  HYHP +   A+ +  M  A ++   A+      
Sbjct: 673 -YLPELDVPEYCNPQNTALWELHLLKSHYHPVVRKFAAHL--MKGAPSEGSGALGVELSR 729

Query: 731 LSPQQAFMDLLLERESFNSKSDTQKSSSRRKRGNGTSILANTELSSNMSGSIDE 784
            SP Q F D  ++  SFN       S  +     G + L ++ELS  +  ++ E
Sbjct: 730 RSPLQLFEDYSVKDMSFNPPVAGPPSKKKEYFTIGHAFL-HSELSRQIDAALQE 782

Danio rerio (taxid: 7955)

>sp\|Q8VI84\|NOC3L_MOUSE Nucleolar complex protein 3 homolog OS=Mus musculus GN=Noc3l PE=2 SV=2	Back alignment and function description

>sp\|Q91Y26\|NOC3L_CRIGR Nucleolar complex protein 3 homolog OS=Cricetulus griseus GN=NOC3L PE=2 SV=1	Back alignment and function description

>sp\|Q8WTT2\|NOC3L_HUMAN Nucleolar complex protein 3 homolog OS=Homo sapiens GN=NOC3L PE=1 SV=1	Back alignment and function description

>sp\|Q5R952\|NOC3L_PONAB Nucleolar complex protein 3 homolog OS=Pongo abelii GN=NOC3L PE=2 SV=1	Back alignment and function description

>sp\|Q5XGZ8\|NOC3L_XENLA Nucleolar complex protein 3 homolog OS=Xenopus laevis GN=noc3l PE=2 SV=1	Back alignment and function description

>sp\|O94288\|NOC3_SCHPO Nucleolar complex-associated protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=noc3 PE=1 SV=1	Back alignment and function description

>sp\|Q9VI82\|NOC3L_DROME Nucleolar complex protein 3 homolog OS=Drosophila melanogaster GN=CG1234 PE=1 SV=1	Back alignment and function description

>sp\|Q07896\|NOC3_YEAST Nucleolar complex-associated protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOC3 PE=1 SV=1	Back alignment and function description

>sp\|P91136\|NOC3L_CAEEL Nucleolar complex protein 3 homolog OS=Caenorhabditis elegans GN=C37H5.5 PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		844
297736168		848	unnamed protein product [Vitis vinifera]	0.976	0.971	0.707	0.0
225465034		857	PREDICTED: nucleolar complex protein 3 h	0.976	0.961	0.707	0.0
449493020		825	PREDICTED: nucleolar complex protein 3 h	0.966	0.989	0.665	0.0
449444134		825	PREDICTED: nucleolar complex protein 3 h	0.966	0.989	0.663	0.0
356542545		828	PREDICTED: nucleolar complex protein 3 h	0.973	0.992	0.667	0.0
255544638		831	Nucleolar complex-associated protein, pu	0.970	0.985	0.687	0.0
356534193		831	PREDICTED: nucleolar complex protein 3 h	0.976	0.991	0.671	0.0
357506197		838	Nucleolar complex protein-like protein [	0.984	0.991	0.640	0.0
147827391		786	hypothetical protein VITISV_000380 [Viti	0.890	0.956	0.696	0.0
297842705		826	hypothetical protein ARALYDRAFT_895820 [	0.940	0.961	0.614	0.0

>gi\|297736168\|emb\|CBI24206.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/837 (70%), Positives = 699/837 (83%), Gaps = 13/837 (1%)

Query: 1   MGKKQK-QKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRV 59
           MGKK+K QKIILPP+LPPEI EDE+EVSDEDLQF  ENRDYAGFVS LDTHSIT+HV+RV
Sbjct: 1   MGKKKKRQKIILPPDLPPEIPEDEVEVSDEDLQFFDENRDYAGFVSTLDTHSITRHVSRV 60

Query: 60  ADVKEDDLEALYEKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPK-PENGG 118
           A+VKED LEALYE+RL+K +  K+ E+  LQ+DPVDALPVKTLDG+LYYRT PK P++  
Sbjct: 61  ANVKEDALEALYERRLKKKAAEKQKEESALQVDPVDALPVKTLDGELYYRTAPKKPKDS- 119

Query: 119 DENEVGEGEKDG-GGNEG----IIKLTKAERRAKLKKSKKEAKKEGKKLSKPEEAEQAPQ 173
            EN   + E DG  GNEG    I+KLTKAERRAKLKKSKKEAKK+GK+L K E+ +Q PQ
Sbjct: 120 -ENAADKYEADGEDGNEGVDKSIVKLTKAERRAKLKKSKKEAKKQGKELDKTEDVQQTPQ 178

Query: 174 VAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLG 233
            A LAEVK+DLTAEE FESKK KLAELGMALLADPE+NIK+LKEMLQI++DD+ +I KL 
Sbjct: 179 AAALAEVKQDLTAEETFESKKRKLAELGMALLADPEANIKTLKEMLQISKDDDQAIVKLA 238

Query: 234 FLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQ 293
            LSLLAVFKDIIPGYRIRLPTEKELEM VSKEVKK R+YESTLLS YKAYLQKL+A E+Q
Sbjct: 239 LLSLLAVFKDIIPGYRIRLPTEKELEMTVSKEVKKKRYYESTLLSTYKAYLQKLMALERQ 298

Query: 294 PVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKH 353
             F  +V RCIC LLDAVPHFN  E LL  V++N+GS D VVRKLCCAT+KSLFTN+GKH
Sbjct: 299 ASFQHIVYRCICTLLDAVPHFNFRESLLAAVIKNIGSSDDVVRKLCCATVKSLFTNDGKH 358

Query: 354 GGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDKSKVKNKKNNKR 413
           GG ATVEAV+LIA+HVK  +CQLHPD +EVFM L+FDEDL R E P++ +KVK+KKN KR
Sbjct: 359 GGEATVEAVQLIADHVKAHDCQLHPDSIEVFMYLTFDEDLGRPENPNEDNKVKSKKNKKR 418

Query: 414 KSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETY 473
           K+ EE  +LQ+ ++KKN++EL+ K REEV A+++AAS APDV E+R MQ+E +SAVFETY
Sbjct: 419 KNREESGELQERDKKKNRQELVTKMREEVNADFRAASFAPDVKERRMMQSEALSAVFETY 478

Query: 474 FRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHLIDLDYIGDLMNYLKR 533
           FRILKH+M   +V SE N SS+ GASG HPLL PCL GLGKFSHLIDLD++GDLMN L++
Sbjct: 479 FRILKHSMRQISVRSEENGSSLPGASGNHPLLVPCLIGLGKFSHLIDLDFMGDLMNCLRK 538

Query: 534 LAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEY 593
           LA G S++DG   K    LTV+ERLRCCIVAF+VMRNNL+ALNVDLQ+FF+QLYNL +EY
Sbjct: 539 LACGSSNSDGSCNK---LLTVSERLRCCIVAFKVMRNNLEALNVDLQEFFIQLYNLSIEY 595

Query: 594 RPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQ 653
           RPGRDQGEVLAEALKIMLCDDRQHDMQKAAAF+KRLATFSL  GSAESMAALVTLK+LLQ
Sbjct: 596 RPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFIKRLATFSLCFGSAESMAALVTLKHLLQ 655

Query: 654 KNIKCRNLLENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAA 713
           KN+KCR+LLENDAGG SV GSI  YQPYA DP+ SGALASVLWE+NLLSKHYHP++ST A
Sbjct: 656 KNVKCRHLLENDAGGCSVLGSIVKYQPYASDPSQSGALASVLWELNLLSKHYHPAVSTMA 715

Query: 714 SSIAGMNSAHNQVYHAILSPQQAFMDLLLERESF-NSKSDTQKSSSRRKRGNGTSILANT 772
           S+++GM++ HNQVY A +SPQQAF DL LE ESF N K+   KS+ +RKRG+G+S  A+ 
Sbjct: 716 SNVSGMSTGHNQVYLATVSPQQAFADLSLEHESFINPKNIVMKSNHKRKRGSGSSGAASI 775

Query: 773 ELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDELDRATLSLHLYDEYKQQKK 829
             + + +  IDE+ + KKL +HF +L +IKENERLR ELDR TLSL +Y+E+K +KK
Sbjct: 776 NPTPDAATPIDEDGLRKKLSEHFTILHDIKENERLRGELDRVTLSLQVYEEHKNRKK 832

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225465034\|ref\|XP_002266128.1\| PREDICTED: nucleolar complex protein 3 homolog [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449493020\|ref\|XP_004159169.1\| PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449444134\|ref\|XP_004139830.1\| PREDICTED: nucleolar complex protein 3 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356542545\|ref\|XP_003539727.1\| PREDICTED: nucleolar complex protein 3 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|255544638\|ref\|XP_002513380.1\| Nucleolar complex-associated protein, putative [Ricinus communis] gi\|223547288\|gb\|EEF48783.1\| Nucleolar complex-associated protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356534193\|ref\|XP_003535642.1\| PREDICTED: nucleolar complex protein 3 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|357506197\|ref\|XP_003623387.1\| Nucleolar complex protein-like protein [Medicago truncatula] gi\|355498402\|gb\|AES79605.1\| Nucleolar complex protein-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|147827391\|emb\|CAN70879.1\| hypothetical protein VITISV_000380 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297842705\|ref\|XP_002889234.1\| hypothetical protein ARALYDRAFT_895820 [Arabidopsis lyrata subsp. lyrata] gi\|297335075\|gb\|EFH65493.1\| hypothetical protein ARALYDRAFT_895820 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		844
TAIR\|locus:2207370		830	AT1G79150 [Arabidopsis thalian	0.755	0.768	0.615	1.5e-225
UNIPROTKB\|F1MP56		799	NOC3L "Uncharacterized protein	0.405	0.428	0.3	3e-51
RGD\|1560656		799	Noc3l "nucleolar complex assoc	0.405	0.428	0.296	9.1e-51
UNIPROTKB\|F1SC66		809	NOC3L "Uncharacterized protein	0.405	0.422	0.297	2.4e-50
UNIPROTKB\|E1BXA0		748	NOC3L "Uncharacterized protein	0.399	0.450	0.309	3.7e-49
MGI\|MGI:1932610		807	Noc3l "nucleolar complex assoc	0.405	0.423	0.291	1.4e-48
UNIPROTKB\|E2QZX4		799	NOC3L "Uncharacterized protein	0.405	0.428	0.309	1.4e-48
UNIPROTKB\|Q8WTT2		800	NOC3L "Nucleolar complex prote	0.405	0.427	0.295	9.3e-48
ZFIN\|ZDB-GENE-030131-9878		800	noc3l "nucleolar complex assoc	0.398	0.42	0.297	1e-46
POMBASE\|SPBC887.03c		747	noc3 "Noc2p-Noc3p complex subu	0.335	0.378	0.290	6.5e-37

TAIR\|locus:2207370 AT1G79150 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1999 (708.7 bits), Expect = 1.5e-225, Sum P(2) = 1.5e-225
 Identities = 398/647 (61%), Positives = 497/647 (76%)

Query:   166 EEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDD 225
             +E E+ PQ AVLAEVKE+L+AEE FE+KK K+AELGM LL+DPE+NIK+LK+ML I +D 
Sbjct:   163 QEEEETPQAAVLAEVKEELSAEESFENKKNKIAELGMLLLSDPEANIKTLKDMLDICKDQ 222

Query:   226 NPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQ 285
             N  I KL  LSLLAVFKDIIPGYRIRLPTEKELEMK+SKEVKK RFYESTLL AYK+YLQ
Sbjct:   223 NTKIVKLALLSLLAVFKDIIPGYRIRLPTEKELEMKISKEVKKTRFYESTLLKAYKSYLQ 282

Query:   286 KLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKS 345
             KLI  EKQ V++Q+  RC+C LL+AVPHFN  + LL  VVRN+ S D VVR+LCC+TI+ 
Sbjct:   283 KLIIFEKQSVYNQIANRCLCTLLEAVPHFNYRDNLLIAVVRNISSPDEVVRRLCCSTIRY 342

Query:   346 LFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDXXXX 405
             LF+NEGKHGG  TV+AVRLIA+HVK  NCQLHP+ +EVFMS+ FDED+ +    D+    
Sbjct:   343 LFSNEGKHGGELTVQAVRLIADHVKAHNCQLHPNAIEVFMSIRFDEDIGKPNKEDEHNKK 402

Query:   406 XXXXXXXXXSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEKRRMQTET 465
                        EE +Q+Q+NERKK+KK++M K R+EV+A+++  +  PD  E+R+MQTET
Sbjct:   403 YKKNNKRKTQ-EEQNQVQENERKKSKKDMMSKIRDEVSADHRGVTYEPDAKERRKMQTET 461

Query:   466 ISAVFETYFRILKHTMMFTAVXXXXXXXXXXXXXXXHPLLAPCLKGLGKFSHLIDLDYIG 525
             +SAVFETYFRIL++TM                    HPLLAPCL GL KF+  +DLDY+G
Sbjct:   462 LSAVFETYFRILRNTMYTIGERTEEIPTSNPGAFGSHPLLAPCLDGLAKFTQQLDLDYMG 521

Query:   526 DLMNYLKRLAGGGSS-NDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFV 584
             DLMNYLK+LA   SS ++   QKNS  LTV+ERLRCC+VAF+VMR+NL+ALNVDLQDFFV
Sbjct:   522 DLMNYLKKLASSSSSVSNNTKQKNSKLLTVSERLRCCLVAFKVMRSNLNALNVDLQDFFV 581

Query:   585 QLYNLILEYRPGRDQGEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAA 644
             QLYNLILEYRPGRD G +LAE+LKIMLCDDR  DMQKAAAFVKRLATF+L  G AESM+A
Sbjct:   582 QLYNLILEYRPGRDSGVILAESLKIMLCDDRHQDMQKAAAFVKRLATFALCFGCAESMSA 641

Query:   645 LVTLKNLLQKNIKCRNLLENDAXXXXXXXXXXXYQPYAMDPNLSGALASVLWEINLLSKH 704
             LVTLK LLQKN+KCRNLLENDA           YQPYA DPNLSGALA+VLWE++LLSKH
Sbjct:   642 LVTLKTLLQKNVKCRNLLENDAGGGSVSGSIAKYQPYATDPNLSGALATVLWELSLLSKH 701

Query:   705 YHPSISTAASSIAGMNSAHNQVYHAILSPQQAFMDLLLERESFNSKSDTQKSSSRRKRGN 764
             YHP+IST A++++ MN++ +Q + + ++PQQAF D  L +ESF  K++++K +++RKR  
Sbjct:   702 YHPAISTMATTVSNMNTSQSQTFLSAVTPQQAFADFSLVKESFEPKNESRKLNNKRKR-- 759

Query:   765 GTSILANTELSSNMSGSIDENEVSKKLGDHFMLLRNIKENERLRDEL 811
               S+    E + N+   ID  ++SKKL ++F +LR+IKE+ER+R EL
Sbjct:   760 -ESL---PEEAKNVP-EIDMVKLSKKLKENFTILRDIKEDERVRMEL 801

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

UNIPROTKB\|F1MP56 NOC3L "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1560656 Noc3l "nucleolar complex associated 3 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SC66 NOC3L "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXA0 NOC3L "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1932610 Noc3l "nucleolar complex associated 3 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QZX4 NOC3L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WTT2 NOC3L "Nucleolar complex protein 3 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-9878 noc3l "nucleolar complex associated 3 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

POMBASE\|SPBC887.03c noc3 "Noc2p-Noc3p complex subunit Noc3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		844
COG5117		657	COG5117, NOC3, Protein involved in the nuclear exp	6e-56
pfam07540		95	pfam07540, NOC3p, Nucleolar complex-associated pro	2e-32
pfam03914		151	pfam03914, CBF, CBF/Mak21 family	3e-29

>gnl\|CDD\|227447 COG5117, NOC3, Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]	Back alignment and domain information

 Score =  204 bits (519), Expect = 6e-56
 Identities = 156/652 (23%), Positives = 268/652 (41%), Gaps = 91/652 (13%)

Query: 108 YRTRPKPENGGDENEVGEGEKDGGGNEGIIKLTKAERRAKLKKSKKEAKKEGKKLSKPEE 167
           Y  RP+  +    NE          +  +  +   E    L +S+ EA  E       + 
Sbjct: 58  YELRPR-VSSSWNNESYNRLPIKTKDNVVADVNNGEE--FLSESESEASLE----IDSDI 110

Query: 168 AEQAPQVAVLAEVKEDLTAEELFESKKCKLAELGMALLADPESNIKSLKEMLQIARDDNP 227
            ++  +     ++  ++  ++  +S+K ++A +   ++ +PE N+  ++E+  +      
Sbjct: 111 KDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICTKIIEEPEENLGMMEEVFSMITSMAE 170

Query: 228 SISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL 287
              K+ +LSLL VFK IIPGY+IR   E+E  +K SKEV  ++ YE +LL  Y +Y++ L
Sbjct: 171 KAKKVSYLSLLKVFKAIIPGYKIRPLKEEEQMVKDSKEVLHLKDYEQSLLRWYTSYIKTL 230

Query: 288 I--------ASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRN-LGSQDVVVRKL 338
           +          E Q   +QV    +C L+    HFNC + +  +V+R  LG+    V  L
Sbjct: 231 VDDVKDESTLDETQSSLYQVAYISLCELIQHASHFNCTDKVFSLVLRGILGTTKRPVSML 290

Query: 339 CCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREV 398
              TIKS    E    G  ++ A  +     K +N  +    +++ +S     +  R E 
Sbjct: 291 IIDTIKSKL--EEDCTGKTSLVATVIDQMLDKERNPLVLEYVLDIPLSD----NSLRDEE 344

Query: 399 PDDKSKVKNKKNNKRKSIEEPSQLQQNERKKNKKELMLKTREEVAAEYKAASLAPDVMEK 458
              K    NK  +KR+  +    L +  R K +KE     R  + +E + A    + +E+
Sbjct: 345 KARKYWEANKPVSKREKKDIF-HLSKKLR-KIEKE-----RLRIQSEMRDAEDIEEAIEE 397

Query: 459 RRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKGLGKFSHL 518
            + Q+E +  +F  YF +LK                         L+   L+GL K+  +
Sbjct: 398 EKNQSEILKIIFRLYFMVLK--------------------GDRKDLIGYVLEGLVKYRKI 437

Query: 519 IDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNL-DALNV 577
           I+ +++GDL+  L  L      ND P  K S+     + L C + AF +    L    N 
Sbjct: 438 INPEFLGDLLEVLYELL-----NDNPLDKISSDARR-QALLCILTAFEIASATLYGKENY 491

Query: 578 DLQDFFVQLYNLI----------LEYRPGRD----------------QGEVLAEALKIML 611
           DL  F   LY+++          L  +  R                   E L + ++++ 
Sbjct: 492 DLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLF 551

Query: 612 CDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLL--ENDAGGG 669
              +Q   ++   F KRL             A L     L  +   C NL   E D G G
Sbjct: 552 FKSKQPVHRRHVIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEFDIGAG 611

Query: 670 SVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNS 721
                         +P+LS +  +VL+E  LL +HY P++S +A  +    S
Sbjct: 612 -------NVDSIPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLKSTS 656

Length = 657

>gnl\|CDD\|219459 pfam07540, NOC3p, Nucleolar complex-associated protein	Back alignment and domain information

>gnl\|CDD\|217788 pfam03914, CBF, CBF/Mak21 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		844
KOG2153		704	consensus Protein involved in the nuclear export o	100.0
COG5117		657	NOC3 Protein involved in the nuclear export of pre	100.0
KOG2038		988	consensus CAATT-binding transcription factor/60S r	100.0
COG5593		821	Nucleic-acid-binding protein possibly involved in	100.0
PF03914		164	CBF: CBF/Mak21 family; InterPro: IPR005612 This do	100.0
KOG2154		505	consensus Predicted nucleolar protein involved in	99.95
PF07540		95	NOC3p: Nucleolar complex-associated protein; Inter	99.95
KOG2153		704	consensus Protein involved in the nuclear export o	99.14
KOG2038		988	consensus CAATT-binding transcription factor/60S r	89.49
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	89.43
PTZ00429		746	beta-adaptin; Provisional	87.97
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	86.48
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	84.66

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.1e-106  Score=907.80  Aligned_cols=639  Identities=36%  Similarity=0.518  Sum_probs=543.7

Q ss_pred             Ccc-cccccccCCCCCCCCCCcccccCChhhHHHHHhhcccccccccccccccccccccc----c---------------
Q 003141            1 MGK-KQKQKIILPPELPPEILEDEIEVSDEDLQFVSENRDYAGFVSRLDTHSITKHVTRV----A---------------   60 (844)
Q Consensus         1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~D~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~---------------   60 (844)
                      ||. ++|+++|.||.+||+.-......+++|....+++..++.+++.++..-+....++.    +               
T Consensus         1 ~~~~~~k~~~~k~~~~~~~~k~~~~qf~~~~~k~~k~~~~~~~~~s~~~~~~~n~k~~~~~~~~ee~~~e~~~~~~~l~~   80 (704)
T KOG2153|consen    1 KKSNRRKQAVIKPKKLPLSVKRNNSQFSDEDRKTRKKGTDYAREVSQLDIAAFNNKCGSLVMTEEEDEDEEREKRKILDL   80 (704)
T ss_pred             CCCCcchhhccCCccCChhHHHHhhhhhhhhHHHHhhhhHHHHHhhhhhHHhhcccccccccCCcccccccchhhhhhhh
Confidence            566 78889999999999999999999999999999999999999888765443321110    0               


Q ss_pred             ----------CCCchh-----------HHHHHHhhhhhhhhhccccccCCCCCCCCCCCcccCCCeeeeccCCCCCCCCC
Q 003141           61 ----------DVKEDD-----------LEALYEKRLRKTSVLKENEDKGLQLDPVDALPVKTLDGKLYYRTRPKPENGGD  119 (844)
Q Consensus        61 ----------~~~~~~-----------~e~~YE~~~r~~~~~~~~~~~~~~~~~~~~LPiK~~~G~i~~~~~~~~~~~~~  119 (844)
                                ..++++           .|++||++||+.+.+ +++.       +++||||++||.+ ++..+++..+.+
T Consensus        81 ~k~~~~~~~~~~s~~ee~~~d~~~~~~~e~~ye~~pr~~~~~-~k~~-------~~~lpIk~k~~~~-~~~~k~~e~~~~  151 (704)
T KOG2153|consen   81 KKSNGEILTRPLSSDEEKTLDGKKHYRTEQDYEKLPRKEQDA-EKEL-------LELLPIKNKDPVR-RQKAKKEERESD  151 (704)
T ss_pred             ccccchhhccccccCcccCccccccchhHHHHhhccccccch-HHhh-------hhcCccccCCccc-hhhhcccccccc
Confidence                      112333           599999999988765 4433       7999999988766 454433322211


Q ss_pred             CCccCCCCCCCCCCchhhhhhHHHHHHHHhhhhHHHhHhcccCCCchhhhccchHHHHHhhhhcCCHHHHHHHHHHHHHH
Q 003141          120 ENEVGEGEKDGGGNEGIIKLTKAERRAKLKKSKKEAKKEGKKLSKPEEAEQAPQVAVLAEVKEDLTAEELFESKKCKLAE  199 (844)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~e~~~~~kdkIAa  199 (844)
                      .+|+  +..++.+                                 .++++.+.+++.++.++++++++.|++.|.+||+
T Consensus       152 ~~ee--d~~~e~~---------------------------------~e~de~~~~~~ea~~~e~l~~~~~i~n~K~kIA~  196 (704)
T KOG2153|consen  152 DDEE--DLDEEDS---------------------------------DEDDETPNAAEEAEIKEELPREEKIENKKEKIAS  196 (704)
T ss_pred             cchh--cccchhc---------------------------------cccccccCHHHHhhcchhcchHHHHHHHHHHHHH
Confidence            1111  1000000                                 0123456667778899999999999999999999


Q ss_pred             HHHHHHhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHH
Q 003141          200 LGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSA  279 (844)
Q Consensus       200 L~~~I~edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~  279 (844)
                      +|+.|++||+.|++.|.+|+.||.+.+++++|++++||++||||||||||||++|+.|+.++++|+|+++|.||++|+++
T Consensus       197 l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~  276 (704)
T KOG2153|consen  197 LCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQ  276 (704)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCc--------chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhcc
Q 003141          280 YKAYLQKLIASEKQP--------VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEG  351 (844)
Q Consensus       280 Y~~yLq~Le~l~k~~--------~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~  351 (844)
                      |++|||.|+.+.++.        ++.++|++|+|+|+..+|||||++||+.++|+.++++...++..||.+++.+|.+|.
T Consensus       277 Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~  356 (704)
T KOG2153|consen  277 YKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDN  356 (704)
T ss_pred             HHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCC
Confidence            999999999998887        578999999999999999999999999999999999999999999999999999994


Q ss_pred             CCCCccHHHHHHHHHHhhhhcCCCCCHHHHHHhhcccccccccccCCCcchhhhhhhhhccccccccchhhHHHHHHHHH
Q 003141          352 KHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSLSFDEDLQRREVPDDKSKVKNKKNNKRKSIEEPSQLQQNERKKNK  431 (844)
Q Consensus       352 ~~~G~~sleiVr~I~~~vK~k~~~v~p~vl~~fL~Lr~~e~l~~~~~~~~~~~~K~Kk~kkrk~~~~~~~ls~~~~KK~k  431 (844)
                        .|.+|+.+||.|+.++|.++|+|+|+++.||++|+++++....+.++... .+.++..    .+...+++++.||+  
T Consensus       357 --~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k-~~~~k~~----k~k~~~lskK~RK~--  427 (704)
T KOG2153|consen  357 --GGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKK-QKNKKSS----KKKLSSLSKKERKR--  427 (704)
T ss_pred             --ccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcchhhhccchhhhccch-hhhHHHH----HHHHhhccHHHHHH--
Confidence              79999999999999999999999999999999999999888766544321 1111111    11123566666654  


Q ss_pred             HHHHHHhHHHHHHHHHhhccCCCHHHHhhhhHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCCccchHHHHhh
Q 003141          432 KELMLKTREEVAAEYKAASLAPDVMEKRRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCLKG  511 (844)
Q Consensus       432 Ke~~~K~~kele~El~Eaea~~d~~er~k~qteiL~~vF~iYFRILK~~~~~~~~~~~~~~ra~p~a~~~s~LL~~vLeG  511 (844)
                          +|.+.++++|+++|+|.++.+++.++|||||++||.|||||||...                   -+ +|+++|+|
T Consensus       428 ----kKe~~ki~rE~reaea~e~aeek~k~~sEiLkiVFtiYFrILkn~~-------------------~t-ll~~vlEG  483 (704)
T KOG2153|consen  428 ----KKERNKIEREMREAEAEESAEEKMKKQSEILKIVFTIYFRILKNDR-------------------YT-LLGAVLEG  483 (704)
T ss_pred             ----HHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHhcch-------------------hh-HHHHHHhh
Confidence                3447899999999999999999999999999999999999999973                   34 99999999


Q ss_pred             hhcccccCChhhHHHHHHHHHHHhcCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccCChHHHHHHHHHhhh
Q 003141          512 LGKFSHLIDLDYIGDLMNYLKRLAGGGSSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLIL  591 (844)
Q Consensus       512 L~KfaHlIN~df~~DLl~vL~~Li~~~~~~~~~~~~~~~~ls~~~~L~ci~taF~LL~~~g~alniD~~rFY~~LY~~L~  591 (844)
                      |++|+|+||++|++||+.||+.++.+            +.++++++|+|++|||.||+|||+.+|||+..||.+||++|+
T Consensus       484 lakf~h~invef~~dll~vlk~ll~d------------~~~~~re~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~  551 (704)
T KOG2153|consen  484 LAKFAHLINVEFLGDLLKVLKELLED------------IELSYREALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLF  551 (704)
T ss_pred             HHHHhhhccHHHhhhHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhc
Confidence            99999999999999999999999975            468999999999999999999999999999999999999999


Q ss_pred             ccCCCCCh--HHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhccccccccccccCCC
Q 003141          592 EYRPGRDQ--GEVLAEALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNLLQKNIKCRNLLENDAGGG  669 (844)
Q Consensus       592 ~~~~~~~~--~~~ll~~L~~~l~~~~~~~~~RvaAFiKRLl~~aL~~p~~~ala~L~li~~Ll~~~P~l~~LLe~e~~~g  669 (844)
                      +++.+.+.  ...+++|++.+|.++++ ++.+|.+|++||+++++|+-+...+    +.+..++.+++|..|++.+    
T Consensus       552 ~~~~~~~~~~~~~ilr~~d~~~~k~r~-~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~~~fsk~~~~~~~~----  622 (704)
T KOG2153|consen  552 PMNLGPDDDGFAIILRLLDPLLIKIRK-PVVNVITKMERLLKCSLHVFFNSKL----ISKYRDIEFSKRLNLLDSE----  622 (704)
T ss_pred             ccccCCCcchHHHHHHHhhHhhhhhhh-hHHHHHHHHHHHHHHHHHHhhcccc----hHHHHHHHhhhhhhhhhcc----
Confidence            98876643  35788999999988776 4555999999999999998887655    7788899999999888765    


Q ss_pred             CcccCCCCCCCCCCCCCCCCCCchhHHHHHHHhhCcChHHHHHHHHhhcCCC----CCCccccCCCChHHHHHhcccccc
Q 003141          670 SVSGSISIYQPYAMDPNLSGALASVLWEINLLSKHYHPSISTAASSIAGMNS----AHNQVYHAILSPQQAFMDLLLERE  745 (844)
Q Consensus       670 ~vsg~~~~Ydp~~~DPe~~nA~~S~LWEL~lL~~HyHPsV~~~A~~i~~~~~----~~~~~~l~~~~p~e~~~~~~~~~~  745 (844)
                                    -|+||++.++.|||+.+++  |||.|+.||.++.-+.+    +..+|++|..+..+||+. ++.+|
T Consensus       623 --------------~pe~~s~a~~al~e~~l~r--y~~~~~~~a~~~~~G~~~~~~~a~~p~~s~~sa~~L~~~-~~~~~  685 (704)
T KOG2153|consen  623 --------------TPEYCSIASLALFEKLLLR--YHPISRLMASEIAIGVGATGEGALPPELSNLSAAELFEQ-DLLEM  685 (704)
T ss_pred             --------------CccccccccHHHHHHHHHh--cchHHHHHHHHHhhcCCccCcCCCCccccCchHHHHhhh-HHHHh
Confidence                          1999999999999999999  99999999999954432    346899999999999999 99999


Q ss_pred             cccCCCCCc
Q 003141          746 SFNSKSDTQ  754 (844)
Q Consensus       746 ~f~p~~~~~  754 (844)
                      .|||+||.+
T Consensus       686 ~~~P~v~~~  694 (704)
T KOG2153|consen  686 HYNPTVPLS  694 (704)
T ss_pred             ccCCCCCch
Confidence            999999954

>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]	Back alignment and domain information

>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis	Back alignment and domain information

>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae []	Back alignment and domain information

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		844
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 67.6 bits (164), Expect = 1e-11
 Identities = 94/666 (14%), Positives = 195/666 (29%), Gaps = 200/666 (30%)

Query: 239 AVFKDIIPGYRIRLPTEKE--------LEMKVSKEVKKMRFYESTLLSAYKAYLQKLIAS 290
                II                    L  K  + V+  +F E  L   YK +L   I +
Sbjct: 49  EEIDHII-----MSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINYK-FLMSPIKT 100

Query: 291 E-KQP-----VFHQVVVRCICNLLDAVPHFNCC--EILLEV--VVRNLGS-QDVVVRKLC 339
           E +QP     ++ +   R + N       +N    +  L++   +  L   ++V++    
Sbjct: 101 EQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---- 155

Query: 340 CATIKSLFTNEGKHG--G----VATVEAVR------LIANHV---KVKNCQLHPDFVEVF 384
                         G  G       ++          +   +    +KNC      +E+ 
Sbjct: 156 -------------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 385 MSLSFDEDLQRREVPDDKSKVKNKKNNKRKSIEEPSQLQQNERKKNKKELMLKTREEVAA 444
             L +  D       D  S +K               L+ +  +   + L+         
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIK---------------LRIHSIQAELRRLLKSKP----- 242

Query: 445 EYKAASLA-PDVMEKRRMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHP 503
            Y+   L   +V        +  +A F    +IL    + T      +   +  A+  H 
Sbjct: 243 -YENCLLVLLNVQNA-----KAWNA-FNLSCKIL----LTTRFKQVTDF--LSAATTTHI 289

Query: 504 LLAPCLKGLGK------FSHLIDLDYIGDLMNYLKRLAGGGS----------SNDGPSQ- 546
            L      L            +D     D    L R     +            DG +  
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCR-PQD----LPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 547 KNSNHLTVTERLRCCIVAFRVMRNNLDALN-VDLQDFFVQLYNLILEYRPGRDQGEVLAE 605
            N  H+   ++L        ++ ++L+ L   + +  F +L   +           +   
Sbjct: 345 DNWKHVN-CDKLT------TIIESSLNVLEPAEYRKMFDRLS--VF-----PPSAHIPTI 390

Query: 606 ALKIMLCDDRQHDMQKAAAFVKRLATFSLSIGSAESMAALVTLKNL-LQKNIKCRNL--L 662
            L ++  D  + D+      V +L  +SL     +     +++ ++ L+  +K  N   L
Sbjct: 391 LLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKES--TISIPSIYLELKVKLENEYAL 445

Query: 663 ENDAGGGSVSGSISIYQPYAMDPNLSGALASVLWEINLLSKH--YHPSISTAASSIAGMN 720
                        SI   Y +            +       H  +H            + 
Sbjct: 446 HR-----------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH------------LK 482

Query: 721 SAHNQVYHAILSPQQAFMDLLLERESFNSKSDTQKSSSRRK-RGNGTSILANTELSSNMS 779
           +  +     +   +  F+D       F            +K R + T+  A+  + + + 
Sbjct: 483 NIEH--PERMTLFRMVFLDF-----RF----------LEQKIRHDSTAWNASGSILNTLQ 525

Query: 780 ------GSIDENE--VSKKLGD--HFMLLRNIKENERLRDELDRATLSL-----HLYDE- 823
                   I +N+    + +     F  L  I+EN       D   ++L      +++E 
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Query: 824 YKQQKK 829
           +KQ ++
Sbjct: 584 HKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		844
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	92.27
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	91.39
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	90.54
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	89.55
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	88.49
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	86.63
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	86.38
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	84.99
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	84.97
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	82.29
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	81.11
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	80.73
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	80.28
1qgr_A		876	Protein (importin beta subunit); transport recepto	80.04

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=92.27  E-value=0.31  Score=50.51  Aligned_cols=141  Identities=10%  Similarity=0.105  Sum_probs=90.0

Q ss_pred             HHHhhccChhhHHHHHHHHHH-HHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-
Q 003141          219 LQIARDDNPSISKLGFLSLLA-VFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE-KQPV-  295 (844)
Q Consensus       219 ~~m~~~k~~~vrkLAilSL~~-VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~-k~~~-  295 (844)
                      ..++.+++-..|+-|+.+|.. +... .|  +|-+..                       ..|..+++.|.... +|++ 
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~-~~--~i~~~~-----------------------~~~~~~~~~L~~~l~~D~n~   75 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQ-TK--KLKSTS-----------------------QNYSNLLGIYGHIIQKDANI   75 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGG-CC--CBCCTT-----------------------CCCHHHHHHHHHHHHHCSCH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhc-CC--ccccCc-----------------------ccHHHHHHHHHHHhccCCCH
Confidence            445567777888888887777 6543 22  222100                       01334444444443 4553 


Q ss_pred             -hHHHHHHHHHHHhhcC--CCCc--hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccH-H-HHHHHHHHh
Q 003141          296 -FHQVVVRCICNLLDAV--PHFN--CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVAT-V-EAVRLIANH  368 (844)
Q Consensus       296 -l~~~Avkclc~LL~~~--PhFN--f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~s-l-eiVr~I~~~  368 (844)
                       .+..|++|+..|....  |+|+  |...+|..|+.+++++...|+..+..++..++..-.. ....+ + .++..|...
T Consensus        76 ~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~  154 (249)
T 2qk1_A           76 QAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEH  154 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHH
Confidence             5788899998888765  6886  9999999999999999999999889999999886310 00000 2 355566666


Q ss_pred             hhhcCCCCCHHHHHHhhc
Q 003141          369 VKVKNCQLHPDFVEVFMS  386 (844)
Q Consensus       369 vK~k~~~v~p~vl~~fL~  386 (844)
                      ++.++.++...++.++-.
T Consensus       155 l~~k~~~vk~~al~~l~~  172 (249)
T 2qk1_A          155 MKHKTPQIRMECTQLFNA  172 (249)
T ss_dssp             TTCSSHHHHHHHHHHHHH
T ss_pred             HcCCChHHHHHHHHHHHH
Confidence            666665555555555443

PyMOL of 2qk1

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		844
d1b3ua_		588	Constant regulatory domain of protein phosphatase	94.27
d1b3ua_		588	Constant regulatory domain of protein phosphatase	81.96
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	80.62

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=2.6  Score=44.66  Aligned_cols=143  Identities=11%  Similarity=0.125  Sum_probs=91.6

Q ss_pred             HHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003141          208 PESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL  287 (844)
Q Consensus       208 Pe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~L  287 (844)
                      +...-..+..+..+|.+.++.||+.|..++..+...+ +                 .+     .....|+       ..|
T Consensus       159 ~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~-~-----------------~~-----~~~~~l~-------~~l  208 (588)
T d1b3ua_         159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL-E-----------------LD-----NVKSEII-------PMF  208 (588)
T ss_dssp             HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS-C-----------------HH-----HHHHTHH-------HHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh-c-----------------HH-----HHHHHHH-------HHH
Confidence            3333334566777888999999999998888775432 1                 01     1111222       223


Q ss_pred             HHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCc-cHHHHHHH
Q 003141          288 IASEKQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGV-ATVEAVRL  364 (844)
Q Consensus       288 e~l~k~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~-~sleiVr~  364 (844)
                      ..+..++  ..+..|+.++..++...+...+...++..+.+.+.|++..|+..|+.+|..+...-+   .+ ..-.++..
T Consensus       209 ~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~  285 (588)
T d1b3ua_         209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPA  285 (588)
T ss_dssp             HHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHH
T ss_pred             HHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHH
Confidence            3344443  567788999999988888777777888899999999999999999999888776531   11 11235566


Q ss_pred             HHHhhhhcCCCCCHHHHHH
Q 003141          365 IANHVKVKNCQLHPDFVEV  383 (844)
Q Consensus       365 I~~~vK~k~~~v~p~vl~~  383 (844)
                      +..+++..+..|+...+..
T Consensus       286 l~~ll~d~~~~vr~~a~~~  304 (588)
T d1b3ua_         286 FQNLMKDCEAEVRAAASHK  304 (588)
T ss_dssp             HHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHH
Confidence            6666654444444434443

PyMOL of d1b3ua_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure