Citrus Sinensis ID: 003149

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840----

MEEQVLSEGADHEDDESSTCGSTVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQDSDSAPLRTSSATSMQLKGRQKEKVFRTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFSQTPDFSFF

ccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHcccEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEcHHHHHHHHccccEEEEEcccccccccccEEEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccEEEEEEEEEEEEEEEEEEEEcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHccccEEEEEEcccccccccccccccccccccccEEEEEEccccEEEEEccccccccccc

cccccccccccccccccccccHHcccccccccccccccccEEccHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEEEEEHccccccccccEEEEcccccEEEEEccccEEEEEEEEccccEEEEEEEEcccccccccHcHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEcHHHHHHHHccccEEEEEccEcccccccEEEEEEEEcccccEEEEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccEEEEEEEccccEEEEEEEccEEccccccHccccHHHHHHHHHHccccccHHHHHHHccHHHcccccccccccccccccccEcccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccccccccccccccccccccccEccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHccccccccHccEEEcccccEEEEEEEEEEEEEEcHHHHccccccccccccccccEEEEEEEEEccEEEEEEEcccccccccc

meeqvlsegadheddesstcgstvgneddvdfssaftTDMVFNSREELVEWIRDTGKRNGLVIVIKksdvggdgrrpritfacersgayrrkytegqtpkrpkttgtkkcgcpfllkghkldtdddwILKVVCgvhnhpvtqhveghsyagrltEQEANILVdlsrsnispkeILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEwhryneetdcfkdlfwahpfavgllrafpsvvmidctyktsmypfsFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSmmeddalprvivtdKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGamesdfsrypqAIDYVKQTWLANYKEKFVAAWTDLAMHFGnvtmnrgettHTKLKRLLavpqgnfeTSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIilgeseradsvglnasacgcvfrrthglpcahEIAEykherrsipllavdrhwkkldfvpvtqdTALELSFRAEIEMFVKRFeetdgpgkRQLLKKLKELtnsastfnsasTSLVelevdgfplsklgtstyqdpseLQYVLsvqdsdsaplrtssatsmqlkgrqkekvfrtkshqplcfidsfpaglrpyihdvqdviadghcGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLsysesnpgiehrmimpdtgHLIASRYNIVLMHLSqqqcftflplrsvplprtsrkivtIGFVNEcqfvkvldfsqtpdfsff

MEEQVLsegadheddesstcgstvgneddVDFSSAFTTDMVFNSREELVEWIrdtgkrnglvivikksdvggdgrrpritfacersgayrrkytegqtpkrpkttgtkkcgcPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILqtlkqrdmhNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAyleserddnYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRfeetdgpgkRQLLKKLKELtnsastfnsastslveLEVDGFPLSKLGTSTYQDPSELQYVLSVQdsdsaplrtssatsmqlkgrqkekvfrtkshqplCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFvkvldfsqtpdfsff

MEEQVLSEGADHEDDESSTCGSTVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQtpkrpkttgtkkcgcpFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELtnsastfnsastsLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQDSDSAPLRTSSATSMQLKGRQKEKVFRTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFSQTPDFSFF

*******************************FSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAY******************KKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRF**********************************LEVDGF*****************************************************HQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFS********

*********************************SAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRK**************TKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEAN*******************KQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSL**************************************************************************LRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFSQTPDFSFF

**********************TVGNEDDVDFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQ**************************RTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFSQTPDFSFF

*********************************SAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGGDGRRPRITFACERSGAYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERADSVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKLGTSTYQDPSELQYVLSVQ**********************EKVFRTKSHQPLCFIDSFPAGLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLDFSQTPD**FF

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		844	2.2.26 [Sep-21-2011]
Q9SZL8		788	Protein FAR1-RELATED SEQU	yes	no	0.399	0.427	0.238	2e-12
Q9SY66		680	Protein FAR1-RELATED SEQU	no	no	0.356	0.442	0.201	8e-07
Q9SWG3		827	Protein FAR-RED IMPAIRED	no	no	0.465	0.475	0.206	9e-07
Q3EBQ3		807	Protein FAR1-RELATED SEQU	no	no	0.414	0.433	0.208	1e-06
Q9SSQ4		703	Protein FAR1-RELATED SEQU	no	no	0.200	0.240	0.253	5e-06
Q3E7I5		788	Protein FAR1-RELATED SEQU	no	no	0.127	0.137	0.279	3e-05
Q9LIE5		839	Protein FAR-RED ELONGATED	no	no	0.139	0.140	0.243	0.0002
Q9ZVC9		851	Protein FAR1-RELATED SEQU	no	no	0.138	0.137	0.237	0.0003

>sp\|Q9SZL8\|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1	Back alignment and function desciption

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 139/365 (38%), Gaps = 28/365 (7%)

Query: 73  DGRRPRITFACERSG--AYRRKYTEGQTPKRPKTTGTKKCGCPFLLKGHKLDTDDDWILK 130
           DG   +  F C + G      K T+ +  KRP+T    + GC   L   K+     W++ 
Sbjct: 111 DGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTI--TRVGCKASLSV-KMQDSGKWLVS 167

Query: 131 VVCGVHNHPVTQHVEGHSY-AGRLTEQEANILVD-LSRSNISPKEILQTL-------KQR 181
                HNH +    + H   + R     A  L+D L  + + P+ I+  L        + 
Sbjct: 168 GFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKV 227

Query: 182 DMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLDKLRKHGYIEWHRY----NEETDCFKD 237
               V     + N R K   GE      +  LLD LR+      + +      E     +
Sbjct: 228 GFTEVDCRNYMRNNRQKSIEGE------IQLLLDYLRQMNADNPNFFYSVQGSEDQSVGN 281

Query: 238 LFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDD 297
           +FWA P A+     F   V  D TY+++ Y   F    G            A++ +E + 
Sbjct: 282 VFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINETEA 341

Query: 298 NYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKK 357
           +++W      + M     P  I TD D  +  +I  VFP A +  C+WHI K        
Sbjct: 342 SFVWLFNTWLAAMSAHP-PVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLSH 400

Query: 358 LFETKERWEAFICSWNVLVLSVTEQE--YMQHLGAMESDFSRYPQAIDYVKQTWLANY-K 414
           +F     +E+       L  SV + E  +   L   E     + QAI   ++ W+  Y +
Sbjct: 401 VFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQWVPVYLR 460

Query: 415 EKFVA 419
           + F A
Sbjct: 461 DTFFA 465

Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SY66\|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1	Back alignment and function description

>sp\|Q9SWG3\|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1	Back alignment and function description

>sp\|Q3EBQ3\|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1	Back alignment and function description

>sp\|Q9SSQ4\|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1	Back alignment and function description

>sp\|Q3E7I5\|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1	Back alignment and function description

>sp\|Q9LIE5\|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1	Back alignment and function description

>sp\|Q9ZVC9\|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		844
297744547		701	unnamed protein product [Vitis vinifera]	0.735	0.885	0.486	0.0
356499731		878	PREDICTED: uncharacterized protein LOC10	0.933	0.897	0.417	0.0
147776975		773	hypothetical protein VITISV_001036 [Viti	0.644	0.703	0.542	1e-180
356536595		877	PREDICTED: uncharacterized protein LOC10	0.936	0.900	0.422	1e-180
356529783		1403	PREDICTED: uncharacterized protein LOC10	0.707	0.425	0.425	1e-137
92893886		985	Ovarian tumour, otubain [Medicago trunca	0.925	0.792	0.320	1e-120
124361025		1063	Ovarian tumour, otubain, putative [Medic	0.907	0.720	0.317	1e-116
357438051		1379	Cysteine-rich receptor-like protein kina	0.885	0.541	0.302	1e-103
356536993		426	PREDICTED: protein FAR1-RELATED SEQUENCE	0.477	0.946	0.436	1e-96
87241356		795	Ovarian tumour, otubain [Medicago trunca	0.766	0.813	0.313	4e-91

>gi\|297744547\|emb\|CBI37809.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/686 (48%), Positives = 452/686 (65%), Gaps = 65/686 (9%)

Query: 156 QEANILVDLSRSNISPKEILQTLKQRDMHNVSTIKAIYNARHKYRVGEQVGQLHMHQLLD 215
           +E  IL+DLS+S + PKEIL TLK+RD  N +TIK IYNARHK+++ E  G   M QL++
Sbjct: 2   EEIGILIDLSKSQMKPKEILNTLKERDGLNCTTIKGIYNARHKHKLNENAGGSLMQQLMN 61

Query: 216 KLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIV 275
           KL +  YIEWHR +E  +C +DL +AHP ++ LLRAFP V+++DCTY+T+ Y    LE+V
Sbjct: 62  KLMEFKYIEWHRNDEHNNCVRDLMFAHPSSLELLRAFPRVLIMDCTYRTNKYQLPLLEVV 121

Query: 276 GATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAVF 335
           G TSTE TFS+AFAYL SER++ + W LERLRSM++D  LPRV++TD++ +LMN+++ VF
Sbjct: 122 GVTSTEKTFSVAFAYLGSEREEAHTWALERLRSMIDDAMLPRVVMTDREPSLMNALQKVF 181

Query: 336 PRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVLVLSVTEQEYMQHLGAMESDF 395
           P A+NLLCRWHIS NI  NCK  FE+K R +AFI  WN++VL+ TE EY   L  +ES F
Sbjct: 182 PMASNLLCRWHISTNILANCKIFFESKSRLDAFISMWNIVVLAETEDEYANRLNQLESHF 241

Query: 396 SRYPQAIDYVKQTWLANYKEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFE 455
            RY QAI+Y K+ WL  YKEKFVA WT+  MHFGN T+NR E+T  KLKR L + +G+ E
Sbjct: 242 HRYIQAINYCKEQWLLPYKEKFVAVWTNKVMHFGNTTVNRAESTRAKLKRQLGLSRGDIE 301

Query: 456 TSWAKVHSLLEQQHYEIKASFERSSTIVQHNFKVPIFEELRGFVSLNAMNIILGESERAD 515
           +SW K+HSLLE QH +IK SFE S T VQHNFK P++ E+RG VS +A+ I++ E+ R++
Sbjct: 302 SSWPKIHSLLELQHIDIKTSFEISLTNVQHNFKDPLYGEVRGSVSKSALCILVDEANRSE 361

Query: 516 SVGLNASACGCVFRRTHGLPCAHEIAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALEL 575
           S+G++ASACGCV+ RTHGLPCAHEI+ YK   + IPL  VD HW+KLD V V+     ++
Sbjct: 362 SIGVDASACGCVYSRTHGLPCAHEISSYKIRGQPIPLACVDPHWRKLDLVSVSGKKVQDV 421

Query: 576 SFRAEIEMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKLG- 634
           SF   +E+F KRF + D  GK+QL+ KL EL NS ST   A    V+        +K G 
Sbjct: 422 SFTTAMELFYKRFMDADDIGKQQLVMKLMELVNSTSTSLVAPKENVK--------TKEGC 473

Query: 635 TSTYQDPSELQ-YVLSVQDSDSAPLRTSSATSMQLKGRQKEKVFRTKSHQPLCFIDSFPA 693
           TS++  P  LQ Y++ V+D                                         
Sbjct: 474 TSSF--PEGLQPYIMHVKD----------------------------------------- 490

Query: 694 GLRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAE 753
                      V ADG+CGFRV+A  M +GE+ W QVRRD++ EL++++ +Y QL+ D  
Sbjct: 491 -----------VAADGNCGFRVIASAMGMGEEGWPQVRRDMLFELRTYWAEYAQLFRDPI 539

Query: 754 IARELLHSLSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRSVPLPR 813
              EL+H L + +S    +  M MPD GH+IASRYN+VL+++S Q C TFLPLRS P P 
Sbjct: 540 RVDELIHVLEHFQSPADYDRWMTMPDMGHIIASRYNVVLVYISMQLCLTFLPLRSAPTPL 599

Query: 814 TSRKIVTIGFVNECQFVKVLDFSQTP 839
             R++++IGF+N+  FV+    ++TP
Sbjct: 600 PMRRVLSIGFINDNHFVETWK-TKTP 624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356499731\|ref\|XP_003518690.1\| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]	Back alignment and taxonomy information

>gi\|147776975\|emb\|CAN70078.1\| hypothetical protein VITISV_001036 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356536595\|ref\|XP_003536822.1\| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]	Back alignment and taxonomy information

>gi\|356529783\|ref\|XP_003533467.1\| PREDICTED: uncharacterized protein LOC100782358 [Glycine max]	Back alignment and taxonomy information

>gi\|92893886\|gb\|ABE91936.1\| Ovarian tumour, otubain [Medicago truncatula]	Back alignment and taxonomy information

>gi\|124361025\|gb\|ABN08997.1\| Ovarian tumour, otubain, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357438051\|ref\|XP_003589301.1\| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi\|355478349\|gb\|AES59552.1\| Cysteine-rich receptor-like protein kinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356536993\|ref\|XP_003537016.1\| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]	Back alignment and taxonomy information

>gi\|87241356\|gb\|ABD33214.1\| Ovarian tumour, otubain [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		844
TAIR\|locus:2121060		788	FRS5 "FAR1-related sequence 5"	0.351	0.376	0.233	1.1e-09
TAIR\|locus:2129665		827	FAR1 "FAR-RED IMPAIRED RESPONS	0.481	0.490	0.199	2e-08
CGD\|CAL0004344		568	orf19.4703 [Candida albicans (	0.176	0.262	0.248	6.6e-08
UNIPROTKB\|Q5AME3		568	CaO19.4703 "Putative uncharact	0.176	0.262	0.248	6.6e-08
TAIR\|locus:2062606		807	FRS2 "FAR1-related sequence 2"	0.206	0.215	0.213	1.9e-05
ASPGD\|ASPL0000057040		404	AN0859 [Emericella nidulans (t	0.188	0.393	0.242	5.4e-05
TAIR\|locus:2035144		703	FRS6 "FAR1-related sequence 6"	0.284	0.341	0.253	7.6e-05
TAIR\|locus:2014639		732	FRS4 "FAR1-related sequence 4"	0.272	0.314	0.210	0.00046
CGD\|CAL0006339		573	orf19.4959 [Candida albicans (	0.183	0.270	0.236	0.00054
UNIPROTKB\|Q5AL18		573	CaO19.4959 "Putative uncharact	0.183	0.270	0.236	0.00054

TAIR\|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 181 (68.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 73/312 (23%), Positives = 123/312 (39%)

Query:   120 KLDTDDDWILKVVCGVHNHPVTQHVEGHSYAG-RLTEQEANILVD-LSRSNISPKEILQT 177
             K+     W++      HNH +    + H     R     A  L+D L  + + P+ I+  
Sbjct:   157 KMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSA 216

Query:   178 LKQRDMHNVSTIKAI-YNARHKYRVGEQVG-QLHMHQLLDKLRK----HGYIEWHRYNEE 231
             L  ++   +S +     + R+  R   Q   +  +  LLD LR+    +    +     E
Sbjct:   217 LI-KEYGGISKVGFTEVDCRNYMRNNRQKSIEGEIQLLLDYLRQMNADNPNFFYSVQGSE 275

Query:   232 TDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYL 291
                  ++FWA P A+     F   V  D TY+++ Y   F    G            A++
Sbjct:   276 DQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFI 335

Query:   292 ESERDDNYIWTLERLRSMMEDDALPRV-IVTDKDLALMNSIRAVFPRATNLLCRWHISKN 350
              +E + +++W      + M   A P V I TD D  +  +I  VFP A +  C+WHI K 
Sbjct:   336 INETEASFVWLFNTWLAAMS--AHPPVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKK 393

Query:   351 ISVNCKKLFETKERWEAFICSWNVLVLSVTEQE--YMQHLGAMESDFSRYPQAIDYVKQT 408
                    +F     +E+       L  SV + E  +   L   E     + QAI   ++ 
Sbjct:   394 CQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQ 453

Query:   409 WLANY-KEKFVA 419
             W+  Y ++ F A
Sbjct:   454 WVPVYLRDTFFA 465

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

TAIR\|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0004344 orf19.4703 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AME3 CaO19.4703 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

TAIR\|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000057040 AN0859 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TAIR\|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0006339 orf19.4959 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AL18 CaO19.4959 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		844
pfam10551		88	pfam10551, MULE, MULE transposase domain	3e-17
PLN03097		846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	9e-08

>gnl\|CDD\|220806 pfam10551, MULE, MULE transposase domain	Back alignment and domain information

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 260 CTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVI 319
            TY T+     +   VG       F +AFA +  E ++++ W LE L+  +     P  I
Sbjct: 1   GTYLTN----KYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRP-PLTI 55

Query: 320 VTDKDLALMNSIRAVFPRATNLLCRWHISKNIS 352
           ++D D  L  +I+ VFP A + LC WHI +N+ 
Sbjct: 56  ISDGDKGLKKAIKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88

>gnl\|CDD\|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		844
PLN03097		846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551		93	MULE: MULE transposase domain; InterPro: IPR018289	99.81
PF00872		381	Transposase_mut: Transposase, Mutator family; Inte	99.71
PF03101		91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	99.64
PF02338		121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.6
PF08731		111	AFT: Transcription factor AFT; InterPro: IPR014842	99.44
KOG2606		302	consensus OTU (ovarian tumor)-like cysteine protea	99.31
COG3328		379	Transposase and inactivated derivatives [DNA repli	99.19
PF03108		67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	98.86
smart00575		28	ZnF_PMZ plant mutator transposase zinc finger.	98.45
KOG2605		371	consensus OTU (ovarian tumor)-like cysteine protea	97.95
KOG3288		307	consensus OTU-like cysteine protease [Signal trans	97.7
PF04434		40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.52
PF10275		244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	97.49
KOG3991		256	consensus Uncharacterized conserved protein [Funct	96.96
PF06782		470	UPF0236: Uncharacterised protein family (UPF0236);	96.41
PF03106		60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	95.43
PF05412		108	Peptidase_C33: Equine arterivirus Nsp2-type cystei	94.6
PF01610		249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.54
PF04684		496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	93.24
smart00774		59	WRKY DNA binding domain. The WRKY domain is a DNA	92.26
COG5539		306	Predicted cysteine protease (OTU family) [Posttran	92.25
PF13610		140	DDE_Tnp_IS240: DDE domain	90.7
PF04500		62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	89.4

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.2e-79  Score=712.75  Aligned_cols=509  Identities=19%  Similarity=0.272  Sum_probs=410.9

Q ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHhhhcCeEEEEEeecCCC-CCCCceEEEEEecCCccCCCCCCCCCC---------C
Q 003149           31 DFSSAFTTDMVFNSREELVEWIRDTGKRNGLVIVIKKSDVGG-DGRRPRITFACERSGAYRRKYTEGQTP---------K  100 (844)
Q Consensus        31 ~~~~~~~~g~~F~S~de~~~~~~~ya~~~GF~v~~~~S~~~~-~g~~~~~~~vC~r~G~~r~~~~~~~~~---------~  100 (844)
                      +....|.+||+|+|.|||++||+.||++.||+||+.+|.+++ ++.++.++|+|+|+|+.+.+.+.....         .
T Consensus        69 ~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~  148 (846)
T PLN03097         69 DTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPE  148 (846)
T ss_pred             CCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcc
Confidence            444579999999999999999999999999999999888876 667788999999999765322100000         0


Q ss_pred             -CCCCCCceeeCCccEEEEEeeCCCCCeEEEEEccccCCCCCCCcccCccccCCCHHHHHHHHHHhhCCCChHHHHHHHH
Q 003149          101 -RPKTTGTKKCGCPFLLKGHKLDTDDDWILKVVCGVHNHPVTQHVEGHSYAGRLTEQEANILVDLSRSNISPKEILQTLK  179 (844)
Q Consensus       101 -~rr~~~s~~~gCp~~i~~~~~~~~~~w~v~~~~~~HNH~~~~~~~~~~~~rrl~~~~~~~i~~l~~~~~~p~~I~~~l~  179 (844)
                       .+++++.+|+||+|+|+++. ..+|+|.|+.+..+|||++.++...       +...+.....+..          .+.
T Consensus       149 ~~~~rR~~tRtGC~A~m~Vk~-~~~gkW~V~~fv~eHNH~L~p~~~~-------~~~~r~~~~~~~~----------~~~  210 (846)
T PLN03097        149 NGTGRRSCAKTDCKASMHVKR-RPDGKWVIHSFVKEHNHELLPAQAV-------SEQTRKMYAAMAR----------QFA  210 (846)
T ss_pred             cccccccccCCCCceEEEEEE-cCCCeEEEEEEecCCCCCCCCcccc-------chhhhhhHHHHHh----------hhh
Confidence             01234467899999999965 4679999999999999999976431       1121221111110          000


Q ss_pred             hcCCCcc-chHHHHHHHHHHhhhccccCcchHHHHHHHHH----hcCcEEEEEeeccCCceeeeEecChHHHHHHHhCCc
Q 003149          180 QRDMHNV-STIKAIYNARHKYRVGEQVGQLHMHQLLDKLR----KHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPS  254 (844)
Q Consensus       180 ~~~~~~~-~t~kdi~n~~~~~r~~~~~g~~~~~~ll~~l~----e~~~~~~~~~~d~~~~~~~if~~~~~~~~~~~~~~~  254 (844)
                      . + .++ .+.++..|...+.+.... ...+++.++++|+    +||.|+|++++|+++++.+|||+++.++..|.+|||
T Consensus       211 ~-~-~~v~~~~~d~~~~~~~~r~~~~-~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGD  287 (846)
T PLN03097        211 E-Y-KNVVGLKNDSKSSFDKGRNLGL-EAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSD  287 (846)
T ss_pred             c-c-ccccccchhhcchhhHHHhhhc-ccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCC
Confidence            0 0 111 233444444444443333 2348999999985    599999999999999999999999999999999999


Q ss_pred             EEEEeccccCCCCCCeeEEEEEecCCCCceeeEEEeeccCccchHHHHHHHHHHhhcCCCCCeEEEeeccHHHHHHHHHh
Q 003149          255 VVMIDCTYKTSMYPFSFLEIVGATSTELTFSIAFAYLESERDDNYIWTLERLRSMMEDDALPRVIVTDKDLALMNSIRAV  334 (844)
Q Consensus       255 vl~iD~T~~tn~~~~~l~~~~g~~~~~~~~~~a~al~~~E~~es~~w~l~~lk~~~~~~~~P~~iitD~~~al~~Ai~~v  334 (844)
                      ||++|+||.||+|++||..|+|+|+|++++++|+||+.+|+.++|.|+|++|+++| ++..|++||||+|.+|.+||.+|
T Consensus       288 vV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM-~gk~P~tIiTDqd~am~~AI~~V  366 (846)
T PLN03097        288 VVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM-GGQAPKVIITDQDKAMKSVISEV  366 (846)
T ss_pred             EEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh-CCCCCceEEecCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 88999999999999999999999


Q ss_pred             CCCcccchhhhhHHHhHHHhhhhhhhhhhHHHHHHHHhhhc-ccCcCHHHHHHHHHHHHhhccCchhHHHHHHHhhhcch
Q 003149          335 FPRATNLLCRWHISKNISVNCKKLFETKERWEAFICSWNVL-VLSVTEQEYMQHLGAMESDFSRYPQAIDYVKQTWLANY  413 (844)
Q Consensus       335 fP~~~~~lC~~Hi~kn~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~t~~~f~~~~~~l~~~~~~~~~~~~y~~~~Wl~~~  413 (844)
                      ||++.|++|.|||++|+.+++...+..   .+.|...|..+ ..+.++++|+..|..|.+.+.-..  -+++..-|  ..
T Consensus       367 fP~t~Hr~C~wHI~~~~~e~L~~~~~~---~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~--n~WL~~LY--~~  439 (846)
T PLN03097        367 FPNAHHCFFLWHILGKVSENLGQVIKQ---HENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKE--DEWMQSLY--ED  439 (846)
T ss_pred             CCCceehhhHHHHHHHHHHHhhHHhhh---hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--cHHHHHHH--Hh
Confidence            999999999999999999999877643   34677777665 458999999999999988763211  13333333  47


Q ss_pred             hhhhHhhhhcccccCCCcccccccchhhHHHHhhcCCCCChhhHHHHHHHHHHH-HHHHHHHHhhhccceeccccchhHH
Q 003149          414 KEKFVAAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLLEQ-QHYEIKASFERSSTIVQHNFKVPIF  492 (844)
Q Consensus       414 ke~w~~~~~~~~~~~g~~T~n~~Es~n~~LK~~l~~~~~~l~~~~~~i~~~i~~-~~~e~~~~~~~~~~~~~~~~~~~~~  492 (844)
                      |++||++|+++.|.+|+.||+++||+|+.||+++.. ..+|..|+.+++.+++. +.+|..+++......+......|+.
T Consensus       440 RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~-~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piE  518 (846)
T PLN03097        440 RKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHK-KTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLE  518 (846)
T ss_pred             HhhhhHHHhcccccCCcccccccccHHHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHH
Confidence            999999999999999999999999999999999975 67899999999999985 5577888888766655555667899


Q ss_pred             HHhhhhhcHHHHHHhhcccccc---------------------------cccC----CcCCCCCccccccCCccchhHhh
Q 003149          493 EELRGFVSLNAMNIILGESERA---------------------------DSVG----LNASACGCVFRRTHGLPCAHEIA  541 (844)
Q Consensus       493 ~~l~~~is~~a~~~~~~e~~~~---------------------------~~V~----~~~~~CsC~~~~~~GlPC~H~la  541 (844)
                      +++.+.+|+.+|..++.|+...                           ..|.    ....+|+|++|+..||||+|+|+
T Consensus       519 kQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLk  598 (846)
T PLN03097        519 KSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALV  598 (846)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHH
Confidence            9999999999999998875421                           0111    13569999999999999999999


Q ss_pred             HHhhcC-CCCCcccccccccccccCCCcc
Q 003149          542 EYKHER-RSIPLLAVDRHWKKLDFVPVTQ  569 (844)
Q Consensus       542 v~~~~~-~~i~~~~i~~rW~~~~~~~~~~  569 (844)
                      |+.+.+ ..||..||++|||+.+......
T Consensus       599 VL~~~~v~~IP~~YILkRWTKdAK~~~~~  627 (846)
T PLN03097        599 VLQMCQLSAIPSQYILKRWTKDAKSRHLL  627 (846)
T ss_pred             HHhhcCcccCchhhhhhhchhhhhhcccC
Confidence            999999 8999999999999998876543

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]	Back alignment and domain information

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants	Back alignment and domain information

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae	Back alignment and domain information

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis	Back alignment and domain information

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]	Back alignment and domain information

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]	Back alignment and domain information

>smart00575 ZnF_PMZ plant mutator transposase zinc finger	Back alignment and domain information

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function	Back alignment and domain information

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif	Back alignment and domain information

>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication	Back alignment and domain information

>smart00774 WRKY DNA binding domain	Back alignment and domain information

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13610 DDE_Tnp_IS240: DDE domain	Back alignment and domain information

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		844
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 79.5 bits (195), Expect = 3e-15
 Identities = 108/676 (15%), Positives = 201/676 (29%), Gaps = 193/676 (28%)

Query: 209 HMHQLLDKLRKHGYIEWHRYNEETDCFKDLFWAHPFAVGLLRAFPSVVMIDCTYKTSMYP 268
           H H  +D              E    +KD+            AF  V   DC       P
Sbjct: 2   HHHHHMD----------FETGEHQYQYKDILSV------FEDAF--VDNFDC-KDVQDMP 42

Query: 269 FSFL------EIVGATSTE----LTF--------SIAFAYLESERDDNYIWTLERLRSMM 310
            S L       I+ +          F         +   ++E     NY + +  +++  
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 311 EDDALPRVIVTDKDLALMNSIRAVFPRATNLLCRWHISKNISVNCKKLFETKERWEAFI- 369
              ++   +  ++   L N  + VF +    + R      +    + L E +      + 
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQ-VFAKYN--VSRLQPYLKLR---QALLELRP--AKNVL 154

Query: 370 ------CSWNVLVLSVTEQEYMQHLGAMES-----DFSRYPQAIDYVKQTWLANYKEKFV 418
                      + L V     +Q    M+      +          ++   L     +  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLEM--LQKLLYQID 210

Query: 419 AAWTDLAMHFGNVTMNRGETTHTKLKRLLAVPQGNFETSWAKVHSLL---EQQHYEIKAS 475
             WT  + H  N+ + R  +   +L+RLL         S    + LL     Q+ +   +
Sbjct: 211 PNWTSRSDHSSNIKL-RIHSIQAELRRLLK--------SKPYENCLLVLLNVQNAKAWNA 261

Query: 476 FE-RSSTIVQHNFKVPIFEEL----RGFVSLNAMNIILGESERADSVGLNASACGCVFRR 530
           F      ++   FK  + + L       +SL+  ++ L   E      L      C   R
Sbjct: 262 FNLSCKILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDC---R 314

Query: 531 THGLP---CAHE------IAEYKHERRSIPLLAVDRHWKKLDFVPVTQDTALELSFRAEI 581
              LP             IAE   +  +        +WK ++   +T            I
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWKHVNCDKLTT----------II 359

Query: 582 EMFVKRFEETDGPGKRQLLKKLKELTNSASTFNSASTSLVELEVDGFPLSKL-GTSTYQD 640
           E  +   E  +    R++  +L       S F    ++ +   +    LS +       D
Sbjct: 360 ESSLNVLEPAE---YRKMFDRL-------SVFP--PSAHIPTIL----LSLIWFDVIKSD 403

Query: 641 PSEL-----QYVLSVQDSDSAPLRTSSATSMQLKGRQKEKVFRTKSHQPLCFIDSFPAGL 695
              +     +Y L  +        T S  S+ L+ + K +      H+ +  +D +    
Sbjct: 404 VMVVVNKLHKYSLVEKQPKE---STISIPSIYLELKVKLENEYAL-HRSI--VDHYNIPK 457

Query: 696 RPYIHDVQDVIADG----HCG--------------FRVVAELMDIGEDNW--AQVRRD-- 733
                D+     D     H G              FR+V   +D     +   ++R D  
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDF---RFLEQKIRHDST 512

Query: 734 -------LVDELQ--SHYDDYIQLYGDA--EIARELLHSLSYSESNPGIEHRMIMPDTGH 782
                  +++ LQ    Y  YI         +   +L  L      P IE         +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL------PKIEE--------N 558

Query: 783 LIASRY-NIV---LMH 794
           LI S+Y +++   LM 
Sbjct: 559 LICSKYTDLLRIALMA 574

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		844
3pfy_A		185	OTU domain-containing protein 5; structural genomi	99.76
3by4_A		212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.72
3phx_A		185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.55
3phu_A		219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.54
1tff_A		234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.2
2zfy_A		234	Ubiquitin thioesterase OTUB1; otubain, structural	98.91
3dkb_A		390	Tumor necrosis factor, alpha-induced protein 3; OT	98.85
4dhi_B		284	Ubiquitin thioesterase otubain-like; ubiquitin E2	98.83
3zrh_A		454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.65
4ddg_A		399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.57
2ayd_A		76	WRKY transcription factor 1; beta strands, zinc fi	95.77
1wj2_A		78	Probable WRKY transcription factor 4; DNA-binding	94.95
2rpr_A		87	Flywch-type zinc finger-containing protein 1; flyw	88.3

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*	Back alignment and structure

Probab=99.76  E-value=4.5e-19  Score=171.36  Aligned_cols=127  Identities=14%  Similarity=0.129  Sum_probs=93.4

Q ss_pred             cccccccccccCCCCCchHHHHHHhhcCCCccHHHHHHHHHHHHHhhhhhHHHhhCCHHHHHHHHhhcCCCCCCCCcccc
Q 003149          695 LRPYIHDVQDVIADGHCGFRVVAELMDIGEDNWAQVRRDLVDELQSHYDDYIQLYGDAEIARELLHSLSYSESNPGIEHR  774 (844)
Q Consensus       695 ~~~~~~~~~~v~~dg~Cgfraia~~lg~~~~~~~~vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~w  774 (844)
                      ++...+.+.+|+|||||+|||||.+|..+++.|..||+.++++|++++++|.+++.  +.|+++++.|.      .++.|
T Consensus        54 ~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~--~~~e~Y~~~m~------~~~~W  125 (185)
T 3pfy_A           54 RDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVT--EDFTTYINRKR------KNNCH  125 (185)
T ss_dssp             HHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------------------
T ss_pred             HHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHhh------CCCcc
Confidence            36788999999999999999999999999999999999999999999999999885  46999999986      67889


Q ss_pred             ccCCCchhhhhcccCeeEEEEcCCcc-ccccCCCCCCCCCCCCCcEEEEEeCCCcEEEEEe
Q 003149          775 MIMPDTGHLIASRYNIVLMHLSQQQC-FTFLPLRSVPLPRTSRKIVTIGFVNECQFVKVLD  834 (844)
Q Consensus       775 ~~~~~~~~~~a~~~~~~v~~~~~~~~-~~~~p~~~~p~~~~~~~~i~l~~~~~~H~~~~~~  834 (844)
                      .+.+.+ .++|..|++||++++...+ ...|+..    .....+||+|+|++++||+||.-
T Consensus       126 Gg~iEL-~AlS~~~~v~I~V~~~~~~~i~i~~g~----~~~~~~~I~L~Y~~~~HYnSv~~  181 (185)
T 3pfy_A          126 GNHIEM-QAMAEMYNRPVEVYQYSTEPINTFHGI----HQNEDEPIRVSYHRNIHYNSVVN  181 (185)
T ss_dssp             CCHHHH-HHHHHHHTSCEEEESSCSSCSEEECTT----SCCTTSCEEEEEETTTEEEEEEC
T ss_pred             chHHHH-HHHHHhhCCcEEEEECCCCCeEEecCc----cCCCCCEEEEEECCCCCcccccC
Confidence            998876 5999999999999997643 1222211    12226899999998899999874

PyMOL of 3pfy

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A	Back alignment and structure

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A	Back alignment and structure

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}	Back alignment and structure

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11	Back alignment and structure

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A	Back alignment and structure

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A	Back alignment and structure

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A	Back alignment and structure

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}	Back alignment and structure

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A	Back alignment and structure

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}	Back alignment and structure

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*	Back alignment and structure

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		844
d1tffa_		228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	98.97
d1wj2a_		71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	95.82

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.4e-10  Score=111.68  Aligned_cols=97  Identities=8%  Similarity=0.023  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhhhhhHHHhhCCHHHHHHHHhh-cCCCCCCCCccccccCCCchhhhhcccCeeEEEEcCCccccccCCCC
Q 003149          730 VRRDLVDELQSHYDDYIQLYGDAEIARELLHS-LSYSESNPGIEHRMIMPDTGHLIASRYNIVLMHLSQQQCFTFLPLRS  808 (844)
Q Consensus       730 vr~~l~~el~~~~~~y~~~~~~~~~~~~~~~~-l~~~~~~~~~~~w~~~~~~~~~~a~~~~~~v~~~~~~~~~~~~p~~~  808 (844)
                      +|......|++|+++|.++..++..+++++.. +.      +.+.|.+-..+ .+||.+|++||.++..+.+..-++...
T Consensus       129 lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~------~~~~e~d~ieI-~aLa~al~v~I~V~~~d~~~~~~~~~~  201 (228)
T d1tffa_         129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVE------PMATECDHIQI-TALSQALSIALQVEYVDEMDTALNHHV  201 (228)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTS------STTCCCCHHHH-HHHHHHHTCCEEEEECC-------CCC
T ss_pred             HHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHc------cccccCCcHHH-HHHHHHhCCCEEEEEecCCCCcccccc
Confidence            58888889999999999988766667777754 65      56788888876 599999999999987754433334333


Q ss_pred             CCCCCCCCCcEEEEEeCCCcEEEEEecC
Q 003149          809 VPLPRTSRKIVTIGFVNECQFVKVLDFS  836 (844)
Q Consensus       809 ~p~~~~~~~~i~l~~~~~~H~~~~~~~~  836 (844)
                      -|...  +++|.|.|- +.||..|+..+
T Consensus       202 ~~~~~--~~~I~Lly~-pgHYdiLY~~~  226 (228)
T d1tffa_         202 FPEAA--TPSVYLLYK-TSHYNILYAAD  226 (228)
T ss_dssp             CCCCS--SCSEEEEEE-TTEEEEEEECC
T ss_pred             CCCCC--CCEEEEEeC-CCCcccCccCC
Confidence            33333  678999996 57999999764

PyMOL of d1tffa_

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure